Tag: ecology

A 16S rRNA gene database which provides chimera screening, standard alignment, and taxonomic classification using multiple published taxonomies.

Chaperonins are a diverse family of molecular chaperones present in the plastids, mitochondria, and cytoplasm of eukaryotes, and in bacteria and archaea. The family is divided into group I (CPN60, also known as Hsp60 or GroEL, found in bacteria, some ...

The Genomic Observatories Meta-Database (GEOME) is a web-based database that captures the who, what, where, and when of biological samples and associated genetic sequences. GEOME helps users with the following goals: ensure the metadata from your bio ...

The Ocean Gene Atlas service provides data mining access to three complementary data objects: gene sequence catalogs (ENA), sample environmental context (PANGAEA), and gene abundances estimates in samples (computed by mapping sequence reads onto gene ...

Database of all currently available Symbiodinium sequences and associated host information of data collected from the Great Barrier Reef into a single relational database.

Database and portal that provides integrated access to georeferenced marker genes, environment data and marine genome and metagenome projects for microbial ecological genomics. All data are stored in the Microbial Ecological Genomics DataBase (MegDB) ...

Comprehensive database of transposable elements in conifers.

A database for the integration and access to knowledge on host-symbiont relationships.

An open-access curated barcode library for diatoms. Diatoms (Bacillariophyta) are ubiquitous microalgae which produce a siliceous exoskeleton and which make a major contribution to the productivity of oceans and freshwaters. They display a huge dive ...

Animal Social Networks Repository - repository of interaction data from published studies of wild, captive, and domesticated animals.

A database portal containing esources that can be used to infer baseline species conditions.

a genomic database of rice relatives for rice research | Welcome to RiceRelativesGD, a genomic database of rice relatives for rice research! | The cultivated rice (Oryza sativa) is one of the most important crops in the world

New open data resource for comparative studies of an old insect order. The Odonate Phenotypic DataBase is a resource for dragonfly and damselfly phenotypes. The database consists of a variety of morphological, behavioural, and bio-geographical infor ...

WARPP is the Web Application for the Research of Parasitic Plants, a community hub for access, information sharing and analysis of parasitic plant-specific data. The aim of this resource is to facilitate international efforts for the study of parasit ...

World Data Center of Microorganisms collections

BExIS is the online data repository and information system of the Biodiversity Exploratories Project (BE). The BE is a German network of biodiversity related working groups from areas such as vegetation and soil science, zoology and forestry. Up to t ...

TEAM is devoted to monitoring long-term trends in biodiversity, land cover change, climate and ecosystem services in tropical forests. Tropical forests received first billing because of their overwhelming significance to the global biosphere (e.g., t ...

An Open Access Data Repository of Mass Spectra for Chemical Ecology.

Diatoms.org represents such a content curation community, providing open, online access to a vast amount of recent and historical information on North American diatom taxonomy and ecology.

Universal Catalog Database for biological findings

A global tree allometry and crown architecture database.

The Gene Expression Database of Poplar under Stress.

An online database for the dragonflies and damselflies of Bangladesh. Welcome to the Odonata of Bangladesh, database of the dragonflies and damselflies of Bangladesh. Situated in the South-east Asia, Bangladesh is gifted with the rich network of wat ...

Database and analysis platform for gene expression and alternative splicing of fish species.

The Database of Pollinator Interactions (DoPI) documents British pollinator-plant associations.

A database of food-derived bioactive peptides (DFBP), containing a total of 6276 peptide entries in 31 types from different sources.

AnimalTraits is a curated database containing body mass, metabolic rate and brain size measurements across a wide range of terrestrial animal taxa.

dmdScheme is an R package for creating a template domain specific scheme. It contains the basic functionality needed for all metadata schemes based on the dmdScheme.

The purpose of this web portal is to facilitate the discoverability of public data on plant biology managed by different laboratories across the world. The web portal indexes and makes findable any kind of plant data. Plant DataDiscovery is an imple ...

Rcompadre and Rage are two R packages to facilitate the use of the COMPADRE and COMADRE databases and calculation of life history traits from matrix population models. It is an R package to facilitate working with the COM(P)ADRE Plant and Animal Matr ...

This project aims at building an International Wheat Information System (WheatIS) to support the wheat research community. The main objective is to provide a single-access web based system to access to the available data resources and bioinformatics ...

RARe is a research infrastructure registered on the french national roadmap that brings together five networks of BRCs conserving genetic, genomic, and biological resources assembled and characterized by research on domestic animals, model or cultiva ...

A method of using global evidence for local decision making. Metadataset (www.metadataset.com) is a collection of open data from scientific publications. These publications are about the management of agricultural and natural resources (e.g., crops, ...

ISTA Research Explorer is an online digital repository of multi-disciplinary research datasets as well as publications produced at IST Austria, hosted by the Library. ISTA researchers who have produced research data associated with an existing or for ...

The National Ecological Observatory Network (NEON) is a continental-scale observatory designed to gather and provide 30 years of ecological data on the impacts of climate change, land use change and invasive species on natural resources and biodivers ...

FAIDARE: FAIR Data-finder for Agronomic Research. The purpose of this portal is to facilitate the discoverability of public data on plant biology from a federation of established data repositories. It is based on the Breeding API (BrAPI) specificat ...

The PLANTS Database provides standardized information about the vascular plants, mosses, liverworts, hornworts, and lichens of the U.S. and its territories. It includes names, plant symbols, checklists, distributional data, species abstracts, charact ...

BioVeL is a virtual e-laboratory that supports research on biodiversity issues using large amounts of data from cross-disciplinary sources. BioVeL supports the development and use of workflows to process data. It offers the possibility to either use ...

A cross-sectional analysis of the emergency events database from a pediatric perspective. The international disasters database. Disaster group: Two main groups of disasters are distinguished in EM-DAT: natural disasters and technological disasters. ...

This interface provides access to several types of data related to the Chesapeake Bay. Bay Program databases can be queried based upon user-defined inputs such as geographic region and date range. Each query results in a downloadable, tab- or comma-d ...

The Environmental Data Initiative Repository concentrates on studies of ecological processes that play out at time scales spanning decades to centuries including those of the NSF Long Term Ecological Research (LTER) program, the NSF Macrosystems Bi ...

VegBank is the vegetation plot database of the Ecological Society of America's Panel on Vegetation Classification. VegBank consists of three linked databases that contain the actual plot records, vegetation types recognized in the U.S. National Veg ...

The KNB Data Repository is an international repository intended to facilitate ecological, environmental and earth science research in the broadest senses. For scientists, the KNB Data Repository is an efficient way to share, discover, access and int ...

Genome resource samples of wild animals, particularly those of endangered mammalian and avian species, are very difficult to collect. In Korea, many of these animals such as tigers, leopards, bears, wolves, foxes, gorals, and river otters, are either ...

CeR – Central Repository is the institutional digital repository of the Institute of Chemistry, Technology and Metallurgy, University of Belgrade. The aim of the repository is to provide open access to publications and other research outputs resultin ...