Genomic Observatories Meta-Database
Names
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Genomic Observatories Meta-Database
metasource: Fairsharing.org
version: FAIRsharing.org: GEOME; Genomic Observatories Meta-Database; DOI: https://doi.org/10.25504/FAIRsharing.wOcTaM; Last edited: March 10, 2021, 1:07 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
GEOME
metasource: Fairsharing.org
version: FAIRsharing.org: GEOME; Genomic Observatories Meta-Database; DOI: https://doi.org/10.25504/FAIRsharing.wOcTaM; Last edited: March 10, 2021, 1:07 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: re3data.org
version: re3data.org: Genomic Observatories MetaDatabase; editing status 2021-02-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3SH1G last accessed: 2022-11-04
Genomic Observatories MetaDatabase
metasource: re3data.org
version: re3data.org: Genomic Observatories MetaDatabase; editing status 2021-02-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3SH1G last accessed: 2022-11-04
Names
More detailed information about this field from each metasource.
Genomic Observatories Meta-Database
metasource: Fairsharing.orgversion: FAIRsharing.org: GEOME; Genomic Observatories Meta-Database; DOI: https://doi.org/10.25504/FAIRsharing.wOcTaM; Last edited: March 10, 2021, 1:07 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
GEOME
metasource: Fairsharing.orgversion: FAIRsharing.org: GEOME; Genomic Observatories Meta-Database; DOI: https://doi.org/10.25504/FAIRsharing.wOcTaM; Last edited: March 10, 2021, 1:07 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: re3data.org
version: re3data.org: Genomic Observatories MetaDatabase; editing status 2021-02-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3SH1G last accessed: 2022-11-04
Genomic Observatories MetaDatabase
metasource: re3data.orgversion: re3data.org: Genomic Observatories MetaDatabase; editing status 2021-02-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3SH1G last accessed: 2022-11-04
Other names: GEOME, Genomic Observatories MetaDatabase
Names
More detailed information about this field from each metasource.
Genomic Observatories Meta-Database
metasource: Fairsharing.orgversion: FAIRsharing.org: GEOME; Genomic Observatories Meta-Database; DOI: https://doi.org/10.25504/FAIRsharing.wOcTaM; Last edited: March 10, 2021, 1:07 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
GEOME
metasource: Fairsharing.orgversion: FAIRsharing.org: GEOME; Genomic Observatories Meta-Database; DOI: https://doi.org/10.25504/FAIRsharing.wOcTaM; Last edited: March 10, 2021, 1:07 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: re3data.org
version: re3data.org: Genomic Observatories MetaDatabase; editing status 2021-02-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3SH1G last accessed: 2022-11-04
Genomic Observatories MetaDatabase
metasource: re3data.orgversion: re3data.org: Genomic Observatories MetaDatabase; editing status 2021-02-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3SH1G last accessed: 2022-11-04
The Genomic Observatories Meta-Database (GEOME) is a web-based database that captures the who, what, where, and when of biological samples and associated genetic sequences. GEOME helps users with the following goals: ensure the metadata from your biological samples is findable, accessible, interoperable, and reusable; improve the quality of your data and comply with global data standards; and integrate with R, ease publication to NCBI's sequence read archive, and work with an associated LIMS. The initial use case for GEOME came from the Diversity of the Indo-Pacific Network (DIPnet) resource.
Description
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The Genomic Observatories Meta-Database (GEOME) is a web-based database that captures the who, what, where, and when of biological samples and associated genetic sequences. GEOME helps users with the following goals: ensure the metadata from your biological samples is findable, accessible, interoperable, and reusable; improve the quality of your data and comply with global data standards; and integrate with R, ease publication to NCBI's sequence read archive, and work with an associated LIMS. The initial use case for GEOME came from the Diversity of the Indo-Pacific Network (DIPnet) resource.
