Entrez
NCBI information retrieval system, including GenBank, MMDB (structures), genomes, population sets, OMIM, taxonomy and PubMed.
Description
More detailed information about this field from each metasource.
NCBI information retrieval system, including GenBank, MMDB (structures), genomes, population sets, OMIM, taxonomy and PubMed.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:30:57.636780
Webpage:
https://www.ncbi.nlm.nih.gov/Entrez/Webpage
More detailed information about this field from each metasource.
https://www.ncbi.nlm.nih.gov/Entrez/
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:30:57.636780
Publications:
Publications
More detailed information about this field from each metasource.
Publications
More detailed information about this field from each metasource.-
GenBank
PubMed citations: 122.
122 articles citing: GenBank
From a genome assembly to full regulatory network prediction: the case study of Rhodotorula toruloides putative Haa1-regulon. PMID:34376148
Evaluation of the potency of FDA-approved drugs on wild type and mutant SARS-CoV-2 helicase (Nsp13). PMID:32980406
Targeting SARS-CoV-2 Nsp12/Nsp8 interaction interface with approved and investigational drugs: an in silico structure-based approach. PMID:32933378
Methods in Lung Microbiome Research. PMID:31661299
Effect of Selected Stilbenoids on Human Fecal Microbiota. PMID:30791436
Identification and genome analysis of Deinococcus actinosclerus SJTR1, a novel 17β-estradiol degradation bacterium. PMID:30306002
aPPRove: An HMM-Based Method for Accurate Prediction of RNA-Pentatricopeptide Repeat Protein Binding Events. PMID:27560805
A database for the taxonomic and phylogenetic identification of the genus Bradyrhizobium using multilocus sequence analysis. PMID:26040196
No association between Epstein-Barr Virus and Mouse Mammary Tumor Virus with breast cancer in Mexican women. PMID:24131889
Characterization of free nitrogen fixing bacteria of the genus Azotobacter in organic vegetable-grown Colombian soils. PMID:24031700
Elucidating the identity of resistance mechanisms to prednisolone exposure in acute lymphoblastic leukemia cells through transcriptomic analysis: A computational approach. PMID:22185641
Detection of the full-length transcript variant for neurokinin-1 receptor in human whole blood associated with enhanced reinforcement of clot by substance-P. PMID:22057425
How do thermophilic proteins and proteomes withstand high temperature? PMID:21723832
Jumbled genomes: missing Apicomplexan synteny. PMID:21504890
Expression of myriapod pair rule gene orthologs. PMID:21352542
Genome-wide characterization of the biggest grass, bamboo, based on 10,608 putative full-length cDNA sequences. PMID:20565830
Evolution of spliceosomal introns following endosymbiotic gene transfer. PMID:20178587
The mitochondrial genomes of sponges provide evidence for multiple invasions by Repetitive Hairpin-forming Elements (RHE). PMID:20003196
Effect of the earthworms Lumbricus terrestris and Aporrectodea caliginosa on bacterial diversity in soil. PMID:19888626
Sequence ontology annotation guide. PMID:18629179
Evolution of exceptionally large genes in prokaryotes. PMID:18322635
Metagenomic characterization of Chesapeake Bay virioplankton. PMID:17921274
Design and implementation of a generalized laboratory data model. PMID:17897463
The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families. PMID:17355171
The genome of Hyperthermus butylicus: a sulfur-reducing, peptide fermenting, neutrophilic Crenarchaeote growing up to 108 degrees C. PMID:17350933
Conservation of the TRAPPII-specific subunits of a Ypt/Rab exchanger complex. PMID:17274825
SemCat: semantically categorized entities for genomics. PMID:17238442
ApiDB: integrated resources for the apicomplexan bioinformatics resource center. PMID:17098930
A computational genomics approach to identify cis-regulatory modules from chromatin immunoprecipitation microarray data--a case study using E2F1. PMID:17053090
From functional genomics to functional immunomics: new challenges, old problems, big rewards. PMID:16863395
2DDB - a bioinformatics solution for analysis of quantitative proteomics data. PMID:16549013
GOBASE--a database of organelle and bacterial genome information. PMID:16381962
LMPD: LIPID MAPS proteome database. PMID:16381922
TcruziDB: an integrated, post-genomics community resource for Trypanosoma cruzi. PMID:16381904
Transterm--extended search facilities and improved integration with other databases. PMID:16381889
The distribution of SNPs in human gene regulatory regions. PMID:16209714
On the role of basic residues in adapting the reaction centre-LH1 complex for growth at elevated temperatures in purple bacteria. PMID:16172928
Genome-wide promoter extraction and analysis in human, mouse, and rat. PMID:16086854
