NPInter v4.0
An integrated database of ncRNA interactions. Noncoding RNAs (ncRNAs) play crucial regulatory roles in a variety of biological circuits. To document regulatory interactions between ncRNAs and biomolecules, we previously created the NPInter database (http: bigdata.ibp.ac.cn npinter). Since the last version of NPInter was issued, a rapidly growing number of studies have reported novel interactions and accumulated numerous high-throughput interactome data. We have therefore updated NPInter to its fourth edition in which are integrated 600 000 new experimentally identified ncRNA interactions. ncRNA-DNA interactions derived from ChIRP-seq data and circular RNA interactions have been included in the database. Additionally, disease associations were annotated to the interacting molecules. The database website has also been redesigned with a more user-friendly interface and several additional functional modules.
Description
More detailed information about this field from each metasource.
An integrated database of ncRNA interactions. Noncoding RNAs (ncRNAs) play crucial regulatory roles in a variety of biological circuits. To document regulatory interactions between ncRNAs and biomolecules, we previously created the NPInter database (http: bigdata.ibp.ac.cn npinter). Since the last version of NPInter was issued, a rapidly growing number of studies have reported novel interactions and accumulated numerous high-throughput interactome data. We have therefore updated NPInter to its fourth edition in which are integrated 600 000 new experimentally identified ncRNA interactions. ncRNA-DNA interactions derived from ChIRP-seq data and circular RNA interactions have been included in the database. Additionally, disease associations were annotated to the interacting molecules. The database website has also been redesigned with a more user-friendly interface and several additional functional modules.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:15.309801
Webpage:
http://bigdata.ibp.ac.cn/npinterWebpage
More detailed information about this field from each metasource.
http://bigdata.ibp.ac.cn/npinter
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:15.309801
Publications:
Publications
More detailed information about this field from each metasource.
NPInter v4.0: an integrated database of ncRNA interactions
PMID: 31670377
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:15.309801
Publications
More detailed information about this field from each metasource.
NPInter v4.0: an integrated database of ncRNA interactions
PMID: 31670377
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:15.309801
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NPInter v4.0: an integrated database of ncRNA interactions
PubMed citations: 39.
39 articles citing: NPInter v4.0: an integrated database of ncRNA interactions
Hypoxia-induced PVT1 promotes lung cancer chemoresistance to cisplatin by autophagy via PVT1/miR-140-3p/ATG5 axis. PMID:35256612
Co-Regulation of Protein Coding Genes by Transcription Factor and Long Non-Coding RNA in SARS-CoV-2 Infected Cells: An In Silico Analysis. PMID:34940755
Development of a Prognostic Model Based on the Identification of EMT-Related lncRNAs in Triple-Negative Breast Cancer. PMID:34873403
LGFC-CNN: Prediction of lncRNA-Protein Interactions by Using Multiple Types of Features through Deep Learning. PMID:34828296
lncRNAfunc: a knowledgebase of lncRNA function in human cancer. PMID:34791419
Bioinformatic Tools for the Analysis and Prediction of ncRNA Interactions. PMID:34768830
LncRNAWiki 2.0: a knowledgebase of human long non-coding RNAs with enhanced curation model and database system. PMID:34751395
SVDNVLDA: predicting lncRNA-disease associations by Singular Value Decomposition and node2vec. PMID:34727886
RPS: a comprehensive database of RNAs involved in liquid-liquid phase separation. PMID:34718734
RNAInter v4.0: RNA interactome repository with redefined confidence scoring system and improved accessibility. PMID:34718726
Introduction to Bioinformatics Resources for Post-transcriptional Regulation of Gene Expression. PMID:34694601
Modifying the m6A brain methylome by ALKBH5-mediated demethylation: a new contender for synaptic tagging. PMID:34663904
SignaLink3: a multi-layered resource to uncover tissue-specific signaling networks. PMID:34634810
Biomolecule and Bioentity Interaction Databases in Systems Biology: A Comprehensive Review. PMID:34439912
Illuminating lncRNA Function Through Target Prediction. PMID:34417758
Construction of Circulating MicroRNAs-Based Non-invasive Prediction Models of Recurrent Implantation Failure by Network Analysis. PMID:34367263
A Survey of Current Resources to Study lncRNA-Protein Interactions. PMID:34201302
LncRNAs and Available Databases. PMID:34160796
Decoding LncRNAs. PMID:34072257
ncFANs v2.0: an integrative platform for functional annotation of non-coding RNAs. PMID:34050762
The prognostic value of an autophagy-related lncRNA signature in hepatocellular carcinoma. PMID:33910497
Approaches to Identify and Characterise the Post-Transcriptional Roles of lncRNAs in Cancer. PMID:33803328
EDLMFC: an ensemble deep learning framework with multi-scale features combination for ncRNA-protein interaction prediction. PMID:33740884
In silico analysis of altered expression of long non-coding RNA in SARS-CoV-2 infected cells and their possible regulation by STAT1, STAT3 and interferon regulatory factors. PMID:33688586
The Implications of ncRNAs in the Development of Human Diseases. PMID:33668203
NG-Circos: next-generation Circos for data visualization and interpretation. PMID:33575618
The lncRNA Toolkit: Databases and In Silico Tools for lncRNA Analysis. PMID:33339309
Perversely expressed long noncoding RNAs can alter host response and viral proliferation in SARS-CoV-2 infection. PMID:33224264
EVLncRNAs 2.0: an updated database of manually curated functional long non-coding RNAs validated by low-throughput experiments. PMID:33221906
ASDmiR: A Stepwise Method to Uncover miRNA Regulation Related to Autism Spectrum Disorder. PMID:33173536
Identification of Cooperative Gene Regulation Among Transcription Factors, LncRNAs, and MicroRNAs in Diabetic Nephropathy Progression. PMID:33088282
Target Enrichment Enables the Discovery of lncRNAs with Somatic Mutations or Altered Expression in Paraffin-Embedded Colorectal Cancer Samples. PMID:33019720
The Interplay between Long Noncoding RNAs and Proteins of the Epigenetic Machinery in Ovarian Cancer. PMID:32967233
Disease-Associated Circular RNAs: From Biology to Computational Identification. PMID:32908906
Non-Coding RNA Databases in Cardiovascular Research. PMID:32887511
Computational Methods and Software Tools for Functional Analysis of miRNA Data. PMID:32872205
Gene Expression Profiling in Fibromyalgia Indicates an Autoimmune Origin of the Disease and Opens New Avenues for Targeted Therapy. PMID:32532082
miEAA 2.0: integrating multi-species microRNA enrichment analysis and workflow management systems. PMID:32374865
Predicting lncRNA-Protein Interactions With miRNAs as Mediators in a Heterogeneous Network Model. PMID:32038709
Tags:
Tags
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functional, regulatory and non-coding rna
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:15.309801
molecular interactions, pathways and networks
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:15.309801
molecular biology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:15.309801
gene transcripts
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:15.309801
dna
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:15.309801
Tags
More detailed information about this field from each metasource.
functional, regulatory and non-coding rna
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:15.309801
molecular interactions, pathways and networks
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:15.309801
molecular biology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:15.309801
gene transcripts
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:15.309801
dna
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:15.309801
functional, regulatory and non-coding rna molecular interactions, pathways and networks molecular biology gene transcripts dna
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