JGI Genome Portal
Other names: jgi_genome_portal
The JGI Genome Portal provides a unified access point to all JGI genomic databases and analytical tools. A user can find all DOE JGI sequencing projects and their status, search for and download assemblies and annotations of sequenced genomes, and interactively explore those genomes and compare them with other sequenced microbes, fungi, plants or metagenomes using specialized systems tailored to each particular class of organisms.
Description
More detailed information about this field from each metasource.
The JGI Genome Portal provides a unified access point to all JGI genomic databases and analytical tools. A user can find all DOE JGI sequencing projects and their status, search for and download assemblies and annotations of sequenced genomes, and interactively explore those genomes and compare them with other sequenced microbes, fungi, plants or metagenomes using specialized systems tailored to each particular class of organisms.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:03.746323
Webpage:
http://genome.jgi.doe.gov/Webpage
More detailed information about this field from each metasource.
Publications:
Publications
More detailed information about this field from each metasource.
The genome portal of the Department of Energy Joint Genome Institute
PMID: 22110030
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:03.746323
Publications
More detailed information about this field from each metasource.
The genome portal of the Department of Energy Joint Genome Institute
PMID: 22110030
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:03.746323
-
The genome portal of the Department of Energy Joint Genome Institute
PubMed citations: 212.
212 articles citing: The genome portal of the Department of Energy Joint Genome Institute
The TCP transcription factor HvTB2 heterodimerizes with VRS5 and controls spike architecture in barley. PMID:35254529
Genome-Wide Identification, Characterization and Expression Analysis of Soybean CHYR Gene Family. PMID:34830077
Energy homeostasis is a conserved process: Evidence from Paracoccus denitrificans' response to acute changes in energy demand. PMID:34748578
Comparative Genomic Analysis of the DUF34 Protein Family Suggests Role as a Metal Ion Chaperone or Insertase. PMID:34572495
Tiara: Deep learning-based classification system for eukaryotic sequences. PMID:34570171
Genomic Analysis of Sarcomyxa edulis Reveals the Basis of Its Medicinal Properties and Evolutionary Relationships. PMID:34276589
De novo genome sequencing of mycoparasite Mycogone perniciosa strain MgR1 sheds new light on its biological complexity. PMID:34138459
Protein Structure Prediction: Conventional and Deep Learning Perspectives. PMID:34050498
Integrating Systems and Synthetic Biology to Understand and Engineer Microbiomes. PMID:33781078
The diversity and evolution of microbial dissimilatory phosphite oxidation. PMID:33688048
Genome sequence of the oyster mushroom Pleurotus ostreatus strain PC9. PMID:33585864
Genomic analyses of two Italian oyster mushroom Pleurotus pulmonarius strains. PMID:33585863
Design of a diagnostic system based on molecular markers derived from the ascomycetes pan-genome analysis: The case of Fusarium dieback disease. PMID:33507916
Phosphate availability and ectomycorrhizal symbiosis with Pinus sylvestris have independent effects on the Paxillus involutus transcriptome. PMID:33200348
Host Adaptation Predisposes Pseudomonas aeruginosa to Type VI Secretion System-Mediated Predation by the Burkholderia cepacia Complex. PMID:32755549
Diazotroph Genomes and Their Seasonal Dynamics in a Stratified Humic Bog Lake. PMID:32714313
A WD40 Protein Encoding Gene Fvcpc2 Positively Regulates Mushroom Development and Yield in Flammulina velutipes. PMID:32273873
Hybridization and introgression drive genome evolution of Dutch elm disease pathogens. PMID:32123324
Genomic adaptations in information processing underpin trophic strategy in a whole-ecosystem nutrient enrichment experiment. PMID:31989922
Integrative transcriptome analysis discloses the molecular basis of a heterogeneous fungal phytopathogen complex, Rhizoctonia solani AG-1 subgroups. PMID:31873088
