CyanoBase
CyanoBase is the genome database for cyanobacteria, which are model organisms for photosynthesis. The database houses cyanobacteria species information, complete genome sequences, genome-scale experiment data, gene information, gene annotations and mutant information.
Description
More detailed information about this field from each metasource.
CyanoBase is the genome database for cyanobacteria, which are model organisms for photosynthesis. The database houses cyanobacteria species information, complete genome sequences, genome-scale experiment data, gene information, gene annotations and mutant information.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:16.689212
Webpage:
http://genome.kazusa.or.jp/cyanobaseWebpage
More detailed information about this field from each metasource.
http://genome.kazusa.or.jp/cyanobase
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:16.689212
Publications:
Publications
More detailed information about this field from each metasource.
CyanoBase: the cyanobacteria genome database update 2010
PMID: 19880388
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:16.689212
Publications
More detailed information about this field from each metasource.
CyanoBase: the cyanobacteria genome database update 2010
PMID: 19880388
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:16.689212
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CyanoBase: the cyanobacteria genome database update 2010
PubMed citations: 70.
70 articles citing: CyanoBase: the cyanobacteria genome database update 2010
Transcriptome and metabolome analyses of response of Synechocystis sp. PCC 6803 to methyl viologen. PMID:34668984
A Systematic Survey of the Light/Dark-dependent Protein Degradation Events in a Model Cyanobacterium. PMID:34655801
CyanoOmicsDB: an integrated omics database for functional genomic analysis of cyanobacteria. PMID:34614159
Genetic, Genomics, and Responses to Stresses in Cyanobacteria: Biotechnological Implications. PMID:33805386
Impaired cell-cell communication in the multicellular cyanobacterium Anabaena affects carbon uptake, photosynthesis, and the cell wall. PMID:33458622
Executable biochemical space for specification and analysis of biochemical systems. PMID:32915842
Reconstruction of a regulated two-cell metabolic model to study biohydrogen production in a diazotrophic cyanobacterium Anabaena variabilis ATCC 29413. PMID:31978122
The Signal Transduction Protein PII Controls Ammonium, Nitrate and Urea Uptake in Cyanobacteria. PMID:31293555
Disruption of cyanobacterial γ-aminobutyric acid shunt pathway reduces metabolites levels in tricarboxylic acid cycle, but enhances pyruvate and poly(3-hydroxybutyrate) accumulation. PMID:31160681
BioPS: System for screening and assessment of biofuel-production potential of cyanobacteria. PMID:30096176
Chlorosis as a Developmental Program in Cyanobacteria: The Proteomic Fundament for Survival and Awakening. PMID:29848780
Finding novel relationships with integrated gene-gene association network analysis of Synechocystis sp. PCC 6803 using species-independent text-mining. PMID:29844966
Surface Display of Small Affinity Proteins on Synechocystis sp. Strain PCC 6803 Mediated by Fusion to the Major Type IV Pilin PilA1. PMID:29844032
Identification of the DNA methyltransferases establishing the methylome of the cyanobacterium Synechocystis sp. PCC 6803. PMID:29444255
A Protocol for Generating and Exchanging (Genome-Scale) Metabolic Resource Allocation Models. PMID:28878200
Minimal tool set for a prokaryotic circadian clock. PMID:28732467
Translating Divergent Environmental Stresses into a Common Proteome Response through the Histidine Kinase 33 (Hik33) in a Model Cyanobacterium. PMID:28668777
Cyanobacteria as Chassis for Industrial Biotechnology: Progress and Prospects. PMID:27916886
CyanoBase: a large-scale update on its 20th anniversary. PMID:27899668
A Comprehensively Curated Genome-Scale Two-Cell Model for the Heterocystous Cyanobacterium Anabaena sp. PCC 7120. PMID:27899536
Loss-of-function of an Arabidopsis NADPH pyrophosphohydrolase, AtNUDX19, impacts on the pyridine nucleotides status and confers photooxidative stress tolerance. PMID:27874073
Comparison of aldehyde-producing activities of cyanobacterial acyl-(acyl carrier protein) reductases. PMID:27822307
Antioxidant properties in some selected cyanobacteria isolated from fresh water bodies of Sri Lanka. PMID:27625779
Culturing Synechocystis sp. Strain PCC 6803 with N2 and CO2 in a Diel Regime Reveals Multiphase Glycogen Dynamics with Low Maintenance Costs. PMID:27208121
Transcriptional response of Prochlorococcus to co-culture with a marine Alteromonas: differences between strains and the involvement of putative infochemicals. PMID:27128996
Global Proteomic Analysis Reveals an Exclusive Role of Thylakoid Membranes in Bioenergetics of a Model Cyanobacterium. PMID:27056914
Essential Genome of the Metabolically Versatile Alphaproteobacterium Rhodopseudomonas palustris. PMID:26712940
Investigation of a Quadruplex-Forming Repeat Sequence Highly Enriched in Xanthomonas and Nostoc sp. PMID:26695179
Advances in Metabolic Engineering of Cyanobacteria for Photosynthetic Biochemical Production. PMID:26516923
Identification of a transporter Slr0982 involved in ethanol tolerance in cyanobacterium Synechocystis sp. PCC 6803. PMID:26052317
Toward the complete proteome of Synechocystis sp. PCC 6803. PMID:25862646
The composition of the global and feature specific cyanobacterial core-genomes. PMID:25852675
