HumanCyc
Names
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HumanCyc
metasource: Fairsharing.org
version: FAIRsharing.org: HumanCyc; HumanCyc; DOI: https://doi.org/10.25504/FAIRsharing.zaa7w; Last edited: Oct. 22, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: re3data.org
version: re3data.org: HumanCyc; editing status 2021-04-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3ZS72 last accessed: 2022-11-04
Encyclopedia of Human Genes and Metabolism
metasource: re3data.org
version: re3data.org: HumanCyc; editing status 2021-04-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3ZS72 last accessed: 2022-11-04
Names
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HumanCyc
metasource: Fairsharing.orgversion: FAIRsharing.org: HumanCyc; HumanCyc; DOI: https://doi.org/10.25504/FAIRsharing.zaa7w; Last edited: Oct. 22, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: re3data.org
version: re3data.org: HumanCyc; editing status 2021-04-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3ZS72 last accessed: 2022-11-04
Encyclopedia of Human Genes and Metabolism
metasource: re3data.orgversion: re3data.org: HumanCyc; editing status 2021-04-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3ZS72 last accessed: 2022-11-04
Other names: Encyclopedia of Human Genes and Metabolism
Names
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HumanCyc
metasource: Fairsharing.orgversion: FAIRsharing.org: HumanCyc; HumanCyc; DOI: https://doi.org/10.25504/FAIRsharing.zaa7w; Last edited: Oct. 22, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: re3data.org
version: re3data.org: HumanCyc; editing status 2021-04-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3ZS72 last accessed: 2022-11-04
Encyclopedia of Human Genes and Metabolism
metasource: re3data.orgversion: re3data.org: HumanCyc; editing status 2021-04-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3ZS72 last accessed: 2022-11-04
HumanCyc is a bioinformatics database that describes human metabolic pathways and the human genome. By presenting metabolic pathways as an organizing framework for the human genome, HumanCyc provides the user with an extended dimension for functional analysis of Homo sapiens at the genomic level.
Description
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HumanCyc is a bioinformatics database that describes human metabolic pathways and the human genome. By presenting metabolic pathways as an organizing framework for the human genome, HumanCyc provides the user with an extended dimension for functional analysis of Homo sapiens at the genomic level.
metasource: Fairsharing.orgversion: FAIRsharing.org: HumanCyc; HumanCyc; DOI: https://doi.org/10.25504/FAIRsharing.zaa7w; Last edited: Oct. 22, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
HumanCyc provides an encyclopedic reference on human metabolic pathways. It provides a zoomable human metabolic map diagram, and it has been used to generate a steady-state quantitative model of human metabolism. 2016: Subscriptions are now required to access HumanCyc. For more information on obtaining a subscription, click here: http://www.phoenixbioinformatics.org/biocyc#product-biocyc-subscription
metasource: re3data.orgversion: re3data.org: HumanCyc; editing status 2021-04-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3ZS72 last accessed: 2022-11-04
Webpage:
http://www.humancyc.org/Webpage
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http://www.humancyc.org/
metasource: Fairsharing.orgversion: FAIRsharing.org: HumanCyc; HumanCyc; DOI: https://doi.org/10.25504/FAIRsharing.zaa7w; Last edited: Oct. 22, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
https://humancyc.org/
metasource: re3data.orgversion: re3data.org: HumanCyc; editing status 2021-04-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3ZS72 last accessed: 2022-11-04
Licence:
Name: BioCyc Subscription requirementsLicence name
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BioCyc Subscription requirements
metasource: Fairsharing.orgversion: FAIRsharing.org: HumanCyc; HumanCyc; DOI: https://doi.org/10.25504/FAIRsharing.zaa7w; Last edited: Oct. 22, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
other
metasource: re3data.orgversion: re3data.org: HumanCyc; editing status 2021-04-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3ZS72 last accessed: 2022-11-04
Licence URL
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http://www.phoenixbioinformatics.org/biocyc#product-biocyc-subscription
metasource: Fairsharing.orgversion: FAIRsharing.org: HumanCyc; HumanCyc; DOI: https://doi.org/10.25504/FAIRsharing.zaa7w; Last edited: Oct. 22, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
https://www.phoenixbioinformatics.org/biocyc#product-tair-subscription
metasource: re3data.orgversion: re3data.org: HumanCyc; editing status 2021-04-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3ZS72 last accessed: 2022-11-04
Publications:
Publications
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Computational prediction of human metabolic pathways from the complete human genome
PMID: 15642094
metasource: Fairsharing.org
version: FAIRsharing.org: HumanCyc; HumanCyc; DOI: https://doi.org/10.25504/FAIRsharing.zaa7w; Last edited: Oct. 22, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Publications
More detailed information about this field from each metasource.