Bidirectional histone-gene promoters in Aspergillus: characterization and application for multi-gene expression. PMID:31867115
A thraustochytrid-specific lipase/phospholipase with unique positional specificity contributes to microbial competition and fatty acid acquisition from the environment. PMID:31705036
Zombie Cells, Composite Cells of Fungal-Human Keratinocytes of Plantar Hyperkeratosis-Like Lesions. PMID:31376042
Amplicon sequencing of 42 nuclear loci supports directional gene flow between South Pacific populations of a hydrothermal vent limpet. PMID:31312428
New kids on the block: emerging oleaginous yeast of biotechnological importance. PMID:31294158
Wavelet-Based Genomic Signal Processing for Centromere Identification and Hypothesis Generation. PMID:31214244
Organelle Studies and Proteome Analyses of Mitochondria and Plastids Fractions from the Diatom Thalassiosira pseudonana. PMID:31179502
Genome Analysis of Hypomyces perniciosus, the Causal Agent of Wet Bubble Disease of Button Mushroom (Agaricus bisporus). PMID:31146507
Genome description of Phlebia radiata 79 with comparative genomics analysis on lignocellulose decomposition machinery of phlebioid fungi. PMID:31138126
Multi-Phenotype Association Decomposition: Unraveling Complex Gene-Phenotype Relationships. PMID:31134130
Fungiculture in Termites Is Associated with a Mycolytic Gut Bacterial Community. PMID:31092601
Positive Selection Evidence in Xylose-Related Genes Suggests Methylglyoxal Reductase as a Target for the Improvement of Yeasts' Fermentation in Industry. PMID:31070742
Mitotic Recombination and Rapid Genome Evolution in the Invasive Forest Pathogen Phytophthora ramorum. PMID:30862749
traG Gene Is Conserved across Mesorhizobium spp. Able to Nodulate the Same Host Plant and Expressed in Response to Root Exudates. PMID:30834262
In silico analysis of fungal small RNA accumulation reveals putative plant mRNA targets in the symbiosis between an arbuscular mycorrhizal fungus and its host plant. PMID:30832582
Invertible promoters mediate bacterial phase variation, antibiotic resistance, and host adaptation in the gut. PMID:30630933
Functional divergence of annotated l-isoaspartate O-methyltransferases in an α-proteobacterium. PMID:30578298
Inside Plectosphaerellaceae. PMID:30518989
The gold-standard genome of Aspergillus niger NRRL 3 enables a detailed view of the diversity of sugar catabolism in fungi. PMID:30425417
Discovery of microRNA-like RNAs during early fruiting body development in the model mushroom Coprinopsis cinerea. PMID:30231028
Insights Into Culturomics of the Rumen Microbiome. PMID:30210474
An Atypical Mechanism of Split Intein Molecular Recognition and Folding. PMID:30156841
Defining the genetic components of callus formation: A GWAS approach. PMID:30118526
Identification of clustered organellar short (cos) RNAs and of a conserved family of organellar RNA-binding proteins, the heptatricopeptide repeat proteins, in the malaria parasite. PMID:30102371
Evaluating the mycostimulation potential of select carbon amendments for the degradation of a model PAH by an ascomycete strain enriched from a superfund site. PMID:30003496
A comprehensive review of web-based resources of non-coding RNAs for plant science research. PMID:29989090
Population size changes and selection drive patterns of parallel evolution in a host-virus system. PMID:29703896
Gene duplicates cause hybrid lethality between sympatric species of Mimulus. PMID:29649209
The intracellular distribution of inorganic carbon fixing enzymes does not support the presence of a C4 pathway in the diatom Phaeodactylum tricornutum. PMID:29572588
Microbiome and ecotypic adaption of Holcus lanatus (L.) to extremes of its soil pH range, investigated through transcriptome sequencing. PMID:29554982
The SlZRT1 Gene Encodes a Plasma Membrane-Located ZIP (Zrt-, Irt-Like Protein) Transporter in the Ectomycorrhizal Fungus Suillus luteus. PMID:29234311
Characterization of sulfhydryl oxidase from Aspergillus tubingensis. PMID:29216817
