TISSUES
Names
More detailed information about this field from each metasource.
TISSUES
metasource: Fairsharing.org
version: FAIRsharing.org: TISSUES; TISSUES; DOI: https://doi.org/10.25504/FAIRsharing.yXPvpU; Last edited: Jan. 29, 2020, 10:33 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:51.296176
tissues
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:51.296176
Names
More detailed information about this field from each metasource.
TISSUES
metasource: Fairsharing.orgversion: FAIRsharing.org: TISSUES; TISSUES; DOI: https://doi.org/10.25504/FAIRsharing.yXPvpU; Last edited: Jan. 29, 2020, 10:33 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:51.296176
tissues
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:51.296176
Names
More detailed information about this field from each metasource.
TISSUES
metasource: Fairsharing.orgversion: FAIRsharing.org: TISSUES; TISSUES; DOI: https://doi.org/10.25504/FAIRsharing.yXPvpU; Last edited: Jan. 29, 2020, 10:33 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:51.296176
tissues
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:51.296176
TISSUES is a weekly updated web resource that integrates evidence on tissue expression from manually curated literature, proteomics and transcriptomics screens, and automatic text mining. All evidence to common protein identifiers and Brenda Tissue Ontology terms is mapped, and confidence scores that facilitate comparison of the different types and sources of evidence are assigned. These scores are visualized on a schematic human body to provide a convenient overview.
Description
More detailed information about this field from each metasource.
TISSUES is a weekly updated web resource that integrates evidence on tissue expression from manually curated literature, proteomics and transcriptomics screens, and automatic text mining. All evidence to common protein identifiers and Brenda Tissue Ontology terms is mapped, and confidence scores that facilitate comparison of the different types and sources of evidence are assigned. These scores are visualized on a schematic human body to provide a convenient overview.
metasource: Fairsharing.orgversion: FAIRsharing.org: TISSUES; TISSUES; DOI: https://doi.org/10.25504/FAIRsharing.yXPvpU; Last edited: Jan. 29, 2020, 10:33 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
TISSUES is a weekly updated web resource that integrates evidence on tissue expression from manually curated literature, proteomics and transcriptomics screens, and automatic text mining. We map all evidence to common protein identifiers and Brenda Tissue Ontology terms, and further unify it by assigning confidence scores that facilitate comparison of the different types and sources of evidence. We finally visualize these scores on a schematic human body to provide a convenient overview.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:51.296176
Webpage:
https://tissues.jensenlab.org/Webpage
More detailed information about this field from each metasource.
https://tissues.jensenlab.org/
metasource: Fairsharing.orgversion: FAIRsharing.org: TISSUES; TISSUES; DOI: https://doi.org/10.25504/FAIRsharing.yXPvpU; Last edited: Jan. 29, 2020, 10:33 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:51.296176
Licence:
Name: Creative Commons Attribution 4.0 International (CC BY 4.0)Licence name
More detailed information about this field from each metasource.
Creative Commons Attribution 4.0 International (CC BY 4.0)
metasource: Fairsharing.orgversion: FAIRsharing.org: TISSUES; TISSUES; DOI: https://doi.org/10.25504/FAIRsharing.yXPvpU; Last edited: Jan. 29, 2020, 10:33 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
CC-BY-4.0
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:51.296176
Licence URL
More detailed information about this field from each metasource.
https://creativecommons.org/licenses/by/4.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: TISSUES; TISSUES; DOI: https://doi.org/10.25504/FAIRsharing.yXPvpU; Last edited: Jan. 29, 2020, 10:33 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
TISSUES 2.0: an integrative web resource on mammalian tissue expression
PMID: 29617745
metasource: Fairsharing.org
version: FAIRsharing.org: TISSUES; TISSUES; DOI: https://doi.org/10.25504/FAIRsharing.yXPvpU; Last edited: Jan. 29, 2020, 10:33 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
Comprehensive comparison of large-scale tissue expression datasets
PMID: 26157623
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:51.296176
Publications
More detailed information about this field from each metasource.
TISSUES 2.0: an integrative web resource on mammalian tissue expression
PMID: 29617745
metasource: Fairsharing.org
version: FAIRsharing.org: TISSUES; TISSUES; DOI: https://doi.org/10.25504/FAIRsharing.yXPvpU; Last edited: Jan. 29, 2020, 10:33 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
Comprehensive comparison of large-scale tissue expression datasets
PMID: 26157623
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:51.296176
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TISSUES 2.0: an integrative web resource on mammalian tissue expression
PubMed citations: 55.
