Natural Products Atlas
Other names: Natural_Products_Atlas
An Open Access Knowledge Base for Microbial Natural Products Discovery. The Natural Products Atlas Network views of chemical space. The Natural Products Atlas provides a unique tools for exploring natural products chemical space, offering perspective on the position that any molecule occupies
Description
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An Open Access Knowledge Base for Microbial Natural Products Discovery. The Natural Products Atlas Network views of chemical space. The Natural Products Atlas provides a unique tools for exploring natural products chemical space, offering perspective on the position that any molecule occupies
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:16.234102
Webpage:
http://www.npatlas.orgWebpage
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Publications:
Publications
More detailed information about this field from each metasource.
The Natural Products Atlas: An Open Access Knowledge Base for Microbial Natural Products Discovery
PMID: 31807684
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:16.234102
Publications
More detailed information about this field from each metasource.
The Natural Products Atlas: An Open Access Knowledge Base for Microbial Natural Products Discovery
PMID: 31807684
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:16.234102
-
The Natural Products Atlas: An Open Access Knowledge Base for Microbial Natural Products Discovery
PubMed citations: 86.
86 articles citing: The Natural Products Atlas: An Open Access Knowledge Base for Microbial Natural Products Discovery
Strategies to access biosynthetic novelty in bacterial genomes for drug discovery. PMID:35296832
Halovirs I-K, antibacterial and cytotoxic lipopeptaibols from the plant pathogenic fungus Paramyrothecium roridum NRRL 2183. PMID:35288678
Metabolomics on the study of marine organisms. PMID:35235054
NP Analyst: An Open Online Platform for Compound Activity Mapping. PMID:35233454
Rare actinobacteria isolated from the hypersaline Ojo de Liebre Lagoon as a source of novel bioactive compounds with biotechnological potential. PMID:35213299
Biosynthetic Potential of the Endophytic Fungus Helotiales sp. BL73 Revealed via Compound Identification and Genome Mining. PMID:35108081
Aulosirazoles B and C from the Cyanobacterium Nostoc sp. UIC 10771: Analogues of an Isothiazolonaphthoquinone Scaffold that Activate Nuclear Transcription Factor FOXO3a in Ovarian Cancer Cells. PMID:35100504
Induction of Isochromanones by Co-Cultivation of the Marine Fungus Cosmospora sp. and the Phytopathogen Magnaporthe oryzae. PMID:35054969
New Deoxyenhygrolides from Plesiocystis pacifica Provide Insights into Butenolide Core Biosynthesis. PMID:35049927
Potential Anti-Obesity, Anti-Steatosis, and Anti-Inflammatory Properties of Extracts from the Microalgae Chlorella vulgaris and Chlorococcum amblystomatis under Different Growth Conditions. PMID:35049863
An isotopic labeling approach linking natural products with biosynthetic gene clusters. PMID:34969972
Genome-Guided Discovery of the First Myxobacterial Biarylitide Myxarylin Reveals Distinct C-N Biaryl Crosslinking in RiPP Biosynthesis. PMID:34946566
Structure-Function Characteristics of SARS-CoV-2 Proteases and Their Potential Inhibitors from Microbial Sources. PMID:34946083
Potential Antagonistic Bacteria against Verticillium dahliae Isolated from Artificially Infested Nursery. PMID:34944096
Metabolomics Tools Assisting Classic Screening Methods in Discovering New Antibiotics from Mangrove Actinomycetia in Leizhou Peninsula. PMID:34940687
Probing the Therapeutic Potential of Marine Phyla by SPE Extraction. PMID:34822511
Advances in decomposing complex metabolite mixtures using substructure- and network-based computational metabolomics approaches. PMID:34821250