Regulation of mating type switching by the mating type genes and RME1 in Ogataea polymorpha. PMID:29176579
A plant pathology perspective of fungal genome sequencing. PMID:28824836
A genome Tree of Life for the Fungi kingdom. PMID:28808018
Small secreted proteins from the necrotrophic conifer pathogen Heterobasidion annosum s.l. (HaSSPs) induce cell death in Nicotiana benthamiana. PMID:28801666
Evolution of miRNA Tailing by 3' Terminal Uridylyl Transferases in Metazoa. PMID:28633361
Biotechnological Potential of Cold Adapted Pseudoalteromonas spp. Isolated from 'Deep Sea' Sponges. PMID:28629190
Comparative analysis of the predicted secretomes of Rosaceae scab pathogens Venturia inaequalis and V. pirina reveals expanded effector families and putative determinants of host range. PMID:28464870
Functional association prediction by community profiling. PMID:28454776
Emergence and evolution of an interaction between intrinsically disordered proteins. PMID:28398197
Identification of constraints influencing the bacterial genomes evolution in the PVC super-phylum. PMID:28274202
Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus. PMID:28196534
Evolution of the Sterol Biosynthetic Pathway of Pythium insidiosum and Related Oomycetes Contributes to Antifungal Drug Resistance. PMID:28115356
Metagenomic Analysis of Hot Springs in Central India Reveals Hydrocarbon Degrading Thermophiles and Pathways Essential for Survival in Extreme Environments. PMID:28105025
Evolution of Chaperonin Gene Duplication in Stigonematalean Cyanobacteria (Subsection V). PMID:28082600
In silico screening for candidate chassis strains of free fatty acid-producing cyanobacteria. PMID:28056772
SDH6 and SDH7 Contribute to Anchoring Succinate Dehydrogenase to the Inner Mitochondrial Membrane in Arabidopsis thaliana. PMID:28039307
The biosynthetic pathway of 2-azahypoxanthine in fairy-ring forming fungus. PMID:27991529
Arginine deiminase pathway enzymes: evolutionary history in metamonads and other eukaryotes. PMID:27716026
Schizophyllum commune has an extensive and functional alternative splicing repertoire. PMID:27659065
CenH3 evolution reflects meiotic symmetry as predicted by the centromere drive model. PMID:27629066
Genome Anatomy of Pyrenochaeta unguis-hominis UM 256, a Multidrug Resistant Strain Isolated from Skin Scraping. PMID:27626635
Molecular regionalization in the compact brain of the meiofaunal annelid Dinophilus gyrociliatus (Dinophilidae). PMID:27583125
Biochemical and Structural Characterizations of Two Dictyostelium Cellobiohydrolases from the Amoebozoa Kingdom Reveal a High Level of Conservation between Distant Phylogenetic Trees of Life. PMID:27037126
xGDBvm: A Web GUI-Driven Workflow for Annotating Eukaryotic Genomes in the Cloud. PMID:27020957
The Cytoplasmic Carbonic Anhydrases βCA2 and βCA4 Are Required for Optimal Plant Growth at Low CO2. PMID:26993617
Dual RNA-Sequencing of Eucalyptus nitens during Phytophthora cinnamomi Challenge Reveals Pathogen and Host Factors Influencing Compatibility. PMID:26973660
Fungi Contribute Critical but Spatially Varying Roles in Nitrogen and Carbon Cycling in Acid Mine Drainage. PMID:26973616
A secretomic view of woody and nonwoody lignocellulose degradation by Pleurotus ostreatus. PMID:26933449
Conserved properties of individual Ca2+-binding sites in calmodulin. PMID:26884197
The Fungus Tremella mesenterica Encodes the Longest Metallothionein Currently Known: Gene, Protein and Metal Binding Characterization. PMID:26882011
Design of a Split Intein with Exceptional Protein Splicing Activity. PMID:26854538
Independent mitochondrial and nuclear exchanges arising in Rhizophagus irregularis crossed-isolates support the presence of a mitochondrial segregation mechanism. PMID:26803293
Expression Characterization of Stress Genes Under High and Low Temperature Stresses in the Pacific Oyster, Crassostrea gigas. PMID:26746430
Abundance and Biogeography of Picoprasinophyte Ecotypes and Other Phytoplankton in the Eastern North Pacific Ocean. PMID:26729718
Diversity and evolution of ABC proteins in mycorrhiza-forming fungi. PMID:26707138