Computational prediction of human metabolic pathways from the complete human genome
PMID: 15642094
metasource: Fairsharing.org
version: FAIRsharing.org: HumanCyc; HumanCyc; DOI: https://doi.org/10.25504/FAIRsharing.zaa7w; Last edited: Oct. 22, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
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Computational prediction of human metabolic pathways from the complete human genome
PubMed citations: 198.
198 articles citing: Computational prediction of human metabolic pathways from the complete human genome
Next-Generation Grade and Survival Expression Biomarkers of Human Gliomas Based on Algorithmically Reconstructed Molecular Pathways. PMID:35806337
Toxic Metabolites and Inborn Errors of Amino Acid Metabolism: What One Informs about the Other. PMID:35736461
In Situ Assembly of Platinum(II)-Metallopeptide Nanostructures Disrupts Energy Homeostasis and Cellular Metabolism. PMID:35729777
OncoboxPD: human 51 672 molecular pathways database with tools for activity calculating and visualization. PMID:35615022
BioUML-towards a universal research platform. PMID:35536253
HIV-Sheltering Platelets From Immunological Non-Responders Induce a Dysfunctional Glycolytic CD4+ T-Cell Profile. PMID:35222352
Establishment and characterization of prostate organoids from treatment-naïve patients with prostate cancer. PMID:34820005
IID 2021: towards context-specific protein interaction analyses by increased coverage, enhanced annotation and enrichment analysis. PMID:34755877
GPRuler: Metabolic gene-protein-reaction rules automatic reconstruction. PMID:34748537
KLF10 integrates circadian timing and sugar signaling to coordinate hepatic metabolism. PMID:34402428
MitopatHs: a new logically-framed tool for visualizing multiple mitochondrial pathways. PMID:33889820
System-wide identification and prioritization of enzyme substrates by thermal analysis. PMID:33637753
Algorithmic Annotation of Functional Roles for Components of 3,044 Human Molecular Pathways. PMID:33633781
Epidermal Growth Factor Is Essential for the Maintenance of Novel Prostate Epithelial Cells Isolated From Patient-Derived Organoids. PMID:33195205
Expression, Purification, Refolding, and Characterization of a Neverland Protein From Caenorhabditis elegans. PMID:33195160
Lung transcriptome of a COVID-19 patient and systems biology predictions suggest impaired surfactant production which may be druggable by surfactant therapy. PMID:33173052
VARAdb: a comprehensive variation annotation database for human. PMID:33095866
MICA enhances sensitivity to cisplatin in patients with extensive small cell lung cancer via downregulation of ABCG2. PMID:32724354
Antioxidant Activity of Synthetic Polymers of Phenolic Compounds. PMID:32722059
Systematic mapping of genetic interactions for de novo fatty acid synthesis identifies C12orf49 as a regulator of lipid metabolism. PMID:32694731
Genetic Markers for Later Remission in Response to Early Improvement of Antidepressants. PMID:32664413
Metabolomics and Multi-Omics Integration: A Survey of Computational Methods and Resources. PMID:32429287
Characterization of PHGDH expression in bladder cancer: potential targeting therapy with gemcitabine/cisplatin and the contribution of promoter DNA hypomethylation. PMID:32386122
Large-Scale Differential Gene Expression Transcriptomic Analysis Identifies a Metabolic Signature Shared by All Cancer Cells. PMID:32365991
Neutrophil Extracellular Trap Induced Dendritic Cell Activation Leads to Th1 Polarization in Type 1 Diabetes. PMID:32346380
Current Status and Future Prospects of Genome-Scale Metabolic Modeling to Optimize the Use of Mesenchymal Stem Cells in Regenerative Medicine. PMID:32296688
Transcriptomic and Genomic Testing to Guide Individualized Treatment in Chemoresistant Gastric Cancer Case. PMID:32210001
CaMeRe: A Novel Tool for Inference of Cancer Metabolic Reprogramming. PMID:32161720
Exploring Integrative Analysis Using the BioMedical Evidence Graph. PMID:32097025
Molecular heterogeneity in breast carcinoma cells with increased invasive capacities. PMID:32061169
RNA sequencing profiles and diagnostic signatures linked with response to ramucirumab in gastric cancer. PMID:32060041
Mutation Enrichment and Transcriptomic Activation Signatures of 419 Molecular Pathways in Cancer. PMID:31979117
Fine-mapping of 150 breast cancer risk regions identifies 191 likely target genes. PMID:31911677
