MicrosporidiaDB
MicrosporidiaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.
Description
More detailed information about this field from each metasource.
MicrosporidiaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.
metasource: Fairsharing.orgversion: FAIRsharing.org: MicrosporidiaDB; MicrosporidiaDB; DOI: https://doi.org/10.25504/FAIRsharing.vk0ax6; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Functional Genomic Resource for Microsporidia
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
MicrosporidiaDB belongs to the EuPathDB family of databases and is an integrated genomic and functional genomic database for the phylum Microsporidia. In its first iteration (released in early 2010), MicrosporidiaDB contains the genomes of two Encephalitozoon species (see below). MicrosporidiaDB integrates whole genome sequence and annotation and will rapidly expand to include experimental data and environmental isolate sequences provided by community researchers. The database includes supplemental bioinformatics analyses and a web interface for data-mining.
metasource: re3data.orgversion: re3data.org: MicrosporidiaDB; editing status 2018-12-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3N20C last accessed: 2022-11-04
Webpage:
http://microsporidiadb.org/micro/Webpage
More detailed information about this field from each metasource.
http://microsporidiadb.org/micro/
metasource: Fairsharing.orgversion: FAIRsharing.org: MicrosporidiaDB; MicrosporidiaDB; DOI: https://doi.org/10.25504/FAIRsharing.vk0ax6; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: re3data.org
version: re3data.org: MicrosporidiaDB; editing status 2018-12-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3N20C last accessed: 2022-11-04
http://microsporidiadb.org
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Licence:
Name: Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0Licence name
More detailed information about this field from each metasource.
Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0
metasource: Fairsharing.orgversion: FAIRsharing.org: MicrosporidiaDB; MicrosporidiaDB; DOI: https://doi.org/10.25504/FAIRsharing.vk0ax6; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Copyrights
metasource: re3data.orgversion: re3data.org: MicrosporidiaDB; editing status 2018-12-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3N20C last accessed: 2022-11-04
Licence URL
More detailed information about this field from each metasource.
http://opendatacommons.org/licenses/pddl/1.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: MicrosporidiaDB; MicrosporidiaDB; DOI: https://doi.org/10.25504/FAIRsharing.vk0ax6; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
http://microsporidiadb.org/micro/showXmlDataContent.do?name=XmlQuestions.About
metasource: re3data.orgversion: re3data.org: MicrosporidiaDB; editing status 2018-12-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3N20C last accessed: 2022-11-04
Publications:
Publications
More detailed information about this field from each metasource.
EuPathDB: a portal to eukaryotic pathogen databases
PMID: 19914931
metasource: Fairsharing.org
version: FAIRsharing.org: MicrosporidiaDB; MicrosporidiaDB; DOI: https://doi.org/10.25504/FAIRsharing.vk0ax6; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
http://nar.oxfordjournals.org/content/39/suppl_1/D612
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
EuPathDB: a portal to eukaryotic pathogen databases
PMID: 19914931
metasource: Fairsharing.org
version: FAIRsharing.org: MicrosporidiaDB; MicrosporidiaDB; DOI: https://doi.org/10.25504/FAIRsharing.vk0ax6; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
http://nar.oxfordjournals.org/content/39/suppl_1/D612
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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EuPathDB: a portal to eukaryotic pathogen databases
PubMed citations: 81.