Genome-wide identification and phylogenetic analysis of plant RNA binding proteins comprising both RNA recognition motifs and contiguous glycine residues. PMID:26589419
RNA-Seq and microarray analysis of the Xenopus inner ear transcriptome discloses orthologous OMIM(®) genes for hereditary disorders of hearing and balance. PMID:26582541
The Distant Siblings-A Phylogenomic Roadmap Illuminates the Origins of Extant Diversity in Fungal Aromatic Polyketide Biosynthesis. PMID:26537223
Restoration of female fertility in Trichoderma reesei QM6a provides the basis for inbreeding in this industrial cellulase producing fungus. PMID:26405457
Ultra-High Density, Transcript-Based Genetic Maps of Pepper Define Recombination in the Genome and Synteny Among Related Species. PMID:26355020
Cadmium induces cadmium-tolerant gene expression in the filamentous fungus Trichoderma harzianum. PMID:26349455
Visualizing genome and systems biology: technologies, tools, implementation techniques and trends, past, present and future. PMID:26309733
Antibiosis functions during interactions of Trichoderma afroharzianum and Trichoderma gamsii with plant pathogenic Rhizoctonia and Pythium. PMID:26231513
Pax2/5/8 and Pax6 alternative splicing events in basal chordates and vertebrates: a focus on paired box domain. PMID:26191073
Proteny: discovering and visualizing statistically significant syntenic clusters at the proteome level. PMID:26116928
Dual Organellar Targeting of Aminoacyl-tRNA Synthetases in Diatoms and Cryptophytes. PMID:25994931
Evolutionary Analysis of the B56 Gene Family of PP2A Regulatory Subunits. PMID:25950761
Molecular conservation of metazoan gut formation: evidence from expression of endomesoderm genes in Capitella teleta (Annelida). PMID:25908956
Functional characterization of the diatom cyclin-dependent kinase A2 as a mitotic regulator reveals plant-like properties in a non-green lineage. PMID:25887918
Inbreeding Affects Gene Expression Differently in Two Self-Incompatible Arabidopsis lyrata Populations with Similar Levels of Inbreeding Depression. PMID:25855783
An ancestral bacterial division system is widespread in eukaryotic mitochondria. PMID:25831547
Genetic diversity of Trichoderma atroviride strains collected in Poland and identification of loci useful in detection of within-species diversity. PMID:25791292
How the necrotrophic fungus Alternaria brassicicola kills plant cells remains an enigma. PMID:25681268
Sequence variation, differential expression, and divergent evolution in starch-related genes among accessions of Arabidopsis thaliana. PMID:25663508
Clustering of two genes putatively involved in cyanate detoxification evolved recently and independently in multiple fungal lineages. PMID:25663439
Computational analysis and low-scale constitutive expression of laccases synthetic genes GlLCC1 from Ganoderma lucidum and POXA 1B from Pleurotus ostreatus in Pichia pastoris. PMID:25611746
Integrative view of α2,3-sialyltransferases (ST3Gal) molecular and functional evolution in deuterostomes: significance of lineage-specific losses. PMID:25534026
The GPCR repertoire in the demosponge Amphimedon queenslandica: insights into the GPCR system at the early divergence of animals. PMID:25528161
Evolutionary link between metazoan RHIM motif and prion-forming domain of fungal heterokaryon incompatibility factor HET-s/HET-s. PMID:25500536
Genome-wide macrosynteny among Fusarium species in the Gibberella fujikuroi complex revealed by amplified fragment length polymorphisms. PMID:25486277
Highly expressed captured genes and cross-kingdom domains present in Helitrons create novel diversity in Pleurotus ostreatus and other fungi. PMID:25480150
Analysis of the Phlebiopsis gigantea genome, transcriptome and secretome provides insight into its pioneer colonization strategies of wood. PMID:25474575
Plastid proteome prediction for diatoms and other algae with secondary plastids of the red lineage. PMID:25438865
Widespread occurrence of organelle genome-encoded 5S rRNAs including permuted molecules. PMID:25429974
The separation between the 5'-3' ends in long RNA molecules is short and nearly constant. PMID:25428360
