phiSITE

Names
More detailed information about this field from each metasource.

phiSITE
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:01.449908

phisite
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:01.449908

Other names: phisite

Gene regulation in bacteriophages

Webpage:

http://www.phisite.org

Publications:

Publications
More detailed information about this field from each metasource.

phiSITE: database of gene regulation in bacteriophages
PMID: 19900969
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:01.449908

http://nar.oxfordjournals.org/content/38/suppl_1/D366
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

phiSITE: database of gene regulation in bacteriophages PubMed citations: 45.

45 articles citing: phiSITE: database of gene regulation in bacteriophages

Phage Annotation Guide: Guidelines for Assembly and High-Quality Annotation. PMID:35083439
Current and Emerging Tools of Computational Biology To Improve the Detoxification of Mycotoxins. PMID:34878810
Further Studies on the 3-Ketosteroid 9α-Hydroxylase of Rhodococcus ruber Chol-4, a Rieske Oxygenase of the Steroid Degradation Pathway. PMID:34072338
Identification of Streptococcus thermophilus Genes Specifically Expressed under Simulated Human Digestive Conditions Using R-IVET Technology. PMID:34064045
Diverse Viruses Carrying Genes for Microbial Extremotolerance in the Atacama Desert Hyperarid Soil. PMID:34006626
Mucin degrader Akkermansia muciniphila accelerates intestinal stem cell-mediated epithelial development. PMID:33678130
Cra and cAMP Receptor Protein Have Opposing Roles in the Regulation of fruB in Vibrio cholerae. PMID:33649152
A Novel Group of Promiscuous Podophages Infecting Diverse Gammaproteobacteria from River Communities Exhibits Dynamic Intergenus Host Adaptation. PMID:33531404
Designing P. aeruginosa synthetic phages with reduced genomes. PMID:33495501
Identification of a cytosine methyltransferase that improves transformation efficiency in Methylomonas sp. DH-1. PMID:33372613
Modulating Isoprenoid Biosynthesis Increases Lipooligosaccharides and Restores Acinetobacter baumannii Resistance to Host and Antibiotic Stress. PMID:32905776
Global Regulator of Rubber Degradation in Gordonia polyisoprenivorans VH2: Identification and Involvement in the Regulation Network. PMID:32444473
A Tailspike with Exopolysaccharide Depolymerase Activity from a New Providencia stuartii Phage Makes Multidrug-Resistant Bacteria Susceptible to Serum-Mediated Killing. PMID:32357999
Complete Genome Sequence of Xanthomonas vesicatoria Bacteriophage ΦXaF18, a Contribution to the Biocontrol of Bacterial Spot of Pepper in Mexico. PMID:32299878
Two genes involved in clindamycin resistance of Bacillus licheniformis and Bacillus paralicheniformis identified by comparative genomic analysis. PMID:32271828
Morphologically Different Pectobacterium brasiliense Bacteriophages PP99 and PP101: Deacetylation of O-Polysaccharide by the Tail Spike Protein of Phage PP99 Accompanies the Infection. PMID:32038580
Complete Genome Sequence of XaF13, a Novel Bacteriophage of Xanthomonas vesicatoria from Mexico. PMID:32001564
Characterization of a new podovirus infecting Paenibacillus larvae. PMID:31889094
Escherichia coli and Salmonella Enteritidis dual-species biofilms: interspecies interactions and antibiofilm efficacy of phages. PMID:31796870
Coevolutionary Couplings Unravel PAM-Proximal Constraints of CRISPR-SpCas9. PMID:31648792
Transcription of cis Antisense Small RNA MtlS in Vibrio cholerae Is Regulated by Transcription of Its Target Gene, mtlA. PMID:31036726
Complete Genome Sequence of a Lytic T7-Like Phage, Escherichia Phage vB_EcoP-Ro45lw, Isolated from Nonfecal Compost Samples. PMID:30834377
The Prophages of Citrobacter rodentium Represent a Conserved Family of Horizontally Acquired Mobile Genetic Elements Associated with Enteric Evolution towards Pathogenicity. PMID:30782635
Host Specificity of the Dickeya Bacteriophage PP35 Is Directed by a Tail Spike Interaction With Bacterial O-Antigen, Enabling the Infection of Alternative Non-pathogenic Bacterial Host. PMID:30687274
iac Gene Expression in the Indole-3-Acetic Acid-Degrading Soil Bacterium Enterobacter soli LF7. PMID:30054366
The TubR-centromere complex adopts a double-ring segrosome structure in Type III partition systems. PMID:29762781
Genomic analysis and immune response in a murine mastitis model of vB_EcoM-UFV13, a potential biocontrol agent for use in dairy cows. PMID:29717158
Characterization of a New Staphylococcus aureus Kayvirus Harboring a Lysin Active against Biofilms. PMID:29642449
Synergistic Antimicrobial Interaction between Honey and Phage against Escherichia coli Biofilms. PMID:29276503
Real-time observation of polymerase-promoter contact remodeling during transcription initiation. PMID:29079833
A versatile vector for mycobacterial protein production with a functional minimized acetamidase regulon. PMID:28857325
Comparative Analysis of Ralstonia solanacearum Methylomes. PMID:28450872
One Gene and Two Proteins: a Leaderless mRNA Supports the Translation of a Shorter Form of the Shigella VirF Regulator. PMID:27834204
Genomic and Transcriptional Mapping of PaMx41, Archetype of a New Lineage of Bacteriophages Infecting Pseudomonas aeruginosa. PMID:27590812
Regulation of Gene Expression in Shewanella oneidensis MR-1 during Electron Acceptor Limitation and Bacterial Nanowire Formation. PMID:27342561
When Genome-Based Approach Meets the "Old but Good": Revealing Genes Involved in the Antibacterial Activity of Pseudomonas sp. P482 against Soft Rot Pathogens. PMID:27303376
Genetic characterization of ØVC8 lytic phage for Vibrio cholerae O1. PMID:27000701
Direct sequencing of human gut virome fractions obtained by flow cytometry. PMID:26441889
Genome-Scale Mapping of Escherichia coli σ54 Reveals Widespread, Conserved Intragenic Binding. PMID:26425847
An SOS Regulon under Control of a Noncanonical LexA-Binding Motif in the Betaproteobacteria. PMID:25986903
A cis-regulatory antisense RNA represses translation in Vibrio cholerae through extensive complementarity and proximity to the target locus. PMID:25826566
Identification and characterization of VpsR and VpsT binding sites in Vibrio cholerae. PMID:25622616
Unraveling the web of viroinformatics: computational tools and databases in virus research. PMID:25428870
BioXSD: the common data-exchange format for everyday bioinformatics web services. PMID:20823319
The 2010 Nucleic Acids Research Database Issue and online Database Collection: a community of data resources. PMID:19965766
http://nar.oxfordjournals.org/content/38/suppl_1/D366

Tags:

Tags
More detailed information about this field from each metasource.

genomics databases (non-vertebrate)
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

viral genome databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

transcription factors and regulatory sites
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:01.449908

gene regulation
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:01.449908

molecular interactions, pathways and networks
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:01.449908

gene and protein families
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:01.449908

genomics viral genome transcription factors and regulatory sites gene regulation molecular interactions, pathways and networks gene and protein families

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