R39310 last accessed: 2022-11-04

Genomes OnLine Database (GOLD)
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

GOLDB
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:33.975185

goldb
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:33.975185

Other names: GOLD, Genomes OnLine Database (GOLD), GOLDB, goldb

The Genomes Online Database provides access to information regarding genome and metagenome sequencing projects, and their associated metadata, around the world. Information in GOLD is organized into four levels: Study, Biosample/Organism, Sequencing Project and Analysis Project.

Webpage:

https://gold.jgi.doe.gov/

Licence:

Name: GOLD Data Usage Policy
URL: https://gold.jgi.doe.gov/usagepolicy

Publications: (7)

Publications
More detailed information about this field from each metasource.

The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata
PMID: 19914934
metasource: Fairsharing.org
version: FAIRsharing.org: GOLD; Genomes OnLine Database; DOI: https://doi.org/10.25504/FAIRsharing.5q1p14; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata
PMID: 17981842
metasource: Fairsharing.org
version: FAIRsharing.org: GOLD; Genomes OnLine Database; DOI: https://doi.org/10.25504/FAIRsharing.5q1p14; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

Genomes OnLine Database (GOLD): a monitor of genome projects world-wide
PMID: 11125068
metasource: Fairsharing.org
version: FAIRsharing.org: GOLD; Genomes OnLine Database; DOI: https://doi.org/10.25504/FAIRsharing.5q1p14; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

Genomes OnLine database (GOLD) v.7: updates and new features
PMID: 30357420
metasource: Fairsharing.org
version: FAIRsharing.org: GOLD; Genomes OnLine Database; DOI: https://doi.org/10.25504/FAIRsharing.5q1p14; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

Genomes OnLine Database (GOLD) v.8: overview and updates
PMID: 33152092
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:33.975185

Genomes OnLine Database (GOLD 1.0): a monitor of complete and ongoing genome projects world-wide
PMID: 10498782
metasource: Fairsharing.org
version: FAIRsharing.org: GOLD; Genomes OnLine Database; DOI: https://doi.org/10.25504/FAIRsharing.5q1p14; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

http://dx.doi.org/10.1093/nar/gkaa983
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata PubMed citations: 264.