81 articles citing: EuPathDB: a portal to eukaryotic pathogen databases
Paving the Way: Contributions of Big Data to Apicomplexan and Kinetoplastid Research. PMID:35734575
Compilation of parasitic immunogenic proteins from 30 years of published research using machine learning and natural language processing. PMID:35725870
Predicting Protein Therapeutic Candidates for Bovine Babesiosis Using Secondary Structure Properties and Machine Learning. PMID:34367264
Metagenomics: a path to understanding the gut microbiome. PMID:34259891
Applying Machine Learning to Predict the Exportome of Bovine and Canine Babesia Species That Cause Babesiosis. PMID:34071992
Babesia Bovis Ligand-Receptor Interaction: AMA-1 Contains Small Regions Governing Bovine Erythrocyte Binding. PMID:33450807
A Comprehensive Subcellular Atlas of the Toxoplasma Proteome via hyperLOPIT Provides Spatial Context for Protein Functions. PMID:33053376
Novel Babesia bovis exported proteins that modify properties of infected red blood cells. PMID:33017449
Plasmodium Condensin Core Subunits SMC2/SMC4 Mediate Atypical Mitosis and Are Essential for Parasite Proliferation and Transmission. PMID:32049018
ApicoTFdb: the comprehensive web repository of apicomplexan transcription factors and transcription-associated co-factors. PMID:31529106
ChlamBase: a curated model organism database for the Chlamydia research community. PMID:30985891
Plasmodium palmitoylation machinery engineered in E. coli for high-throughput screening of palmitoyl acyl-transferase inhibitors. PMID:30761251
Genetic Diversity and Gene Family Expansions in Members of the Genus Entamoeba. PMID:30668670
Babesia bovis RON2 contains conserved B-cell epitopes that induce an invasion-blocking humoral immune response in immunized cattle. PMID:30390674
A Gene-Based Positive Selection Detection Approach to Identify Vaccine Candidates Using Toxoplasma gondii as a Test Case Protozoan Pathogen. PMID:30177953
Lipid analysis of Eimeria sporozoites reveals exclusive phospholipids, a phylogenetic mosaic of endogenous synthesis, and a host-independent lifestyle. PMID:29844921
Characterization of the Theileria parva sporozoite proteome. PMID:29258832
Extreme genome diversity in the hyper-prevalent parasitic eukaryote Blastocystis. PMID:28892507
A novel lipoate attachment enzyme is shared by Plasmodium and Chlamydia species. PMID:28836704
Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes. PMID:28708996
Genome-wide analysis of gene expression and protein secretion of Babesia canis during virulent infection identifies potential pathogenicity factors. PMID:28611446
Origin and Evolutionary Alteration of the Mitochondrial Import System in Eukaryotic Lineages. PMID:28369657
Protein Bioinformatics Databases and Resources. PMID:28150231
Mitochondrial Genome Sequences and Structures Aid in the Resolution of Piroplasmida phylogeny. PMID:27832128
A review on host-pathogen interactions: classification and prediction. PMID:27470504
Leishmania infantum Asparagine Synthetase A Is Dispensable for Parasites Survival and Infectivity. PMID:26771178
Leishmania donovani Encodes a Functional Selenocysteinyl-tRNA Synthase. PMID:26586914
The nucleosome landscape of Plasmodium falciparum reveals chromatin architecture and dynamics of regulatory sequences. PMID:26578577
Systems analysis of host-parasite interactions. PMID:26306749
Network-based gene prediction for Plasmodium falciparum malaria towards genetics-based drug discovery. PMID:26099491
Databases for Microbiologists. PMID:26013493
A novel Mitosomal β-barrel Outer Membrane Protein in Entamoeba. PMID:25711150
Automated training for algorithms that learn from genomic data. PMID:25695053
The Ordospora colligata genome: Evolution of extreme reduction in microsporidia and host-to-parasite horizontal gene transfer. PMID:25587016
Immunization with the Entamoeba histolytica surface metalloprotease EhMSP-1 protects hamsters from amebic liver abscess. PMID:25452550
Genome wide in silico analysis of Plasmodium falciparum phosphatome. PMID:25425018
The Pathogen-Host Interactions database (PHI-base): additions and future developments. PMID:25414340
The Eukaryotic Pathogen Databases: a functional genomic resource integrating data from human and veterinary parasites. PMID:25388105
A survey of innovation through duplication in the reduced genomes of twelve parasites. PMID:24919110
Cryptosporidium parvum has an active hypusine biosynthesis pathway. PMID:24893338