Genome-Guided Discovery of Natural Products through Multiplexed Low-Coverage Whole-Genome Sequencing of Soil Actinomycetes on Oxford Nanopore Flongle. PMID:34812649
NP-MRD: the Natural Products Magnetic Resonance Database. PMID:34791429
Benefiting from big data in natural products: importance of preserving foundational skills and prioritizing data quality. PMID:34734219
The Natural Products Atlas 2.0: a database of microbially-derived natural products. PMID:34718710
Biogeography of Bacterial Communities and Specialized Metabolism in Human Aerodigestive Tract Microbiomes. PMID:34704787
Marine Biodiscovery in a Changing World. PMID:34698944
Contemporary Approaches to the Discovery and Development of Broad-Spectrum Natural Product Prototypes for the Control of Coronaviruses. PMID:34677966
Nerpa: A Tool for Discovering Biosynthetic Gene Clusters of Bacterial Nonribosomal Peptides. PMID:34677408
Classifying natural products from plants, fungi or bacteria using the COCONUT database and machine learning. PMID:34663470
NPClassifier: A Deep Neural Network-Based Structural Classification Tool for Natural Products. PMID:34662515
"Microbial Wars" in a Stirred Tank Bioreactor: Investigating the Co-Cultures of Streptomyces rimosus and Aspergillus terreus, Filamentous Microorganisms Equipped With a Rich Arsenal of Secondary Metabolites. PMID:34660550
Discovery and characterisation of an amidine-containing ribosomally-synthesised peptide that is widely distributed in nature. PMID:34659714
Advancements in capturing and mining mass spectrometry data are transforming natural products research. PMID:34612288
Orally Administered Natural Lipid Nanoparticle-Loaded 6-Shogaol Shapes the Anti-Inflammatory Microbiota and Metabolome. PMID:34575431
Mass spectrometry-based metabolomics in microbiome investigations. PMID:34552265
An overview of potential inhibitors targeting non-structural proteins 3 (PLpro and Mac1) and 5 (3CLpro/Mpro) of SARS-CoV-2. PMID:34457214
Facilitating Imaging Mass Spectrometry of Microbial Specialized Metabolites with METASPACE. PMID:34436418
Comprehensive Large-Scale Integrative Analysis of Omics Data To Accelerate Specialized Metabolite Discovery. PMID:34427506
Towards the sustainable discovery and development of new antibiotics. PMID:34426795
Dereplication, Annotation, and Characterization of 74 Potential Antimicrobial Metabolites from Penicillium Sclerotiorum Using t-SNE Molecular Networks. PMID:34357338
Phormidepistatin from the Cyanobacterium UIC 10484: Assessing the Phylogenetic Distribution of the Statine Pharmacophore. PMID:34314586
Characterization of the Exometabolome of Nitrosopumilus maritimus SCM1 by Liquid Chromatography-Ion Mobility Mass Spectrometry. PMID:34276593
MassSpecBlocks: a web-based tool to create building blocks and sequences of nonribosomal peptides and polyketides for tandem mass spectra analysis. PMID:34233741
MolDiscovery: learning mass spectrometry fragmentation of small molecules. PMID:34140479
Mining genomes to illuminate the specialized chemistry of life. PMID:34083778
Aspergillus Metabolome Database for Mass Spectrometry Metabolomics. PMID:34063531
MetFish: a Metabolomics Pipeline for Studying Microbial Communities in Chemically Extreme Environments. PMID:34061574
Synthetic biology approaches to actinomycete strain improvement. PMID:34057181
Applications of Virtual Screening in Bioprospecting: Facts, Shifts, and Perspectives to Explore the Chemo-Structural Diversity of Natural Products. PMID:33996755
Synergizing the potential of bacterial genomics and metabolomics to find novel antibiotics. PMID:33995996
Phylogenetic analysis of the salinipostin γ-butyrolactone gene cluster uncovers new potential for bacterial signalling-molecule diversity. PMID:33979276