264 articles citing: The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata

Distinctive roles between rumen epimural and content bacterial communities on beef cattle feed efficiency: A combined analysis. PMID:34934993
PacBio-Based Protocol for Bacterial Genome Assembly. PMID:33961214
A complete and flexible workflow for metaproteomics data analysis based on MetaProteomeAnalyzer and Prophane. PMID:32859984
Expanding Tiny Earth to genomics: a bioinformatics approach for an undergraduate class to characterize antagonistic strains. PMID:31971561
Loci Encoding Compounds Potentially Active against Drug-Resistant Pathogens amidst a Decreasing Pool of Novel Antibiotics. PMID:31540982
High precision protein functional site detection using 3D convolutional neural networks. PMID:31051039
Aquella oligotrophica gen. nov. sp. nov.: A new member of the family Neisseriaceae isolated from laboratory tap water. PMID:30656855
Global genomic similarity and core genome sequence diversity of the Streptococcus genus as a toolkit to identify closely related bacterial species in complex environments. PMID:30656069
The complete genomic sequence of a novel cold-adapted bacterium, Planococcus maritimus Y42, isolated from crude oil-contaminated soil. PMID:30338026
Complete genome sequence of the halophile bacterium Kushneria konosiri X49T, isolated from salt-fermented Konosirus punctatus. PMID:30305867
MetaHCR: a web-enabled metagenome data management system for hydrocarbon resources. PMID:30212909
Systematic discovery of uncharacterized transcription factors in Escherichia coli K-12 MG1655. PMID:30137486
The Nothoaspis amazoniensis Complete Mitogenome: A Comparative and Phylogenetic Analysis. PMID:29584648
[Pathogen analysis in patients with diabetic foot osteomyelitis using 16S rRNA high-throughput sequencing]. PMID:29180323
ProLanGO: Protein Function Prediction Using Neural Machine Translation Based on a Recurrent Neural Network. PMID:29039790
Actinoalloteichus fjordicus sp. nov. isolated from marine sponges: phenotypic, chemotaxonomic and genomic characterisation. PMID:28770445
Complete genome sequence of the actinomycete Actinoalloteichus hymeniacidonis type strain HPA 177T isolated from a marine sponge. PMID:28031775
Genome sequence and overview of Oligoflexus tunisiensis Shr3T in the eighth class Oligoflexia of the phylum Proteobacteria. PMID:27999625
Genomes OnLine Database (GOLD) v.6: data updates and feature enhancements. PMID:27794040
Complete genome sequences of Geobacillus sp. WCH70, a thermophilic strain isolated from wood compost. PMID:27123157
Genome sequence of Shimia str. SK013, a representative of the Roseobacter group isolated from marine sediment. PMID:27042262
High-quality draft genome sequence of a new phytase-producing microorganism Pantoea sp. 3.5.1. PMID:26566420
Complete genome sequences of Geobacillus sp. Y412MC52, a xylan-degrading strain isolated from obsidian hot spring in Yellowstone National Park. PMID:26500717
Complete genome sequence of Geobacillus thermoglucosidasius C56-YS93, a novel biomass degrader isolated from obsidian hot spring in Yellowstone National Park. PMID:26442136
Genome sequence of the haloarchaeon Haloterrigena jeotgali type strain A29(T) isolated from salt-fermented food. PMID:26380637
Draft genome sequence of the extremely halophilic archaeon Haladaptatus cibarius type strain D43(T) isolated from fermented seafood. PMID:26380039
Integrated protein function prediction by mining function associations, sequences, and protein-protein and gene-gene interaction networks. PMID:26370280
High-quality draft genome sequences of five anaerobic oral bacteria and description of Peptoanaerobacter stomatis gen. nov., sp. nov., a new member of the family Peptostreptococcaceae. PMID:26221418
A Novel Quality Measure and Correction Procedure for the Annotation of Microbial Translation Initiation Sites. PMID:26204119
Genome sequence of the soil bacterium Corynebacterium callunae type strain DSM 20147(T). PMID:26203323
Standards in Genomic Sciences: New beginnings to reflect the association between the journal and BMC. PMID:25780494
Genome sequence and description of the mosquitocidal and heavy metal tolerant strain Lysinibacillus sphaericus CBAM5. PMID:25685257
The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification. PMID:25348402
Complete Genome Sequence of the RmInt1 Group II Intronless Sinorhizobium meliloti Strain RMO17. PMID:25301650
A phylogenomic census of molecular functions identifies modern thermophilic archaea as the most ancient form of cellular life. PMID:25249790
Complete genome sequence of the Phaeobacter gallaeciensis type strain CIP 105210(T) (= DSM 26640(T) = BS107(T)). PMID:25197473
Draft genome sequences and description of Lactobacillus rhamnosus strains L31, L34, and L35. PMID:25197459
Genomic Encyclopedia of Type Strains, Phase I: The one thousand microbial genomes (KMG-I) project. PMID:25197443
Genome sequence of the squalene-degrading bacterium Corynebacterium terpenotabidum type strain Y-11(T) (= DSM 44721(T)). PMID:25197436
Genome sequence of the chromate-resistant bacterium Leucobacter salsicius type strain M1-8(T.). PMID:25197435
A tree of cellular life inferred from a genomic census of molecular functions. PMID:25128982
Genome sequence of Phaeobacter inhibens type strain (T5(T)), a secondary metabolite producing representative of the marine Roseobacter clade, and emendation of the species description of Phaeobacter inhibens. PMID:24976890
Standardized metadata for human pathogen/vector genomic sequences. PMID:24936976
A Gene-By-Gene Approach to Bacterial Population Genomics: Whole Genome MLST of Campylobacter. PMID:24704917
Hierarchical partitioning of metazoan protein conservation profiles provides new functional insights. PMID:24594619
Draft genome sequence of Rubidibacter lacunae strain KORDI 51-2(T), a cyanobacterium isolated from seawater of Chuuk lagoon. PMID:24501656
Genome sequence of Phaeobacter daeponensis type strain (DSM 23529(T)), a facultatively anaerobic bacterium isolated from marine sediment, and emendation of Phaeobacter daeponensis. PMID:24501652
Genome sequence and description of the heavy metal tolerant bacterium Lysinibacillus sphaericus strain OT4b.31. PMID:24501644
Draft genome sequence of Francisella tularensis subsp. holarctica BD11-00177. PMID:24501637
Genome sequence of the marine bacterium Corynebacterium maris type strain Coryn-1(T) (= DSM 45190(T)). PMID:24501635
Draft Genome Sequence of Amphibacillus jilinensis Y1(T), a Facultatively Anaerobic, Alkaliphilic and Halotolerant Bacterium. PMID:24501633
Non-contiguous finished genome sequence of plant-growth promoting Serratia proteamaculans S4. PMID:24501629
Genomic analysis of Chthonomonas calidirosea, the first sequenced isolate of the phylum Armatimonadetes. PMID:24477196
Evolutionary dynamics of overlapped genes in Salmonella. PMID:24312259
Draft Genome Sequence of Beta-Hemolytic Streptococcus iniae KCTC 11634. PMID:24201192
Genome Sequence of Streptococcus parauberis Strain KCTC11980, Isolated from Diseased Paralichthys olivaceus. PMID:24092782
Genome Sequence of Marine Bacterium Idiomarina sp. Strain 28-8, Isolated from Korean Ark Shells. PMID:24092779
Toward 959 nematode genomes. PMID:24058822
Genome Sequence of Saccharopolyspora erythraea D, a Hyperproducer of Erythromycin. PMID:24051314
Genome sequence of the moderately halophilic bacterium Salinicoccus carnicancri type strain Crm(T) (= DSM 23852(T)). PMID:23991257
Complete genome sequence of Streptococcus agalactiae strain SA20-06, a fish pathogen associated to meningoencephalitis outbreaks. PMID:23991251
Common and pathogen-specific virulence factors are different in function and structure. PMID:23863604
A call for an international network of genomic observatories (GOs). PMID:23587188
Genome sequencing of bacteria: sequencing, de novo assembly and rapid analysis using open source tools. PMID:23547799
Complete genome sequence of the plant-associated Serratia plymuthica strain AS13. PMID:23450001
Complete genome sequence of Treponema pallidum strain DAL-1. PMID:23449808
Complete Genome Sequence of the Alfalfa Symbiont Sinorhizobium/Ensifer meliloti Strain GR4. PMID:23409262
The Metadata Coverage Index (MCI): A standardized metric for quantifying database metadata richness. PMID:23409217
Complete genome sequence of Corynebacterium pseudotuberculosis biovar ovis strain P54B96 isolated from antelope in South Africa obtained by rapid next generation sequencing technology. PMID:23408795
Genome sequence of the halotolerant bacterium Corynebacterium halotolerans type strain YIM 70093(T) (= DSM 44683(T)). PMID:23408721
Complete Genome Sequence of Paenibacillus strain Y4.12MC10, a Novel Paenibacillus lautus strain Isolated from Obsidian Hot Spring in Yellowstone National Park. PMID:23408395
Complete genome sequence of Thauera aminoaromatica strain MZ1T. PMID:23407619
Complete genome sequence of the motile actinomycete Actinoplanes missouriensis 431(T) (= NBRC 102363(T)). PMID:23407331
A large-scale evaluation of computational protein function prediction. PMID:23353650
Applying Shannon's information theory to bacterial and phage genomes and metagenomes. PMID:23301154
Exploitation of genomics in fungicide research: current status and future perspectives. PMID:23157348
Complete genome sequence of the thermophilic, piezophilic, heterotrophic bacterium Marinitoga piezophila KA3. PMID:23045491
Comparative genomics guided discovery of two missing archaeal enzyme families involved in the biosynthesis of the pterin moiety of tetrahydromethanopterin and tetrahydrofolate. PMID:22931285
The complete genome sequence of Natrinema sp. J7-2, a haloarchaeon capable of growth on synthetic media without amino acid supplements. PMID:22911826
Genome sequence of the ocean sediment bacterium Saccharomonospora marina type strain (XMU15(T)). PMID:22768369
Complete genome sequence of Dehalogenimonas lykanthroporepellens type strain (BL-DC-9(T)) and comparison to "Dehalococcoides" strains. PMID:22768368
Genome sequence of the moderately thermophilic, amino-acid-degrading and sulfur-reducing bacterium Thermovirga lienii type strain (Cas60314(T)). PMID:22768366
Genome sequence of the soil bacterium Saccharomonospora azurea type strain (NA-128(T)). PMID:22768365
Complete genome sequence of Serratia plymuthica strain AS12. PMID:22768360
Complete genome sequence of the thermophilic sulfate-reducing ocean bacterium Thermodesulfatator indicus type strain (CIR29812(T)). PMID:22768359
Complete genome sequence of the aquatic bacterium Runella slithyformis type strain (LSU 4(T)). PMID:22768358
Event extraction of bacteria biotopes: a knowledge-intensive NLP-based approach. PMID:22759462
BioNLP Shared Task--The Bacteria Track. PMID:22759457
A hybrid approach for the automated finishing of bacterial genomes. PMID:22750883
Complete Genome Sequence of Clostridium clariflavum DSM 19732. PMID:22675603
Complete genome sequence of the sulfur compounds oxidizing chemolithoautotroph Sulfuricurvum kujiense type strain (YK-1(T)). PMID:22675602
Complete genome sequence of Polynucleobacter necessarius subsp. asymbioticus type strain (QLW-P1DMWA-1(T)). PMID:22675600
Complete genome sequence of the rapeseed plant-growth promoting Serratia plymuthica strain AS9. PMID:22675598
Complete genome sequence of Halopiger xanaduensis type strain (SH-6(T)). PMID:22675596
Complete genome sequence of the aerobic, heterotroph Marinithermus hydrothermalis type strain (T1(T)) from a deep-sea hydrothermal vent chimney. PMID:22675595
Complete genome sequence of the thermophilic sulfur-reducer Desulfurobacterium thermolithotrophum type strain (BSA(T)) from a deep-sea hydrothermal vent. PMID:22675590
Genome sequence of the filamentous, gliding Thiothrix nivea neotype strain (JP2(T)). PMID:22675589
High quality draft genome sequence of Segniliparus rugosus CDC 945(T)= (ATCC BAA-974(T)). PMID:22675588
Complete genome sequence of the halophilic and highly halotolerant Chromohalobacter salexigens type strain (1H11(T)). PMID:22675587
Complete genome sequence of the filamentous gliding predatory bacterium Herpetosiphon aurantiacus type strain (114-95(T)). PMID:22675585
Complete genome sequence of Thioalkalivibrio sp. K90mix. PMID:22675584
Complete genome sequence of Allochromatium vinosum DSM 180(T). PMID:22675582
Complete genome sequence of Hirschia baltica type strain (IFAM 1418(T)). PMID:22675580
The state of standards in genomic sciences. PMID:22675577
The use of evolutionary patterns in protein annotation. PMID:22633559
Predicting antigenicity of proteins in a bacterial proteome; a protein microarray and naïve Bayes classification approach. PMID:22589097
Biochemical characterization of a novel haloalkane dehalogenase from a cold-adapted bacterium. PMID:22582053
Genome sequence of Peptoniphilus rhinitidis 1-13T, an anaerobic coccus strain isolated from clinical specimens. PMID:22493209
Genome sequence of Lactobacillus fructivorans KCTC 3543. PMID:22461550
BLANNOTATOR: enhanced homology-based function prediction of bacterial proteins. PMID:22335941
A vast collection of microbial genes that are toxic to bacteria. PMID:22300632
A novel extracellular metallopeptidase domain shared by animal host-associated mutualistic and pathogenic microbes. PMID:22299034
IMG: the Integrated Microbial Genomes database and comparative analysis system. PMID:22194640
Meeting report: the 2 annual argonne soils workshop, argonne national laboratory, chicago illinois, USA, october 6-8, 2010. PMID:22180822
Solving the Problem: Genome Annotation Standards before the Data Deluge. PMID:22180819
Complete genome sequence of Mycobacterium sp. strain (Spyr1) and reclassification to Mycobacterium gilvum Spyr1. PMID:22180818
Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and Rainey, 2010. PMID:22180816
Complete genome sequence of Tolumonas auensis type strain (TA 4). PMID:22180815
Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21). PMID:22180814
Genome sequence of the moderately thermophilic halophile Flexistipes sinusarabici strain (MAS10). PMID:22180813
Complete genome sequence of Ferroglobus placidus AEDII12DO. PMID:22180810
Non-contiguous finished genome sequence of the opportunistic oral pathogen Prevotella multisaccharivorax type strain (PPPA20). PMID:22180809
Complete genome sequence of the gliding, heparinolytic Pedobacter saltans type strain (113). PMID:22180808
Complete genome sequence of the gliding freshwater bacterium Fluviicola taffensis type strain (RW262). PMID:22180807
Complete genome sequence of Staphylothermus hellenicus P8. PMID:22180806
Accurate genome relative abundance estimation based on shotgun metagenomic reads. PMID:22162995
BioProject and BioSample databases at NCBI: facilitating capture and organization of metadata. PMID:22139929
BacMap: an up-to-date electronic atlas of annotated bacterial genomes. PMID:22135301
The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata. PMID:22135293
The genome portal of the Department of Energy Joint Genome Institute. PMID:22110030
Direct-coupling analysis of residue coevolution captures native contacts across many protein families. PMID:22106262
ProRepeat: an integrated repository for studying amino acid tandem repeats in proteins. PMID:22102581
IMG/M: the integrated metagenome data management and comparative analysis system. PMID:22086953
Pattern of amino acid substitutions in transmembrane domains of β-barrel membrane proteins for detecting remote homologs in bacteria and mitochondria. PMID:22069449
Coping with genetic diversity: the contribution of pathogen and human genomics to modern vaccinology. PMID:22030866
Genome sequence of Leuconostoc carnosum KCTC 3525. PMID:21994929
Genome sequence of Lactobacillus versmoldensis KCTC 3814. PMID:21914893
Draft genome sequence of Lactobacillus malefermentans KCTC 3548. PMID:21914865
Genome sequence of Lactobacillus suebicus KCTC 3549. PMID:21914862
diArk 2.0 provides detailed analyses of the ever increasing eukaryotic genome sequencing data. PMID:21906294
Complete genome sequence of the acetate-degrading sulfate reducer Desulfobacca acetoxidans type strain (ASRB2). PMID:21886866
Complete genome sequence of the hyperthermophilic chemolithoautotroph Pyrolobus fumarii type strain (1A). PMID:21886865
Complete genome sequence of Syntrophobotulus glycolicus type strain (FlGlyR). PMID:21886864
Complete genome sequence of Treponema succinifaciens type strain (6091). PMID:21886863
Complete genome sequence of Haliscomenobacter hydrossis type strain (O). PMID:21886862
Complete genome sequence of Tsukamurella paurometabola type strain (no. 33). PMID:21886861
Complete genome sequence of Mahella australiensis type strain (50-1 BON). PMID:21886860
Complete genome sequence of Nitratifractor salsuginis type strain (E9I37-1). PMID:21886859
Complete genome sequence of the extremely halophilic Halanaerobium praevalens type strain (GSL). PMID:21886858
Complete genome sequence of the thermophilic sulfur-reducer Hippea maritima type strain (MH(2)). PMID:21886857
Complete genome sequence of Rhodospirillum rubrum type strain (S1). PMID:21886856
Combined phylogenetic and genomic approaches for the high-throughput study of microbial habitat adaptation. PMID:21872475
Draft genome sequence of Lactobacillus zeae KCTC 3804. PMID:21868802
Recombination and population structure in Salmonella enterica. PMID:21829375
Genome-based studies of marine microorganisms to maximize the diversity of natural products discovery for medical treatments. PMID:21826184
Comparative analyses imply that the enigmatic Sigma factor 54 is a central controller of the bacterial exterior. PMID:21806785
Of woods and webs: possible alternatives to the tree of life for studying genomic fluidity in E. coli. PMID:21774799
Misannotations of rRNA can now generate 90% false positive protein matches in metatranscriptomic studies. PMID:21771858
Draft genome sequence of Lactobacillus mali KCTC 3596. PMID:21742889
Whole-genome sequence of a multidrug-resistant clinical isolate of Acinetobacter lwoffii. PMID:21742884
Genome sequence of Lactobacillus cypricasei KCTC 13900. PMID:21742864
The Genomic Standards Consortium. PMID:21713030
Genome sequence of Leuconostoc pseudomesenteroides KCTC 3652. PMID:21705609
Genome sequence of Acinetobacter sp. strain P8-3-8, isolated from Fistularia commersonii in Vietnam. PMID:21685286
Data shopping in an open marketplace: Introducing the Ontogrator web application for marking up data using ontologies and browsing using facets. PMID:21677865
Non-contiguous finished genome sequence of Bacteroides coprosuis type strain (PC139). PMID:21677860
Complete genome sequence of Cellulophaga lytica type strain (LIM-21). PMID:21677859
Complete genome sequence of Oceanithermus profundus type strain (506). PMID:21677858
Complete genome sequence of Odoribacter splanchnicus type strain (1651/6). PMID:21677857
Complete genome sequence of Bacteroides salanitronis type strain (BL78). PMID:21677856
Complete genome sequence of Desulfurococcus mucosus type strain (O7/1). PMID:21677854
Complete genome sequence of Deinococcus maricopensis type strain (LB-34). PMID:21677853
Complete genome sequence of Riemerella anatipestifer type strain (ATCC 11845). PMID:21677851
Complete genome sequence of Arthrobacter phenanthrenivorans type strain (Sphe3). PMID:21677849
A pilot study of bacterial genes with disrupted ORFs reveals a surprising profusion of protein sequence recoding mediated by ribosomal frameshifting and transcriptional realignment. PMID:21673094
Going deeper: metagenome of a hadopelagic microbial community. PMID:21629664
Evaluating the fidelity of de novo short read metagenomic assembly using simulated data. PMID:21625384
QuartetS: a fast and accurate algorithm for large-scale orthology detection. PMID:21572104
A 5-formyltetrahydrofolate cycloligase paralog from all domains of life: comparative genomic and experimental evidence for a cryptic role in thiamin metabolism. PMID:21538139
PhyleasProg: a user-oriented web server for wide evolutionary analyses. PMID:21531699
Genome sequence of the Spinosyns-producing bacterium Saccharopolyspora spinosa NRRL 18395. PMID:21478350
Complete genome sequence of Desulfobulbus propionicus type strain (1pr3). PMID:21475592
Complete genome sequence of Truepera radiovictrix type strain (RQ-24). PMID:21475591
Complete genome sequence of Weeksella virosa type strain (9751). PMID:21475590
Complete genome sequence of Cellulophaga algicola type strain (IC166). PMID:21475589
Complete genome sequence of Isosphaera pallida type strain (IS1B). PMID:21475588
Complete genome sequence of Calditerrivibrio nitroreducens type strain (Yu37-1). PMID:21475587
Complete genome sequence of Bacteroides helcogenes type strain (P 36-108). PMID:21475586
Complete genome sequence of Paludibacter propionicigenes type strain (WB4). PMID:21475585
Complete genome sequence of "Thioalkalivibrio sulfidophilus" HL-EbGr7. PMID:21475584
Complete genome sequence of Leadbetterella byssophila type strain (4M15). PMID:21475582
PlaNet: combined sequence and expression comparisons across plant networks derived from seven species. PMID:21441431
Functional analysis of archaeal MBF1 by complementation studies in yeast. PMID:21392374
Complete genome sequence of Ferrimonas balearica type strain (PAT). PMID:21304747
Complete genome sequence of 'Thermobaculum terrenum' type strain (YNP1). PMID:21304745
Complete genome sequence of Spirochaeta smaragdinae type strain (SEBR 4228). PMID:21304743
Complete genome sequence of Arcanobacterium haemolyticum type strain (11018). PMID:21304742
Complete genome sequence of Thermosediminibacter oceani type strain (JW/IW-1228P). PMID:21304740
Complete genome sequence of Thermaerobacter marianensis type strain (7p75a). PMID:21304738
Complete genome sequence of Ilyobacter polytropus type strain (CuHbu1). PMID:21304735
Complete genome sequence of Intrasporangium calvum type strain (7 KIP). PMID:21304734
Non-contiguous finished genome sequence of Aminomonas paucivorans type strain (GLU-3). PMID:21304733
Complete genome sequence of Desulfarculus baarsii type strain (2st14). PMID:21304732
Meeting report: GSC M5 roundtable at the 13th International Society for Microbial Ecology meeting in Seattle, WA, USA August 22-27, 2010. PMID:21304725
Meeting Report: Metagenomics, Metadata and MetaAnalysis (M3) at ISMB 2010. PMID:21304724
Meeting Report from the Genomic Standards Consortium (GSC) Workshop 10. PMID:21304723
Meeting Report from the Genomic Standards Consortium (GSC) Workshop 9. PMID:21304722
Complete genome sequence of Archaeoglobus profundus type strain (AV18). PMID:21304717
Complete genome sequence of Thermobispora bispora type strain (R51). PMID:21304716
Complete genome sequence of Arcobacter nitrofigilis type strain (CI). PMID:21304714
Complete genome sequence of Coraliomargarita akajimensis type strain (04OKA010-24). PMID:21304713
Complete genome sequence of Aminobacterium colombiense type strain (ALA-1). PMID:21304712
Complete genome sequence of Denitrovibrio acetiphilus type strain (N2460). PMID:21304711
Complete genome sequence of Brachyspira murdochii type strain (56-150). PMID:21304710
Complete genome sequence of Thermosphaera aggregans type strain (M11TL). PMID:21304709
Complete genome sequence of Sebaldella termitidis type strain (NCTC 11300). PMID:21304705
Complete genome sequence of Conexibacter woesei type strain (ID131577). PMID:21304704
Complete genome sequence of Segniliparus rotundus type strain (CDC 1076). PMID:21304703
Complete genome sequence of Thermocrinis albus type strain (HI 11/12). PMID:21304702
Complete genome sequence of Kribbella flavida type strain (IFO 14399). PMID:21304701
Complete genome sequence of Spirosoma linguale type strain (1). PMID:21304700
Complete genome sequence of Nakamurella multipartita type strain (Y-104). PMID:21304699
Complete genome sequence of Geodermatophilus obscurus type strain (G-20). PMID:21304698
Complete genome sequence of Sulfurospirillum deleyianum type strain (5175). PMID:21304697
Permanent draft genome sequence of Dethiosulfovibrio peptidovorans type strain (SEBR 4207). PMID:21304695
Complete genome sequence of Olsenella uli type strain (VPI D76D-27C). PMID:21304694
Complete genome sequence of Ignisphaera aggregans type strain (AQ1.S1). PMID:21304693
Complete genome sequence of Acetohalobium arabaticum type strain (Z-7288). PMID:21304692
Complete genome sequence of Planctomyces limnophilus type strain (Mü 290). PMID:21304691
Complete genome sequence of Meiothermus silvanus type strain (VI-R2). PMID:21304690
Complete genome sequence of Meiothermus ruber type strain (21). PMID:21304689
Complete genome sequence of Cellulomonas flavigena type strain (134). PMID:21304688
Complete genome sequence of Acidaminococcus fermentans type strain (VR4). PMID:21304687
Complete genome sequence of Haloterrigena turkmenica type strain (4k). PMID:21304683
Complete genome sequence of Haliangium ochraceum type strain (SMP-2). PMID:21304682
Complete genome sequence of Chitinophaga pinensis type strain (UQM 2034). PMID:21304681
Genome sequence of Lactobacillus farciminis KCTC 3681. PMID:21257766
Genomics of microalgae, fuel for the future? PMID:21255351
Genome (re-)annotation and open-source annotation pipelines. PMID:21255336
The genome sequence of Methanohalophilus mahii SLP(T) reveals differences in the energy metabolism among members of the Methanosarcinaceae inhabiting freshwater and saline environments. PMID:21234345
Mutation detection with next-generation resequencing through a mediator genome. PMID:21209874
Genome sequence of Lactobacillus animalis KCTC 3501. PMID:21183665
Gene-centric association analysis for the correlation between the guanine-cytosine content levels and temperature range conditions of prokaryotic species. PMID:21172057
Genome sequence of Lactobacillus coryniformis subsp. coryniformis KCTC 3167. PMID:21148735
BIGSdb: Scalable analysis of bacterial genome variation at the population level. PMID:21143983
In vitro homology search array comprehensively reveals highly conserved genes and their functional characteristics in non-sequenced species. PMID:21143818
Genome Sequence of Leuconostoc gelidum KCTC 3527, Isolated from Kimchi. PMID:21131494
Genome Sequence of Weissella cibaria KACC 11862. PMID:21097615
Genome sequence of Leuconostoc fallax KCTC 3537. PMID:21075921
Clustering metagenomic sequences with interpolated Markov models. PMID:21044341
Genome sequence of Leuconostoc argentinum KCTC 3773. PMID:20952569
Generating and navigating proteome maps using mass spectrometry. PMID:20944666
TADB: a web-based resource for Type 2 toxin-antitoxin loci in bacteria and archaea. PMID:20929871
GreenPhylDB v2.0: comparative and functional genomics in plants. PMID:20864446
MLTreeMap--accurate Maximum Likelihood placement of environmental DNA sequences into taxonomic and functional reference phylogenies. PMID:20687950
Genomic repertoires of DNA-binding transcription factors across the tree of life. PMID:20675356
From complete genome sequence to 'complete' understanding? PMID:20647113
MetaBar - a tool for consistent contextual data acquisition and standards compliant submission. PMID:20591175
VITCOMIC: visualization tool for taxonomic compositions of microbial communities based on 16S rRNA gene sequences. PMID:20565810
A quick guide to large-scale genomic data mining. PMID:20523745
Creation of a genome-wide metabolic pathway database for Populus trichocarpa using a new approach for reconstruction and curation of metabolic pathways for plants. PMID:20522724
SOBA: sequence ontology bioinformatics analysis. PMID:20494974
Evolution of metabolic network organization. PMID:20459825
Rapid pair-wise synteny analysis of large bacterial genomes using web-based GeneOrder4.0. PMID:20178631
The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata PubMed citations: 190.