Identification and functional characterization of a novel bacterial type asparagine synthetase A: a tRNA synthetase paralog from Leishmania donovani. PMID:24610810
Selecting targets from eukaryotic parasites for structural genomics and drug discovery. PMID:24590708
Strategies to discover the structural components of cyst and oocyst walls. PMID:24096907
Identification of a family of four UDP-polypeptide N-acetylgalactosaminyl transferases in Cryptosporidium species. PMID:23954365
Identification and characterization of Cryptosporidium parvum Clec, a novel C-type lectin domain-containing mucin-like glycoprotein. PMID:23817613
Genomic distribution of SINEs in Entamoeba histolytica strains: implication for genotyping. PMID:23815468
Query enhancement through the practical application of ontology: the IEDB and OBI. PMID:23734660
The Enzyme Portal: a case study in applying user-centred design methods in bioinformatics. PMID:23514033
Drug repurposing screen reveals FDA-approved inhibitors of human HMG-CoA reductase and isoprenoid synthesis that block Cryptosporidium parvum growth. PMID:23380723
Global biogeography of highly diverse protistan communities in soil. PMID:23235291
Library of Apicomplexan Metabolic Pathways: a manually curated database for metabolic pathways of apicomplexan parasites. PMID:23193253
EuPathDB: the eukaryotic pathogen database. PMID:23175615
SchistoDB: an updated genome resource for the three key schistosomes of humans. PMID:23161692
Unusual domain architecture of aminoacyl tRNA synthetases and their paralogs from Leishmania major. PMID:23151081
Parasites, proteomes and systems: has Descartes' clock run out of time? PMID:22828391
Kinetic and phylogenetic analysis of plant polyamine uptake transporters. PMID:22711282
The immune epitope database: a historical retrospective of the first decade. PMID:22681406
The Ontology for Parasite Lifecycle (OPL): towards a consistent vocabulary of lifecycle stages in parasitic organisms. PMID:22621763
ApicoAP: the first computational model for identifying apicoplast-targeted proteins in multiple species of Apicomplexa. PMID:22574192
Toxoplasma on the brain: understanding host-pathogen interactions in chronic CNS infection. PMID:22545203
Control of Entamoeba histolytica adherence involves metallosurface protease 1, an M8 family surface metalloprotease with homology to leishmanolysin. PMID:22451519
SpiroESTdb: a transcriptome database and online tool for sparganum expressed sequences tags. PMID:22397686
A semantic problem solving environment for integrative parasite research: identification of intervention targets for Trypanosoma cruzi. PMID:22272365
VectorBase: improvements to a bioinformatics resource for invertebrate vector genomics. PMID:22135296
TDR Targets: a chemogenomics resource for neglected diseases. PMID:22116064
FungiDB: an integrated functional genomics database for fungi. PMID:22064857
Structural and evolutionary divergence of eukaryotic protein kinases in Apicomplexa. PMID:22047078
Schistosoma comparative genomics: integrating genome structure, parasite biology and anthelmintic discovery. PMID:22024648
Multiple independent fusions of glucose-6-phosphate dehydrogenase with enzymes in the pentose phosphate pathway. PMID:21829610
Host-Parasite interactions in Entamoeba histolytica and Entamoeba dispar: what have we learned from their genomes? PMID:21810102
The Strategies WDK: a graphical search interface and web development kit for functional genomics databases. PMID:21705364
Integrating diverse databases into an unified analysis framework: a Galaxy approach. PMID:21531983
A systems biological view of intracellular pathogens. PMID:21349090
A Sequential Model of Host Cell Killing and Phagocytosis by Entamoeba histolytica. PMID:21331284
David Roos. Interview by H. Craig Mak. PMID:21301442
Reverse vaccinology: developing vaccines in the era of genomics. PMID:21029963
AmoebaDB and MicrosporidiaDB: functional genomic resources for Amoebozoa and Microsporidia species. PMID:20974635
The antiretroviral lectin cyanovirin-N targets well-known and novel targets on the surface of Entamoeba histolytica trophozoites. PMID:20852023
Plant-type trehalose synthetic pathway in cryptosporidium and some other apicomplexans. PMID:20830297
Chromosome sequence maps of the Giardia lamblia assemblage A isolate WB. PMID:20739222
Genomic information infrastructure after the deluge. PMID:20670392 - http://nar.oxfordjournals.org/content/39/suppl_1/D612
Tags:
Tags
More detailed information about this field from each metasource.
