CellFinder
CellFinder maps validated gene and protein expression, phenotype and images related to cell types.The data allow characterization and comparison of cell types and can be browsed by using the body browser and by searching for cells or genes. All cells are related to more complex systems such as tissues, organs and organisms and arranged according to their position in development. CellFinder provides long-term data storage for validated and curated primary research data and provides additional expert-validation through relevant information extracted from text.
Description
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CellFinder maps validated gene and protein expression, phenotype and images related to cell types.The data allow characterization and comparison of cell types and can be browsed by using the body browser and by searching for cells or genes. All cells are related to more complex systems such as tissues, organs and organisms and arranged according to their position in development. CellFinder provides long-term data storage for validated and curated primary research data and provides additional expert-validation through relevant information extracted from text.
metasource: Fairsharing.orgversion: FAIRsharing.org: CellFinder; CellFinder; DOI: https://doi.org/10.25504/FAIRsharing.mt6057; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Gene and protein expression, phenotype and images mapped to the cell types
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Webpage:
http://cellfinder.org/Webpage
More detailed information about this field from each metasource.
http://cellfinder.org/
metasource: Fairsharing.orgversion: FAIRsharing.org: CellFinder; CellFinder; DOI: https://doi.org/10.25504/FAIRsharing.mt6057; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
http://www.cellfinder.org/
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Licence:
Name: Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)Licence name
More detailed information about this field from each metasource.
Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)
metasource: Fairsharing.orgversion: FAIRsharing.org: CellFinder; CellFinder; DOI: https://doi.org/10.25504/FAIRsharing.mt6057; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Licence URL
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https://creativecommons.org/licenses/by-nc-sa/4.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: CellFinder; CellFinder; DOI: https://doi.org/10.25504/FAIRsharing.mt6057; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
CellFinder: a cell data repository
PMID: 24304896
metasource: Fairsharing.org
version: FAIRsharing.org: CellFinder; CellFinder; DOI: https://doi.org/10.25504/FAIRsharing.mt6057; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Preliminary evaluation of the CellFinder literature curation pipeline for gene expression in kidney cells and anatomical parts
PMID: 23599415
metasource: Fairsharing.org
version: FAIRsharing.org: CellFinder; CellFinder; DOI: https://doi.org/10.25504/FAIRsharing.mt6057; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Semantic Body Browser: graphical exploration of an organism and spatially resolved expression data visualization
PMID: 25344497
metasource: Fairsharing.org
version: FAIRsharing.org: CellFinder; CellFinder; DOI: https://doi.org/10.25504/FAIRsharing.mt6057; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
http://dx.doi.org/10.1093/nar/gkt1264
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
CellFinder: a cell data repository
PMID: 24304896
metasource: Fairsharing.org
version: FAIRsharing.org: CellFinder; CellFinder; DOI: https://doi.org/10.25504/FAIRsharing.mt6057; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Preliminary evaluation of the CellFinder literature curation pipeline for gene expression in kidney cells and anatomical parts
PMID: 23599415
metasource: Fairsharing.org
version: FAIRsharing.org: CellFinder; CellFinder; DOI: https://doi.org/10.25504/FAIRsharing.mt6057; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Semantic Body Browser: graphical exploration of an organism and spatially resolved expression data visualization
PMID: 25344497
metasource: Fairsharing.org
version: FAIRsharing.org: CellFinder; CellFinder; DOI: https://doi.org/10.25504/FAIRsharing.mt6057; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
http://dx.doi.org/10.1093/nar/gkt1264
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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CellFinder: a cell data repository
PubMed citations: 16.