190 articles citing: The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata

Genome-Guided Analysis of Clostridium ultunense and Comparative Genomics Reveal Different Strategies for Acetate Oxidation and Energy Conservation in Syntrophic Acetate-Oxidising Bacteria. PMID:29690652
Genome sequence of Acuticoccus yangtzensis JL1095T (DSM 28604T) isolated from the Yangtze Estuary. PMID:29299111
Complete genome sequence of Jiangella gansuensis strain YIM 002T (DSM 44835T), the type species of the genus Jiangella and source of new antibiotic compounds. PMID:28174619
Fermentation of glycerol by Anaerobium acetethylicum and its potential use in biofuel production. PMID:28004884
Genomes OnLine Database (GOLD) v.6: data updates and feature enhancements. PMID:27794040
Genome sequence of Bradyrhizobium sp. WSM1253; a microsymbiont of Ornithopus compressus from the Greek Island of Sifnos. PMID:26629308
Working draft genome sequence of the mesophilic acetate oxidizing bacterium Syntrophaceticus schinkii strain Sp3. PMID:26566424
Draft genome sequence of a nitrate-reducing, o-phthalate degrading bacterium, Azoarcus sp. strain PA01(T). PMID:26516406
Draft genome sequence of Halomonas meridiana R1t3 isolated from the surface microbiota of the Caribbean Elkhorn coral Acropora palmata. PMID:26451236
Draft genome sequence of 'Treponema phagedenis' strain V1, isolated from bovine digital dermatitis. PMID:26392840
High-Quality draft genome sequence of the Lotus spp. microsymbiont Mesorhizobium loti strain CJ3Sym. PMID:26380641
Visualizing genome and systems biology: technologies, tools, implementation techniques and trends, past, present and future. PMID:26309733
Microalgae as sustainable renewable energy feedstock for biofuel production. PMID:25874216
Genome sequence of the Lotus spp. microsymbiont Mesorhizobium loti strain NZP2037. PMID:25780500
Genome sequence of the Lotus spp. microsymbiont Mesorhizobium loti strain R7A. PMID:25780499
Genome sequence of the dark pink pigmented Listia bainesii microsymbiont Methylobacterium sp. WSM2598. PMID:25780498
Genome sequence of Ensifer medicae Di28; an effective N2-fixing microsymbiont of Medicago murex and M. polymorpha. PMID:25780497
Genome sequence of the Lotus corniculatus microsymbiont Mesorhizobium loti strain R88B. PMID:25780496
Concordance and discordance of sequence survey methods for molecular epidemiology. PMID:25737810
Complete genome sequence of Pseudomonas fluorescens strain PICF7, an indigenous root endophyte from olive (Olea europaea L.) and effective biocontrol agent against Verticillium dahliae. PMID:25685259
The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification. PMID:25348402
Genome sequence of Microvirga lupini strain LUT6(T), a novel Lupinus alphaproteobacterial microsymbiont from Texas. PMID:25197490
Genome sequence of the Medicago-nodulating Ensifer meliloti commercial inoculant strain RRI128. PMID:25197447
Genome sequence of the acid-tolerant Burkholderia sp. strain WSM2232 from Karijini National Park, Australia. PMID:25197442
Genome sequence of the acid-tolerant Burkholderia sp. strain WSM2230 from Karijini National Park, Australia. PMID:25197440
Genome sequence of the Listia angolensis microsymbiont Microvirga lotononidis strain WSM3557(T.). PMID:25197439
Genome sequence of Rhizobium leguminosarum bv trifolii strain WSM1689, the microsymbiont of the one flowered clover Trifolium uniflorum. PMID:25197438
Genome sequence of Ensifer medicae strain WSM1115; an acid-tolerant Medicago-nodulating microsymbiont from Samothraki, Greece. PMID:25197437
Genome sequence of Burkholderia mimosarum strain LMG 23256(T), a Mimosa pigra microsymbiont from Anso, Taiwan. PMID:25197434
Genome sequence of Ensifer arboris strain LMG 14919(T); a microsymbiont of the legume Prosopis chilensis growing in Kosti, Sudan. PMID:25197433
Complete genome sequence of Mesorhizobium ciceri bv. biserrulae type strain (WSM1271(T)). PMID:25197432
Complete genome sequence of Granulicella tundricola type strain MP5ACTX9(T), an Acidobacteria from tundra soil. PMID:25197431
Genome sequence of Ensifer medicae strain WSM1369; an effective microsymbiont of the annual legume Medicago sphaerocarpos. PMID:24976897
Complete genome sequence of Mesorhizobium australicum type strain (WSM2073(T)). PMID:24976896
Genome sequence of the Lebeckia ambigua-nodulating "Burkholderia sprentiae" strain WSM5005(T.). PMID:24976894
Genome sequence of Ensifer meliloti strain WSM1022; a highly effective microsymbiont of the model legume Medicago truncatula A17. PMID:24976888
Genome sequence of Ensifer sp. TW10; a Tephrosia wallichii (Biyani) microsymbiont native to the Indian Thar Desert. PMID:24976887
Complete genome sequence of Mesorhizobium opportunistum type strain WSM2075(T.). PMID:24976886
Genome sequence of the Trifolium rueppellianum -nodulating Rhizobium leguminosarum bv. trifolii strain WSM2012. PMID:24976885
Genome sequence of the lupin-nodulating Bradyrhizobium sp. strain WSM1417. PMID:24976884
Genome sequence of the South American clover-nodulating Rhizobium leguminosarum bv. trifolii strain WSM597. PMID:24976883
Genome sequence of the Ornithopus/Lupinus-nodulating Bradyrhizobium sp. strain WSM471. PMID:24976882
Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain TA1. PMID:24976881
Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain SRDI943. PMID:24976880
Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain SRDI565. PMID:24976879
Complete genome sequence of Granulicella mallensis type strain MP5ACTX8(T), an acidobacterium from tundra soil. PMID:24501646
Complete genome sequence of Terriglobus saanensis type strain SP1PR4(T), an Acidobacteria from tundra soil. PMID:23450133
The Metadata Coverage Index (MCI): A standardized metric for quantifying database metadata richness. PMID:23409217
Non-contiguous finished genome sequence and description of Herbaspirillum massiliense sp. nov. PMID:23407294
The use of evolutionary patterns in protein annotation. PMID:22633559
One test microbial diagnostic microarray for identification of Mycoplasma mycoides subsp. mycoides and other Mycoplasma species. PMID:22271459
A chemically synthesized peptoid-based drag-tag enhances free-solution DNA sequencing by capillary electrophoresis. PMID:22180915
The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata. PMID:22135293
Heterologous expression and characterization of two 1-hydroxy-2-naphthoic acid dioxygenases from Arthrobacter phenanthrenivorans. PMID:22101055
Genome-based studies of marine microorganisms to maximize the diversity of natural products discovery for medical treatments. PMID:21826184
Genome assembly has a major impact on gene content: a comparison of annotation in two Bos taurus assemblies. PMID:21731731
Complete genome sequence of Marivirga tractuosa type strain (H-43). PMID:21677852
Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6). PMID:21677850
The proteomic complexity and rise of the primordial ancestor of diversified life. PMID:21612591
Complete genome sequence of Thermomonospora curvata type strain (B9). PMID:21475583
Complete genome sequence of Methanoplanus petrolearius type strain (SEBR 4847). PMID:21304750
Complete genome sequence of Sulfurimonas autotrophica type strain (OK10). PMID:21304749
Complete genome sequence of Vulcanisaeta distributa type strain (IC-017). PMID:21304741
Complete genome sequence of Marinobacter adhaerens type strain (HP15), a diatom-interacting marine microorganism. PMID:21304739
Complete genome sequence of Thermaerobacter marianensis type strain (7p75a). PMID:21304738
Complete genome sequence of Nocardiopsis dassonvillei type strain (IMRU 509). PMID:21304737
Complete genome sequence of Methanothermus fervidus type strain (V24S). PMID:21304736
Complete genome sequence of Ilyobacter polytropus type strain (CuHbu1). PMID:21304735
Non-contiguous finished genome sequence of Aminomonas paucivorans type strain (GLU-3). PMID:21304733
Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1). PMID:21304731
Meeting Report: "Metagenomics, Metadata and Meta-analysis" (M3) Workshop at the Pacific Symposium on Biocomputing 2010. PMID:21304719
Complete genome sequence of Rhizobium leguminosarum bv. trifolii strain WSM1325, an effective microsymbiont of annual Mediterranean clovers. PMID:21304718
Meeting Report from the Genomic Standards Consortium (GSC) Workshop 8. PMID:21304696
Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison. PMID:21304684
Complete genome sequence of the Medicago microsymbiont Ensifer (Sinorhizobium) medicae strain WSM419. PMID:21304680
Complete genome sequence of Rhizobium leguminosarum bv trifolii strain WSM2304, an effective microsymbiont of the South American clover Trifolium polymorphum. PMID:21304679
Complete genome sequence of Veillonella parvula type strain (Te3). PMID:21304678
Complete genome sequence of Sphaerobacter thermophilus type strain (S 6022). PMID:21304677
Complete genome sequence of Desulfohalobium retbaense type strain (HR(100)). PMID:21304676
Complete genome sequence of Streptosporangium roseum type strain (NI 9100). PMID:21304675
Complete genome sequence of Gordonia bronchialis type strain (3410). PMID:21304674
Complete genome sequence of Alicyclobacillus acidocaldarius type strain (104-IA). PMID:21304673
Complete genome sequence of Xylanimonas cellulosilytica type strain (XIL07). PMID:21304672
Complete genome sequence of Pirellula staleyi type strain (ATCC 27377). PMID:21304671
Complete genome sequence of Streptobacillus moniliformis type strain (9901). PMID:21304670
Complete genome sequence of Rhodothermus marinus type strain (R-10). PMID:21304669
Meeting Report: "Metagenomics, Metadata and Meta-analysis" (M3) Special Interest Group at ISMB 2009. PMID:21304668
