Human Endogenous Retrovirus database
Names
More detailed information about this field from each metasource.
Human Endogenous Retrovirus database
metasource: Fairsharing.org
version: FAIRsharing.org: HERVd; Human Endogenous Retrovirus database; DOI: https://doi.org/10.25504/FAIRsharing.jm8fzm; Last edited: March 7, 2019, 10:27 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
HERVd
metasource: Fairsharing.org
version: FAIRsharing.org: HERVd; Human Endogenous Retrovirus database; DOI: https://doi.org/10.25504/FAIRsharing.jm8fzm; Last edited: March 7, 2019, 10:27 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:21.607682
HERVd - Human Endogenous Retrovirus database
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
hervd
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:21.607682
Names
More detailed information about this field from each metasource.
Human Endogenous Retrovirus database
metasource: Fairsharing.orgversion: FAIRsharing.org: HERVd; Human Endogenous Retrovirus database; DOI: https://doi.org/10.25504/FAIRsharing.jm8fzm; Last edited: March 7, 2019, 10:27 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
HERVd
metasource: Fairsharing.orgversion: FAIRsharing.org: HERVd; Human Endogenous Retrovirus database; DOI: https://doi.org/10.25504/FAIRsharing.jm8fzm; Last edited: March 7, 2019, 10:27 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:21.607682
HERVd - Human Endogenous Retrovirus database
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
hervd
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:21.607682
Other names: HERVd, HERVd - Human Endogenous Retrovirus database, hervd
Names
More detailed information about this field from each metasource.
Human Endogenous Retrovirus database
metasource: Fairsharing.orgversion: FAIRsharing.org: HERVd; Human Endogenous Retrovirus database; DOI: https://doi.org/10.25504/FAIRsharing.jm8fzm; Last edited: March 7, 2019, 10:27 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
HERVd
metasource: Fairsharing.orgversion: FAIRsharing.org: HERVd; Human Endogenous Retrovirus database; DOI: https://doi.org/10.25504/FAIRsharing.jm8fzm; Last edited: March 7, 2019, 10:27 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:21.607682
HERVd - Human Endogenous Retrovirus database
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
hervd
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:21.607682
This database is compiled from the human genome nucleotide sequences obtained mostly in the Human Genome Projects. The database makes it possible to continuously improve classification and characterization of retroviral families. The HERV database now contains retroviruses from more than 90 % of the human genome.
Description
More detailed information about this field from each metasource.
This database is compiled from the human genome nucleotide sequences obtained mostly in the Human Genome Projects. The database makes it possible to continuously improve classification and characterization of retroviral families. The HERV database now contains retroviruses from more than 90 % of the human genome.
metasource: Fairsharing.orgversion: FAIRsharing.org: HERVd; Human Endogenous Retrovirus database; DOI: https://doi.org/10.25504/FAIRsharing.jm8fzm; Last edited: March 7, 2019, 10:27 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
Human endogenous retrovirus database
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Human endogenous retroviruses database.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:21.607682
Webpage:
https://herv.img.cas.czWebpage
More detailed information about this field from each metasource.
https://herv.img.cas.cz
metasource: Fairsharing.orgversion: FAIRsharing.org: HERVd; Human Endogenous Retrovirus database; DOI: https://doi.org/10.25504/FAIRsharing.jm8fzm; Last edited: March 7, 2019, 10:27 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:21.607682
http://herv.img.cas.cz/
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Licence:
Name: Creative Commons Attribution 4.0 International (CC BY 4.0)Licence name
More detailed information about this field from each metasource.
Creative Commons Attribution 4.0 International (CC BY 4.0)
metasource: Fairsharing.orgversion: FAIRsharing.org: HERVd; Human Endogenous Retrovirus database; DOI: https://doi.org/10.25504/FAIRsharing.jm8fzm; Last edited: March 7, 2019, 10:27 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
CC-BY-4.0
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:21.607682
Licence URL
More detailed information about this field from each metasource.
https://creativecommons.org/licenses/by/4.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: HERVd; Human Endogenous Retrovirus database; DOI: https://doi.org/10.25504/FAIRsharing.jm8fzm; Last edited: March 7, 2019, 10:27 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
HERVd: database of human endogenous retroviruses
PMID: 11752294
metasource: Fairsharing.org
version: FAIRsharing.org: HERVd; Human Endogenous Retrovirus database; DOI: https://doi.org/10.25504/FAIRsharing.jm8fzm; Last edited: March 7, 2019, 10:27 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
HERVd: the Human Endogenous RetroViruses Database: update
PMID: 14681356
metasource: Fairsharing.org
version: FAIRsharing.org: HERVd; Human Endogenous Retrovirus database; DOI: https://doi.org/10.25504/FAIRsharing.jm8fzm; Last edited: March 7, 2019, 10:27 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:21.607682
Publications
More detailed information about this field from each metasource.
