FAANG metadata sample specification standard
The FAANG metadata sample specification document describes the principles and structure for the FAANG metadata guidance. The main goal of the FAANG standards is to ensure all FAANG samples are well described and that the description is well structured. In the sample context, we consider donor animals, tissue samples, primary cells or any other biological material to be samples. The FAANG project will establish an infrastructure capable of efficiently analyzing genome-wide functional data for animal species.
Description
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The FAANG metadata sample specification document describes the principles and structure for the FAANG metadata guidance. The main goal of the FAANG standards is to ensure all FAANG samples are well described and that the description is well structured. In the sample context, we consider donor animals, tissue samples, primary cells or any other biological material to be samples. The FAANG project will establish an infrastructure capable of efficiently analyzing genome-wide functional data for animal species.
metasource: Fairsharing.orgversion: FAIRsharing.org: FAANG metadata sample specification standard; FAANG metadata sample specification standard; DOI: https://doi.org/10.25504/FAIRsharing.yedsf5; Last edited: Feb. 7, 2021, 9:09 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Webpage:
https://github.com/FAANG/faang-metadata/blob/master/docs/faang_sample_metadata.mdWebpage
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https://github.com/FAANG/faang-metadata/blob/master/docs/faang_sample_metadata.md
metasource: Fairsharing.orgversion: FAIRsharing.org: FAANG metadata sample specification standard; FAANG metadata sample specification standard; DOI: https://doi.org/10.25504/FAIRsharing.yedsf5; Last edited: Feb. 7, 2021, 9:09 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Licence:
Name: Fort Lauderdale PrinciplesLicence name
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Fort Lauderdale Principles
metasource: Fairsharing.orgversion: FAIRsharing.org: FAANG metadata sample specification standard; FAANG metadata sample specification standard; DOI: https://doi.org/10.25504/FAIRsharing.yedsf5; Last edited: Feb. 7, 2021, 9:09 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Licence URL
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http://www.faang.org/data-share-principle
metasource: Fairsharing.orgversion: FAIRsharing.org: FAANG metadata sample specification standard; FAANG metadata sample specification standard; DOI: https://doi.org/10.25504/FAIRsharing.yedsf5; Last edited: Feb. 7, 2021, 9:09 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Publications:
Publications
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FAANG, establishing metadata standards, validation and best practices for the farmed and companion animal community
PMID: 30311252
metasource: Fairsharing.org
version: FAIRsharing.org: FAANG metadata sample specification standard; FAANG metadata sample specification standard; DOI: https://doi.org/10.25504/FAIRsharing.yedsf5; Last edited: Feb. 7, 2021, 9:09 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Publications
More detailed information about this field from each metasource.
FAANG, establishing metadata standards, validation and best practices for the farmed and companion animal community
PMID: 30311252
metasource: Fairsharing.org
version: FAIRsharing.org: FAANG metadata sample specification standard; FAANG metadata sample specification standard; DOI: https://doi.org/10.25504/FAIRsharing.yedsf5; Last edited: Feb. 7, 2021, 9:09 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
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FAANG, establishing metadata standards, validation and best practices for the farmed and companion animal community
PubMed citations: 13.
13 articles citing: FAANG, establishing metadata standards, validation and best practices for the farmed and companion animal community
Tissue Resources for the Functional Annotation of Animal Genomes. PMID:34234809
The FAANG Data Portal: Global, Open-Access, "FAIR", and Richly Validated Genotype to Phenotype Data for High-Quality Functional Annotation of Animal Genomes. PMID:34220930
"Adopt-a-Tissue" Initiative Advances Efforts to Identify Tissue-Specific Histone Marks in the Mare. PMID:33841506
Global Analysis of Transcription Start Sites in the New Ovine Reference Genome (Oar rambouillet v1.0). PMID:33193703
The European Nucleotide Archive in 2020. PMID:33175160
Functional Annotation of the Transcriptome of the Pig, Sus scrofa, Based Upon Network Analysis of an RNAseq Transcriptional Atlas. PMID:32117413
Multi-species annotation of transcriptome and chromatin structure in domesticated animals. PMID:31884969
A Mini-Atlas of Gene Expression for the Domestic Goat (Capra hircus). PMID:31749840
Elimination of Reference Mapping Bias Reveals Robust Immune Related Allele-Specific Expression in Crossbred Sheep. PMID:31608110
A Gene Expression Atlas of the Domestic Water Buffalo (Bubalus bubalis). PMID:31428126
Comprehensive Transcriptional Profiling of the Gastrointestinal Tract of Ruminants from Birth to Adulthood Reveals Strong Developmental Stage Specific Gene Expression. PMID:30530642
BioSamples database: an updated sample metadata hub. PMID:30407529
The European Nucleotide Archive in 2018. PMID:30395270
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biological sample annotation
metasource: Fairsharing.org
version: FAIRsharing.org: FAANG metadata sample specification standard; FAANG metadata sample specification standard; DOI: https://doi.org/10.25504/FAIRsharing.yedsf5; Last edited: Feb. 7, 2021, 9:09 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
cell
metasource: Fairsharing.org
version: FAIRsharing.org: FAANG metadata sample specification standard; FAANG metadata sample specification standard; DOI: https://doi.org/10.25504/FAIRsharing.yedsf5; Last edited: Feb. 7, 2021, 9:09 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
cell culture
metasource: Fairsharing.org
version: FAIRsharing.org: FAANG metadata sample specification standard; FAANG metadata sample specification standard; DOI: https://doi.org/10.25504/FAIRsharing.yedsf5; Last edited: Feb. 7, 2021, 9:09 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
cell line
metasource: Fairsharing.org
version: FAIRsharing.org: FAANG metadata sample specification standard; FAANG metadata sample specification standard; DOI: https://doi.org/10.25504/FAIRsharing.yedsf5; Last edited: Feb. 7, 2021, 9:09 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
tissue
metasource: Fairsharing.org
version: FAIRsharing.org: FAANG metadata sample specification standard; FAANG metadata sample specification standard; DOI: https://doi.org/10.25504/FAIRsharing.yedsf5; Last edited: Feb. 7, 2021, 9:09 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Tags
More detailed information about this field from each metasource.
biological sample annotation
metasource: Fairsharing.orgversion: FAIRsharing.org: FAANG metadata sample specification standard; FAANG metadata sample specification standard; DOI: https://doi.org/10.25504/FAIRsharing.yedsf5; Last edited: Feb. 7, 2021, 9:09 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
cell
metasource: Fairsharing.orgversion: FAIRsharing.org: FAANG metadata sample specification standard; FAANG metadata sample specification standard; DOI: https://doi.org/10.25504/FAIRsharing.yedsf5; Last edited: Feb. 7, 2021, 9:09 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
cell culture
metasource: Fairsharing.orgversion: FAIRsharing.org: FAANG metadata sample specification standard; FAANG metadata sample specification standard; DOI: https://doi.org/10.25504/FAIRsharing.yedsf5; Last edited: Feb. 7, 2021, 9:09 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
cell line
metasource: Fairsharing.orgversion: FAIRsharing.org: FAANG metadata sample specification standard; FAANG metadata sample specification standard; DOI: https://doi.org/10.25504/FAIRsharing.yedsf5; Last edited: Feb. 7, 2021, 9:09 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
tissue
metasource: Fairsharing.orgversion: FAIRsharing.org: FAANG metadata sample specification standard; FAANG metadata sample specification standard; DOI: https://doi.org/10.25504/FAIRsharing.yedsf5; Last edited: Feb. 7, 2021, 9:09 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
biological sample annotation cell cell culture cell line tissue
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