Complete genome sequence of Halomicrobium mukohataei type strain (arg-2). PMID:21304667
Complete genome sequence of Jonesia denitrificans type strain (Prevot 55134). PMID:21304666
Complete genome sequence of Thermanaerovibrio acidaminovorans type strain (Su883). PMID:21304665
Complete genome sequence of Desulfotomaculum acetoxidans type strain (5575). PMID:21304664
Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1). PMID:21304663
Complete genome sequence of Stackebrandtia nassauensis type strain (LLR-40K-21). PMID:21304662
Complete genome sequence of Kangiella koreensis type strain (SW-125). PMID:21304661
Complete genome sequence of Halorhabdus utahensis type strain (AX-2). PMID:21304660
Standards and standard-compliance. PMID:21304659
Complete genome sequence of Methanocorpusculum labreanum type strain Z. PMID:21304657
Complete genome sequence of Methanoculleus marisnigri Romesser et al. 1981 type strain JR1. PMID:21304656
Complete genome sequence of Staphylothermus marinus Stetter and Fiala 1986 type strain F1. PMID:21304655
Complete genome sequence of Eggerthella lenta type strain (IPP VPI 0255). PMID:21304654
Complete genome sequence of Atopobium parvulum type strain (IPP 1246). PMID:21304653
Complete genome sequence of Anaerococcus prevotii type strain (PC1). PMID:21304652
Complete genome sequence of Halogeometricum borinquense type strain (PR3). PMID:21304651
Complete genome sequence of Saccharomonospora viridis type strain (P101). PMID:21304650
Complete genome sequence of Dyadobacter fermentans type strain (NS114). PMID:21304649
Complete genome sequence of Leptotrichia buccalis type strain (C-1013-b). PMID:21304648
Complete genome sequence of Catenulispora acidiphila type strain (ID 139908). PMID:21304647
Complete genome sequence of Sanguibacter keddieii type strain (ST-74). PMID:21304646
Complete genome sequence of Capnocytophaga ochracea type strain (VPI 2845). PMID:21304645
Complete genome sequence of Cryptobacterium curtum type strain (12-3). PMID:21304644
Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3). PMID:21304637
Complete genome sequence of Actinosynnema mirum type strain (101). PMID:21304636
Complete genome sequence of Acidimicrobium ferrooxidans type strain (ICP). PMID:21304635
Complete genome sequence of Desulfomicrobium baculatum type strain (X). PMID:21304634
Complete genome sequence of Beutenbergia cavernae type strain (HKI 0122). PMID:21304633
Complete genome sequence of Kytococcus sedentarius type strain (541). PMID:21304632
Complete genome sequence of Brachybacterium faecium type strain (Schefferle 6-10). PMID:21304631
Interplay of metagenomics and in vitro compartmentalization. PMID:21261880
Genomics of biological wastewater treatment. PMID:21261852
Unpublished but public microbial genomes with biotechnological relevance. PMID:21261839
How to make a minimal genome for synthetic minimal cell. PMID:21203957
Cholera- and anthrax-like toxins are among several new ADP-ribosyltransferases. PMID:21170356
Predicting DNA-binding specificities of eukaryotic transcription factors. PMID:21152420
Murasaki: a fast, parallelizable algorithm to find anchors from multiple genomes. PMID:20885980
Species concepts in Calonectria (Cylindrocladium). PMID:20806003
A phylogenetic survey of myotubularin genes of eukaryotes: distribution, protein structure, evolution, and gene expression. PMID:20576132
Understanding the evolutionary relationships and major traits of Bacillus through comparative genomics. PMID:20504335
Metagenomic sequencing of an in vitro-simulated microbial community. PMID:20419134
Nursing our microbiota: molecular linkages between bifidobacteria and milk oligosaccharides. PMID:20409714
The next generation becomes the now generation. PMID:20386747
The complete multipartite genome sequence of Cupriavidus necator JMP134, a versatile pollutant degrader. PMID:20339589
Evolutionary history and stress regulation of the lectin superfamily in higher plants. PMID:20236552
Exact distribution of a pattern in a set of random sequences generated by a Markov source: applications to biological data. PMID:20205909
Ribosomal RNA diversity predicts genome diversity in gut bacteria and their relatives. PMID:20197316
Genetic engineering of algae for enhanced biofuel production. PMID:20139239
Interaction fidelity in two-component signaling. PMID:20133181
FUNGIpath: a tool to assess fungal metabolic pathways predicted by orthology. PMID:20122162
Integrating prokaryotes and eukaryotes: DNA transposases in light of structure. PMID:20067338
Linear plasmid vector for cloning of repetitive or unstable sequences in Escherichia coli. PMID:20040575
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea. PMID:20033048
'Unknown' proteins and 'orphan' enzymes: the missing half of the engineering parts list--and how to find it. PMID:20001958
Gene context analysis in the Integrated Microbial Genomes (IMG) data management system. PMID:19956731
Genome sequence of the Fleming strain of Micrococcus luteus, a simple free-living actinobacterium. PMID:19948807
The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata. PMID:19914934
MBGD update 2010: toward a comprehensive resource for exploring microbial genome diversity. PMID:19906735
The integrated microbial genomes system: an expanding comparative analysis resource. PMID:19864254
Megx.net: integrated database resource for marine ecological genomics. PMID:19858098
Computational resources in infectious disease: limitations and challenges. PMID:19855825
Genomics. Genome project standards in a new era of sequencing. PMID:19815760
The fungi. PMID:19788875
Vaccinology in the genome era. PMID:19729849
Structural analysis of polarizing indels: an emerging consensus on the root of the tree of life. PMID:19706177
Comparative genomic analysis uncovers 3 novel loci encoding type six secretion systems differentially distributed in Salmonella serotypes. PMID:19653904
Horizontal gene transfer of zinc and non-zinc forms of bacterial ribosomal protein S4. PMID:19640295
Fifteen years of microbial genomics: meeting the challenges and fulfilling the dream. PMID:19587669
The DAWGPAWS pipeline for the annotation of genes and transposable elements in plant genomes. PMID:19545381
Carboxylic ester hydrolases from hyperthermophiles. PMID:19544040
Expansion mechanisms and functional annotations of hypothetical genes in the rice genome. PMID:19535473
Functional equivalency inferred from "authoritative sources" in networks of homologous proteins. PMID:19521530
New opportunities to fight against infectious diseases and to identify pertinent drug targets with novel methodologies. PMID:19519478
WebGMAP: a web service for mapping and aligning cDNA sequences to genomes. PMID:19465381
The Microbe browser for comparative genomics. PMID:19406928
Microbial co-habitation and lateral gene transfer: what transposases can tell us. PMID:19393086
Functional classification of genome-scale metabolic networks. PMID:19300528
Laboratory procedures to generate viral metagenomes. PMID:19300441
Engineering transcription factors with novel DNA-binding specificity using comparative genomics. PMID:19264798
Integration of phenotypic metadata and protein similarity in Archaea using a spectral bipartitioning approach. PMID:19223325
Darwinian evolution in the light of genomics. PMID:19213802
Tuberculosis drug resistance mutation database. PMID:19209951
TransCent: computational enzyme design by transferring active sites and considering constraints relevant for catalysis. PMID:19208235
Genome analysis of the anaerobic thermohalophilic bacterium Halothermothrix orenii. PMID:19145256
Identification of direct residue contacts in protein-protein interaction by message passing. PMID:19116270
Barcodes for genomes and applications. PMID:19091119
Stabilizing synthetic data in the DNA of living organisms. PMID:19083123
The genome sequence of Bifidobacterium longum subsp. infantis reveals adaptations for milk utilization within the infant microbiome. PMID:19033196
Genome and proteome annotation: organization, interpretation and integration. PMID:19019817
Trends in prokaryotic evolution revealed by comparison of closely related bacterial and archaeal genomes. PMID:18978059
It is computation time for bacteriology! PMID:18978045
Multiple genome alignment for identifying the core structure among moderately related microbial genomes. PMID:18976470
Ortho-proteogenomics: multiple proteomes investigation through orthology and a new MS-based protocol. PMID:18955433
PeroxiBase: a database with new tools for peroxidase family classification. PMID:18948296
PEDANT covers all complete RefSeq genomes. PMID:18940859
The Protein Feature Ontology: a tool for the unification of protein feature annotations. PMID:18936051
Strepto-DB, a database for comparative genomics of group A (GAS) and B (GBS) streptococci, implemented with the novel database platform 'Open Genome Resource' (OGeR). PMID:18854354
Discovering functional novelty in metagenomes: examples from light-mediated processes. PMID:18849420
ATGC: a database of orthologous genes from closely related prokaryotic genomes and a research platform for microevolution of prokaryotes. PMID:18845571
Methods and tools for comparative genomics of foodborne pathogens. PMID:18713064
Basal DNA repair machinery is subject to positive selection in ionizing-radiation-resistant bacteria. PMID:18570673
The minimum information about a genome sequence (MIGS) specification. PMID:18464787
Comparative genomics-based investigation of resequencing targets in Vibrio fischeri: focus on point miscalls and artefactual expansions. PMID:18366731
Genomes OnLine Database (GOLD): a monitor of genome projects world-wide PubMed citations: 89.

