decRiPPter
Integration of machine learning and pan-genomics expands the biosynthetic landscape of RiPP natural products. decRiPPter (Data-driven Exploratory Class-independent RiPP TrackER). Alexander M. Kloosterman, Peter Cimermancic, Somayah S. Elsayed, Chao Du, Michalis Hadjithomas, Mohamed S. Donia, Michael A. Fischbach, Gilles P. van Wezel, and Marnix H. Medema. decRiPPter is a genome mining tool for detection of novel biosynthetic gene clusters (BGCs) of ribosomally synthesized and post-translationally modified peptides (RiPPs). Number of operons with antismash overlap. Nr of operons with known RiPP domains.
Description
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Integration of machine learning and pan-genomics expands the biosynthetic landscape of RiPP natural products. decRiPPter (Data-driven Exploratory Class-independent RiPP TrackER). Alexander M. Kloosterman, Peter Cimermancic, Somayah S. Elsayed, Chao Du, Michalis Hadjithomas, Mohamed S. Donia, Michael A. Fischbach, Gilles P. van Wezel, and Marnix H. Medema. decRiPPter is a genome mining tool for detection of novel biosynthetic gene clusters (BGCs) of ribosomally synthesized and post-translationally modified peptides (RiPPs). Number of operons with antismash overlap. Nr of operons with known RiPP domains.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:28:06.126359
Webpage:
http://www.bioinformatics.nl/~medem005/decRiPPter_strict/index.htmlWebpage
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http://www.bioinformatics.nl/~medem005/decRiPPter_strict/index.html
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:28:06.126359
Licence:
Name: AGPL-3.0Licence name
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Publications:
Publications
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http://dx.doi.org/10.1101/2020.05.19.104752
metasource: bio.tools
version: extracted_at: 2022-11-04T11:28:06.126359
Publications
More detailed information about this field from each metasource.
http://dx.doi.org/10.1101/2020.05.19.104752
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:28:06.126359
Tags:
Tags
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gene structure
metasource: bio.tools
version: extracted_at: 2022-11-04T11:28:06.126359
small molecules
metasource: bio.tools
version: extracted_at: 2022-11-04T11:28:06.126359
enzymes
metasource: bio.tools
version: extracted_at: 2022-11-04T11:28:06.126359
transcription factors and regulatory sites
metasource: bio.tools
version: extracted_at: 2022-11-04T11:28:06.126359
cell biology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:28:06.126359
Tags
More detailed information about this field from each metasource.
gene structure
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:28:06.126359
small molecules
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:28:06.126359
enzymes
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:28:06.126359
transcription factors and regulatory sites
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:28:06.126359
cell biology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:28:06.126359
gene structure small molecule enzyme transcription factors and regulatory sites cell biology
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