16 articles citing: CellFinder: a cell data repository
Cellular Aquaculture: Prospects and Challenges. PMID:35744442
CellMeSH: Probabilistic Cell-Type Identification Using Indexed Literature. PMID:34893819
Using Cell Type-Specific Genes to Identify Cell-Type Transitions Between Different in vitro Culture Conditions. PMID:34249906
Processing and Analysis of RNA-seq Data from Public Resources. PMID:33606253
Single-cell transcriptomics: a novel precision medicine technique in nephrology. PMID:33076636
Human Cell Atlas and cell-type authentication for regenerative medicine. PMID:32929224
Therapeutic Complement Targeting in ANCA-Associated Vasculitides and Thrombotic Microangiopathy. PMID:31988889
Detection of condition-specific marker genes from RNA-seq data with MGFR. PMID:31179178
Toward mapping the human body at a cellular resolution. PMID:30058989
The Cellosaurus, a Cell-Line Knowledge Resource. PMID:29805321
Unifying cancer and normal RNA sequencing data from different sources. PMID:29664468
Genomic and molecular control of cell type and cell type conversions. PMID:29348912
Usage of cell nomenclature in biomedical literature. PMID:29322912
hPSCreg--the human pluripotent stem cell registry. PMID:26400179
MGFM: a novel tool for detection of tissue and cell specific marker genes from microarray gene expression data. PMID:26314578
Regulatory insight into the European human pluripotent stem cell registry. PMID:25457963 -
Preliminary evaluation of the CellFinder literature curation pipeline for gene expression in kidney cells and anatomical parts
PubMed citations: 11.
11 articles citing: Preliminary evaluation of the CellFinder literature curation pipeline for gene expression in kidney cells and anatomical parts
An extensive review of tools for manual annotation of documents. PMID:31838514
A context-based ABC model for literature-based discovery. PMID:31017923
Usage of cell nomenclature in biomedical literature. PMID:29322912
Differential gene expression in disease: a comparison between high-throughput studies and the literature. PMID:29020950
An integrated text mining framework for metabolic interaction network reconstruction. PMID:27019783
TEES 2.2: Biomedical Event Extraction for Diverse Corpora. PMID:26551925
Cell line name recognition in support of the identification of synthetic lethality in cancer from text. PMID:26428294
An analysis on the entity annotations in biological corpora. PMID:25254099
Applying MetaMap to Medline for identifying novel associations in a large clinical dataset: a feasibility analysis. PMID:24928177
Alkemio: association of chemicals with biomedical topics by text and data mining. PMID:24838570
CellFinder: a cell data repository. PMID:24304896 -
Semantic Body Browser: graphical exploration of an organism and spatially resolved expression data visualization
PubMed citations: 1.
1 articles citing: Semantic Body Browser: graphical exploration of an organism and spatially resolved expression data visualization
MyGeneFriends: A Social Network Linking Genes, Genetic Diseases, and Researchers. PMID:28623182 - http://dx.doi.org/10.1093/nar/gkt1264
Tags:
Tags
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cell
metasource: Fairsharing.org
version: FAIRsharing.org: CellFinder; CellFinder; DOI: https://doi.org/10.25504/FAIRsharing.mt6057; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
curated information
metasource: Fairsharing.org
version: FAIRsharing.org: CellFinder; CellFinder; DOI: https://doi.org/10.25504/FAIRsharing.mt6057; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
gene expression data
metasource: Fairsharing.org
version: FAIRsharing.org: CellFinder; CellFinder; DOI: https://doi.org/10.25504/FAIRsharing.mt6057; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
image
metasource: Fairsharing.org
version: FAIRsharing.org: CellFinder; CellFinder; DOI: https://doi.org/10.25504/FAIRsharing.mt6057; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
phenotype
metasource: Fairsharing.org
version: FAIRsharing.org: CellFinder; CellFinder; DOI: https://doi.org/10.25504/FAIRsharing.mt6057; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
other molecular biology databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Tags
More detailed information about this field from each metasource.
cell
metasource: Fairsharing.orgversion: FAIRsharing.org: CellFinder; CellFinder; DOI: https://doi.org/10.25504/FAIRsharing.mt6057; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
curated information
metasource: Fairsharing.orgversion: FAIRsharing.org: CellFinder; CellFinder; DOI: https://doi.org/10.25504/FAIRsharing.mt6057; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
gene expression data
metasource: Fairsharing.orgversion: FAIRsharing.org: CellFinder; CellFinder; DOI: https://doi.org/10.25504/FAIRsharing.mt6057; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
image
metasource: Fairsharing.orgversion: FAIRsharing.org: CellFinder; CellFinder; DOI: https://doi.org/10.25504/FAIRsharing.mt6057; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
phenotype
metasource: Fairsharing.orgversion: FAIRsharing.org: CellFinder; CellFinder; DOI: https://doi.org/10.25504/FAIRsharing.mt6057; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
other molecular biology databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
cell gene expression phenotype molecular biology
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