genome
metasource: Fairsharing.org
version: FAIRsharing.org: MicrosporidiaDB; MicrosporidiaDB; DOI: https://doi.org/10.25504/FAIRsharing.vk0ax6; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
pathogen
metasource: Fairsharing.org
version: FAIRsharing.org: MicrosporidiaDB; MicrosporidiaDB; DOI: https://doi.org/10.25504/FAIRsharing.vk0ax6; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
genomics databases (non-vertebrate)
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
unicellular eukaryotes genome databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
chip sequencing
metasource: re3data.org
version: re3data.org: MicrosporidiaDB; editing status 2018-12-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3N20C last accessed: 2022-11-04
dna
metasource: re3data.org
version: re3data.org: MicrosporidiaDB; editing status 2018-12-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3N20C last accessed: 2022-11-04
fair
metasource: re3data.org
version: re3data.org: MicrosporidiaDB; editing status 2018-12-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3N20C last accessed: 2022-11-04
rna
metasource: re3data.org
version: re3data.org: MicrosporidiaDB; editing status 2018-12-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3N20C last accessed: 2022-11-04
genetics
metasource: re3data.org
version: re3data.org: MicrosporidiaDB; editing status 2018-12-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3N20C last accessed: 2022-11-04
microarray
metasource: re3data.org
version: re3data.org: MicrosporidiaDB; editing status 2018-12-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3N20C last accessed: 2022-11-04
proteomics
metasource: re3data.org
version: re3data.org: MicrosporidiaDB; editing status 2018-12-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3N20C last accessed: 2022-11-04
Tags
More detailed information about this field from each metasource.
genome
metasource: Fairsharing.orgversion: FAIRsharing.org: MicrosporidiaDB; MicrosporidiaDB; DOI: https://doi.org/10.25504/FAIRsharing.vk0ax6; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
pathogen
metasource: Fairsharing.orgversion: FAIRsharing.org: MicrosporidiaDB; MicrosporidiaDB; DOI: https://doi.org/10.25504/FAIRsharing.vk0ax6; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
genomics databases (non-vertebrate)
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
unicellular eukaryotes genome databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
chip sequencing
metasource: re3data.orgversion: re3data.org: MicrosporidiaDB; editing status 2018-12-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3N20C last accessed: 2022-11-04
dna
metasource: re3data.orgversion: re3data.org: MicrosporidiaDB; editing status 2018-12-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3N20C last accessed: 2022-11-04
fair
metasource: re3data.orgversion: re3data.org: MicrosporidiaDB; editing status 2018-12-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3N20C last accessed: 2022-11-04
rna
metasource: re3data.orgversion: re3data.org: MicrosporidiaDB; editing status 2018-12-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3N20C last accessed: 2022-11-04
genetics
metasource: re3data.orgversion: re3data.org: MicrosporidiaDB; editing status 2018-12-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3N20C last accessed: 2022-11-04
microarray
metasource: re3data.orgversion: re3data.org: MicrosporidiaDB; editing status 2018-12-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3N20C last accessed: 2022-11-04
proteomics
metasource: re3data.orgversion: re3data.org: MicrosporidiaDB; editing status 2018-12-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3N20C last accessed: 2022-11-04
genome pathogen genomics unicellular eukaryotes genome chip sequencing dna rna genetics microarray proteomics
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