The plasma metabolome of women in early pregnancy differs from that of non-pregnant women. PMID:31726468
Pathway Commons 2019 Update: integration, analysis and exploration of pathway data. PMID:31647099
Gene connectivity and enzyme evolution in the human metabolic network. PMID:31481097
A meta-analysis of multiple matched aCGH/expression cancer datasets reveals regulatory relationships and pathway enrichment of potential oncogenes. PMID:31335867
Human Systems Biology and Metabolic Modelling: A Review-From Disease Metabolism to Precision Medicine. PMID:31281846
Genetic Predisposition for Immune System, Hormone, and Metabolic Dysfunction in Myalgic Encephalomyelitis/Chronic Fatigue Syndrome: A Pilot Study. PMID:31179255
Differential methylation of enhancer at IGF2 is associated with abnormal dopamine synthesis in major psychosis. PMID:31053723
Genes with High Network Connectivity Are Enriched for Disease Heritability. PMID:31051114
The MACADAM database: a MetAboliC pAthways DAtabase for Microbial taxonomic groups for mining potential metabolic capacities of archaeal and bacterial taxonomic groups. PMID:31032842
The Transcriptomic Toolbox: Resources for Interpreting Large Gene Expression Data within a Precision Medicine Context for Metabolic Disease Atherosclerosis. PMID:31032818
BZW2 gene knockdown induces cell growth inhibition, G1 arrest and apoptosis in muscle-invasive bladder cancers: A microarray pathway analysis. PMID:30932331
netDx: interpretable patient classification using integrated patient similarity networks. PMID:30872331
Pathway Based Analysis of Mutation Data Is Efficient for Scoring Target Cancer Drugs. PMID:30728774
Ulcerative colitis: functional analysis of the in-depth proteome. PMID:30718987
Integrative Analyses of Genes Associated with Subcutaneous Insulin Resistance. PMID:30678306
Pathway Instability Is an Effective New Mutation-Based Type of Cancer Biomarkers. PMID:30662873
Influence of pathway topology and functional class on the molecular evolution of human metabolic genes. PMID:30550546
Metabolomics and transcriptomics pathway approach reveals outcome-specific perturbations in COPD. PMID:30459441
Establishing normal metabolism and differentiation in hepatocellular carcinoma cells by culturing in adult human serum. PMID:30076349
Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci. PMID:29892016
Patient Similarity Networks for Precision Medicine. PMID:29860027
GFPT2-Expressing Cancer-Associated Fibroblasts Mediate Metabolic Reprogramming in Human Lung Adenocarcinoma. PMID:29760045
A review of computational tools for design and reconstruction of metabolic pathways. PMID:29552648
From correlation to causation: analysis of metabolomics data using systems biology approaches. PMID:29503602
Evaluation and comparison of bioinformatic tools for the enrichment analysis of metabolomics data. PMID:29291722
MitoCore: a curated constraint-based model for simulating human central metabolism. PMID:29178872
Modelling pyruvate dehydrogenase under hypoxia and its role in cancer metabolism. PMID:29134060
Association analysis identifies 65 new breast cancer risk loci. PMID:29059683
Chronic obstructive pulmonary disease candidate gene prioritization based on metabolic networks and functional information. PMID:28873096
Advances in metabolome information retrieval: turning chemistry into biology. Part II: biological information recovery. PMID:28842777
Aspergillus Secondary Metabolite Database, a resource to understand the Secondary metabolome of Aspergillus genus. PMID:28779078
YAP suppresses gluconeogenic gene expression through PGC1α. PMID:28714135
NFPscanner: a webtool for knowledge-based deciphering of biomedical networks. PMID:28521733
ADH1B: From alcoholism, natural selection, and cancer to the human phenome. PMID:28349588
A Comprehensive Gene Expression Meta-analysis Identifies Novel Immune Signatures in Rheumatoid Arthritis Patients. PMID:28210261
Systematic analyses of drugs and disease indications in RepurposeDB reveal pharmacological, biological and epidemiological factors influencing drug repositioning. PMID:28200013
Sparse network modeling and metscape-based visualization methods for the analysis of large-scale metabolomics data. PMID:28137712
Integrative modelling of tumour DNA methylation quantifies the contribution of metabolism. PMID:27966532
Metabolic flexibility of mitochondrial respiratory chain disorders predicted by computer modelling. PMID:27697518