55 articles citing: TISSUES 2.0: an integrative web resource on mammalian tissue expression
Interaction of Colchicine-Site Ligands With the Blood Cell-Specific Isotype of β-Tubulin-Notable Affinity for Benzimidazoles. PMID:35712668
Identification of HOX signatures contributing to oral cancer phenotype. PMID:35710803
Alteration of circulating platelet-related and diabetes-related microRNAs in individuals with type 2 diabetes mellitus: a stepwise hypoglycaemic clamp study. PMID:35596173
Chronic rhinosinusitis is associated with increased risk of COVID-19 hospitalization. PMID:35576660
Dominant transcript expression profiles of human protein-coding genes interrogated with GTEx dataset. PMID:35484179
Autoimmune Encephalitis in COVID-19 Infection: Our Experience and Systematic Review of the Literature. PMID:35453524
Transcriptomics of Parental Care in the Hypothalamic-Septal Region of Female Zebra Finch Brain. PMID:35269661
A Computational Text Mining-Guided Meta-Analysis Approach to Identify Potential Xerostomia Drug Targets. PMID:35268532
Altered Circulating MicroRNA Profiles After Endurance Training: A Cohort Study of Ultramarathon Runners. PMID:35145424
In silico prediction of HIV-1-host molecular interactions and their directionality. PMID:35134057
Neuroinflammation in Severe Acute Respiratory Syndrome Coronavirus-2 (SARS-CoV-2) infection: Pathogenesis and clinical manifestations. PMID:35074661
Robust normalization and transformation techniques for constructing gene coexpression networks from RNA-seq data. PMID:34980209
Peripheral innate and adaptive immune cells during COVID-19: Functional neutrophils, pro-inflammatory monocytes, and half-dead lymphocytes. PMID:34846101
Central nervous system as a target of novel coronavirus infections: Potential routes of entry and pathogenic mechanisms. PMID:34840148
A Comprehensive Review about the Molecular Structure of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2): Insights into Natural Products against COVID-19. PMID:34834174
High PGD2 receptor 2 levels are associated with poor prognosis in colorectal cancer patients and induce VEGF expression in colon cancer cells and migration in a zebrafish xenograft model. PMID:34750492
Recent updates on immunological, pharmacological, and alternative approaches to combat COVID-19. PMID:34331179
Associations of GWAS-Supported Non-MHC Genes with Autoimmune Thyroiditis in Patients with Type 1 Diabetes. PMID:34234497
Protein structure-based gene expression signatures. PMID:33941686
MicroRNAs in amniotic fluid and maternal blood plasma associated with sex determination and early gonad differentiation in cattle†. PMID:33889937
Severe COVID-19 Infection Associated with Endothelial Dysfunction Induces Multiple Organ Dysfunction: A Review of Therapeutic Interventions. PMID:33801921
Immune dysregulation and system pathology in COVID-19. PMID:33757410
FAM19A (TAFA): An Emerging Family of Neurokines with Diverse Functions in the Central and Peripheral Nervous System. PMID:33621067
Human pathways in animal models: possibilities and limitations. PMID:33524155
The human O-GlcNAcome database and meta-analysis. PMID:33479245
Cellinker: a platform of ligand-receptor interactions for intercellular communication analysis. PMID:33471060
Pain as clinical manifestations of COVID-19 infection and its management in the pandemic era: a literature review. PMID:33390724
Coronavirus genomes carry the signatures of their habitats. PMID:33351847
2-Pyridone natural products as inhibitors of SARS-CoV-2 main protease. PMID:33278462
ACE2 Interaction Networks in COVID-19: A Physiological Framework for Prediction of Outcome in Patients with Cardiovascular Risk Factors. PMID:33233425
Severe acute respiratory syndrome coronavirus 2 infection reaches the human nervous system: How? PMID:33217763
SARS-CoV-2 and nervous system: From pathogenesis to clinical manifestation. PMID:33212316
Emerging Neurological and Psychobiological Aspects of COVID-19 Infection. PMID:33198412
TCRD and Pharos 2021: mining the human proteome for disease biology. PMID:33156327
The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals. PMID:33037820
Inflammation Triggered by SARS-CoV-2 and ACE2 Augment Drives Multiple Organ Failure of Severe COVID-19: Molecular Mechanisms and Implications. PMID:33029758
Effects of Antimalarial Drugs on Neuroinflammation-Potential Use for Treatment of COVID-19-Related Neurologic Complications. PMID:32897518
Call to Action: SARS-CoV-2 and CerebrovAscular DisordErs (CASCADE). PMID:32807412
Neuroinvasive potential of a primary respiratory pathogen SARS- CoV2: Summarizing the evidences. PMID:32640417
Human iPSC-derived alveolar and airway epithelial cells can be cultured at air-liquid interface and express SARS-CoV-2 host factors. PMID:32577635
Elucidation of cellular targets and exploitation of the receptor-binding domain of SARS-CoV-2 for vaccine and monoclonal antibody synthesis. PMID:32573788
