MetaCrop 2.0
Names
More detailed information about this field from each metasource.
MetaCrop 2.0
metasource: Fairsharing.org
version: FAIRsharing.org: MetaCrop 2.0; MetaCrop 2.0; DOI: https://doi.org/10.25504/FAIRsharing.wdbd3r; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
MetaCrop
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:24.881613
metacrop
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:24.881613
Names
More detailed information about this field from each metasource.
MetaCrop 2.0
metasource: Fairsharing.orgversion: FAIRsharing.org: MetaCrop 2.0; MetaCrop 2.0; DOI: https://doi.org/10.25504/FAIRsharing.wdbd3r; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
MetaCrop
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:24.881613
metacrop
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:24.881613
Other names: MetaCrop, metacrop
Names
More detailed information about this field from each metasource.
MetaCrop 2.0
metasource: Fairsharing.orgversion: FAIRsharing.org: MetaCrop 2.0; MetaCrop 2.0; DOI: https://doi.org/10.25504/FAIRsharing.wdbd3r; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
MetaCrop
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:24.881613
metacrop
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:24.881613
The MetaCrop resource contains information on the major metabolic pathways mainly in crops of agricultural and economic importance. The database includes manually curated information on reactions and the kinetic data associated with these reactions. Ontology terms are used and publication identification available to ease mining the data.
Description
More detailed information about this field from each metasource.
The MetaCrop resource contains information on the major metabolic pathways mainly in crops of agricultural and economic importance. The database includes manually curated information on reactions and the kinetic data associated with these reactions. Ontology terms are used and publication identification available to ease mining the data.
metasource: Fairsharing.orgversion: FAIRsharing.org: MetaCrop 2.0; MetaCrop 2.0; DOI: https://doi.org/10.25504/FAIRsharing.wdbd3r; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Biochemical pathways and enzymes in crop plants
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Database that summarizes diverse information about metabolic pathways in crop plants and allows automatic export of information for the creation of detailed metabolic models.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:24.881613
Webpage:
http://metacrop.ipk-gatersleben.deWebpage
More detailed information about this field from each metasource.
http://metacrop.ipk-gatersleben.de
metasource: Fairsharing.orgversion: FAIRsharing.org: MetaCrop 2.0; MetaCrop 2.0; DOI: https://doi.org/10.25504/FAIRsharing.wdbd3r; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
http://metacrop.ipk-gatersleben.de/
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:24.881613
Licence:
Name: UnlicenseLicence name
More detailed information about this field from each metasource.
Publications:
Publications
More detailed information about this field from each metasource.
MetaCrop 2.0: managing and exploring information about crop plant metabolism
PMID: 22086948
metasource: Fairsharing.org
version: FAIRsharing.org: MetaCrop 2.0; MetaCrop 2.0; DOI: https://doi.org/10.25504/FAIRsharing.wdbd3r; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:24.881613
MetaCrop: a detailed database of crop plant metabolism
PMID: 17933764
metasource: Fairsharing.org
version: FAIRsharing.org: MetaCrop 2.0; MetaCrop 2.0; DOI: https://doi.org/10.25504/FAIRsharing.wdbd3r; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Meta-All: a system for managing metabolic pathway information
PMID: 17059592
metasource: Fairsharing.org
version: FAIRsharing.org: MetaCrop 2.0; MetaCrop 2.0; DOI: https://doi.org/10.25504/FAIRsharing.wdbd3r; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Novel developments of the MetaCrop information system for facilitating systems biological approaches
PMID: 20375443
metasource: Fairsharing.org
version: FAIRsharing.org: MetaCrop 2.0; MetaCrop 2.0; DOI: https://doi.org/10.25504/FAIRsharing.wdbd3r; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
http://dx.doi.org/10.1093/nar/GKR1004
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
MetaCrop 2.0: managing and exploring information about crop plant metabolism
PMID: 22086948
metasource: Fairsharing.org
version: FAIRsharing.org: MetaCrop 2.0; MetaCrop 2.0; DOI: https://doi.org/10.25504/FAIRsharing.wdbd3r; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:24.881613
MetaCrop: a detailed database of crop plant metabolism
PMID: 17933764
metasource: Fairsharing.org
version: FAIRsharing.org: MetaCrop 2.0; MetaCrop 2.0; DOI: https://doi.org/10.25504/FAIRsharing.wdbd3r; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Meta-All: a system for managing metabolic pathway information
PMID: 17059592
metasource: Fairsharing.org
version: FAIRsharing.org: MetaCrop 2.0; MetaCrop 2.0; DOI: https://doi.org/10.25504/FAIRsharing.wdbd3r; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Novel developments of the MetaCrop information system for facilitating systems biological approaches
PMID: 20375443
metasource: Fairsharing.org
version: FAIRsharing.org: MetaCrop 2.0; MetaCrop 2.0; DOI: https://doi.org/10.25504/FAIRsharing.wdbd3r; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
http://dx.doi.org/10.1093/nar/GKR1004
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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MetaCrop 2.0: managing and exploring information about crop plant metabolism
PubMed citations: 18.