Antioxidant-rich leaf extract of Barringtonia racemosa significantly alters the in vitro expression of genes encoding enzymes that are involved in methylglyoxal degradation III. PMID:27635343
The metabolic background is a global player in Saccharomyces gene expression epistasis. PMID:27572163
Combination therapy with BPTES nanoparticles and metformin targets the metabolic heterogeneity of pancreatic cancer. PMID:27559084
Integration of targeted metabolomics and transcriptomics identifies deregulation of phosphatidylcholine metabolism in Huntington's disease peripheral blood samples. PMID:27524956
Clinical Metabolomics: The New Metabolic Window for Inborn Errors of Metabolism Investigations in the Post-Genomic Era. PMID:27447622
ArthropodaCyc: a CycADS powered collection of BioCyc databases to analyse and compare metabolism of arthropods. PMID:27242037
Changes in plasma metabolites and glucose homeostasis during omega-3 polyunsaturated fatty acid supplementation in women with polycystic ovary syndrome. PMID:27182493
Pathway analysis in attention deficit hyperactivity disorder: An ensemble approach. PMID:27004716
Representation and inference of cellular architecture for metabolic reconstruction and modeling. PMID:26628588
Towards improved genome-scale metabolic network reconstructions: unification, transcript specificity and beyond. PMID:26615025
A constraint-based modelling approach to metabolic dysfunction in Parkinson's disease. PMID:26504511
Integrated metabolic modelling reveals cell-type specific epigenetic control points of the macrophage metabolic network. PMID:26480823
Longitudinal omics modeling and integration in clinical metabonomics research: challenges in childhood metabolic health research. PMID:26301225
Human metabolic atlas: an online resource for human metabolism. PMID:26209309
Using gene expression signatures to identify novel treatment strategies in gulf war illness. PMID:26156520
Visualisation of BioPAX Networks using BioLayout Express (3D). PMID:25949802
Measuring semantic similarities by combining gene ontology annotations and gene co-function networks. PMID:25886899
Metabolomics and diabetes: analytical and computational approaches. PMID:25713200
Systems genomics evaluation of the SH-SY5Y neuroblastoma cell line as a model for Parkinson's disease. PMID:25528190
Transcriptome alterations of mitochondrial and coagulation function in schizophrenia by cortical sequencing analysis. PMID:25522158
Computational strategies for a system-level understanding of metabolism. PMID:25427076
Systems biology approaches for studying the pathogenesis of non-alcoholic fatty liver disease. PMID:25386055
Ischaemic accumulation of succinate controls reperfusion injury through mitochondrial ROS. PMID:25383517
Identifying common components across biological network graphs using a bipartite data model. PMID:25374613
TrypanoCyc: a community-led biochemical pathways database for Trypanosoma brucei. PMID:25300491
Comparative network analysis via differential graphlet communities. PMID:25283527
Maternal obesity and tobacco use modify the impact of genetic variants on the occurrence of conotruncal heart defects. PMID:25275547
Predicting interactome network perturbations in human cancer: application to gene fusions in acute lymphoblastic leukemia. PMID:25273558
Concept mapping One-Carbon Metabolism to model future ontologies for nutrient-gene-phenotype interactions. PMID:25091042
Systematic analysis of transcription-level effects of neurodegenerative diseases on human brain metabolism by a newly reconstructed brain-specific metabolic network. PMID:25061554
MetDisease--connecting metabolites to diseases via literature. PMID:24713438
Chemical structure identification in metabolomics: computational modeling of experimental features. PMID:24688698
Prediction of individualized therapeutic vulnerabilities in cancer from genomic profiles. PMID:24665131
Detection of type 2 diabetes related modules and genes based on epigenetic networks. PMID:24565181
Comparing the Chemical Structure and Protein Content of ChEMBL, DrugBank, Human Metabolome Database and the Therapeutic Target Database. PMID:24533037
Molecular signatures of antibody responses derived from a systems biology study of five human vaccines. PMID:24336226
Automated workflow-based exploitation of pathway databases provides new insights into genetic associations of metabolite profiles. PMID:24320595
Controllability in cancer metabolic networks according to drug targets as driver nodes. PMID:24282504