Variations in plant metallothioneins: the heavy metal hyperaccumulator Thlaspi caerulescens as a study case. PMID:16052319
The genome of Sulfolobus acidocaldarius, a model organism of the Crenarchaeota. PMID:15995215
SEARCHGTr: a program for analysis of glycosyltransferases involved in glycosylation of secondary metabolites. PMID:15980457
Direct isolation and identification of promoters in the human genome. PMID:15899964
Comparison of the PhoPQ regulon in Escherichia coli and Salmonella typhimurium. PMID:15883881
Nonrandom distribution and frequencies of genomic and EST-derived microsatellite markers in rice, wheat, and barley. PMID:15720707
Computational prediction of human metabolic pathways from the complete human genome. PMID:15642094
The WRKY transcription factor superfamily: its origin in eukaryotes and expansion in plants. PMID:15629062
EST pipeline system: detailed and automated EST data processing and mining. PMID:15629036
Identifying estrogen receptor alpha target genes using integrated computational genomics and chromatin immunoprecipitation microarray. PMID:15608294
Brassica ASTRA: an integrated database for Brassica genomic research. PMID:15608282
NMPdb: Database of Nuclear Matrix Proteins. PMID:15608168
Functional analyses of the chitin-binding domains and the catalytic domain of Brassica juncea chitinase BjCHI1. PMID:15604744
EST-analysis of the thermo-acidophilic red microalga Galdieria sulphuraria reveals potential for lipid A biosynthesis and unveils the pathway of carbon export from rhodoplasts. PMID:15604662
Evolutionary diversity of vertebrate small heat shock proteins. PMID:15599511
SS-Wrapper: a package of wrapper applications for similarity searches on Linux clusters. PMID:15511296
Prokaryote phylogeny based on ribosomal proteins and aminoacyl tRNA synthetases by using the compositional distance approach. PMID:15493472
i-Genome: a database to summarize oligonucleotide data in genomes. PMID:15473908
Branched-chain amino acid aminotransferase and methionine formation in Mycobacterium tuberculosis. PMID:15471546
Introns and splicing elements of five diverse fungi. PMID:15470237
Genome-wide mutagenesis of Zea mays L. using RescueMu transposons. PMID:15461800
Whole-genome expression profiling through fragment display and combinatorial gene identification. PMID:15356287
Enhancement to the RANKPEP resource for the prediction of peptide binding to MHC molecules using profiles. PMID:15349703
Duplicated genes evolve slower than singletons despite the initial rate increase. PMID:15238160
The Bacillus subtilis yqjI gene encodes the NADP+-dependent 6-P-gluconate dehydrogenase in the pentose phosphate pathway. PMID:15231785
KARMA: a web server application for comparing and annotating heterogeneous microarray platforms. PMID:15215426
NRPS-PKS: a knowledge-based resource for analysis of NRPS/PKS megasynthases. PMID:15215420
Using genomic databases for sequence-based biological discovery. PMID:15208739
A Bayesian method for identifying missing enzymes in predicted metabolic pathway databases. PMID:15189570
Genome annotation of a 1.5 Mb region of human chromosome 6q23 encompassing a quantitative trait locus for fetal hemoglobin expression in adults. PMID:15169551
Identification of related gene/protein names based on an HMM of name variations. PMID:15130538
Isolation, characterization, and in situ detection of a novel chemolithoautotrophic sulfur-oxidizing bacterium in wastewater biofilms growing under microaerophilic conditions. PMID:15128575
Progress towards mapping the universe of protein folds. PMID:15128436
Frequent occurrence of recognition site-like sequences in the restriction endonucleases. PMID:15113406
Functional classification of proteins and protein variants. PMID:15087495
The spread of LAGLIDADG homing endonuclease genes in rDNA. PMID:15069127
Occurrence and phylogenetic diversity of Sphingomonas strains in soils contaminated with polycyclic aromatic hydrocarbons. PMID:15066784
Comparison of computational methods for identifying translation initiation sites in EST data. PMID:15053846
What does the future hold for clinical microbiology? PMID:15040262
Restricted distribution of the butyrate kinase pathway among butyrate-producing bacteria from the human colon. PMID:15028695
VisANT: an online visualization and analysis tool for biological interaction data. PMID:15028117
FlyGEM, a full transcriptome array platform for the Drosophila community. PMID:15003122
Mining core histone sequences from public protein databases. PMID:14870656
Evaluation of partial 16S ribosomal DNA sequencing for identification of nocardia species by using the MicroSeq 500 system with an expanded database. PMID:14766819
An unappreciated role for RNA surveillance. PMID:14759258
Whole proteome prokaryote phylogeny without sequence alignment: a K-string composition approach. PMID:14743310
Phylogenetic analysis of Sec7-domain-containing Arf nucleotide exchangers. PMID:14742722