Neurological manifestations of COVID-19 and other coronavirus infections: A systematic review. PMID:32422545
Neurology during the pandemic. Is COVID-19 changing the organisation of Neurology Departments? PMID:32364118
Evidence of the COVID-19 Virus Targeting the CNS: Tissue Distribution, Host-Virus Interaction, and Proposed Neurotropic Mechanisms. PMID:32167747
Enabling semantic queries across federated bioinformatics databases. PMID:31697362
iFunMed: Integrative functional mediation analysis of GWAS and eQTL studies. PMID:31328826
Factors impacting technical success rate of image-guided intra-arterial therapy in rat orthotopic liver tumor model. PMID:31312386
Epimutations in Developmental Genes Underlie the Onset of Domestication in Farmed European Sea Bass. PMID:31289822
CoCoScore: context-aware co-occurrence scoring for text mining applications using distant supervision. PMID:31199464
The Promoter Regions of Intellectual Disability-Associated Genes Are Uniquely Enriched in LTR Sequences of the MER41 Primate-Specific Endogenous Retrovirus: An Evolutionary Connection Between Immunity and Cognition. PMID:31031802
Kti12, a PSTK-like tRNA dependent ATPase essential for tRNA modification by Elongator. PMID:30916349
Design, implementation, and operation of a rapid, robust named entity recognition web service. PMID:30850898
STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets. PMID:30476243
Cytoscape StringApp: Network Analysis and Visualization of Proteomics Data. PMID:30450911
Viruses.STRING: A Virus-Host Protein-Protein Interaction Database. PMID:30249048 -
Comprehensive comparison of large-scale tissue expression datasets
PubMed citations: 43.
43 articles citing: Comprehensive comparison of large-scale tissue expression datasets
Large-Scale Multi-Omics Studies Provide New Insights into Blood Pressure Regulation. PMID:35886906
High-quality reference genome of Fasciola gigantica: Insights into the genomic signatures of transposon-mediated evolution and specific parasitic adaption in tropical regions. PMID:34610021
MicroRNAs for Virus Pathogenicity and Host Responses, Identified in SARS-CoV-2 Genomes, May Play Roles in Viral-Host Co-Evolution in Putative Zoonotic Host Species. PMID:33467206
Loss of the fragile X syndrome protein FMRP results in misregulation of nonsense-mediated mRNA decay. PMID:33420492
Informatics Inference of Exercise-Induced Modulation of Brain Pathways Based on Cerebrospinal Fluid Micro-RNAs in Myalgic Encephalomyelitis/Chronic Fatigue Syndrome. PMID:33274349
Three Signatures of Adaptive Polymorphism Exemplified by Malaria-Associated Genes. PMID:33185667
Dynamics of a Protein Interaction Network Associated to the Aggregation of polyQ-Expanded Ataxin-1. PMID:32992839
Genomic Signatures of Coevolution between Nonmodel Mammals and Parasitic Roundworms. PMID:32960966
Combination Treatment with GSK126 and Pomalidomide Induces B-Cell Differentiation in EZH2 Gain-of-Function Mutant Diffuse Large B-Cell Lymphoma. PMID:32906688
Implications of SARS-CoV-2 Mutations for Genomic RNA Structure and Host microRNA Targeting. PMID:32645951
Identification and characterization of cellular heterogeneity within the developing renal interstitium. PMID:32586976
LSD1 Cooperates with Noncanonical NF-κB Signaling to Regulate Marginal Zone B Cell Development. PMID:31492745
Epimutations in Developmental Genes Underlie the Onset of Domestication in Farmed European Sea Bass. PMID:31289822
CoCoScore: context-aware co-occurrence scoring for text mining applications using distant supervision. PMID:31199464
The Promoter Regions of Intellectual Disability-Associated Genes Are Uniquely Enriched in LTR Sequences of the MER41 Primate-Specific Endogenous Retrovirus: An Evolutionary Connection Between Immunity and Cognition. PMID:31031802
Design, implementation, and operation of a rapid, robust named entity recognition web service. PMID:30850898
How to Develop a Drug Target Ontology: KNowledge Acquisition and Representation Methodology (KNARM). PMID:30848456
Genetic meta-analysis of diagnosed Alzheimer's disease identifies new risk loci and implicates Aβ, tau, immunity and lipid processing. PMID:30820047
Analysis of Predicted Host-Parasite Interactomes Reveals Commonalities and Specificities Related to Parasitic Lifestyle and Tissues Tropism. PMID:30815000
Context-dependent prediction of protein complexes by SiComPre. PMID:30245847
Rare Variants in Known Susceptibility Loci and Their Contribution to Risk of Lung Cancer. PMID:29981437
Site-specific characterization of endogenous SUMOylation across species and organs. PMID:29942033
Exploring the functional impact of alternative splicing on human protein isoforms using available annotation sources. PMID:29931155
Systematic interrogation of diverse Omic data reveals interpretable, robust, and generalizable transcriptomic features of clinically successful therapeutic targets. PMID:29782487