Nutritional control of body size through FoxO-Ultraspiracle mediated ecdysone biosynthesis. PMID:25421296
Comparison of intracellular and secretion-based strategies for production of human α-galactosidase A in the filamentous fungus Trichoderma reesei. PMID:25344685
Genomes and gene expression across light and productivity gradients in eastern subtropical Pacific microbial communities. PMID:25333462
Gene expression differences among three Neurospora species reveal genes required for sexual reproduction in Neurospora crassa. PMID:25329823
Diversifying selection in the wheat stem rust fungus acts predominantly on pathogen-associated gene families and reveals candidate effectors. PMID:25225496
Phylogenetic analyses and characterization of RNase X25 from Drosophila melanogaster suggest a conserved housekeeping role and additional functions for RNase T2 enzymes in protostomes. PMID:25133712
Erasing the past: a new identity for the Damoclean pathogen causing South American leaf blight of rubber. PMID:25126853
Transcriptomic responses of Phanerochaete chrysosporium to oak acetonic extracts: focus on a new glutathione transferase. PMID:25107961
Antifungal drug resistance evoked via RNAi-dependent epimutations. PMID:25079329
Gene loss rather than gene gain is associated with a host jump from monocots to dicots in the Smut Fungus Melanopsichium pennsylvanicum. PMID:25062916
Transcriptional responses of the Bdtf1-deletion mutant to the phytoalexin brassinin in the necrotrophic fungus Alternaria brassicicola. PMID:25061722
The structural code of cyanobacterial genomes. PMID:25056315
Influence of Populus genotype on gene expression by the wood decay fungus Phanerochaete chrysosporium. PMID:25015893
Observations on morphologic and genetic diversity in populations of Filoboletus manipularis (Fungi: Mycenaceae) in southern Viet Nam. PMID:24999440
Frequent, independent transfers of a catabolic gene from bacteria to contrasted filamentous eukaryotes. PMID:24990676
Genome sequencing of four Aureobasidium pullulans varieties: biotechnological potential, stress tolerance, and description of new species. PMID:24984952
Comparative transcriptome analysis of four prymnesiophyte algae. PMID:24926657
Merging metagenomics and geochemistry reveals environmental controls on biological diversity and evolution. PMID:24886397
Methylated glycans as conserved targets of animal and fungal innate defense. PMID:24879441
Klebsormidium flaccidum genome reveals primary factors for plant terrestrial adaptation. PMID:24865297
From all to (nearly) none: Tracing adaptin evolution in Fungi. PMID:24843829
A naturally occurring, noncanonical GTP aptamer made of simple tandem repeats. PMID:24824832
Zearalenone lactonohydrolase activity in Hypocreales and its evolutionary relationships within the epoxide hydrolase subset of a/b-hydrolases. PMID:24708405
Discovering functions of unannotated genes from a transcriptome survey of wild fungal isolates. PMID:24692637
F9 fimbriae of uropathogenic Escherichia coli are expressed at low temperature and recognise Galβ1-3GlcNAc-containing glycans. PMID:24671091
Identification of mycoparasitism-related genes against the phytopathogen Sclerotinia sclerotiorum through transcriptome and expression profile analysis in Trichoderma harzianum. PMID:24635846
Genome and transcriptome analysis of the basidiomycetous yeast Pseudozyma antarctica producing extracellular glycolipids, mannosylerythritol lipids. PMID:24586250
Genome Sequence of the Mucoromycotina Fungus Umbelopsis isabellina, an Effective Producer of Lipids. PMID:24578268
Origin and evolution of metal P-type ATPases in Plantae (Archaeplastida). PMID:24575101
Point mutation of the xylose reductase (XR) gene reduces xylitol accumulation and increases citric acid production in Aspergillus carbonarius. PMID:24570325
Transcriptome profile of Trichoderma harzianum IOC-3844 induced by sugarcane bagasse. PMID:24558413
The unfolded protein response (UPR) pathway in Cryptococcus. PMID:24504058
Genome-scale analysis of demographic history and adaptive selection. PMID:24474201