metasource: Fairsharing.orgversion: FAIRsharing.org: GEOME; Genomic Observatories Meta-Database; DOI: https://doi.org/10.25504/FAIRsharing.wOcTaM; Last edited: March 10, 2021, 1:07 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: re3data.org
version: re3data.org: Genomic Observatories MetaDatabase; editing status 2021-02-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3SH1G last accessed: 2022-11-04
Webpage:
https://geome-db.org/Webpage
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https://geome-db.org/
metasource: Fairsharing.orgversion: FAIRsharing.org: GEOME; Genomic Observatories Meta-Database; DOI: https://doi.org/10.25504/FAIRsharing.wOcTaM; Last edited: March 10, 2021, 1:07 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
https://geome-db.org
metasource: re3data.orgversion: re3data.org: Genomic Observatories MetaDatabase; editing status 2021-02-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3SH1G last accessed: 2022-11-04
Licence:
Name: GEOME Data Usage PolicyLicence name
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GEOME Data Usage Policy
metasource: Fairsharing.orgversion: FAIRsharing.org: GEOME; Genomic Observatories Meta-Database; DOI: https://doi.org/10.25504/FAIRsharing.wOcTaM; Last edited: March 10, 2021, 1:07 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
CC0
metasource: re3data.orgversion: re3data.org: Genomic Observatories MetaDatabase; editing status 2021-02-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3SH1G last accessed: 2022-11-04
Licence URL
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https://geome-db.org/about
metasource: Fairsharing.orgversion: FAIRsharing.org: GEOME; Genomic Observatories Meta-Database; DOI: https://doi.org/10.25504/FAIRsharing.wOcTaM; Last edited: March 10, 2021, 1:07 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
http://diversityindopacific.net/data-usage-agreement/
metasource: re3data.orgversion: re3data.org: Genomic Observatories MetaDatabase; editing status 2021-02-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3SH1G last accessed: 2022-11-04
Publications:
Publications
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The Genomic Observatories Metadatabase (GeOMe): A new repository for field and sampling event metadata associated with genetic samples
PMID: 28771471
metasource: Fairsharing.org
version: FAIRsharing.org: GEOME; Genomic Observatories Meta-Database; DOI: https://doi.org/10.25504/FAIRsharing.wOcTaM; Last edited: March 10, 2021, 1:07 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Publications
More detailed information about this field from each metasource.
The Genomic Observatories Metadatabase (GeOMe): A new repository for field and sampling event metadata associated with genetic samples
PMID: 28771471
metasource: Fairsharing.org
version: FAIRsharing.org: GEOME; Genomic Observatories Meta-Database; DOI: https://doi.org/10.25504/FAIRsharing.wOcTaM; Last edited: March 10, 2021, 1:07 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
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The Genomic Observatories Metadatabase (GeOMe): A new repository for field and sampling event metadata associated with genetic samples
PubMed citations: 23.
23 articles citing: The Genomic Observatories Metadatabase (GeOMe): A new repository for field and sampling event metadata associated with genetic samples
Toward global integration of biodiversity big data: a harmonized metabarcode data generation module for terrestrial arthropods. PMID:35852418
State of biodiversity documentation in the Philippines: Metadata gaps, taxonomic biases, and spatial biases in the DNA barcode data of animal and plant taxa in the context of species occurrence data. PMID:35341040
Darwinian genomics and diversity in the tree of life. PMID:35042807
Toward a genome sequence for every animal: Where are we now? PMID:34862323
Tracking, Synthesizing, and Sharing Global Batrachochytrium Data at AmphibianDisease.org. PMID:34692807
Dongsha Atoll is an important stepping-stone that promotes regional genetic connectivity in the South China Sea. PMID:34540369
Opportunities and challenges of macrogenetic studies. PMID:34408318
Restricted dispersal in a sea of gene flow. PMID:34004134
A streamlined workflow for conversion, peer review, and publication of genomics metadata as omics data papers. PMID:33983435
Internet of Samples (iSamples): Toward an interdisciplinary cyberinfrastructure for material samples. PMID:33960385
Connecting high-throughput biodiversity inventories: Opportunities for a site-based genomic framework for global integration and synthesis. PMID:33432777
Genomic and morphological evidence of distinct populations in the endemic common (weedy) seadragon Phyllopteryx taeniolatus (Syngnathidae) along the east coast of Australia. PMID:33362197
Does color matter? Molecular and ecological divergence in four sympatric color morphs of a coral reef fish. PMID:33005338
"METAGENOTE: a simplified web platform for metadata annotation of genomic samples and streamlined submission to NCBI's sequence read archive". PMID:32883210
Distinct patterns of hybridization across a suture zone in a coral reef fish (Dascyllus trimaculatus). PMID:32211158
Global marine biodiversity in the context of achieving the Aichi Targets: ways forward and addressing data gaps. PMID:31681508
RADseq analyses reveal concordant Indian Ocean biogeographic and phylogeographic boundaries in the reef fish Dascyllus trimaculatus. PMID:31218014
Categorization of species as native or nonnative using DNA sequence signatures without a complete reference library. PMID:31050090
A coalescent sampler successfully detects biologically meaningful population structure overlooked by F-statistics. PMID:30697337
