DOMINE

Names

More detailed information about this field from each metasource. ×

DOMINE

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:07.039456

---

domine

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:07.039456

Close

Other names: domine

Known and predicted protein domain interactions observed in PDB entries,

Webpage:

Publications:

Publications

More detailed information about this field from each metasource. ×

DOMINE: a comprehensive collection of known and predicted domain-domain interactions
PMID: 21113022

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:07.039456

Close

• DOMINE: a comprehensive collection of known and predicted domain-domain interactions PubMed citations: 74.

  74 articles citing: DOMINE: a comprehensive collection of known and predicted domain-domain interactions

  ×

  HMGA1 stimulates MYH9-dependent ubiquitination of GSK-3β via PI3K/Akt/c-Jun signaling to promote malignant progression and chemoresistance in gliomas. PMID:34887392

  ---

  Functional enrichment of alternative splicing events with NEASE reveals insights into tissue identity and diseases. PMID:34857024

  ---

  An Ebola, Neisseria and Trypanosoma human protein interaction census reveals a conserved human protein cluster targeted by various human pathogens. PMID:34745452

  ---

  PPIDomainMiner: Inferring domain-domain interactions from multiple sources of protein-protein interactions. PMID:34370723

  ---

  The Scribble Complex PDZ Proteins in Immune Cell Polarities. PMID:32411799

  ---

  Silencing MYH9 blocks HBx-induced GSK3β ubiquitination and degradation to inhibit tumor stemness in hepatocellular carcinoma. PMID:32296025

  ---

  Genome-wide inference of the Camponotus floridanus protein-protein interaction network using homologous mapping and interacting domain profile pairs. PMID:32047225

  ---

  Domain-mediated interactions for protein subfamily identification. PMID:31937869

  ---

  PHI-Nets: A Network Resource for Ascomycete Fungal Pathogens to Annotate and Identify Putative Virulence Interacting Proteins and siRNA Targets. PMID:31866958

  ---

  Comparative study of excretory-secretory proteins released by Schistosoma mansoni-resistant, susceptible and naïve Biomphalaria glabrata. PMID:31521183

  ---

  Landscape of the Plasmodium Interactome Reveals Both Conserved and Species-Specific Functionality. PMID:31390575

  ---

  Building Bridges Between Structural and Network-Based Systems Biology. PMID:30656572

  ---

  From sequencing data to gene functions: co-functional network approaches. PMID:30460054

  ---

  Identification of Antifungal Targets Based on Computer Modeling. PMID:29973534

  ---

  Genome sequencing and protein domain annotations of Korean Hanwoo cattle identify Hanwoo-specific immunity-related and other novel genes. PMID:29843617

  ---

  Co-complex protein membership evaluation using Maximum Entropy on GO ontology and InterPro annotation. PMID:29390084

  ---

  R Script Approach to Infer Toxoplasma Infection Mechanisms From Microarrays and Domain-Domain Protein Interactions. PMID:29317802

  ---

  A multi-network clustering method for detecting protein complexes from multiple heterogeneous networks. PMID:29219066

  ---

  Protein-Protein Interactions in Virus-Host Systems. PMID:28861068

  ---

  Investigating the mechanisms of papillary thyroid carcinoma using transcriptome analysis. PMID:28849102

  ---

  Domain-based prediction of the human isoform interactome provides insights into the functional impact of alternative splicing. PMID:28846689

  ---

  Changes in the neuropeptide content of Biomphalaria ganglia nervous system following Schistosoma infection. PMID:28578678

  ---

  ChiPPI: a novel method for mapping chimeric protein-protein interactions uncovers selection principles of protein fusion events in cancer. PMID:28549153

  ---

  PCPPI: a comprehensive database for the prediction of Penicillium-crop protein-protein interactions. PMID:28365721

  ---

  PDLIM5 links kidney anion exchanger 1 (kAE1) to ILK and is required for membrane targeting of kAE1. PMID:28045035

  ---

  Prediction of Protein-Protein Interactions by Evidence Combining Methods. PMID:27879651

  ---

  Enhancing interacting residue prediction with integrated contact matrix prediction in protein-protein interaction. PMID:27818677

  ---

  Systematic Identification of Anti-Fungal Drug Targets by a Metabolic Network Approach. PMID:27379244

  ---

  Reconstruction and Application of Protein-Protein Interaction Network. PMID:27338356

  ---

  Weighted mutual information analysis substantially improves domain-based functional network models. PMID:27207946

  ---

  PTIR: Predicted Tomato Interactome Resource. PMID:27121261

  ---

  An inter-species protein-protein interaction network across vast evolutionary distance. PMID:27107014

  ---

  Computational Reconstruction of NFκB Pathway Interaction Mechanisms during Prostate Cancer. PMID:27078000

  ---

  A Quantitative Approach to Analyzing Genome Reductive Evolution Using Protein-Protein Interaction Networks: A Case Study of Mycobacterium leprae. PMID:27066064

  ---

  Widespread Expansion of Protein Interaction Capabilities by Alternative Splicing. PMID:26871637