89 articles citing: Genomes OnLine Database (GOLD): a monitor of genome projects world-wide

Geochemically Defined Space-for-Time Transects Successfully Capture Microbial Dynamics Along Lacustrine Chronosequences in a Polar Desert. PMID:35173689
Kefir metabolites in a fly model for Alzheimer's disease. PMID:34045626
Understanding the Response of Nitrifying Communities to Disturbance in the McMurdo Dry Valleys, Antarctica. PMID:32183078
Genomes OnLine database (GOLD) v.7: updates and new features. PMID:30357420
PlantRNA_Sniffer: A SVM-Based Workflow to Predict Long Intergenic Non-Coding RNAs in Plants. PMID:29657283
Physiological and Metagenomic Characterizations of the Synergistic Relationships between Ammonia- and Nitrite-Oxidizing Bacteria in Freshwater Nitrification. PMID:29535685
A plant pathology perspective of fungal genome sequencing. PMID:28824836
Genomes OnLine Database (GOLD) v.6: data updates and feature enhancements. PMID:27794040
Diuron tolerance and potential degradation by pelagic microbiomes in the Great Barrier Reef lagoon. PMID:26989611
Marine microbial communities of the Great Barrier Reef lagoon are influenced by riverine floodwaters and seasonal weather events. PMID:26839738
Novel monoclonal antibodies against Plasmodium falciparum histidine-rich protein 2: development and application in rapid diagnostic tests of malaria in hyperendemic regions of China and Myanmar. PMID:25962879
Alkane hydroxylase genes in psychrophile genomes and the potential for cold active catalysis. PMID:25515036
The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification. PMID:25348402
Emerging strategies and integrated systems microbiology technologies for biodiscovery of marine bioactive compounds. PMID:24918453
Plant-bacteria association and symbiosis: are there common genomic traits in alphaproteobacteria? PMID:24710303
Relative amino acid composition signatures of organisms and environments. PMID:24204807
ExtremeDB: a unified web repository of extremophilic archaea and bacteria. PMID:23696792
Chlorophyll biosynthesis gene evolution indicates photosystem gene duplication, not photosystem merger, at the origin of oxygenic photosynthesis. PMID:23258841
Current opportunities and challenges in microbial metagenome analysis--a bioinformatic perspective. PMID:22966151
REMiner-II: a tool for rapid identification and configuration of repetitive element arrays from large mammalian chromosomes as a single query. PMID:22750555
Analyzing large biological datasets with association networks. PMID:22638576
Metabolic classification of microbial genomes using functional probes. PMID:22537274
Unique profile of ordered arrangements of repetitive elements in the C57BL/6J mouse genome implicating their functional roles. PMID:22529984
Bacterial genomes: habitat specificity and uncharted organisms. PMID:22395783
The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata. PMID:22135293
Application of NMR and molecular docking in structure-based drug discovery. PMID:21915777
REMiner: a tool for unbiased mining and analysis of repetitive elements and their arrangement structures of large chromosomes. PMID:21803149
Bioinformatic evidence for a widely distributed, ribosomally produced electron carrier precursor, its maturation proteins, and its nicotinoprotein redox partners. PMID:21223593
Proteogenomic analysis of polymorphisms and gene annotation divergences in prokaryotes using a clustered mass spectrometry-friendly database. PMID:21030493
Database of exact tandem repeats in the Zebrafish genome. PMID:20515480
Comparative analysis of sequence periodicity among prokaryotic genomes points to differences in nucleoid structure and a relationship to gene expression. PMID:20494989
Advances in Nuclear Magnetic Resonance for Drug Discovery. PMID:20333269
Comparative analysis of missing value imputation methods to improve clustering and interpretation of microarray experiments. PMID:20056002
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea. PMID:20033048
The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata. PMID:19914934
The conservation and evolutionary modularity of metabolism. PMID:19523219
Methods for comparative metagenomics. PMID:19208111
Reconstruction of biochemical networks in microorganisms. PMID:19116616
Model-based probe set optimization for high-performance microarrays. PMID:19103659
MetaSim: a sequencing simulator for genomics and metagenomics. PMID:18841204
Mapping functional associations in the entire genome of Drosophila melanogaster using fusion analysis. PMID:18629289
Detecting the molecular scars of evolution in the Mycobacterium tuberculosis complex by analyzing interrupted coding sequences. PMID:18325090
The application of FAST-NMR for the identification of novel drug discovery targets. PMID:18275915
Purification, crystallization and preliminary crystallographic analysis of the non-Pfam protein AF1514 from Archeoglobus fulgidus DSM 4304. PMID:18259057
The global landscape of sequence diversity. PMID:17996061
The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata. PMID:17981842
Blast sampling for structural and functional analyses. PMID:17319945
Interrupted coding sequences in Mycobacterium smegmatis: authentic mutations or sequencing errors? PMID:17295914
Triticeae genomics: advances in sequence analysis of large genome cereal crops. PMID:17295124
Evolution of transmembrane protein kinases implicated in coordinating remodeling of gram-positive peptidoglycan: inside versus outside. PMID:16936012
A novel data mining method to identify assay-specific signatures in functional genomic studies. PMID:16907975
VIRGO: computational prediction of gene functions. PMID:16845022
Genome increase as a clock for the origin and evolution of life. PMID:16768805
Iterative reconstruction of transcriptional regulatory networks: an algorithmic approach. PMID:16710450
Crystal structure of hypothetical protein TTHB192 from Thermus thermophilus HB8 reveals a new protein family with an RNA recognition motif-like domain. PMID:16672237
A comprehensive software suite for the analysis of cDNAs. PMID:16487083
The current status of natural products from marine fungi and their potential as anti-infective agents. PMID:16429315
TreeFam: a curated database of phylogenetic trees of animal gene families. PMID:16381935
INVHOGEN: a database of homologous invertebrate genes. PMID:16381884
The integrated microbial genomes (IMG) system. PMID:16381883
The Genomes On Line Database (GOLD) v.2: a monitor of genome projects worldwide. PMID:16381880
Computational identification of strain-, species- and genus-specific proteins. PMID:16305751
An expression-driven approach to the prediction of carbohydrate transport and utilization regulons in the hyperthermophilic bacterium Thermotoga maritima. PMID:16237010
Comparative analyses of fundamental differences in membrane transport capabilities in prokaryotes and eukaryotes. PMID:16118665
MPrime: efficient large scale multiple primer and oligonucleotide design for customized gene microarrays. PMID:16014168
BRIGEP--the BRIDGE-based genome-transcriptome-proteome browser. PMID:15980569
DNA microarrays--techniques and applications in microbial systems. PMID:15881400
Genome coverage, literally speaking. The challenge of annotating 200 genomes with 4 million publications. PMID:15864286
The PECACE domain: a new family of enzymes with potential peptidoglycan cleavage activity in Gram-positive bacteria. PMID:15717932
BacMap: an interactive picture atlas of annotated bacterial genomes. PMID:15608206
PartiGeneDB--collating partial genomes. PMID:15608203
GenomeViz: visualizing microbial genomes. PMID:15601465
'Conserved hypothetical' proteins: prioritization of targets for experimental study. PMID:15479782
Comparative genomics: methods and applications. PMID:15278216
Genome-wide identification of genes likely to be involved in human genetic disease. PMID:15181176
Visualizing sequence similarity of protein families. PMID:15140831
Progress towards mapping the universe of protein folds. PMID:15128436
GeneOrder3.0: software for comparing the order of genes in pairs of small bacterial genomes. PMID:15128433
FELINES: a utility for extracting and examining EST-defined introns and exons. PMID:14602934
GeneViTo: visualizing gene-product functional and structural features in genomic datasets. PMID:14594459
The balance of driving forces during genome evolution in prokaryotes. PMID:12840037
Lateral gene transfer (LGT) between Archaea and Escherichia coli is a contributor to the emergence of novel infectious disease. PMID:12816550
Beyond 100 genomes. PMID:12734008
The ERGO genome analysis and discovery system. PMID:12519973
Whole-genome comparative analysis of three phytopathogenic Xylella fastidiosa strains. PMID:12205291
From genetic footprinting to antimicrobial drug targets: examples in cofactor biosynthetic pathways. PMID:12142426
The effects of multilocus balancing selection on neutral variability. PMID:12072479
An efficient algorithm for large-scale detection of protein families. PMID:11917018
RNA expression analysis using an antisense Bacillus subtilis genome array. PMID:11717296
Genomes OnLine database (GOLD) v.7: updates and new features PubMed citations: 83.

