WebGeSTer DB
Names
More detailed information about this field from each metasource.
WebGeSTer DB
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:02.926258
webgester_db
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:02.926258
Names
More detailed information about this field from each metasource.
WebGeSTer DB
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:02.926258
webgester_db
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:02.926258
Names
More detailed information about this field from each metasource.
WebGeSTer DB
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:02.926258
webgester_db
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:02.926258
WebGesTer Database (DB) is the largest compilation of intrinsic terminators of transcription. It comprises of >2,200,000 bacterial terminators identified from a total of 2036 chromosomes and 1508 plasmids. The database is the storehouse for algorithm WebGeSTer which can search and identify intrinsic terminators in any completely sequenced bacterial genome. In the database, users will find information about structural parameters of individual terminators such as sequence, length of stem and loop, mismatches and gaps, U-trail, genomic coordinates and gene name and accession number in both tabular form and as a composite figure.
Description
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WebGesTer Database (DB) is the largest compilation of intrinsic terminators of transcription. It comprises of >2,200,000 bacterial terminators identified from a total of 2036 chromosomes and 1508 plasmids. The database is the storehouse for algorithm WebGeSTer which can search and identify intrinsic terminators in any completely sequenced bacterial genome. In the database, users will find information about structural parameters of individual terminators such as sequence, length of stem and loop, mismatches and gaps, U-trail, genomic coordinates and gene name and accession number in both tabular form and as a composite figure.
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Database of intrinsic transcription terminators identified in bacterial genome sequences and plasmids. Users can obtain both graphic and tabular results on putative terminators based on default or user-defined parameters. The results are arranged in different tiers to facilitate retrieval, as per the specific requirements. An interactive map has been incorporated to visualize the distribution of terminators across the whole genome.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:02.926258
Webpage:
http://pallab.serc.iisc.ernet.in/gester/Webpage
More detailed information about this field from each metasource.
http://pallab.serc.iisc.ernet.in/gester/
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
http://pallab.serc.iisc.ernet.in/gester
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:02.926258
Publications:
Publications
More detailed information about this field from each metasource.
WebGeSTer DB--a transcription terminator database
PMID: 20972211
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:02.926258
http://dx.doi.org/10.1093/nar/gkq971
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
WebGeSTer DB--a transcription terminator database
PMID: 20972211
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:02.926258
http://dx.doi.org/10.1093/nar/gkq971
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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WebGeSTer DB--a transcription terminator database
PubMed citations: 46.
46 articles citing: WebGeSTer DB--a transcription terminator database
Distinct Expansion of Group II Introns During Evolution of Prokaryotes and Possible Factors Involved in Its Regulation. PMID:35295308
Genome-scale analysis of genetic regulatory elements in Streptomyces avermitilis MA-4680 using transcript boundary information. PMID:35062881
Recent Development of Probiotic Bifidobacteria for Treating Human Diseases. PMID:35004640
Clusters of hairpins induce intrinsic transcription termination in bacteria. PMID:34376740
The transcriptional landscape of a rewritten bacterial genome reveals control elements and genome design principles. PMID:34031412
Construction of a reporter system for bifidobacteria using chloramphenicol acetyltransferase and its application for evaluation of promoters and terminators. PMID:33996368
Elucidating the Regulatory Elements for Transcription Termination and Posttranscriptional Processing in the Streptomyces clavuligerus Genome. PMID:33947798
Considerable increase in Poly(3-hydroxybutyrate) production via phbC gene overexpression in Ralstonia eutropha PTCC 1615. PMID:33469508
A possible universal role for mRNA secondary structure in bacterial translation revealed using a synthetic operon. PMID:32973167
Genome-Wide Analysis of RNA Decay in the Cyanobacterium Synechococcus sp. Strain PCC 7002. PMID:32753502
A Novel Small RNA on the Pseudomonas putida KT2440 Chromosome Is Involved in the Fitness Cost Imposed by IncP-1 Plasmid RP4. PMID:32655527
Plasticity of the peroxidase AhpC links multiple substrates to diverse disulfide-reducing pathways in Shewanella oneidensis. PMID:32532818
Small Noncoding RNA CjNC110 Influences Motility, Autoagglutination, AI-2 Localization, Hydrogen Peroxide Sensitivity, and Chicken Colonization in Campylobacter jejuni. PMID:32366573