CyanOmics: an integrated database of omics for the model cyanobacterium Synechococcus sp. PCC 7002. PMID:25632108
Systematically ranking the tightness of membrane association for peripheral membrane proteins (PMPs). PMID:25505158
Synergy: a web resource for exploring gene regulation in Synechocystis sp. PCC6803. PMID:25420108
All1371 is a polyphosphate-dependent glucokinase in Anabaena sp. PCC 7120. PMID:25320362
Structure-function of cyanobacterial outer-membrane protein, Slr1270: homolog of Escherichia coli drug export/colicin import protein, TolC. PMID:25218435
FusoBase: an online Fusobacterium comparative genomic analysis platform. PMID:25149689
Toward a systems-level understanding of gene regulatory, protein interaction, and metabolic networks in cyanobacteria. PMID:25071821
The FurA regulon in Anabaena sp. PCC 7120: in silico prediction and experimental validation of novel target genes. PMID:24503250
Comparative genome analysis of the closely related Synechocystis strains PCC 6714 and PCC 6803. PMID:24408876
Rapid construction of metabolic models for a family of Cyanobacteria using a multiple source annotation workflow. PMID:24369854
The nitrogen-regulated response regulator NrrA controls cyanophycin synthesis and glycogen catabolism in the cyanobacterium Synechocystis sp. PCC 6803. PMID:24337581
Chorismate pyruvate-lyase and 4-hydroxy-3-solanesylbenzoate decarboxylase are required for plastoquinone biosynthesis in the cyanobacterium Synechocystis sp. PCC6803. PMID:24337576
CyanoBase and RhizoBase: databases of manually curated annotations for cyanobacterial and rhizobial genomes. PMID:24275496
Functional proteomic discovery of Slr0110 as a central regulator of carbohydrate metabolism in Synechocystis species PCC6803. PMID:24169622
Using transcriptomics to improve butanol tolerance of Synechocystis sp. strain PCC 6803. PMID:24056459
Export of extracellular polysaccharides modulates adherence of the Cyanobacterium synechocystis. PMID:24040267
The outer membrane TolC-like channel HgdD is part of tripartite resistance-nodulation-cell division (RND) efflux systems conferring multiple-drug resistance in the Cyanobacterium Anabaena sp. PCC7120. PMID:24014018
Synthetic biology of cyanobacteria: unique challenges and opportunities. PMID:24009604
Development of Synechocystis sp. PCC 6803 as a phototrophic cell factory. PMID:23945601
Occurrence of cyclic di-GMP-modulating output domains in cyanobacteria: an illuminating perspective. PMID:23943760
How cyanobacteria pose new problems to old methods: challenges in microarray time series analysis. PMID:23601192
Novel thylakoid membrane GreenCut protein CPLD38 impacts accumulation of the cytochrome b6f complex and associated regulatory processes. PMID:23303190
Reconstruction and comparison of the metabolic potential of cyanobacteria Cyanothece sp. ATCC 51142 and Synechocystis sp. PCC 6803. PMID:23133581
The redox-sensing transcriptional regulator RexT controls expression of thioredoxin A2 in the cyanobacterium Anabaena sp. strain PCC 7120. PMID:23027868
Spatial ordering of chromosomes enhances the fidelity of chromosome partitioning in cyanobacteria. PMID:22869746
Upregulation of plasmid genes during stationary phase in Synechocystis sp. strain PCC 6803, a cyanobacterium. PMID:22636001
Genome-scale modeling of light-driven reductant partitioning and carbon fluxes in diazotrophic unicellular cyanobacterium Cyanothece sp. ATCC 51142. PMID:22529767
ProPortal: a resource for integrated systems biology of Prochlorococcus and its phage. PMID:22102570
Membrane proteins in four acts: function precedes structure determination. PMID:22079407
Target highlights in CASP9: Experimental target structures for the critical assessment of techniques for protein structure prediction. PMID:22020785
Synergistic use of plant-prokaryote comparative genomics for functional annotations. PMID:21810204
The GreenCut2 resource, a phylogenomically derived inventory of proteins specific to the plant lineage. PMID:21515685
Synechococcus sp. strain PCC 7002 nifJ mutant lacking pyruvate:ferredoxin oxidoreductase. PMID:21317262
Genomics of microalgae, fuel for the future? PMID:21255351
Concerted changes in gene expression and cell physiology of the cyanobacterium Synechocystis sp. strain PCC 6803 during transitions between nitrogen and light-limited growth. PMID:21205618
Ultraviolet stress delays chromosome replication in light/dark synchronized cells of the marine cyanobacterium Prochlorococcus marinus PCC9511. PMID:20670397
The metabolic network of Synechocystis sp. PCC 6803: systemic properties of autotrophic growth. PMID:20616194
Phylogenomic analysis of the Chlamydomonas genome unmasks proteins potentially involved in photosynthetic function and regulation. PMID:20490922
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Tags
More detailed information about this field from each metasource.
model organisms
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:16.689212
genomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:16.689212
molecular interactions, pathways and networks
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:16.689212
Tags
More detailed information about this field from each metasource.
model organisms
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:16.689212
genomics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:16.689212
molecular interactions, pathways and networks
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:16.689212
model organisms genomics molecular interactions, pathways and networks
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