83 articles citing: Genomes OnLine database (GOLD) v.7: updates and new features

Genome-scale metabolic network model of Eriocheir sinensis icrab4665 and nutritional requirement analysis. PMID:35764922
Thousands of small, novel genes predicted in global phage genomes. PMID:35732113
merlin, an improved framework for the reconstruction of high-quality genome-scale metabolic models. PMID:35694833
MIAOME: Human microbiome affect the host epigenome. PMID:35664224
Sodalis ligni Strain 159R Isolated from an Anaerobic Lignin-Degrading Consortium. PMID:35579457
Genomic insights into the diversity of non-coding RNAs in Bacillus cereus sensu lato. PMID:35552506
Metagenome-assembled genomes of phytoplankton microbiomes from the Arctic and Atlantic Oceans. PMID:35484634
Human gut bacteria produce ΤΗ17-modulating bile acid metabolites. PMID:35296854
EnsembleFam: towards more accurate protein family prediction in the twilight zone. PMID:35287576
Experimental evaluation of ecological principles to understand and modulate the outcome of bacterial strain competition in gut microbiomes. PMID:35210551
SeqWho: Reliable, Rapid Determination of Sequence File Identity using k-mer Frequencies in Random Forest Classifiers. PMID:35134110
Ontology-Enriched Specifications Enabling Findable, Accessible, Interoperable, and Reusable Marine Metagenomic Datasets in Cyberinfrastructure Systems. PMID:34956127
Comparative Genomics Reveals Insights into Induction of Violacein Biosynthesis and Adaptive Evolution in Janthinobacterium. PMID:34908429
Water and soil contaminated by arsenic: the use of microorganisms and plants in bioremediation. PMID:34859349
Protective role of the Arabidopsis leaf microbiota against a bacterial pathogen. PMID:34819644
Deep (Meta)genomics and (Meta)transcriptome Analyses of Fungal and Bacteria Consortia From Aircraft Tanks and Kerosene Identify Key Genes in Fuel and Tank Corrosion. PMID:34675897
SalmoSim: the development of a three-compartment in vitro simulator of the Atlantic salmon GI tract and associated microbial communities. PMID:34465363
Prognosis of recurrent bacterial vaginosis based on longitudinal changes in abundance of Lactobacillus and specific species of Gardnerella. PMID:34424942
Identification of a pathway for electron uptake in Shewanella oneidensis. PMID:34381156
New Perspectives on Avian Models for Studies of Basic Aging Processes. PMID:34200297
Genomic Analysis of Family UBA6911 (Group 18 Acidobacteria) Expands the Metabolic Capacities of the Phylum and Highlights Adaptations to Terrestrial Habitats. PMID:34160232
Acinetobacter baylyi regulates type IV pilus synthesis by employing two extension motors and a motor protein inhibitor. PMID:34145281
Functional prediction of environmental variables using metabolic networks. PMID:34108539
Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery. PMID:34050176
Ecology and molecular targets of hypermutation in the global microbiome. PMID:34031405
Genomic Analysis of the Yet-Uncultured Binatota Reveals Broad Methylotrophic, Alkane-Degradation, and Pigment Production Capacities. PMID:34006650
Individuals at risk for rheumatoid arthritis harbor differential intestinal bacteriophage communities with distinct metabolic potential. PMID:33957082
Shotgun metagenomic analysis of microbial communities from the Loxahatchee nature preserve in the Florida Everglades. PMID:33902723
Ten Years of Collaborative Progress in the Quest for Orthologs. PMID:33822172
Plant NLR diversity: the known unknowns of pan-NLRomes. PMID:33793812
Oxidation of trimethylamine to trimethylamine N-oxide facilitates high hydrostatic pressure tolerance in a generalist bacterial lineage. PMID:33771875
Hybrid genome de novo assembly with methylome analysis of the anaerobic thermophilic subsurface bacterium Thermanaerosceptrum fracticalcis strain DRI-13T. PMID:33757423
A Primer and Guidelines for Shotgun Proteomic Analysis in Non-model Organisms. PMID:33687710
Distribution and preservation of the components of the engulfment. What is beyond representative genomes? PMID:33651833
Using neural networks to mine text and predict metabolic traits for thousands of microbes. PMID:33651810
Depth-discrete metagenomics reveals the roles of microbes in biogeochemical cycling in the tropical freshwater Lake Tanganyika. PMID:33564113
Refactoring biosynthetic gene clusters for heterologous production of microbial natural products. PMID:33476936
Universal and taxon-specific trends in protein sequences as a function of age. PMID:33416492
Mutations Affecting HVO_1357 or HVO_2248 Cause Hypermotility in Haloferax volcanii, Suggesting Roles in Motility Regulation. PMID:33396553
Environmental Consortium Containing Pseudomonas and Bacillus Species Synergistically Degrades Polyethylene Terephthalate Plastic. PMID:33361127
CheckV assesses the quality and completeness of metagenome-assembled viral genomes. PMID:33349699
Optofluidic Raman-activated cell sorting for targeted genome retrieval or cultivation of microbial cells with specific functions. PMID:33311714
HumanMetagenomeDB: a public repository of curated and standardized metadata for human metagenomes. PMID:33221926
CRISPR sequences are sometimes erroneously translated and can contaminate public databases with spurious proteins containing spaced repeats. PMID:33206958
A genomic catalog of Earth's microbiomes. PMID:33169036
Avian phenotypic convergence is subject to low genetic constraints based on genomic evidence. PMID:33160317
The Ecology and Evolution of Amoeba-Bacterium Interactions. PMID:33158887
Genomes OnLine Database (GOLD) v.8: overview and updates. PMID:33152092
IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses. PMID:33137183
BIOCOM-PIPE: a new user-friendly metabarcoding pipeline for the characterization of microbial diversity from 16S, 18S and 23S rRNA gene amplicons. PMID:33129268
Metagenomes and Metatranscriptomes of a Glucose-Amended Agricultural Soil. PMID:33122409
The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities. PMID:33119741
Human trans-editing enzyme displays tRNA acceptor-stem specificity and relaxed amino acid selectivity. PMID:33051185
Metagenomes from Experimental Hydrologic Manipulation of Restored Coastal Plain Wetland Soils (Tyrell County, North Carolina). PMID:33033130
High-quality draft genome sequences of Pseudomonas monteilii DSM 14164T, Pseudomonas mosselii DSM 17497T, Pseudomonas plecoglossicida DSM 15088T, Pseudomonas taiwanensis DSM 21245T and Pseudomonas vranovensis DSM 16006T: taxonomic considerations. PMID:32974501
Biofilm matrix disrupts nematode motility and predatory behavior. PMID:32958848
Microbial single-cell omics: the crux of the matter. PMID:32845367
Comparative genomic analysis of Flavobacteriaceae: insights into carbohydrate metabolism, gliding motility and secondary metabolite biosynthesis. PMID:32819293
Targeted Cell Sorting Combined With Single Cell Genomics Captures Low Abundant Microbial Dark Matter With Higher Sensitivity Than Metagenomics. PMID:32793124
Unravelling the diversity of magnetotactic bacteria through analysis of open genomic databases. PMID:32737307
A unified catalog of 204,938 reference genomes from the human gut microbiome. PMID:32690973
Benchmarking gene ontology function predictions using negative annotations. PMID:32657372
COVID-19 pandemic reveals the peril of ignoring metadata standards. PMID:32561801
A synthesis of bacterial and archaeal phenotypic trait data. PMID:32503990
A pipeline for targeted metagenomics of environmental bacteria. PMID:32061258
General and Genomic DNA-Binding Specificity for the Thermus thermophilus HB8 Transcription Factor TTHB023. PMID:31935968
Harvesting of Prebiotic Fructooligosaccharides by Nonbeneficial Human Gut Bacteria. PMID:31915220
Conserved genomic neighborhood is a strong but no perfect indicator for a direct interaction of microbial gene products. PMID:31900122
Changes to the gut microbiota induced by losartan contributes to its antihypertensive effects. PMID:31883108
Targeting Bacterial Genomes for Natural Product Discovery. PMID:31822352
MGnify: the microbiome analysis resource in 2020. PMID:31696235
IMG-ABC v.5.0: an update to the IMG/Atlas of Biosynthetic Gene Clusters Knowledgebase. PMID:31665416
Current Status and Potential Applications of Underexplored Prokaryotes. PMID:31635256
BiomeNet: a database for construction and analysis of functional interaction networks for any species with a sequenced genome. PMID:31599923
Challenges in the construction of knowledge bases for human microbiome-disease associations. PMID:31488215
Data on microbial community composition of sludge from high altitude wastewater treatment plants determined by 16S rRNA gene sequencing. PMID:31372405
Identification and Characterization of Preferred DNA-Binding Sites for the Thermus thermophilus HB8 Transcriptional Regulator TTHA0973. PMID:31284644
RedoxiBase: A database for ROS homeostasis regulated proteins. PMID:31228650
Towards creating an extended metabolic model (EMM) for E. coli using enzyme promiscuity prediction and metabolomics data. PMID:31196115
Advancing Genome-Resolved Metagenomics beyond the Shotgun. PMID:31120027
Marine Natural Products from Microalgae: An -Omics Overview. PMID:31067655
Trait-based community assembly and succession of the infant gut microbiome. PMID:30710083
The 26th annual Nucleic Acids Research database issue and Molecular Biology Database Collection. PMID:30626175
Genomes OnLine Database (GOLD) v.8: overview and updates PubMed citations: 35.