Using random walks to identify cancer-associated modules in expression data. PMID:24128261
Integrated enrichment analysis of variants and pathways in genome-wide association studies indicates central role for IL-2 signaling genes in type 1 diabetes, and cytokine signaling genes in Crohn's disease. PMID:24098138
In silico enzymatic synthesis of a 400,000 compound biochemical database for nontargeted metabolomics. PMID:23991755
metabolicMine: an integrated genomics, genetics and proteomics data warehouse for common metabolic disease research. PMID:23935057
3Omics: a web-based systems biology tool for analysis, integration and visualization of human transcriptomic, proteomic and metabolomic data. PMID:23875761
A network-based approach for predicting key enzymes explaining metabolite abundance alterations in a disease phenotype. PMID:23870038
An integrative framework for Bayesian variable selection with informative priors for identifying genes and pathways. PMID:23844055
Consensus and conflict cards for metabolic pathway databases. PMID:23803311
Pathway databases: making chemical and biological sense of the genomic data flood. PMID:23706629
GeneSetDB: A comprehensive meta-database, statistical and visualisation framework for gene set analysis. PMID:23650583
CMS: a web-based system for visualization and analysis of genome-wide methylation data of human cancers. PMID:23630576
Heterogeneity of tumor-induced gene expression changes in the human metabolic network. PMID:23604282
Network pharmacology strategies toward multi-target anticancer therapies: from computational models to experimental design principles. PMID:23530504
Integration of clinical data with a genome-scale metabolic model of the human adipocyte. PMID:23511207
SPPS resins impact the PNA-syntheses' improvement. PMID:23423830
Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review. PMID:23384594
Integrated testing strategies for safety assessments. PMID:23338803
BioSM: metabolomics tool for identifying endogenous mammalian biochemical structures in chemical structure space. PMID:23330685
Integrative pathway dissection of molecular mechanisms of moxLDL-induced vascular smooth muscle phenotype transformation. PMID:23324130
An integrative approach to inferring gene regulatory module networks. PMID:23285197
IntPath--an integrated pathway gene relationship database for model organisms and important pathogens. PMID:23282057
HMDB 3.0--The Human Metabolome Database in 2013. PMID:23161693
Pathway Distiller - multisource biological pathway consolidation. PMID:23134636
Associations between maternal genotypes and metabolites implicated in congenital heart defects. PMID:23059056
Mutations in the neverland gene turned Drosophila pachea into an obligate specialist species. PMID:23019649
The genetics of alcohol dependence: advancing towards systems-based approaches. PMID:22854292
DEFOG: discrete enrichment of functionally organized genes. PMID:22706384
Reconstruction of genome-scale active metabolic networks for 69 human cell types and 16 cancer types using INIT. PMID:22615553
Construction and completion of flux balance models from pathway databases. PMID:22262672
Stable isotope-resolved metabolomics and applications for drug development. PMID:22212615
Advanced stoichiometric analysis of metabolic networks of mammalian systems. PMID:22196224
Novel search method for the discovery of functional relationships. PMID:22180409
MMMDB: Mouse Multiple Tissue Metabolome Database. PMID:22139941
Metscape 2 bioinformatics tool for the analysis and visualization of metabolomics and gene expression data. PMID:22135418
DNAtraffic--a new database for systems biology of DNA dynamics during the cell life. PMID:22110027
Critical assessment of human metabolic pathway databases: a stepping stone for future integration. PMID:21999653
Structural diversity of biologically interesting datasets: a scaffold analysis approach. PMID:21824432
A metabolic model of the mitochondrion and its use in modelling diseases of the tricarboxylic acid cycle. PMID:21714867
A survey of metabolic databases emphasizing the MetaCyc family. PMID:21523460
Consensus-phenotype integration of transcriptomic and metabolomic data implies a role for metabolism in the chemosensitivity of tumour cells. PMID:21483477
Modeling cholesterol metabolism by gene expression profiling in the hippocampus. PMID:21451815
Network analysis of human protein location. PMID:21106131
Pathway Commons, a web resource for biological pathway data. PMID:21071392
