Biological Collections Ontology
Names
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Biological Collections Ontology
metasource: Fairsharing.org
version: FAIRsharing.org: BCO; Biological Collections Ontology; DOI: https://doi.org/10.25504/FAIRsharing.8ktkqy; Last edited: Jan. 30, 2020, 12:35 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
metasource: Biontology / Bioportal
version: 2021-11-14 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/BCO
BCO
metasource: Fairsharing.org
version: FAIRsharing.org: BCO; Biological Collections Ontology; DOI: https://doi.org/10.25504/FAIRsharing.8ktkqy; Last edited: Jan. 30, 2020, 12:35 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
metasource: Biontology / Bioportal
version: 2021-11-14 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/BCO
Names
More detailed information about this field from each metasource.
Biological Collections Ontology
metasource: Fairsharing.orgversion: FAIRsharing.org: BCO; Biological Collections Ontology; DOI: https://doi.org/10.25504/FAIRsharing.8ktkqy; Last edited: Jan. 30, 2020, 12:35 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
metasource: Biontology / Bioportal
version: 2021-11-14 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/BCO
BCO
metasource: Fairsharing.orgversion: FAIRsharing.org: BCO; Biological Collections Ontology; DOI: https://doi.org/10.25504/FAIRsharing.8ktkqy; Last edited: Jan. 30, 2020, 12:35 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
metasource: Biontology / Bioportal
version: 2021-11-14 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/BCO
Names
More detailed information about this field from each metasource.
Biological Collections Ontology
metasource: Fairsharing.orgversion: FAIRsharing.org: BCO; Biological Collections Ontology; DOI: https://doi.org/10.25504/FAIRsharing.8ktkqy; Last edited: Jan. 30, 2020, 12:35 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
metasource: Biontology / Bioportal
version: 2021-11-14 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/BCO
BCO
metasource: Fairsharing.orgversion: FAIRsharing.org: BCO; Biological Collections Ontology; DOI: https://doi.org/10.25504/FAIRsharing.8ktkqy; Last edited: Jan. 30, 2020, 12:35 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
metasource: Biontology / Bioportal
version: 2021-11-14 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/BCO
The Biological Collections Ontology (BCO) supports the interoperability of biodiversity data, including data on museum collections, environmental/metagenomic samples, and ecological surveys. The BCO covers distinctions between individuals, organisms, voucher specimens, lots, samples, the relations between these entities, and the processes governing the creation and use of "samples". Also within scope are properties including collector, location, time, storage environment, containers, institution, and collection identifiers.
Description
More detailed information about this field from each metasource.
The Biological Collections Ontology (BCO) supports the interoperability of biodiversity data, including data on museum collections, environmental/metagenomic samples, and ecological surveys. The BCO covers distinctions between individuals, organisms, voucher specimens, lots, samples, the relations between these entities, and the processes governing the creation and use of "samples". Also within scope are properties including collector, location, time, storage environment, containers, institution, and collection identifiers.
metasource: Fairsharing.orgversion: FAIRsharing.org: BCO; Biological Collections Ontology; DOI: https://doi.org/10.25504/FAIRsharing.8ktkqy; Last edited: Jan. 30, 2020, 12:35 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
BCO supports the interoperability of biodiversity data, including data on museum collections, environmental/metagenomic samples, and ecological surveys. A key feature of BCO is an ontological interpretation of Darwin Core terms.
metasource: Biontology / Bioportalversion: 2021-11-14 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/BCO
Webpage:
https://github.com/BiodiversityOntologies/bcoWebpage
More detailed information about this field from each metasource.
https://github.com/BiodiversityOntologies/bco
metasource: Fairsharing.orgversion: FAIRsharing.org: BCO; Biological Collections Ontology; DOI: https://doi.org/10.25504/FAIRsharing.8ktkqy; Last edited: Jan. 30, 2020, 12:35 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
https://github.com/BiodiversityOntologies/bcom/p/bco/
metasource: Biontology / Bioportalversion: 2021-11-14 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/BCO
Licence:
Name: Creative Commons CC0 1.0 Universal (CC0 1.0) Public Domain DedicationLicence name
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Creative Commons CC0 1.0 Universal (CC0 1.0) Public Domain Dedication
metasource: Fairsharing.orgversion: FAIRsharing.org: BCO; Biological Collections Ontology; DOI: https://doi.org/10.25504/FAIRsharing.8ktkqy; Last edited: Jan. 30, 2020, 12:35 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Licence URL
More detailed information about this field from each metasource.
https://creativecommons.org/publicdomain/zero/1.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: BCO; Biological Collections Ontology; DOI: https://doi.org/10.25504/FAIRsharing.8ktkqy; Last edited: Jan. 30, 2020, 12:35 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
Semantics in support of biodiversity knowledge discovery: an introduction to the biological collections ontology and related ontologies
PMID: 24595056
metasource: Fairsharing.org
version: FAIRsharing.org: BCO; Biological Collections Ontology; DOI: https://doi.org/10.25504/FAIRsharing.8ktkqy; Last edited: Jan. 30, 2020, 12:35 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Publications
More detailed information about this field from each metasource.
Semantics in support of biodiversity knowledge discovery: an introduction to the biological collections ontology and related ontologies
PMID: 24595056
metasource: Fairsharing.org
version: FAIRsharing.org: BCO; Biological Collections Ontology; DOI: https://doi.org/10.25504/FAIRsharing.8ktkqy; Last edited: Jan. 30, 2020, 12:35 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
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Semantics in support of biodiversity knowledge discovery: an introduction to the biological collections ontology and related ontologies
PubMed citations: 31.