18 articles citing: MetaCrop 2.0: managing and exploring information about crop plant metabolism
SBGNview: towards data analysis, integration and visualization on all pathways. PMID:34864890
Plants Metabolome Study: Emerging Tools and Techniques. PMID:34834772
Metabolomics: A Way Forward for Crop Improvement. PMID:31847393
---A web resource for nutrient use efficiency-related genes, quantitative trait loci and microRNAs in important cereals and model plants. PMID:30135718
Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data. PMID:30115101
SABIO-RK: an updated resource for manually curated biochemical reaction kinetics. PMID:29092055
From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web resources for mass spectral plant metabolomics. PMID:28520864
Metabolomics, Standards, and Metabolic Modeling for Synthetic Biology in Plants. PMID:26557642
Plant metabolic modeling: achieving new insight into metabolism and metabolic engineering. PMID:25344492
Assessing the metabolic impact of nitrogen availability using a compartmentalized maize leaf genome-scale model. PMID:25248718
Conversion of KEGG metabolic pathways to SBGN maps including automatic layout. PMID:23953132
Recent progress in the development of metabolome databases for plant systems biology. PMID:23577015
Reverse engineering: a key component of systems biology to unravel global abiotic stress cross-talk. PMID:23293646
OPTIMAS-DW: a comprehensive transcriptomics, metabolomics, ionomics, proteomics and phenomics data resource for maize. PMID:23272737
Visual analysis of transcriptome data in the context of anatomical structures and biological networks. PMID:23162564
VANTED v2: a framework for systems biology applications. PMID:23140568
Nutritional metabolomics: progress in addressing complexity in diet and health. PMID:22540256
Creating interactive, web-based and data-enriched maps with the Systems Biology Graphical Notation. PMID:22383037 -
MetaCrop: a detailed database of crop plant metabolism
PubMed citations: 16.
16 articles citing: MetaCrop: a detailed database of crop plant metabolism
Exploring synergies between plant metabolic modelling and machine learning. PMID:35521559
In silico metabolic network analysis of Arabidopsis leaves. PMID:27793154
Understanding Plant Nitrogen Metabolism through Metabolomics and Computational Approaches. PMID:27735856
Metabolomics, Standards, and Metabolic Modeling for Synthetic Biology in Plants. PMID:26557642
FluxMap: a VANTED add-on for the visual exploration of flux distributions in biological networks. PMID:22548786
Creating interactive, web-based and data-enriched maps with the Systems Biology Graphical Notation. PMID:22383037
MMMDB: Mouse Multiple Tissue Metabolome Database. PMID:22139941
MetaCrop 2.0: managing and exploring information about crop plant metabolism. PMID:22086948
A case study for efficient management of high throughput primary lab data. PMID:22005096
Creating views on integrated multidomain data. PMID:21551150
Editing, validating and translating of SBGN maps. PMID:20628075
Creation of a genome-wide metabolic pathway database for Populus trichocarpa using a new approach for reconstruction and curation of metabolic pathways for plants. PMID:20522724
A generic algorithm for layout of biological networks. PMID:19909528
Metabolite signal identification in accurate mass metabolomics data with MZedDB, an interactive m/z annotation tool utilising predicted ionisation behaviour 'rules'. PMID:19622150
How large is the metabolome? A critical analysis of data exchange practices in chemistry. PMID:19415114
Barley genomics: An overview. PMID:18382615 -
Meta-All: a system for managing metabolic pathway information
PubMed citations: 7.