A detailed genome-wide reconstruction of mouse metabolism based on human Recon 1. PMID:20959003
Prediction of human protein-protein interaction by a mixed Bayesian model and its application to exploring underlying cancer-related pathway crosstalk. PMID:20943681
Gene regulatory network reveals oxidative stress as the underlying molecular mechanism of type 2 diabetes and hypertension. PMID:20942928
The BioPAX community standard for pathway data sharing. PMID:20829833
Reconstruction and flux-balance analysis of the Plasmodium falciparum metabolic network. PMID:20823846
Computational reconstruction of tissue-specific metabolic models: application to human liver metabolism. PMID:20823844
Compartmentalization of the Edinburgh Human Metabolic Network. PMID:20649990
Somatic polyploidy promotes cell function under stress and energy depletion: evidence from tissue-specific mammal transcriptome. PMID:20625914
The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function. PMID:20576703
Use of reconstituted metabolic networks to assist in metabolomic data visualization and mining. PMID:20526351
MetExplore: a web server to link metabolomic experiments and genome-scale metabolic networks. PMID:20444866
Consolidating metabolite identifiers to enable contextual and multi-platform metabolomics data analysis. PMID:20426876
Improved microarray-based decision support with graph encoded interactome data. PMID:20419106
Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology. PMID:19955237
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases. PMID:19850718
HPD: an online integrated human pathway database enabling systems biology studies. PMID:19811689
A mapping of drug space from the viewpoint of small molecule metabolism. PMID:19701464
MouseCyc: a curated biochemical pathways database for the laboratory mouse. PMID:19682380
The conservation and evolutionary modularity of metabolism. PMID:19523219
LeishCyc: a biochemical pathways database for Leishmania major. PMID:19497128
Database resources in metabolomics: an overview. PMID:19418229
Reconstruction of metabolic pathways for the cattle genome. PMID:19284618
ConsensusPathDB--a database for integrating human functional interaction networks. PMID:18940869
PID: the Pathway Interaction Database. PMID:18832364
A combined computational-experimental analyses of selected metabolic enzymes in Pseudomonas species. PMID:18802474
Gene Vector Analysis (Geneva): a unified method to detect differentially-regulated gene sets and similar microarray experiments. PMID:18721468
Meta-analysis approach identifies candidate genes and associated molecular networks for type-2 diabetes mellitus. PMID:18590522
Analysis of Aspergillus nidulans metabolism at the genome-scale. PMID:18405346
An ontology-driven semantic mashup of gene and biological pathway information: application to the domain of nicotine dependence. PMID:18395495
Photosensitivity in Smith-Lemli-Opitz syndrome: a flux balance analysis of altered metabolism. PMID:18188427
Reconstruction and flux analysis of coupling between metabolic pathways of astrocytes and neurons: application to cerebral hypoxia. PMID:18070347
The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases. PMID:17965431
The Edinburgh human metabolic network reconstruction and its functional analysis. PMID:17882155
Organismal complexity, cell differentiation and gene expression: human over mouse. PMID:17881362
A survey of orphan enzyme activities. PMID:17623104
Metabolic network visualization eliminating node redundance and preserving metabolic pathways. PMID:17608928
e-Science and biological pathway semantics. PMID:17493286
Reactome: a knowledge base of biologic pathways and processes. PMID:17367534
From bytes to bedside: data integration and computational biology for translational cancer research. PMID:17319736
Global reconstruction of the human metabolic network based on genomic and bibliomic data. PMID:17267599
'Genome design' model and multicellular complexity: golden middle. PMID:17062620
The Cinderella story of metabolic profiling: does metabolomics get to go to the functional genomics ball? PMID:16553314
WholePathwayScope: a comprehensive pathway-based analysis tool for high-throughput data. PMID:16423281
MetaCyc: a multiorganism database of metabolic pathways and enzymes. PMID:16381923
Expansion of the BioCyc collection of pathway/genome databases to 160 genomes. PMID:16246909
Tags:
Tags
More detailed information about this field from each metasource.