Comparative DNA sequence analysis of mapped wheat ESTs reveals the complexity of genome relationships between rice and wheat. PMID:14740255
VKCDB: voltage-gated potassium channel database. PMID:14715090
ANTIMIC: a database of antimicrobial sequences. PMID:14681487
Hembase: browser and genome portal for hematology and erythroid biology. PMID:14681483
The mouse Gene Expression Database (GXD): updates and enhancements. PMID:14681482
ERGDB: Estrogen Responsive Genes Database. PMID:14681475
The Mouse SAGE Site: database of public mouse SAGE libraries. PMID:14681462
MitoProteome: mitochondrial protein sequence database and annotation system. PMID:14681458
IntAct: an open source molecular interaction database. PMID:14681455
PlantGDB, plant genome database and analysis tools. PMID:14681433
ApiEST-DB: analyzing clustered EST data of the apicomplexan parasites. PMID:14681425
coliBASE: an online database for Escherichia coli, Shigella and Salmonella comparative genomics. PMID:14681417
EASED: Extended Alternatively Spliced EST Database. PMID:14681361
ASD: the Alternative Splicing Database. PMID:14681360
Xpro: database of eukaryotic protein-encoding genes. PMID:14681359
Islander: a database of integrative islands in prokaryotic genomes, the associated integrases and their DNA site specificities. PMID:14681358
ACLAME: a CLAssification of Mobile genetic Elements. PMID:14681355
Database resources of the National Center for Biotechnology Information: update. PMID:14681353
The EMBL Nucleotide Sequence Database. PMID:14681351
GenBank: update. PMID:14681350
AnaBench: a Web/CORBA-based workbench for biomolecular sequence analysis. PMID:14678565
A unique set of 11,008 onion expressed sequence tags reveals expressed sequence and genomic differences between the monocot orders Asparagales and Poales. PMID:14671025
Using electrostatic potentials to predict DNA-binding sites on DNA-binding proteins. PMID:14654694
ArrayTrack--supporting toxicogenomic research at the U.S. Food and Drug Administration National Center for Toxicological Research. PMID:14630514
Regulation of lysine biosynthesis and transport genes in bacteria: yet another RNA riboswitch? PMID:14627808
Genome-wide characterization of the lignification toolbox in Arabidopsis. PMID:14612585
GeneViTo: visualizing gene-product functional and structural features in genomic datasets. PMID:14594459
Exegesis: a procedure to improve gene predictions and its use to find immunoglobulin superfamily proteins in the human and mouse genomes. PMID:14576296
Regulation of the vitamin B12 metabolism and transport in bacteria by a conserved RNA structural element. PMID:12923257
Reinvestigation of the Saccharomyces cerevisiae genome annotation by comparison to the genome of a related fungus: Ashbya gossypii. PMID:12844361
SIRW: A web server for the Simple Indexing and Retrieval System that combines sequence motif searches with keyword searches. PMID:12824415
Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs. PMID:12824383
GeneSeqer@PlantGDB: Gene structure prediction in plant genomes. PMID:12824374
MGAlignIt: A web service for the alignment of mRNA/EST and genomic sequences. PMID:12824360
Integrated databanks access and sequence/structure analysis services at the PBIL. PMID:12824334
Recognition of the 5' leader of pre-tRNA substrates by the active site of ribonuclease P. PMID:12756331
A comparison of Pfam and MEROPS: two databases, one comprehensive, and one specialised. PMID:12740029
Tags:
Tags
More detailed information about this field from each metasource.
sequence analysis
metasource: bio.tools
version: extracted_at: 2022-11-04T11:30:57.636780
mapping
metasource: bio.tools
version: extracted_at: 2022-11-04T11:30:57.636780
literature and language
metasource: bio.tools
version: extracted_at: 2022-11-04T11:30:57.636780
data mining
metasource: bio.tools
version: extracted_at: 2022-11-04T11:30:57.636780
data integration and warehousing
metasource: bio.tools
version: extracted_at: 2022-11-04T11:30:57.636780
rare diseases
metasource: bio.tools
version: extracted_at: 2022-11-04T11:30:57.636780
Tags
More detailed information about this field from each metasource.
sequence analysis
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:30:57.636780
mapping
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:30:57.636780
literature and language
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:30:57.636780
data mining
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:30:57.636780
data integration and warehousing
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:30:57.636780
rare diseases
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:30:57.636780
sequence analysis mapping literature and language data mining data integration and warehousing rare diseases
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