Regulation of Bottromycin Biosynthesis Involves an Internal Transcriptional Start Site and a Cluster-Situated Modulator. PMID:32273872
Genome-wide identification of the context-dependent sRNA expression in Mycobacterium tuberculosis. PMID:32070281
Computational Tools for Discovering and Engineering Natural Product Biosynthetic Pathways. PMID:31926431
Processing generates 3' ends of RNA masking transcription termination events in prokaryotes. PMID:30782818
Synbiological systems for complex natural products biosynthesis. PMID:29062947
Regulation of a muralytic enzyme-encoding gene by two non-coding RNAs. PMID:28640671
Genome Partitioner: A web tool for multi-level partitioning of large-scale DNA constructs for synthetic biology applications. PMID:28531174
Compensatory Evolution of Intrinsic Transcription Terminators in Bacillus Cereus. PMID:28201729
Rickettsia Sca4 Reduces Vinculin-Mediated Intercellular Tension to Promote Spread. PMID:27768890
Computational prediction of regulatory, premature transcription termination in bacteria. PMID:27574119
Regulation of Pyrroloquinoline Quinone-Dependent Glucose Dehydrogenase Activity in the Model Rhizosphere-Dwelling Bacterium Pseudomonas putida KT2440. PMID:27287323
Genome-wide transcription start site mapping of Bradyrhizobium japonicum grown free-living or in symbiosis - a rich resource to identify new transcripts, proteins and to study gene regulation. PMID:27107716
Genetic characterization of ØVC8 lytic phage for Vibrio cholerae O1. PMID:27000701
Discovery and profiling of small RNAs responsive to stress conditions in the plant pathogen Pectobacterium atrosepticum. PMID:26753530
Evidence for the recent origin of a bacterial protein-coding, overlapping orphan gene by evolutionary overprinting. PMID:26677845
Comparative analysis of multiple inducible phages from Mannheimia haemolytica. PMID:26318735
Databases for Microbiologists. PMID:26013493
Highly reproductive Escherichia coli cells with no specific assignment to the UAG codon. PMID:25982672
Transcriptional mechanisms for differential expression of outer membrane cytochrome genes omcA and mtrC in Shewanella oneidensis MR-1. PMID:25886963
Intrinsic terminators in Mycoplasma hyopneumoniae transcription. PMID:25886614
Isolation and characterization of a "phiKMV-like" bacteriophage and its therapeutic effect on mink hemorrhagic pneumonia. PMID:25615639
Cyclic di-GMP riboswitch-regulated type IV pili contribute to aggregation of Clostridium difficile. PMID:25512308
Mycobacterium tuberculosis Rho is an NTPase with distinct kinetic properties and a novel RNA-binding subdomain. PMID:25229539
Four Escherichia coli O157:H7 phages: a new bacteriophage genus and taxonomic classification of T1-like phages. PMID:24963920
The oxygen-independent metabolism of cyclic monoterpenes in Castellaniella defragrans 65Phen. PMID:24952578
Identification of a conserved branched RNA structure that functions as a factor-independent terminator. PMID:24550474
Synthetic circuit of inositol phosphorylceramide synthase in Leishmania : a chemical biology approach. PMID:24386012
Genome-scale analyses of Escherichia coli and Salmonella enterica AraC reveal noncanonical targets and an expanded core regulon. PMID:24272778
Actinomycetes biosynthetic potential: how to bridge in silico and in vivo? PMID:24127068
Characterization of 582 natural and synthetic terminators and quantification of their design constraints. PMID:23727987
Genome-wide discovery of small RNAs in Mycobacterium tuberculosis. PMID:23284830
A Shigella boydii bacteriophage which resembles Salmonella phage ViI. PMID:21595934
Bacterial transcription terminators: the RNA 3'-end chronicles. PMID:21439297 - http://dx.doi.org/10.1093/nar/gkq971
Tags:
Tags
More detailed information about this field from each metasource.
nucleotide sequence databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
transcriptional regulator sites and transcription factors
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
transcription factors and regulatory sites
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:02.926258
gene expression
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:02.926258
mapping
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:02.926258
molecular interactions, pathways and networks
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:02.926258
Tags
More detailed information about this field from each metasource.
nucleotide sequence databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
transcriptional regulator sites and transcription factors
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
transcription factors and regulatory sites
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:02.926258
gene expression
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:02.926258
mapping
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:02.926258
molecular interactions, pathways and networks
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:02.926258
nucleic acid sequence transcription transcription factors and regulatory sites gene expression mapping molecular interactions, pathways and networks
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