genome
metasource: Fairsharing.org
version: FAIRsharing.org: HumanCyc; HumanCyc; DOI: https://doi.org/10.25504/FAIRsharing.zaa7w; Last edited: Oct. 22, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
pathway model
metasource: Fairsharing.org
version: FAIRsharing.org: HumanCyc; HumanCyc; DOI: https://doi.org/10.25504/FAIRsharing.zaa7w; Last edited: Oct. 22, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
bioinformatics
metasource: re3data.org
version: re3data.org: HumanCyc; editing status 2021-04-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3ZS72 last accessed: 2022-11-04
biotechnology
metasource: re3data.org
version: re3data.org: HumanCyc; editing status 2021-04-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3ZS72 last accessed: 2022-11-04
cancer
metasource: re3data.org
version: re3data.org: HumanCyc; editing status 2021-04-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3ZS72 last accessed: 2022-11-04
epilepsy
metasource: re3data.org
version: re3data.org: HumanCyc; editing status 2021-04-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3ZS72 last accessed: 2022-11-04
evolution
metasource: re3data.org
version: re3data.org: HumanCyc; editing status 2021-04-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3ZS72 last accessed: 2022-11-04
gastroenterology
metasource: re3data.org
version: re3data.org: HumanCyc; editing status 2021-04-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3ZS72 last accessed: 2022-11-04
genomics
metasource: re3data.org
version: re3data.org: HumanCyc; editing status 2021-04-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3ZS72 last accessed: 2022-11-04
life sciences
metasource: re3data.org
version: re3data.org: HumanCyc; editing status 2021-04-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3ZS72 last accessed: 2022-11-04
proteomics
metasource: re3data.org
version: re3data.org: HumanCyc; editing status 2021-04-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3ZS72 last accessed: 2022-11-04
Tags
More detailed information about this field from each metasource.
genome
metasource: Fairsharing.orgversion: FAIRsharing.org: HumanCyc; HumanCyc; DOI: https://doi.org/10.25504/FAIRsharing.zaa7w; Last edited: Oct. 22, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
pathway model
metasource: Fairsharing.orgversion: FAIRsharing.org: HumanCyc; HumanCyc; DOI: https://doi.org/10.25504/FAIRsharing.zaa7w; Last edited: Oct. 22, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
bioinformatics
metasource: re3data.orgversion: re3data.org: HumanCyc; editing status 2021-04-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3ZS72 last accessed: 2022-11-04
biotechnology
metasource: re3data.orgversion: re3data.org: HumanCyc; editing status 2021-04-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3ZS72 last accessed: 2022-11-04
cancer
metasource: re3data.orgversion: re3data.org: HumanCyc; editing status 2021-04-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3ZS72 last accessed: 2022-11-04
epilepsy
metasource: re3data.orgversion: re3data.org: HumanCyc; editing status 2021-04-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3ZS72 last accessed: 2022-11-04
evolution
metasource: re3data.orgversion: re3data.org: HumanCyc; editing status 2021-04-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3ZS72 last accessed: 2022-11-04
gastroenterology
metasource: re3data.orgversion: re3data.org: HumanCyc; editing status 2021-04-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3ZS72 last accessed: 2022-11-04
genomics
metasource: re3data.orgversion: re3data.org: HumanCyc; editing status 2021-04-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3ZS72 last accessed: 2022-11-04
life sciences
metasource: re3data.orgversion: re3data.org: HumanCyc; editing status 2021-04-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3ZS72 last accessed: 2022-11-04
proteomics
metasource: re3data.orgversion: re3data.org: HumanCyc; editing status 2021-04-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3ZS72 last accessed: 2022-11-04
genome pathway model bioinformatics biotechnology cancer epilepsy evolution gastroenterology genomics life sciences proteomics
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