7 articles citing: Meta-All: a system for managing metabolic pathway information
Generation and Evaluation of a Genome-Scale Metabolic Network Model of Synechococcus elongatus PCC7942. PMID:25141288
MetaCrop 2.0: managing and exploring information about crop plant metabolism. PMID:22086948
Reconstruction and analysis of genome-scale metabolic model of a photosynthetic bacterium. PMID:21083885
Flux balance analysis of barley seeds: a computational approach to study systemic properties of central metabolism. PMID:18987214
Barley genomics: An overview. PMID:18382615
MetaCrop: a detailed database of crop plant metabolism. PMID:17933764
METANNOGEN: compiling features of biochemical reactions needed for the reconstruction of metabolic networks. PMID:17408512 -
Novel developments of the MetaCrop information system for facilitating systems biological approaches
PubMed citations: 2.
2 articles citing: Novel developments of the MetaCrop information system for facilitating systems biological approaches
VANTED v2: a framework for systems biology applications. PMID:23140568
MetaCrop 2.0: managing and exploring information about crop plant metabolism. PMID:22086948 - http://dx.doi.org/10.1093/nar/GKR1004
Tags:
Tags
More detailed information about this field from each metasource.
biological process
metasource: Fairsharing.org
version: FAIRsharing.org: MetaCrop 2.0; MetaCrop 2.0; DOI: https://doi.org/10.25504/FAIRsharing.wdbd3r; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
cellular component
metasource: Fairsharing.org
version: FAIRsharing.org: MetaCrop 2.0; MetaCrop 2.0; DOI: https://doi.org/10.25504/FAIRsharing.wdbd3r; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
kinetic model
metasource: Fairsharing.org
version: FAIRsharing.org: MetaCrop 2.0; MetaCrop 2.0; DOI: https://doi.org/10.25504/FAIRsharing.wdbd3r; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
pathway model
metasource: Fairsharing.org
version: FAIRsharing.org: MetaCrop 2.0; MetaCrop 2.0; DOI: https://doi.org/10.25504/FAIRsharing.wdbd3r; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
reaction data
metasource: Fairsharing.org
version: FAIRsharing.org: MetaCrop 2.0; MetaCrop 2.0; DOI: https://doi.org/10.25504/FAIRsharing.wdbd3r; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metabolic and signaling pathways
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metabolic pathways
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
plant databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
general plant databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
endocrinology and metabolism
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:24.881613
plant biology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:24.881613
molecular interactions, pathways and networks
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:24.881613
enzymes
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:24.881613
Tags
More detailed information about this field from each metasource.
biological process
metasource: Fairsharing.orgversion: FAIRsharing.org: MetaCrop 2.0; MetaCrop 2.0; DOI: https://doi.org/10.25504/FAIRsharing.wdbd3r; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
cellular component
metasource: Fairsharing.orgversion: FAIRsharing.org: MetaCrop 2.0; MetaCrop 2.0; DOI: https://doi.org/10.25504/FAIRsharing.wdbd3r; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
kinetic model
metasource: Fairsharing.orgversion: FAIRsharing.org: MetaCrop 2.0; MetaCrop 2.0; DOI: https://doi.org/10.25504/FAIRsharing.wdbd3r; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
pathway model
metasource: Fairsharing.orgversion: FAIRsharing.org: MetaCrop 2.0; MetaCrop 2.0; DOI: https://doi.org/10.25504/FAIRsharing.wdbd3r; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
reaction data
metasource: Fairsharing.orgversion: FAIRsharing.org: MetaCrop 2.0; MetaCrop 2.0; DOI: https://doi.org/10.25504/FAIRsharing.wdbd3r; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metabolic and signaling pathways
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
metabolic pathways
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
plant databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
general plant databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
endocrinology and metabolism
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:24.881613
plant biology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:24.881613
molecular interactions, pathways and networks
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:24.881613
enzymes
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:24.881613
biological process cellular component kinetic model pathway model reaction data metabolic and signaling pathways metabolic and signaling pathways plant plant endocrinology and metabolism plant biology molecular interactions, pathways and networks enzyme
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