Minimum Information About a Microarray Experiment involving Plants
Names
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Minimum Information About a Microarray Experiment involving Plants
metasource: Fairsharing.org
version: FAIRsharing.org: MIAME/Plant; Minimum Information About a Microarray Experiment involving Plants; DOI: https://doi.org/10.25504/FAIRsharing.pvdrmz; Last edited: April 27, 2021, 2:01 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
MIAME/Plant
metasource: Fairsharing.org
version: FAIRsharing.org: MIAME/Plant; Minimum Information About a Microarray Experiment involving Plants; DOI: https://doi.org/10.25504/FAIRsharing.pvdrmz; Last edited: April 27, 2021, 2:01 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
Names
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Minimum Information About a Microarray Experiment involving Plants
metasource: Fairsharing.orgversion: FAIRsharing.org: MIAME/Plant; Minimum Information About a Microarray Experiment involving Plants; DOI: https://doi.org/10.25504/FAIRsharing.pvdrmz; Last edited: April 27, 2021, 2:01 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
MIAME/Plant
metasource: Fairsharing.orgversion: FAIRsharing.org: MIAME/Plant; Minimum Information About a Microarray Experiment involving Plants; DOI: https://doi.org/10.25504/FAIRsharing.pvdrmz; Last edited: April 27, 2021, 2:01 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
Names
More detailed information about this field from each metasource.
Minimum Information About a Microarray Experiment involving Plants
metasource: Fairsharing.orgversion: FAIRsharing.org: MIAME/Plant; Minimum Information About a Microarray Experiment involving Plants; DOI: https://doi.org/10.25504/FAIRsharing.pvdrmz; Last edited: April 27, 2021, 2:01 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
MIAME/Plant
metasource: Fairsharing.orgversion: FAIRsharing.org: MIAME/Plant; Minimum Information About a Microarray Experiment involving Plants; DOI: https://doi.org/10.25504/FAIRsharing.pvdrmz; Last edited: April 27, 2021, 2:01 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
MIAME/Plant is a standard describing which biological details should be captured for describing microarray experiments involving plants. Detailed information is required about biological aspects such as growth conditions, harvesting time or harvested organ(s).
Description
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MIAME/Plant is a standard describing which biological details should be captured for describing microarray experiments involving plants. Detailed information is required about biological aspects such as growth conditions, harvesting time or harvested organ(s).
metasource: Fairsharing.orgversion: FAIRsharing.org: MIAME/Plant; Minimum Information About a Microarray Experiment involving Plants; DOI: https://doi.org/10.25504/FAIRsharing.pvdrmz; Last edited: April 27, 2021, 2:01 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
Webpage:
http://miame-plant.sourceforge.net/Webpage
More detailed information about this field from each metasource.
http://miame-plant.sourceforge.net/
metasource: Fairsharing.orgversion: FAIRsharing.org: MIAME/Plant; Minimum Information About a Microarray Experiment involving Plants; DOI: https://doi.org/10.25504/FAIRsharing.pvdrmz; Last edited: April 27, 2021, 2:01 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
MIAME/Plant - adding value to plant microarrray experiments
PMID: 16401339
metasource: Fairsharing.org
version: FAIRsharing.org: MIAME/Plant; Minimum Information About a Microarray Experiment involving Plants; DOI: https://doi.org/10.25504/FAIRsharing.pvdrmz; Last edited: April 27, 2021, 2:01 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
Plant-based microarray data at the European Bioinformatics Institute. Introducing AtMIAMExpress, a submission tool for Arabidopsis gene expression data to ArrayExpress
PMID: 16219923
metasource: Fairsharing.org
version: FAIRsharing.org: MIAME/Plant; Minimum Information About a Microarray Experiment involving Plants; DOI: https://doi.org/10.25504/FAIRsharing.pvdrmz; Last edited: April 27, 2021, 2:01 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
Publications
More detailed information about this field from each metasource.
MIAME/Plant - adding value to plant microarrray experiments
PMID: 16401339
metasource: Fairsharing.org
version: FAIRsharing.org: MIAME/Plant; Minimum Information About a Microarray Experiment involving Plants; DOI: https://doi.org/10.25504/FAIRsharing.pvdrmz; Last edited: April 27, 2021, 2:01 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
Plant-based microarray data at the European Bioinformatics Institute. Introducing AtMIAMExpress, a submission tool for Arabidopsis gene expression data to ArrayExpress
PMID: 16219923
metasource: Fairsharing.org
version: FAIRsharing.org: MIAME/Plant; Minimum Information About a Microarray Experiment involving Plants; DOI: https://doi.org/10.25504/FAIRsharing.pvdrmz; Last edited: April 27, 2021, 2:01 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
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MIAME/Plant - adding value to plant microarrray experiments
PubMed citations: 19.
