HMGA1 stimulates MYH9-dependent ubiquitination of GSK-3β via PI3K/Akt/c-Jun signaling to promote malignant progression and chemoresistance in gliomas.
PMID:34887392
Functional enrichment of alternative splicing events with NEASE reveals insights into tissue identity and diseases.
PMID:34857024
An Ebola, Neisseria and Trypanosoma human protein interaction census reveals a conserved human protein cluster targeted by various human pathogens.
PMID:34745452
PPIDomainMiner: Inferring domain-domain interactions from multiple sources of protein-protein interactions.
PMID:34370723
The Scribble Complex PDZ Proteins in Immune Cell Polarities.
PMID:32411799
Silencing MYH9 blocks HBx-induced GSK3β ubiquitination and degradation to inhibit tumor stemness in hepatocellular carcinoma.
PMID:32296025
Genome-wide inference of the Camponotus floridanus protein-protein interaction network using homologous mapping and interacting domain profile pairs.
PMID:32047225
Domain-mediated interactions for protein subfamily identification.
PMID:31937869
PHI-Nets: A Network Resource for Ascomycete Fungal Pathogens to Annotate and Identify Putative Virulence Interacting Proteins and siRNA Targets.
PMID:31866958
Comparative study of excretory-secretory proteins released by Schistosoma mansoni-resistant, susceptible and naïve Biomphalaria glabrata.
PMID:31521183
Landscape of the Plasmodium Interactome Reveals Both Conserved and Species-Specific Functionality.
PMID:31390575
Building Bridges Between Structural and Network-Based Systems Biology.
PMID:30656572
From sequencing data to gene functions: co-functional network approaches.
PMID:30460054
Identification of Antifungal Targets Based on Computer Modeling.
PMID:29973534
Genome sequencing and protein domain annotations of Korean Hanwoo cattle identify Hanwoo-specific immunity-related and other novel genes.
PMID:29843617
Co-complex protein membership evaluation using Maximum Entropy on GO ontology and InterPro annotation.
PMID:29390084
R Script Approach to Infer Toxoplasma Infection Mechanisms From Microarrays and Domain-Domain Protein Interactions.
PMID:29317802
A multi-network clustering method for detecting protein complexes from multiple heterogeneous networks.
PMID:29219066
Protein-Protein Interactions in Virus-Host Systems.
PMID:28861068
Investigating the mechanisms of papillary thyroid carcinoma using transcriptome analysis.
PMID:28849102
Domain-based prediction of the human isoform interactome provides insights into the functional impact of alternative splicing.
PMID:28846689
Changes in the neuropeptide content of Biomphalaria ganglia nervous system following Schistosoma infection.
PMID:28578678
ChiPPI: a novel method for mapping chimeric protein-protein interactions uncovers selection principles of protein fusion events in cancer.
PMID:28549153
PCPPI: a comprehensive database for the prediction of Penicillium-crop protein-protein interactions.
PMID:28365721
PDLIM5 links kidney anion exchanger 1 (kAE1) to ILK and is required for membrane targeting of kAE1.
PMID:28045035
Prediction of Protein-Protein Interactions by Evidence Combining Methods.
PMID:27879651
Enhancing interacting residue prediction with integrated contact matrix prediction in protein-protein interaction.
PMID:27818677
Systematic Identification of Anti-Fungal Drug Targets by a Metabolic Network Approach.
PMID:27379244
Reconstruction and Application of Protein-Protein Interaction Network.
PMID:27338356
Weighted mutual information analysis substantially improves domain-based functional network models.
PMID:27207946
PTIR: Predicted Tomato Interactome Resource.
PMID:27121261
An inter-species protein-protein interaction network across vast evolutionary distance.
PMID:27107014
Computational Reconstruction of NFκB Pathway Interaction Mechanisms during Prostate Cancer.
PMID:27078000
A Quantitative Approach to Analyzing Genome Reductive Evolution Using Protein-Protein Interaction Networks: A Case Study of Mycobacterium leprae.
PMID:27066064
Widespread Expansion of Protein Interaction Capabilities by Alternative Splicing.