HERVd: database of human endogenous retroviruses
PMID: 11752294
metasource: Fairsharing.org
version: FAIRsharing.org: HERVd; Human Endogenous Retrovirus database; DOI: https://doi.org/10.25504/FAIRsharing.jm8fzm; Last edited: March 7, 2019, 10:27 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
HERVd: the Human Endogenous RetroViruses Database: update
PMID: 14681356
metasource: Fairsharing.org
version: FAIRsharing.org: HERVd; Human Endogenous Retrovirus database; DOI: https://doi.org/10.25504/FAIRsharing.jm8fzm; Last edited: March 7, 2019, 10:27 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:21.607682
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HERVd: database of human endogenous retroviruses
PubMed citations: 35.
35 articles citing: HERVd: database of human endogenous retroviruses
Influenza A Virus Infection Reactivates Human Endogenous Retroviruses Associated with Modulation of Antiviral Immunity. PMID:35891571
Switching Sides: How Endogenous Retroviruses Protect Us from Viral Infections. PMID:33883223
Transcriptional analysis of multiple ovarian cancer cohorts reveals prognostic and immunomodulatory consequences of ERV expression. PMID:33436485
HIV-1 infection activates endogenous retroviral promoters regulating antiviral gene expression. PMID:33021676
Comprehensive genomic analysis reveals dynamic evolution of endogenous retroviruses that code for retroviral-like protein domains. PMID:32963593
Endogenous Retroviruses Activity as a Molecular Signature of Neurodevelopmental Disorders. PMID:31801288
ERVmap analysis reveals genome-wide transcription of human endogenous retroviruses. PMID:30455304
Endogenous retroviral signatures predict immunotherapy response in clear cell renal cell carcinoma. PMID:30137025
Transcriptional Modulation of Human Endogenous Retroviruses in Primary CD4+ T Cells Following Vorinostat Treatment. PMID:29706951
Analysis of Human Endogenous Retrovirus Expression in Multiple Sclerosis Plaques. PMID:28868516
EnHERV: Enrichment analysis of specific human endogenous retrovirus patterns and their neighboring genes. PMID:28472109
Phylogenetic Analysis Reveals That ERVs "Die Young" but HERV-H Is Unusually Conserved. PMID:27295277
Differential expression analysis of human endogenous retroviruses based on ENCODE RNA-seq data. PMID:26530187
A Novel, Highly Selective RT-QPCR Method for Quantification of MSRV Using PNA Clamping Syncytin-1 (ERVWE1). PMID:25976174
Unraveling the web of viroinformatics: computational tools and databases in virus research. PMID:25428870
Human endogenous retrovirus-K(II) envelope induction protects neurons during HIV/AIDS. PMID:24988390
Association of endogenous retroviruses and long terminal repeats with human disorders. PMID:24062987
Microarray-based sketches of the HERV transcriptome landscape. PMID:22761958
A recurrent translocation is mediated by homologous recombination between HERV-H elements. PMID:22260357
Bioinformatics and genomic analysis of transposable elements in eukaryotic genomes. PMID:21850457
Human endogenous retrovirus K106 (HERV-K106) was infectious after the emergence of anatomically modern humans. PMID:21633511
The enemy within: dormant retroviruses awaken. PMID:20448571
Human endogenous retrovirus K (HML-2) elements in the plasma of people with lymphoma and breast cancer. PMID:18632860
A paradigm for virus-host coevolution: sequential counter-adaptations between endogenous and exogenous retroviruses. PMID:17997604
Automated recognition of retroviral sequences in genomic data--RetroTector. PMID:17636050
Rate of recombinational deletion among human endogenous retroviruses. PMID:17581995
Quadruplex DNA: sequence, topology and structure. PMID:17012276
Genomewide screening reveals high levels of insertional polymorphism in the human endogenous retrovirus family HERV-K(HML2): implications for present-day activity. PMID:16160178
Human endogenous retroviral elements as indicators of ectopic recombination events in the primate genome. PMID:16157677
Identification of endogenous retroviral reading frames in the human genome. PMID:15476554
Long-term reinfection of the human genome by endogenous retroviruses. PMID:15044706
HERVd: the Human Endogenous RetroViruses Database: update. PMID:14681356
Shuffling of genes within low-copy repeats on 22q11 (LCR22) by Alu-mediated recombination events during evolution. PMID:14656960
The evolution, distribution and diversity of endogenous retroviruses. PMID:12876457
Processed pseudogenes of human endogenous retroviruses generated by LINEs: their integration, stability, and distribution. PMID:11875026 -
HERVd: the Human Endogenous RetroViruses Database: update
PubMed citations: 27.