19 articles citing: MIAME/Plant - adding value to plant microarrray experiments
Data Management and Modeling in Plant Biology. PMID:34539712
Quantitative imaging of RNA polymerase II activity in plants reveals the single-cell basis of tissue-wide transcriptional dynamics. PMID:34373604
Improving the completeness of public metadata accompanying omics studies. PMID:33858487
A tribute to Lars Hennig (1970-2018). PMID:30247643
Using semantics for representing experimental protocols. PMID:29132408
The transcriptional response to the olive fruit fly (Bactrocera oleae) reveals extended differences between tolerant and susceptible olive (Olea europaea L.) varieties. PMID:28797083
Cryptochrome 2 extensively regulates transcription of the chloroplast genome in tomato. PMID:28396831
Measures for interoperability of phenotypic data: minimum information requirements and formatting. PMID:27843484
Genetic manipulation of putrescine biosynthesis reprograms the cellular transcriptome and the metabolome. PMID:27188293
Multifunctional crop trait ontology for breeders' data: field book, annotation, data discovery and semantic enrichment of the literature. PMID:22476066
PLEXdb: gene expression resources for plants and plant pathogens. PMID:22084198
PHENOPSIS DB: an information system for Arabidopsis thaliana phenotypic data in an environmental context. PMID:21554668
Meeting Report from the Second "Minimum Information for Biological and Biomedical Investigations" (MIBBI) workshop. PMID:21304730
Robin: an intuitive wizard application for R-based expression microarray quality assessment and analysis. PMID:20388663
Probing the reproducibility of leaf growth and molecular phenotypes: a comparison of three Arabidopsis accessions cultivated in ten laboratories. PMID:20200072
A plant resource and experiment management system based on the Golm Plant Database as a basic tool for omics research. PMID:18495032
E-photosynthesis: a comprehensive modeling approach to understand chlorophyll fluorescence transients and other complex dynamic features of photosynthesis in fluctuating light. PMID:17492490
Cross-talk between singlet oxygen- and hydrogen peroxide-dependent signaling of stress responses in Arabidopsis thaliana. PMID:17197417
Web-based analysis of the mouse transcriptome using Genevestigator. PMID:16790046 -
Plant-based microarray data at the European Bioinformatics Institute. Introducing AtMIAMExpress, a submission tool for Arabidopsis gene expression data to ArrayExpress
PubMed citations: 4.
4 articles citing: Plant-based microarray data at the European Bioinformatics Institute. Introducing AtMIAMExpress, a submission tool for Arabidopsis gene expression data to ArrayExpress
Genome-wide analysis of thiourea-modulated salinity stress-responsive transcripts in seeds of Brassica juncea: identification of signalling and effector components of stress tolerance. PMID:20736293
The absence of ALTERNATIVE OXIDASE1a in Arabidopsis results in acute sensitivity to combined light and drought stress. PMID:18424626
Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA). PMID:16901231
MIAME/Plant - adding value to plant microarrray experiments. PMID:16401339
Tags:
Tags
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dna microarray
metasource: Fairsharing.org
version: FAIRsharing.org: MIAME/Plant; Minimum Information About a Microarray Experiment involving Plants; DOI: https://doi.org/10.25504/FAIRsharing.pvdrmz; Last edited: April 27, 2021, 2:01 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
deoxyribonucleic acid
metasource: Fairsharing.org
version: FAIRsharing.org: MIAME/Plant; Minimum Information About a Microarray Experiment involving Plants; DOI: https://doi.org/10.25504/FAIRsharing.pvdrmz; Last edited: April 27, 2021, 2:01 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
gene expression data
metasource: Fairsharing.org
version: FAIRsharing.org: MIAME/Plant; Minimum Information About a Microarray Experiment involving Plants; DOI: https://doi.org/10.25504/FAIRsharing.pvdrmz; Last edited: April 27, 2021, 2:01 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
genome
metasource: Fairsharing.org
version: FAIRsharing.org: MIAME/Plant; Minimum Information About a Microarray Experiment involving Plants; DOI: https://doi.org/10.25504/FAIRsharing.pvdrmz; Last edited: April 27, 2021, 2:01 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
nucleic acid hybridization
metasource: Fairsharing.org
version: FAIRsharing.org: MIAME/Plant; Minimum Information About a Microarray Experiment involving Plants; DOI: https://doi.org/10.25504/FAIRsharing.pvdrmz; Last edited: April 27, 2021, 2:01 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
ribonucleic acid
metasource: Fairsharing.org
version: FAIRsharing.org: MIAME/Plant; Minimum Information About a Microarray Experiment involving Plants; DOI: https://doi.org/10.25504/FAIRsharing.pvdrmz; Last edited: April 27, 2021, 2:01 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
Tags
More detailed information about this field from each metasource.
dna microarray
metasource: Fairsharing.orgversion: FAIRsharing.org: MIAME/Plant; Minimum Information About a Microarray Experiment involving Plants; DOI: https://doi.org/10.25504/FAIRsharing.pvdrmz; Last edited: April 27, 2021, 2:01 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
deoxyribonucleic acid
metasource: Fairsharing.orgversion: FAIRsharing.org: MIAME/Plant; Minimum Information About a Microarray Experiment involving Plants; DOI: https://doi.org/10.25504/FAIRsharing.pvdrmz; Last edited: April 27, 2021, 2:01 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
gene expression data
metasource: Fairsharing.orgversion: FAIRsharing.org: MIAME/Plant; Minimum Information About a Microarray Experiment involving Plants; DOI: https://doi.org/10.25504/FAIRsharing.pvdrmz; Last edited: April 27, 2021, 2:01 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
genome
metasource: Fairsharing.orgversion: FAIRsharing.org: MIAME/Plant; Minimum Information About a Microarray Experiment involving Plants; DOI: https://doi.org/10.25504/FAIRsharing.pvdrmz; Last edited: April 27, 2021, 2:01 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
nucleic acid hybridization
metasource: Fairsharing.orgversion: FAIRsharing.org: MIAME/Plant; Minimum Information About a Microarray Experiment involving Plants; DOI: https://doi.org/10.25504/FAIRsharing.pvdrmz; Last edited: April 27, 2021, 2:01 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
ribonucleic acid
metasource: Fairsharing.orgversion: FAIRsharing.org: MIAME/Plant; Minimum Information About a Microarray Experiment involving Plants; DOI: https://doi.org/10.25504/FAIRsharing.pvdrmz; Last edited: April 27, 2021, 2:01 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
dna microarray dna gene expression genome nucleic acid hybridization rna
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