35 articles citing: Genomes OnLine Database (GOLD) v.8: overview and updates

Early Evolutionary Selection of NAD Biosynthesis Pathway in Bacteria. PMID:35888693
Ecosystem-specific microbiota and microbiome databases in the era of big data. PMID:35842686
An Unprecedented Number of Cytochrome P450s Are Involved in Secondary Metabolism in Salinispora Species. PMID:35630316
Novel Viral DNA Polymerases From Metagenomes Suggest Genomic Sources of Strand-Displacing Biochemical Phenotypes. PMID:35531281
Multi-CSAR: a web server for scaffolding contigs using multiple reference genomes. PMID:35524553
The Genome of the Acid Soil-Adapted Strain Rhizobium favelukesii OR191 Encodes Determinants for Effective Symbiotic Interaction With Both an Inverted Repeat Lacking Clade and a Phaseoloid Legume Host. PMID:35495676
Ontology-aware deep learning enables ultrafast and interpretable source tracking among sub-million microbial community samples from hundreds of niches. PMID:35473941
Amplicon Sequencing of Single-Copy Protein-Coding Genes Reveals Accurate Diversity for Sequence-Discrete Microbiome Populations. PMID:35416715
Active lithoautotrophic and methane-oxidizing microbial community in an anoxic, sub-zero, and hypersaline High Arctic spring. PMID:35396347
Assessment of global health risk of antibiotic resistance genes. PMID:35322038
Scaling laws in enzyme function reveal a new kind of biochemical universality. PMID:35217602
PREGO: A Literature and Data-Mining Resource to Associate Microorganisms, Biological Processes, and Environment Types. PMID:35208748
Similarities in Virulence and Extended Spectrum Beta-Lactamase Gene Profiles among Cefotaxime-Resistant Escherichia coli Wastewater and Clinical Isolates. PMID:35203862
Gut microbiota composition is associated with SARS-CoV-2 vaccine immunogenicity and adverse events. PMID:35140064
Petabase-scale sequence alignment catalyses viral discovery. PMID:35082445
Using metagenomic data to boost protein structure prediction and discovery. PMID:35070166
The Bacteroidetes Aequorivita sp. and Kaistella jeonii Produce Promiscuous Esterases With PET-Hydrolyzing Activity. PMID:35069509
Apropos Data Sharing: Abandon the Distrust and Embrace the Opportunity. PMID:34941450
Contrasting Community Assembly Forces Drive Microbial Structural and Potential Functional Responses to Precipitation in an Incipient Soil System. PMID:34887842
Into a dilemma of plants: the antagonism between chemical defenses and growth. PMID:34843032
Comparative Genomics Analysis of Repetitive Elements in Ten Gymnosperm Species: "Dark Repeatome" and Its Abundance in Conifer and Gnetum Species. PMID:34833110
Persistence and plasticity in bacterial gene regulation. PMID:34824476
Diversity, taxonomy, and evolution of archaeal viruses of the class Caudoviricetes. PMID:34752450
Assessing the Biodegradation of Vulcanised Rubber Particles by Fungi Using Genetic, Molecular and Surface Analysis. PMID:34733834
Salvaging high-quality genomes of microbial species from a meromictic lake using a hybrid sequencing approach. PMID:34426638
DeepGRP: engineering a software tool for predicting genomic repetitive elements using Recurrent Neural Networks with attention. PMID:34425870
SorGSD: updating and expanding the sorghum genome science database with new contents and tools. PMID:34344425
An Ecological Basis for Dual Genetic Code Expansion in Marine Deltaproteobacteria. PMID:34335502
Developing Bioprospecting Strategies for Bioplastics Through the Large-Scale Mining of Microbial Genomes. PMID:34322108
How Do Shipworms Eat Wood? Screening Shipworm Gill Symbiont Genomes for Lignin-Modifying Enzymes. PMID:34322098
Metagenomics: a path to understanding the gut microbiome. PMID:34259891
Genomics, Exometabolomics, and Metabolic Probing Reveal Conserved Proteolytic Metabolism of Thermoflexus hugenholtzii and Three Candidate Species From China and Japan. PMID:34017316
DOE JGI Metagenome Workflow. PMID:34006627
High Potential for Biomass-Degrading Enzymes Revealed by Hot Spring Metagenomics. PMID:33968004
Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative's Workshop and Follow-On Activities. PMID:33622857

Genomes OnLine Database (GOLD 1.0): a monitor of complete and ongoing genome projects world-wide PubMed citations: 31.

http://dx.doi.org/10.1093/nar/gkaa983

Tags:

Tags
More detailed information about this field from each metasource.

biological sample
metasource: Fairsharing.org
version: FAIRsharing.org: GOLD; Genomes OnLine Database; DOI: https://doi.org/10.25504/FAIRsharing.5q1p14; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

genome map
metasource: Fairsharing.org
version: FAIRsharing.org: GOLD; Genomes OnLine Database; DOI: https://doi.org/10.25504/FAIRsharing.5q1p14; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

phenotype
metasource: Fairsharing.org
version: FAIRsharing.org: GOLD; Genomes OnLine Database; DOI: https://doi.org/10.25504/FAIRsharing.5q1p14; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

protocol
metasource: Fairsharing.org
version: FAIRsharing.org: GOLD; Genomes OnLine Database; DOI: https://doi.org/10.25504/FAIRsharing.5q1p14; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

study design
metasource: Fairsharing.org
version: FAIRsharing.org: GOLD; Genomes OnLine Database; DOI: https://doi.org/10.25504/FAIRsharing.5q1p14; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

taxonomic classification
metasource: Fairsharing.org
version: FAIRsharing.org: GOLD; Genomes OnLine Database; DOI: https://doi.org/10.25504/FAIRsharing.5q1p14; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

region
metasource: Fairsharing.org
version: FAIRsharing.org: GOLD; Genomes OnLine Database; DOI: https://doi.org/10.25504/FAIRsharing.5q1p14; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

genomics databases (non-vertebrate)
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

general genomics databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

archaea
metasource: re3data.org
version: re3data.org: Genomes OnLine Database; editing status 2019-01-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R39310 last accessed: 2022-11-04

bacteria
metasource: re3data.org
version: re3data.org: Genomes OnLine Database; editing status 2019-01-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R39310 last accessed: 2022-11-04

biogeography
metasource: re3data.org
version: re3data.org: Genomes OnLine Database; editing status 2019-01-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R39310 last accessed: 2022-11-04

eukaryota
metasource: re3data.org
version: re3data.org: Genomes OnLine Database; editing status 2019-01-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R39310 last accessed: 2022-11-04

genetics
metasource: re3data.org
version: re3data.org: Genomes OnLine Database; editing status 2019-01-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R39310 last accessed: 2022-11-04

genomics
metasource: re3data.org
version: re3data.org: Genomes OnLine Database; editing status 2019-01-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R39310 last accessed: 2022-11-04

metagenome
metasource: re3data.org
version: re3data.org: Genomes OnLine Database; editing status 2019-01-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R39310 last accessed: 2022-11-04

sequenzing
metasource: re3data.org
version: re3data.org: Genomes OnLine Database; editing status 2019-01-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R39310 last accessed: 2022-11-04

metagenomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:33.975185

sample collections
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:33.975185

metatranscriptomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:33.975185

whole genome sequencing
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:33.975185

metagenomic sequencing
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:33.975185

biological sample genome map phenotype protocol study design taxonomic classification region genomics general genomics archaea bacteria biogeography eukaryota genetics genomics metagenome sequenzing metagenomics sample collections metatranscriptomics whole genome sequencing metagenomic sequencing

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Integrated Microbial Genomes And Microbiomes

JGI Genome Portal

GOLD.db - Genomics Of Lipid-associated Disorders

Genome Project Database

IMG Genomes

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MycoCosm

Phytozome

Death Registration data for CPRD GOLD

Joint Genome Institute Data Portal

Cancer registration data for CPRD GOLD

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HES Diagnostic Imaging Dataset for CPRD GOLD

Nematodes.org

The International Genome Sample Resource

Practice postcode linked deprivation measures for CPRD GOLD