Coding and Non-coding RNAs, the Frontier Has Never Been So Blurred. PMID:29720998
TISSUES 2.0: an integrative web resource on mammalian tissue expression. PMID:29617745
A comprehensive and quantitative comparison of text-mining in 15 million full-text articles versus their corresponding abstracts. PMID:29447159
CORNAS: coverage-dependent RNA-Seq analysis of gene expression data without biological replicates. PMID:29297307
Drug target ontology to classify and integrate drug discovery data. PMID:29122012
Neuroinflammation and ALS: Transcriptomic Insights into Molecular Disease Mechanisms and Therapeutic Targets. PMID:29081603
Systematic integration of biomedical knowledge prioritizes drugs for repurposing. PMID:28936969
Gene ORGANizer: linking genes to the organs they affect. PMID:28444223
Computational polypharmacology: a new paradigm for drug discovery. PMID:28067061
The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible. PMID:27924014
Comparative analysis of housekeeping and tissue-specific driver nodes in human protein interaction networks. PMID:27612563
Data sources for in vivo molecular profiling of human phenotypes. PMID:27599755
Overview of the interactive task in BioCreative V. PMID:27589961
The harmonizome: a collection of processed datasets gathered to serve and mine knowledge about genes and proteins. PMID:27374120
Genic insights from integrated human proteomics in GeneCards. PMID:27048349
EXTRACT: interactive extraction of environment metadata and term suggestion for metagenomic sample annotation. PMID:26896844
STITCH 5: augmenting protein-chemical interaction networks with tissue and affinity data. PMID:26590256
Experimental detection of short regulatory motifs in eukaryotic proteins: tips for good practice as well as for bad. PMID:26581338
Impacts of Alternative Splicing Events on the Differentiation of Adipocytes. PMID:26389882
Tags:
Tags
More detailed information about this field from each metasource.
dna microarray
metasource: Fairsharing.org
version: FAIRsharing.org: TISSUES; TISSUES; DOI: https://doi.org/10.25504/FAIRsharing.yXPvpU; Last edited: Jan. 29, 2020, 10:33 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
gene expression
metasource: Fairsharing.org
version: FAIRsharing.org: TISSUES; TISSUES; DOI: https://doi.org/10.25504/FAIRsharing.yXPvpU; Last edited: Jan. 29, 2020, 10:33 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:51.296176
gene expression data
metasource: Fairsharing.org
version: FAIRsharing.org: TISSUES; TISSUES; DOI: https://doi.org/10.25504/FAIRsharing.yXPvpU; Last edited: Jan. 29, 2020, 10:33 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
rna sequencing
metasource: Fairsharing.org
version: FAIRsharing.org: TISSUES; TISSUES; DOI: https://doi.org/10.25504/FAIRsharing.yXPvpU; Last edited: Jan. 29, 2020, 10:33 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
text mining
metasource: Fairsharing.org
version: FAIRsharing.org: TISSUES; TISSUES; DOI: https://doi.org/10.25504/FAIRsharing.yXPvpU; Last edited: Jan. 29, 2020, 10:33 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
natural language processing
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:51.296176
data visualisation
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:51.296176
Tags
More detailed information about this field from each metasource.
dna microarray
metasource: Fairsharing.orgversion: FAIRsharing.org: TISSUES; TISSUES; DOI: https://doi.org/10.25504/FAIRsharing.yXPvpU; Last edited: Jan. 29, 2020, 10:33 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
gene expression
metasource: Fairsharing.orgversion: FAIRsharing.org: TISSUES; TISSUES; DOI: https://doi.org/10.25504/FAIRsharing.yXPvpU; Last edited: Jan. 29, 2020, 10:33 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:51.296176
gene expression data
metasource: Fairsharing.orgversion: FAIRsharing.org: TISSUES; TISSUES; DOI: https://doi.org/10.25504/FAIRsharing.yXPvpU; Last edited: Jan. 29, 2020, 10:33 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
rna sequencing
metasource: Fairsharing.orgversion: FAIRsharing.org: TISSUES; TISSUES; DOI: https://doi.org/10.25504/FAIRsharing.yXPvpU; Last edited: Jan. 29, 2020, 10:33 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
text mining
metasource: Fairsharing.orgversion: FAIRsharing.org: TISSUES; TISSUES; DOI: https://doi.org/10.25504/FAIRsharing.yXPvpU; Last edited: Jan. 29, 2020, 10:33 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
natural language processing
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:51.296176
data visualisation
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:51.296176
dna microarray gene expression gene expression rna sequence text mining natural language processing data visualisation
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