MachiBase

Description

More detailed information about this field from each metasource.

Drosophila melanogaster 5' mRNA transcription start site database

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

PRODORIC2

TrSDB

Transcription factor database

YeTFaSCo

Yeast Transcription Factor binding Site sequence Collection

OnTheFly

DNA-binding specificities of transcription factors in Drosophila

Factorbook

Human transcription factor binding data from ChIP-seq

SNP2TFBS

Regulatory SNPs affecting predicted transcription factor binding sites

CTCF Binding Site Database

Experimentally identified and predicted CTCF binding sties

TTSMI

Triplex Target DNA Sites in the human genome

HTPSELEX

Transcription factor binding site sequences obtained using high-throughput SELEX method

DPRP

A database of phenotype-specific regulatory programs derived from transcription factor binding data

TFBSbank

Transcription factor binding profiles deduced from ChIP-seq or ChIP-chip data

BloodChIP

Transcription factor binding profiles in human haematopoietic stem/progenitor cells

CMGSDB

Computational models for gene silencing in C. elegans

Greglist

G-quadruplex motifs and potentially G-quadruplex regulated genes

TRED - Transcriptional Regulatory Element Database

Transcriptional regulatory element database

PlantProm

Plant promoter sequences

SCPD - Saccharomyces cerevisiae promoter database

A database of yeast promoters

DataBase of Transcriptional Start Sites

This database includes TSS data from adult and embryonic human tissue. DBTSS now contains 491 million TSS tag sequences for collected from a total of 20 tissues and 7 cell cultures.

FlyTF

FlyTF (v2) is a manually curated catalogue of Drosophila site-specific transcription factors (TFs). It integrates proteins identified as DNA-binding TFs by computational prediction based on structural ...

Gene Transcription Regulation Database

Gene Transcription Regulation Database (GTRD) is a database of transcription factor binding sites (TFBSs) identified by ChIP-seq experiments for human and mouse.

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