Temporal alterations in the secretome of the selective ligninolytic fungus Ceriporiopsis subvermispora during growth on aspen wood reveal this organism's strategy for degrading lignocellulose. PMID:24441164
Automated alignment-based curation of gene models in filamentous fungi. PMID:24433567
Correction: Comparative analysis of fungal genomes reveals different plant cell wall degrading capacity in fungi. PMID:24422981
Pseudogenization in pathogenic fungi with different host plants and lifestyles might reflect their evolutionary past. PMID:24393451
Characterization of cytokinin signaling and homeostasis gene families in two hardwood tree species: Populus trichocarpa and Prunus persica. PMID:24341635
MycoCosm portal: gearing up for 1000 fungal genomes. PMID:24297253
Structural and gene expression analyses of uptake hydrogenases and other proteins involved in nitrogenase protection in Frankia. PMID:24287649
Genome-wide identification and expression analysis of the mitogen-activated protein kinase gene family from banana suggest involvement of specific members in different stages of fruit ripening. PMID:24275941
A comparative hidden Markov model analysis pipeline identifies proteins characteristic of cereal-infecting fungi. PMID:24252298
The genome portal of the Department of Energy Joint Genome Institute: 2014 updates. PMID:24225321
Industrial robustness: understanding the mechanism of tolerance for the Populus hydrolysate-tolerant mutant strain of Clostridium thermocellum. PMID:24205326
Phytophthora have distinct endogenous small RNA populations that include short interfering and microRNAs. PMID:24204767
Pannexin1 channel proteins in the zebrafish retina have shared and unique properties. PMID:24194896
Signature protein of the PVC superphylum. PMID:24185849
Strategies for mining fungal natural products. PMID:24146366
Fungal genomes mining to discover novel sterol esterases and lipases as catalysts. PMID:24138290
Chlamydomonas ODA10 is a conserved axonemal protein that plays a unique role in outer dynein arm assembly. PMID:24088566
Assessment and reconstruction of novel HSP90 genes: duplications, gains and losses in fungal and animal lineages. PMID:24066039
Genome and transcriptome sequencing of the halophilic fungus Wallemia ichthyophaga: haloadaptations present and absent. PMID:24034603
Simple and efficient recycling of fungal selectable marker genes with the Cre-loxP recombination system via anastomosis. PMID:24007936
Whole genome duplication and enrichment of metal cation transporters revealed by de novo genome sequencing of extremely halotolerant black yeast Hortaea werneckii. PMID:23977017
A novel type of light-harvesting antenna protein of red algal origin in algae with secondary plastids. PMID:23899289
The basidiomycete Ustilago maydis has two plasma membrane H⁺-ATPases related to fungi and plants. PMID:23832544
Evolution of protein indels in plants, animals and fungi. PMID:23826714
Genome Sequences of Industrially Relevant Saccharomyces cerevisiae Strain M3707, Isolated from a Sample of Distillers Yeast and Four Haploid Derivatives. PMID:23792743
Identification and analysis of putative homologues of mechanosensitive channels in pathogenic protozoa. PMID:23785469
Molecular evolution of peptidergic signaling systems in bilaterians. PMID:23671109
Transformation of the fungus Absidia glauca by complementation of a methionine-auxotrophic strain affected in the homoserine-acetyltransferase gene. PMID:23650600
Comparative analysis of fungal genomes reveals different plant cell wall degrading capacity in fungi. PMID:23617724
Computational identification of functional introns: high positional conservation of introns that harbor RNA genes. PMID:23605046
Conserved MIP receptor-ligand pair regulates Platynereis larval settlement. PMID:23569279
RNAseq versus genome-predicted transcriptomes: a large population of novel transcripts identified in an Illumina-454 Hydra transcriptome. PMID:23530871
5'-Serial Analysis of Gene Expression studies reveal a transcriptomic switch during fruiting body development in Coprinopsis cinerea. PMID:23514374