  ---

  Multi-tissue transcriptomics for construction of a comprehensive gene resource for the terrestrial snail Theba pisana. PMID:26852673

  ---

  DOMMINO 2.0: integrating structurally resolved protein-, RNA-, and DNA-mediated macromolecular interactions. PMID:26827237

  ---

  Inference of domain-disease associations from domain-protein, protein-disease and disease-disease relationships. PMID:26818594

  ---

  Network-Based Isoform Quantification with RNA-Seq Data for Cancer Transcriptome Analysis. PMID:26699225

  ---

  Qualitative and Quantitative Protein Complex Prediction Through Proteome-Wide Simulations. PMID:26492574

  ---

  Park7 interacts with p47(phox) to direct NADPH oxidase-dependent ROS production and protect against sepsis. PMID:26021615

  ---

  Landscape of protein domain interactome. PMID:25960191

  ---

  Prediction of host - pathogen protein interactions between Mycobacterium tuberculosis and Homo sapiens using sequence motifs. PMID:25887594

  ---

  IIIDB: a database for isoform-isoform interactions and isoform network modules. PMID:25707505

  ---

  Tissue-aware data integration approach for the inference of pathway interactions in metazoan organisms. PMID:25431329

  ---

  Exploiting holistic approaches to model specificity in protein phosphorylation. PMID:25324856

  ---

  Linear motif-mediated interactions have contributed to the evolution of modularity in complex protein interaction networks. PMID:25299147

  ---

  Characterizing protein interactions employing a genome-wide siRNA cellular phenotyping screen. PMID:25255318

  ---

  Identifying transcription factor complexes and their roles. PMID:25161228

  ---

  A novel miR-219-SMC4-JAK2/Stat3 regulatory pathway in human hepatocellular carcinoma. PMID:24980149

  ---

  SuSPect: enhanced prediction of single amino acid variant (SAV) phenotype using network features. PMID:24810707

  ---

  Stringent homology-based prediction of H. sapiens-M. tuberculosis H37Rv protein-protein interactions. PMID:24708540

  ---

  Inferring domain-domain interactions from protein-protein interactions with formal concept analysis. PMID:24586450

  ---

  Computational prediction of the human-microbial oral interactome. PMID:24576332

  ---

  Stringent DDI-based prediction of H. sapiens-M. tuberculosis H37Rv protein-protein interactions. PMID:24564941

  ---

  Predicting protein-protein interaction by the mirrortree method: possibilities and limitations. PMID:24349035

  ---

  iPfam: a database of protein family and domain interactions found in the Protein Data Bank. PMID:24297255

  ---

  An extended network of genomic maintenance in the archaeon Pyrococcus abyssi highlights unexpected associations between eucaryotic homologs. PMID:24244547

  ---

  Integrative pathway-based approach for genome-wide association studies: identification of new pathways for rheumatoid arthritis and type 1 diabetes. PMID:24205270

  ---

  Elementary flux modes analysis of functional domain networks allows a better metabolic pathway interpretation. PMID:24204596

  ---

  High-resolution network biology: connecting sequence with function. PMID:24197012

  ---

  3did: a catalog of domain-based interactions of known three-dimensional structure. PMID:24081580

  ---

  Predicting whole genome protein interaction networks from primary sequence data in model and non-model organisms using ENTS. PMID:24015873

  ---

  Protein-Protein Interactions Inferred from Domain-Domain Interactions in Genogroup II Genotype 4 Norovirus Sequences. PMID:23738320

  ---

  NRF2-ome: an integrated web resource to discover protein interaction and regulatory networks of NRF2. PMID:23710289

  ---

  Reconstituting protein interaction networks using parameter-dependent domain-domain interactions. PMID:23651452

  ---

  Identification of cancer fusion drivers using network fusion centrality. PMID:23505294

  ---

  Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review. PMID:23384594

  ---

  Inferring the Brassica rapa Interactome Using Protein-Protein Interaction Data from Arabidopsis thaliana. PMID:23293649

  ---

  Popular computational methods to assess multiprotein complexes derived from label-free affinity purification and mass spectrometry (AP-MS) experiments. PMID:23071097

  ---

  IDDI: integrated domain-domain interaction and protein interaction analysis system. PMID:22759586

  ---

  DOMMINO: a database of macromolecular interactions. PMID:22135305

  ---

  Proteomic and functional genomic landscape of receptor tyrosine kinase and ras to extracellular signal-regulated kinase signaling. PMID:22028469

  ---

  The 2011 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection. PMID:21177655

Tags:

Tags

More detailed information about this field from each metasource. ×

metabolic and signaling pathways

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

---

protein-protein interactions

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

---

protein interactions

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:07.039456

---

molecular interactions, pathways and networks

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:07.039456

---

protein folds and structural domains

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:07.039456

---

structure prediction

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:07.039456

---

protein interaction experiment

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:07.039456

Close

metabolic and signaling pathways protein-protein interactions protein interaction molecular interactions, pathways and networks protein folds and structural domains structure prediction protein interaction experiment