31 articles citing: Semantics in support of biodiversity knowledge discovery: an introduction to the biological collections ontology and related ontologies
Past and future uses of text mining in ecology and evolution. PMID:35582795
Providing Adverse Outcome Pathways from the AOP-Wiki in a Semantic Web Format to Increase Usability and Accessibility of the Content. PMID:35388368
PREGO: A Literature and Data-Mining Resource to Associate Microorganisms, Biological Processes, and Environment Types. PMID:35208748
Ontology-Enriched Specifications Enabling Findable, Accessible, Interoperable, and Reusable Marine Metagenomic Datasets in Cyberinfrastructure Systems. PMID:34956127
Transforming the study of organisms: Phenomic data models and knowledge bases. PMID:33232313
Molecular Detection Mapping and Analysis Platform for R (MDMAPR) facilitating the standardization, analysis, visualization, and sharing of qPCR data and metadata. PMID:33150057
FAIR digital objects in environmental and life sciences should comprise workflow operation design data and method information for repeatability of study setups and reproducibility of results. PMID:32815545
Towards a catalogue of biodiversity databases: An ontological case study. PMID:32269475
FoodOn: a harmonized food ontology to increase global food traceability, quality control and data integration. PMID:31304272
Organizing phenotypic data-a semantic data model for anatomy. PMID:31221226
The Natural History Museum Data Portal. PMID:30985890
ZooArchNet: Connecting zooarchaeological specimens to the biodiversity and archaeology data networks. PMID:30978247
Integrating herbarium specimen observations into global phenology data systems. PMID:30937223
Developing a vocabulary and ontology for modeling insect natural history data: example data, use cases, and competency questions. PMID:30918448
Agronomic Linked Data (AgroLD): A knowledge-based system to enable integrative biology in agronomy. PMID:30500839
The Plant Phenology Ontology: A New Informatics Resource for Large-Scale Integration of Plant Phenology Data. PMID:29765382
Herbarium data: Global biodiversity and societal botanical needs for novel research. PMID:29732255
Digitization protocol for scoring reproductive phenology from herbarium specimens of seed plants. PMID:29732253
OpenBiodiv-O: ontology of the OpenBiodiv knowledge management system. PMID:29347997
The anatomy of phenotype ontologies: principles, properties and applications. PMID:28387809
Site-based data curation based on hot spring geobiology. PMID:28253269
Eliciting and Representing High-Level Knowledge Requirements to Discover Ecological Knowledge in Flower-Visiting Data. PMID:27851814
The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants. PMID:27842607
The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation. PMID:27664130
Emerging semantics to link phenotype and environment. PMID:26713234
BaMBa: towards the integrated management of Brazilian marine environmental data. PMID:26454874
Community next steps for making globally unique identifiers work for biocollections data. PMID:25901117
Ontology application and use at the ENCODE DCC. PMID:25776021
Modeling a microbial community and biodiversity assay with OBO Foundry ontologies: the interoperability gains of a modular approach. PMID:25632945
The trouble with triplets in biodiversity informatics: a data-driven case against current identifier practices. PMID:25470125
The BiSciCol Triplifier: bringing biodiversity data to the Semantic Web. PMID:25073721
Tags:
Tags
More detailed information about this field from each metasource.
biological sample
metasource: Fairsharing.org
version: FAIRsharing.org: BCO; Biological Collections Ontology; DOI: https://doi.org/10.25504/FAIRsharing.8ktkqy; Last edited: Jan. 30, 2020, 12:35 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
biological sample annotation
metasource: Fairsharing.org
version: FAIRsharing.org: BCO; Biological Collections Ontology; DOI: https://doi.org/10.25504/FAIRsharing.8ktkqy; Last edited: Jan. 30, 2020, 12:35 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
environmental material
metasource: Fairsharing.org
version: FAIRsharing.org: BCO; Biological Collections Ontology; DOI: https://doi.org/10.25504/FAIRsharing.8ktkqy; Last edited: Jan. 30, 2020, 12:35 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
taxonomic classification
metasource: Fairsharing.org
version: FAIRsharing.org: BCO; Biological Collections Ontology; DOI: https://doi.org/10.25504/FAIRsharing.8ktkqy; Last edited: Jan. 30, 2020, 12:35 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Tags
More detailed information about this field from each metasource.
biological sample
metasource: Fairsharing.orgversion: FAIRsharing.org: BCO; Biological Collections Ontology; DOI: https://doi.org/10.25504/FAIRsharing.8ktkqy; Last edited: Jan. 30, 2020, 12:35 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
biological sample annotation
metasource: Fairsharing.orgversion: FAIRsharing.org: BCO; Biological Collections Ontology; DOI: https://doi.org/10.25504/FAIRsharing.8ktkqy; Last edited: Jan. 30, 2020, 12:35 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
environmental material
metasource: Fairsharing.orgversion: FAIRsharing.org: BCO; Biological Collections Ontology; DOI: https://doi.org/10.25504/FAIRsharing.8ktkqy; Last edited: Jan. 30, 2020, 12:35 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
taxonomic classification
metasource: Fairsharing.orgversion: FAIRsharing.org: BCO; Biological Collections Ontology; DOI: https://doi.org/10.25504/FAIRsharing.8ktkqy; Last edited: Jan. 30, 2020, 12:35 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
biological sample biological sample annotation environmental material taxonomic classification
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