oRNAment

A database of putative RNA binding protein target sites in the transcriptomes of model species. Dashboard - Overview of the database. Welcome to oRNAment - o RNA motifs enrichment in complete transcriptomes. Here, we developed a computational tool to enable the global mapping of putative RBP target motifs across full transcriptomes, including messenger RNAs (mRNAs) and non-coding RNAs, in multiple species. The oRNAment database provides a user-friendly interface to parse the motif scan data. See tutorial for further detail

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Publications

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oRNAment: a database of putative RNA binding protein target sites in the transcriptomes of model species
PMID: 31724725

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:14.212136

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• oRNAment: a database of putative RNA binding protein target sites in the transcriptomes of model species PubMed citations: 23.

  23 articles citing: oRNAment: a database of putative RNA binding protein target sites in the transcriptomes of model species

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  Betacoronavirus-specific alternate splicing. PMID:35074468

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  Comprehensive Analysis of Co-Mutations Identifies Cooperating Mechanisms of Tumorigenesis. PMID:35053577

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  Rbfox1 is required for myofibril development and maintaining fiber type-specific isoform expression in Drosophila muscles. PMID:34996845

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  The landscape of regulatory genes in brain-wide neuronal phenotypes of a vertebrate brain. PMID:34895465

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  Bioinformatic Tools for the Analysis and Prediction of ncRNA Interactions. PMID:34768830

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  RNAInter v4.0: RNA interactome repository with redefined confidence scoring system and improved accessibility. PMID:34718726

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  Introduction to Bioinformatics Resources for Post-transcriptional Regulation of Gene Expression. PMID:34694601

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  SBSA: an online service for somatic binding sequence annotation. PMID:34606615

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  Integrative proteome analysis implicates aberrant RNA splicing in impaired developmental potential of aged mouse oocytes. PMID:34582091

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  Insm1, Neurod1, and Pax6 promote murine pancreatic endocrine cell development through overlapping yet distinct RNA transcription and splicing programs. PMID:34534285

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  RNA editing affects cis-regulatory elements and predicts adverse cancer survival. PMID:34319007

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  Betacoronavirus-specific alternate splicing. PMID:34230929

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  A Survey of Current Resources to Study lncRNA-Protein Interactions. PMID:34201302

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  Genes with 5' terminal oligopyrimidine tracts preferentially escape global suppression of translation by the SARS-CoV-2 Nsp1 protein. PMID:34127534

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  catRAPID omics v2.0: going deeper and wider in the prediction of protein-RNA interactions. PMID:34086933

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  Interplay of RNA-Binding Proteins and microRNAs in Neurodegenerative Diseases. PMID:34069857

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  The evolution of alternative splicing in glioblastoma under therapy. PMID:33499924

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  ExonSkipAD provides the functional genomic landscape of exon skipping events in Alzheimer's disease. PMID:33497435

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  Long Non-Coding RNAs in Diffuse Large B-Cell Lymphoma. PMID:33379241

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  Investigation of de novo mutations in a schizophrenia case-parent trio by induced pluripotent stem cell-based in vitro disease modeling: convergence of schizophrenia- and autism-related cellular phenotypes. PMID:33246498

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  SMDB: pivotal somatic sequence alterations reprogramming regulatory cascades. PMID:33094288

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  Genes with 5' terminal oligopyrimidine tracts preferentially escape global suppression of translation by the SARS-CoV-2 Nsp1 protein. PMID:32995776

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  Splicing Enhancers at Intron-Exon Borders Participate in Acceptor Splice Sites Recognition. PMID:32911621

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gene transcripts

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:14.212136

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transcriptomics

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:14.212136

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functional, regulatory and non-coding rna

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:14.212136

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protein interactions

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:14.212136

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endocrinology and metabolism

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:14.212136

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gene transcripts transcriptomics functional, regulatory and non-coding rna protein interaction endocrinology and metabolism