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GenDiS

Genomic distribution of protein structural superfamilies

Description

More detailed information about this field from each metasource.

Genomic distribution of protein structural superfamilies

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

Webpage:

http://caps.ncbs.res.in/gendis/home.html

Webpage

More detailed information about this field from each metasource.

http://caps.ncbs.res.in/gendis/home.html

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

Tags:

Tags
More detailed information about this field from each metasource.

genomics databases (non-vertebrate)
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

general genomics databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

genomics general genomics

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MegaMotifbase

Structural motifs in protein families and superfamilies

LenVarDB

Database of length variantion in protein domains

CoGenT++

Complete Genome Tracking database

TransportDB

Sequences and classification of predicted membrane transporters encoded in complete genomes

GeneNest

Gene indices of human, mouse, zebrafish, Arabidopsis, and Drosophila

CAMERA

Community Cyberinfrastructure for Advanced Microbial Ecology Research and Analysis of metagenomic data

Narcisse

Conserved syntenies for various animal, plant and bacterial genomes

EBI Genomes

EBI's collection of databases for the analysis of complete and unfinished viral, pro- and eukaryotic genomes

Entrez Genomes

NCBI's collection of databases for the analysis of complete and unfinished viral, pro- and eukaryotic genomes

DSDBASE

DSDBASE is a database of disulphide bonds in proteins that provides information on native disulphides and those that are stereochemically possible between pairs of residues for all known protein struc ...

PASS2

PASS2 contains alignments of structural motifs of protein superfamilies. PASS2 is an automatic version of the original superfamily alignment database, CAMPASS (CAMbridge database of Protein Alignments ...

SMoS.2: Update of database of Structural Motifs in Superfamilies

Remote homology detection, namely the accumulation of reliable but distantly related sequences of a protein family, remains a challenging problem in biology. Early realisation of such relationships ca ...

PartiGeneDB

Assembled partial genomes for ~250 eukaryotic organisms

IMOTdb

Structural motifs are central to the integrity of the fold and require careful analysis for their identification. IMOTdb is a repertoire of spatially interacting motifs in single protein structures as ...

EcRBPome

Comprehensive database of Escherichia coli RNA-binding proteins (RBPs). This database documents RBPs identified by genome-wide survey of all known complete E. coli proteomes. EcRBPome also presents a ...

GtRDB - Genomic tRNA Database

This genomic tRNA database contains tRNA identifications made by the program tRNAscan-SE (Lowe & Eddy, Nucl Acids Res 25: 955-964, 1997) on complete or nearly complete genomes. Unless otherwise noted, ...

KaryotypeDB

The Karyotype database (KaryotypeDB) contains karyotype and chromosome information like chromosome number, length, karyotype features, idiograms, physical localizations of DNA sequences by fluorescenc ...

3DSwap: Database of Proteins involved in 3D domain Swapping

Protein oligomerization is a key biochemical step to perform the designated function of proteins. 3D domain swapping is a unique protein oligomerization phenomenon observed in a wide array of proteins ...

Sequence-Structural Templates of Single-member Superfamilies

SSToSS is a database which provides sequence-structural templates of single member protein domain superfamilies like PASS2. Sequence-structural templates are recognized by considering the content and ...

STIFDB2

Various genes get upregulated in plants during adverse environmental conditions, which alter the metabolic functions to mitigate the stress effects for adaptation. Therefore, it is important to know t ...

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Data is amalgamated and only retrieved periodically.
Some of the resources used by the system:

® FAIRsharing.org
® Bioontology/Bioportal Terms
® Nucleic Acid Research - Database
® re3data.org
® bio.tools
® PubMed - Courtesy of the U.S. National Library of Medicine