27 articles citing: HERVd: the Human Endogenous RetroViruses Database: update
Transcriptome Analyses Implicate Endogenous Retroviruses Involved in the Host Antiviral Immune System through the Interferon Pathway. PMID:34009516
The landscape of viral associations in human cancers. PMID:32025001
High-dose ascorbic acid synergizes with anti-PD1 in a lymphoma mouse model. PMID:31911474
Alternative tumour-specific antigens. PMID:31278396
Endogenous retroviral signatures predict immunotherapy response in clear cell renal cell carcinoma. PMID:30137025
Transcriptional Modulation of Human Endogenous Retroviruses in Primary CD4+ T Cells Following Vorinostat Treatment. PMID:29706951
A Reference Viral Database (RVDB) To Enhance Bioinformatics Analysis of High-Throughput Sequencing for Novel Virus Detection. PMID:29564396
Susceptibility of Human Endogenous Retrovirus Type K to Reverse Transcriptase Inhibitors. PMID:28931682
Analysis of Human Endogenous Retrovirus Expression in Multiple Sclerosis Plaques. PMID:28868516
Expression of evolutionarily novel genes in tumors. PMID:27437030
gEVE: a genome-based endogenous viral element database provides comprehensive viral protein-coding sequences in mammalian genomes. PMID:27242033
Classification and characterization of human endogenous retroviruses; mosaic forms are common. PMID:26800882
Differential expression analysis of human endogenous retroviruses based on ENCODE RNA-seq data. PMID:26530187
Molecular functions of human endogenous retroviruses in health and disease. PMID:26082181
Human Endogenous Retrovirus Type K (HERV-K) Particles Package and Transmit HERV-K-Related Sequences. PMID:25926654
Expansion of a novel endogenous retrovirus throughout the pericentromeres of modern humans. PMID:25886262
Human endogenous retroviral elements promote genome instability via non-allelic homologous recombination. PMID:25246103
Recurrent 8q13.2-13.3 microdeletions associated with branchio-oto-renal syndrome are mediated by human endogenous retroviral (HERV) sequence blocks. PMID:25135225
Recurrent HERV-H-mediated 3q13.2-q13.31 deletions cause a syndrome of hypotonia and motor, language, and cognitive delays. PMID:23878096
HIV infection reveals widespread expansion of novel centromeric human endogenous retroviruses. PMID:23657884
Characterization of human endogenous retroviral elements in the blood of HIV-1-infected individuals. PMID:22031938
Annotation and visualization of endogenous retroviral sequences using the Distributed Annotation System (DAS) and eBioX. PMID:19534743
T cell responses to human endogenous retroviruses in HIV-1 infection. PMID:17997601
Automated recognition of retroviral sequences in genomic data--RetroTector. PMID:17636050
ERV3 and related sequences in humans: structure and RNA expression. PMID:15994821
Identification of endogenous retroviral reading frames in the human genome. PMID:15476554
WAViS server for handling, visualization and presentation of multiple alignments of nucleotide or amino acids sequences. PMID:15215348
Tags:
Tags
More detailed information about this field from each metasource.
classification
metasource: Fairsharing.org
version: FAIRsharing.org: HERVd; Human Endogenous Retrovirus database; DOI: https://doi.org/10.25504/FAIRsharing.jm8fzm; Last edited: March 7, 2019, 10:27 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
deoxyribonucleic acid
metasource: Fairsharing.org
version: FAIRsharing.org: HERVd; Human Endogenous Retrovirus database; DOI: https://doi.org/10.25504/FAIRsharing.jm8fzm; Last edited: March 7, 2019, 10:27 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
genome
metasource: Fairsharing.org
version: FAIRsharing.org: HERVd; Human Endogenous Retrovirus database; DOI: https://doi.org/10.25504/FAIRsharing.jm8fzm; Last edited: March 7, 2019, 10:27 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
retrotransposon
metasource: Fairsharing.org
version: FAIRsharing.org: HERVd; Human Endogenous Retrovirus database; DOI: https://doi.org/10.25504/FAIRsharing.jm8fzm; Last edited: March 7, 2019, 10:27 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
genomics databases (non-vertebrate)
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
viral genome databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
human genes and diseases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
general human genetics databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
nucleic acid sites, features and motifs
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:21.607682
gene and protein families
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:21.607682
virology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:21.607682
Tags
More detailed information about this field from each metasource.
classification
metasource: Fairsharing.orgversion: FAIRsharing.org: HERVd; Human Endogenous Retrovirus database; DOI: https://doi.org/10.25504/FAIRsharing.jm8fzm; Last edited: March 7, 2019, 10:27 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
deoxyribonucleic acid
metasource: Fairsharing.orgversion: FAIRsharing.org: HERVd; Human Endogenous Retrovirus database; DOI: https://doi.org/10.25504/FAIRsharing.jm8fzm; Last edited: March 7, 2019, 10:27 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
genome
metasource: Fairsharing.orgversion: FAIRsharing.org: HERVd; Human Endogenous Retrovirus database; DOI: https://doi.org/10.25504/FAIRsharing.jm8fzm; Last edited: March 7, 2019, 10:27 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
retrotransposon
metasource: Fairsharing.orgversion: FAIRsharing.org: HERVd; Human Endogenous Retrovirus database; DOI: https://doi.org/10.25504/FAIRsharing.jm8fzm; Last edited: March 7, 2019, 10:27 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
genomics databases (non-vertebrate)
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
viral genome databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
human genes and diseases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
general human genetics databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
nucleic acid sites, features and motifs
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:21.607682
gene and protein families
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:21.607682
virology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:21.607682
classification dna genome retrotransposon genomics viral genome human genes and diseases general human genetics nucleic acid sites, features and motifs gene and protein families virology
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