Chicken Variation Database
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Chicken Variation Database
metasource: Fairsharing.org
version: FAIRsharing.org: ChickVD; Chicken Variation Database; DOI: https://doi.org/10.25504/FAIRsharing.d4q4g2; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
ChickVD
metasource: Fairsharing.org
version: FAIRsharing.org: ChickVD; Chicken Variation Database; DOI: https://doi.org/10.25504/FAIRsharing.d4q4g2; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Names
More detailed information about this field from each metasource.
Chicken Variation Database
metasource: Fairsharing.orgversion: FAIRsharing.org: ChickVD; Chicken Variation Database; DOI: https://doi.org/10.25504/FAIRsharing.d4q4g2; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
ChickVD
metasource: Fairsharing.orgversion: FAIRsharing.org: ChickVD; Chicken Variation Database; DOI: https://doi.org/10.25504/FAIRsharing.d4q4g2; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Names
More detailed information about this field from each metasource.
Chicken Variation Database
metasource: Fairsharing.orgversion: FAIRsharing.org: ChickVD; Chicken Variation Database; DOI: https://doi.org/10.25504/FAIRsharing.d4q4g2; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
ChickVD
metasource: Fairsharing.orgversion: FAIRsharing.org: ChickVD; Chicken Variation Database; DOI: https://doi.org/10.25504/FAIRsharing.d4q4g2; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
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The chicken Variation Database (ChickVD) is an integrated information system for storage, retrieval, visualization and analysis of chicken variation data.
Description
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The chicken Variation Database (ChickVD) is an integrated information system for storage, retrieval, visualization and analysis of chicken variation data.
metasource: Fairsharing.orgversion: FAIRsharing.org: ChickVD; Chicken Variation Database; DOI: https://doi.org/10.25504/FAIRsharing.d4q4g2; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Working in parallel with the efforts to sequence the chicken (Gallus gallus) genome, the Beijing Genomics Institute led an international team of scientists from China, USA, UK, Sweden, Netherlands and Germany to map extensive DNA sequence variation throughout the chicken genome by sampling DNA from domestic breeds. Using the Red Jungle Fowl genome sequence as a reference, we identified 3.1 million non-redundant DNA sequence variants. To facilitate the application of our data to avian genetics and to provide a foundation for functional and evolutionary studies, we created the .Chicken Variation Database. (ChickVD). A graphical MapView shows variants mapped onto the chicken genome in the context of gene annotations and other features, including genetic markers, trait loci, cDNAs, chicken orthologs of human disease genes and raw sequence traces. ChickVD also stores information on quantitative trait loci (QTL) using data from collaborating institutions and public resources. Our data can be queried by search engine and homology-based BLAST searches.
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Webpage:
http://chicken.genomics.org.cnWebpage
More detailed information about this field from each metasource.
http://chicken.genomics.org.cn
metasource: Fairsharing.orgversion: FAIRsharing.org: ChickVD; Chicken Variation Database; DOI: https://doi.org/10.25504/FAIRsharing.d4q4g2; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
http://chicken.genomics.org.cn/
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Publications:
Publications
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ChickVD: a sequence variation database for the chicken genome
PMID: 15608233
metasource: Fairsharing.org
version: FAIRsharing.org: ChickVD; Chicken Variation Database; DOI: https://doi.org/10.25504/FAIRsharing.d4q4g2; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Publications
More detailed information about this field from each metasource.
ChickVD: a sequence variation database for the chicken genome
PMID: 15608233
metasource: Fairsharing.org
version: FAIRsharing.org: ChickVD; Chicken Variation Database; DOI: https://doi.org/10.25504/FAIRsharing.d4q4g2; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
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ChickVD: a sequence variation database for the chicken genome
PubMed citations: 16.
16 articles citing: ChickVD: a sequence variation database for the chicken genome
The Genetic Architecture of Domestication in Animals. PMID:26512200
Integrating transcriptome and genome re-sequencing data to identify key genes and mutations affecting chicken eggshell qualities. PMID:25974068
Case study of sequence capture enrichment technology: identification of variation underpinning developmental syndromes in an amniote model. PMID:24704915
Genome-wide patterns of genetic variation in two domestic chickens. PMID:23814129
Current status and future perspectives for sequencing livestock genomes. PMID:22958500
Online resources for genomic structural variation. PMID:22228017
Genetic effects of polymorphisms in candidate genes and the QTL region on chicken age at first egg. PMID:21492484
Identification and association of the single nucleotide polymorphisms in calpain3 (CAPN3) gene with carcass traits in chickens. PMID:19265533
MyBASE: a database for genome polymorphism and gene function studies of Mycobacterium. PMID:19228437
Bioinformatics in China: a personal perspective. PMID:18437216
Nonparametric methods for incorporating genomic information into genetic evaluations: an application to mortality in broilers. PMID:18430951
MethyCancer: the database of human DNA methylation and cancer. PMID:17890243
Snap: an integrated SNP annotation platform. PMID:17135198
PigGIS: Pig Genomic Informatics System. PMID:17090590
Influenza Virus Database (IVDB): an integrated information resource and analysis platform for influenza virus research. PMID:17065465
A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms. PMID:15592405
Tags:
Tags
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deoxyribonucleic acid
metasource: Fairsharing.org
version: FAIRsharing.org: ChickVD; Chicken Variation Database; DOI: https://doi.org/10.25504/FAIRsharing.d4q4g2; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
genetic polymorphism
metasource: Fairsharing.org
version: FAIRsharing.org: ChickVD; Chicken Variation Database; DOI: https://doi.org/10.25504/FAIRsharing.d4q4g2; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
genome
metasource: Fairsharing.org
version: FAIRsharing.org: ChickVD; Chicken Variation Database; DOI: https://doi.org/10.25504/FAIRsharing.d4q4g2; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
single nucleotide polymorphism
metasource: Fairsharing.org
version: FAIRsharing.org: ChickVD; Chicken Variation Database; DOI: https://doi.org/10.25504/FAIRsharing.d4q4g2; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
human and other vertebrate genomes
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
model organisms, comparative genomics
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Tags
More detailed information about this field from each metasource.
deoxyribonucleic acid
metasource: Fairsharing.orgversion: FAIRsharing.org: ChickVD; Chicken Variation Database; DOI: https://doi.org/10.25504/FAIRsharing.d4q4g2; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
genetic polymorphism
metasource: Fairsharing.orgversion: FAIRsharing.org: ChickVD; Chicken Variation Database; DOI: https://doi.org/10.25504/FAIRsharing.d4q4g2; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
genome
metasource: Fairsharing.orgversion: FAIRsharing.org: ChickVD; Chicken Variation Database; DOI: https://doi.org/10.25504/FAIRsharing.d4q4g2; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
single nucleotide polymorphism
metasource: Fairsharing.orgversion: FAIRsharing.org: ChickVD; Chicken Variation Database; DOI: https://doi.org/10.25504/FAIRsharing.d4q4g2; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
human and other vertebrate genomes
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
model organisms, comparative genomics
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
dna polymorphism genome single nucleotide polymorphism human and other vertebrate genomes model organisms
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