Metabolites associated with adaptation of microorganisms to an acidophilic, metal-rich environment identified by stable-isotope-enabled metabolomics. PMID:23481603
PacC and pH-dependent transcriptome of the mycotrophic fungus Trichoderma virens. PMID:23445374
Gene make-up: rapid and massive intron gains after horizontal transfer of a bacterial α-amylase gene to Basidiomycetes. PMID:23405862
Chaperone-usher fimbriae of Escherichia coli. PMID:23382825
Comparative genome structure, secondary metabolite, and effector coding capacity across Cochliobolus pathogens. PMID:23357949
Comparative genomics of the lipid-body-membrane proteins oleosin, caleosin and steroleosin in magnoliophyte, lycophyte and bryophyte. PMID:23317702
Structural, biochemical, and computational characterization of the glycoside hydrolase family 7 cellobiohydrolase of the tree-killing fungus Heterobasidion irregulare. PMID:23303184
Expanded functional diversity of shaker K(+) channels in cnidarians is driven by gene expansion. PMID:23251506
Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi. PMID:23236275
The genomes of the fungal plant pathogens Cladosporium fulvum and Dothistroma septosporum reveal adaptation to different hosts and lifestyles but also signatures of common ancestry. PMID:23209441
OrysPSSP: a comparative platform for small secreted proteins from rice and other plants. PMID:23203890
Four novel cellulose synthase (CESA) genes from Birch (Betula platyphylla Suk.) involved in primary and secondary cell Wall biosynthesis. PMID:23202892
CFGP 2.0: a versatile web-based platform for supporting comparative and evolutionary genomics of fungi and Oomycetes. PMID:23193288
OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologs. PMID:23180791
Transcription factor Amr1 induces melanin biosynthesis and suppresses virulence in Alternaria brassicicola. PMID:23133370
The function and evolution of the Aspergillus genome. PMID:23084572
Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche. PMID:23045686
Contribution of phage-derived genomic islands to the virulence of facultative bacterial pathogens. PMID:23035931
Comparative pathogenomics reveals horizontally acquired novel virulence genes in fungi infecting cereal hosts. PMID:23028337
Biotin-binding proteins in the defense of mushrooms against predators and parasites. PMID:23001676
Deep insight into the Ganoderma lucidum by comprehensive analysis of its transcriptome. PMID:22952861
Novel traits of Trichoderma predicted through the analysis of its secretome. PMID:22924408
Thermoascus aurantiacus is a promising source of enzymes for biomass deconstruction under thermophilic conditions. PMID:22839529
Genome sequencing and mapping reveal loss of heterozygosity as a mechanism for rapid adaptation in the vegetable pathogen Phytophthora capsici. PMID:22712506
The eIF4F and eIFiso4F Complexes of Plants: An Evolutionary Perspective. PMID:22611336
Perspectives in PDK1 evolution: insights from photosynthetic and non-photosynthetic organisms. PMID:22580698
The ins and outs of algal metal transport. PMID:22569643
In-depth proteomic analysis of a mollusc shell: acid-soluble and acid-insoluble matrix of the limpet Lottia gigantea. PMID:22540284
The 2012 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection. PMID:22144685
Tags:
Tags
More detailed information about this field from each metasource.
metagenomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:03.746323
plant biology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:03.746323
sequence assembly
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:03.746323
model organisms
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:03.746323
Tags
More detailed information about this field from each metasource.
metagenomics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:03.746323
plant biology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:03.746323
sequence assembly
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:03.746323
model organisms
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:03.746323
metagenomics plant biology sequence assembly model organisms
Need help integrating and/or managing biomedical data?