PMID:26871637
Multi-tissue transcriptomics for construction of a comprehensive gene resource for the terrestrial snail Theba pisana.
PMID:26852673
DOMMINO 2.0: integrating structurally resolved protein-, RNA-, and DNA-mediated macromolecular interactions.
PMID:26827237
Inference of domain-disease associations from domain-protein, protein-disease and disease-disease relationships.
PMID:26818594
Network-Based Isoform Quantification with RNA-Seq Data for Cancer Transcriptome Analysis.
PMID:26699225
Qualitative and Quantitative Protein Complex Prediction Through Proteome-Wide Simulations.
PMID:26492574
Park7 interacts with p47(phox) to direct NADPH oxidase-dependent ROS production and protect against sepsis.
PMID:26021615
Landscape of protein domain interactome.
PMID:25960191
Prediction of host - pathogen protein interactions between Mycobacterium tuberculosis and Homo sapiens using sequence motifs.
PMID:25887594
IIIDB: a database for isoform-isoform interactions and isoform network modules.
PMID:25707505
Tissue-aware data integration approach for the inference of pathway interactions in metazoan organisms.
PMID:25431329
Exploiting holistic approaches to model specificity in protein phosphorylation.
PMID:25324856
Linear motif-mediated interactions have contributed to the evolution of modularity in complex protein interaction networks.
PMID:25299147
Characterizing protein interactions employing a genome-wide siRNA cellular phenotyping screen.
PMID:25255318
Identifying transcription factor complexes and their roles.
PMID:25161228
A novel miR-219-SMC4-JAK2/Stat3 regulatory pathway in human hepatocellular carcinoma.
PMID:24980149
SuSPect: enhanced prediction of single amino acid variant (SAV) phenotype using network features.
PMID:24810707
Stringent homology-based prediction of H. sapiens-M. tuberculosis H37Rv protein-protein interactions.
PMID:24708540
Inferring domain-domain interactions from protein-protein interactions with formal concept analysis.
PMID:24586450
Computational prediction of the human-microbial oral interactome.
PMID:24576332
Stringent DDI-based prediction of H. sapiens-M. tuberculosis H37Rv protein-protein interactions.
PMID:24564941
Predicting protein-protein interaction by the mirrortree method: possibilities and limitations.
PMID:24349035
iPfam: a database of protein family and domain interactions found in the Protein Data Bank.
PMID:24297255
An extended network of genomic maintenance in the archaeon Pyrococcus abyssi highlights unexpected associations between eucaryotic homologs.
PMID:24244547
Integrative pathway-based approach for genome-wide association studies: identification of new pathways for rheumatoid arthritis and type 1 diabetes.
PMID:24205270
Elementary flux modes analysis of functional domain networks allows a better metabolic pathway interpretation.
PMID:24204596
High-resolution network biology: connecting sequence with function.
PMID:24197012
3did: a catalog of domain-based interactions of known three-dimensional structure.
PMID:24081580
Predicting whole genome protein interaction networks from primary sequence data in model and non-model organisms using ENTS.
PMID:24015873
Protein-Protein Interactions Inferred from Domain-Domain Interactions in Genogroup II Genotype 4 Norovirus Sequences.
PMID:23738320
NRF2-ome: an integrated web resource to discover protein interaction and regulatory networks of NRF2.
PMID:23710289
Reconstituting protein interaction networks using parameter-dependent domain-domain interactions.
PMID:23651452
Identification of cancer fusion drivers using network fusion centrality.
PMID:23505294
Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review.
PMID:23384594
Inferring the Brassica rapa Interactome Using Protein-Protein Interaction Data from Arabidopsis thaliana.
PMID:23293649
Popular computational methods to assess multiprotein complexes derived from label-free affinity purification and mass spectrometry (AP-MS) experiments.
PMID:23071097
IDDI: integrated domain-domain interaction and protein interaction analysis system.
PMID:22759586
DOMMINO: a database of macromolecular interactions.
PMID:22135305
Proteomic and functional genomic landscape of receptor tyrosine kinase and ras to extracellular signal-regulated kinase signaling.
PMID:22028469
The 2011 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection.
PMID:21177655