Evidence of cryptic species in the blenniid Cirripectesalboapicalis species complex, with zoogeographic implications for the South Pacific. PMID:30613176
Genomic islands of divergence in the Yellow Tang and the Brushtail Tang Surgeonfishes. PMID:30271536
Clipperton Atoll as a model to study small marine populations: Endemism and the genomic consequences of small population size. PMID:29949612
The little shrimp that could: phylogeography of the circumtropical Stenopus hispidus (Crustacea: Decapoda), reveals divergent Atlantic and Pacific lineages. PMID:29527409
Tags:
Tags
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biological sample
metasource: Fairsharing.org
version: FAIRsharing.org: GEOME; Genomic Observatories Meta-Database; DOI: https://doi.org/10.25504/FAIRsharing.wOcTaM; Last edited: March 10, 2021, 1:07 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
biological sample annotation
metasource: Fairsharing.org
version: FAIRsharing.org: GEOME; Genomic Observatories Meta-Database; DOI: https://doi.org/10.25504/FAIRsharing.wOcTaM; Last edited: March 10, 2021, 1:07 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
centrally registered identifier
metasource: Fairsharing.org
version: FAIRsharing.org: GEOME; Genomic Observatories Meta-Database; DOI: https://doi.org/10.25504/FAIRsharing.wOcTaM; Last edited: March 10, 2021, 1:07 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
evolution
metasource: Fairsharing.org
version: FAIRsharing.org: GEOME; Genomic Observatories Meta-Database; DOI: https://doi.org/10.25504/FAIRsharing.wOcTaM; Last edited: March 10, 2021, 1:07 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: re3data.org
version: re3data.org: Genomic Observatories MetaDatabase; editing status 2021-02-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3SH1G last accessed: 2022-11-04
biodiversity
metasource: re3data.org
version: re3data.org: Genomic Observatories MetaDatabase; editing status 2021-02-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3SH1G last accessed: 2022-11-04
biology
metasource: re3data.org
version: re3data.org: Genomic Observatories MetaDatabase; editing status 2021-02-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3SH1G last accessed: 2022-11-04
ecology
metasource: re3data.org
version: re3data.org: Genomic Observatories MetaDatabase; editing status 2021-02-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3SH1G last accessed: 2022-11-04
genetics
metasource: re3data.org
version: re3data.org: Genomic Observatories MetaDatabase; editing status 2021-02-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3SH1G last accessed: 2022-11-04
genomic
metasource: re3data.org
version: re3data.org: Genomic Observatories MetaDatabase; editing status 2021-02-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3SH1G last accessed: 2022-11-04
metadata
metasource: re3data.org
version: re3data.org: Genomic Observatories MetaDatabase; editing status 2021-02-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3SH1G last accessed: 2022-11-04
Tags
More detailed information about this field from each metasource.
biological sample
metasource: Fairsharing.orgversion: FAIRsharing.org: GEOME; Genomic Observatories Meta-Database; DOI: https://doi.org/10.25504/FAIRsharing.wOcTaM; Last edited: March 10, 2021, 1:07 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
biological sample annotation
metasource: Fairsharing.orgversion: FAIRsharing.org: GEOME; Genomic Observatories Meta-Database; DOI: https://doi.org/10.25504/FAIRsharing.wOcTaM; Last edited: March 10, 2021, 1:07 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
centrally registered identifier
metasource: Fairsharing.orgversion: FAIRsharing.org: GEOME; Genomic Observatories Meta-Database; DOI: https://doi.org/10.25504/FAIRsharing.wOcTaM; Last edited: March 10, 2021, 1:07 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
evolution
metasource: Fairsharing.orgversion: FAIRsharing.org: GEOME; Genomic Observatories Meta-Database; DOI: https://doi.org/10.25504/FAIRsharing.wOcTaM; Last edited: March 10, 2021, 1:07 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: re3data.org
version: re3data.org: Genomic Observatories MetaDatabase; editing status 2021-02-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3SH1G last accessed: 2022-11-04
biodiversity
metasource: re3data.orgversion: re3data.org: Genomic Observatories MetaDatabase; editing status 2021-02-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3SH1G last accessed: 2022-11-04
biology
metasource: re3data.orgversion: re3data.org: Genomic Observatories MetaDatabase; editing status 2021-02-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3SH1G last accessed: 2022-11-04
ecology
metasource: re3data.orgversion: re3data.org: Genomic Observatories MetaDatabase; editing status 2021-02-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3SH1G last accessed: 2022-11-04
genetics
metasource: re3data.orgversion: re3data.org: Genomic Observatories MetaDatabase; editing status 2021-02-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3SH1G last accessed: 2022-11-04
genomic
metasource: re3data.orgversion: re3data.org: Genomic Observatories MetaDatabase; editing status 2021-02-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3SH1G last accessed: 2022-11-04
metadata
metasource: re3data.orgversion: re3data.org: Genomic Observatories MetaDatabase; editing status 2021-02-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3SH1G last accessed: 2022-11-04
biological sample biological sample annotation centrally registered identifier evolution biodiversity ecology genetics genomic metadata
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