An interpreted atlas of biosynthetic gene clusters from 1,000 fungal genomes. PMID:33941694
Heterologous production of cyanobacterial compounds. PMID:33928376
Bioprospecting of Soil-Derived Actinobacteria Along the Alar-Hotan Desert Highway in the Taklamakan Desert. PMID:33790875
Development of an NMR-Based Platform for the Direct Structural Annotation of Complex Natural Products Mixtures. PMID:33750122
Blocks in the pseudouridimycin pathway unlock hidden metabolites in the Streptomyces producer strain. PMID:33712632
PSC-db: A Structured and Searchable 3D-Database for Plant Secondary Compounds. PMID:33672700
A community resource for paired genomic and metabolomic data mining. PMID:33589842
Intense bitterness of molecules: Machine learning for expediting drug discovery. PMID:33510862
Planomonospora: A Metabolomics Perspective on an Underexplored Actinobacteria Genus. PMID:33496580
The Landscape of Recombination Events That Create Nonribosomal Peptide Diversity. PMID:33480992
Diverse Taxonomies for Diverse Chemistries: Enhanced Representation of Natural Product Metabolism in UniProtKB. PMID:33445429
COCONUT online: Collection of Open Natural Products database. PMID:33423696
Can natural products stop the SARS-CoV-2 virus? A docking and molecular dynamics study of a natural product database. PMID:33415989
Geometrically Diverse Lariat Peptide Scaffolds Reveal an Untapped Chemical Space of High Membrane Permeability. PMID:33381960
Diversity, Bioactivity Profiling and Untargeted Metabolomics of the Cultivable Gut Microbiota of Ciona intestinalis. PMID:33374243
Recent developments of tools for genome and metabolome studies in basidiomycete fungi and their application to natural product research. PMID:33268478
Comprehensive prediction of secondary metabolite structure and biological activity from microbial genome sequences. PMID:33247171
Bacterial terpenome. PMID:33169126
Culture-Dependent Microbiome of the Ciona intestinalis Tunic: Isolation, Bioactivity Profiling and Untargeted Metabolomics. PMID:33167375
Diversity and Bioactive Potential of Actinobacteria Isolated from a Coastal Marine Sediment in Northern Portugal. PMID:33143202
Screening Fungal Endophytes Derived from Under-Explored Egyptian Marine Habitats for Antimicrobial and Antioxidant Properties in Factionalised Textiles. PMID:33096635
Cryptic or Silent? The Known Unknowns, Unknown Knowns, and Unknown Unknowns of Secondary Metabolism. PMID:33082252
StreptomeDB 3.0: an updated compendium of streptomycetes natural products. PMID:33051671
BiG-FAM: the biosynthetic gene cluster families database. PMID:33010170
Assigning the Origin of Microbial Natural Products by Chemical Space Map and Machine Learning. PMID:32998475
Microbial natural product databases: moving forward in the multi-omics era. PMID:32856641
From Ocean to Medicine: Pharmaceutical Applications of Metabolites from Marine Bacteria. PMID:32731464
Cheminformatics in Natural Product-based Drug Discovery. PMID:32725781
The need to innovate sample collection and library generation in microbial drug discovery: a focus on academia. PMID:32706349
Microbial Natural Products as Potential Inhibitors of SARS-CoV-2 Main Protease (Mpro). PMID:32610445
Mass Spectrometry: A Rosetta Stone to Learn How Fungi Interact and Talk. PMID:32575729
Advances in the study of drug metabolism - symposium report of the 12th Meeting of the International Society for the Study of Xenobiotics (ISSX). PMID:32456484
ARTS 2.0: feature updates and expansion of the Antibiotic Resistant Target Seeker for comparative genome mining. PMID:32427317
Nematode-Trapping Fungi Produce Diverse Metabolites during Predator-Prey Interaction. PMID:32245081
Targeted Isolation of Indole Alkaloids from Streptomyces sp. CT37. PMID:32131464
Functional group and diversity analysis of BIOFACQUIM: A Mexican natural product database. PMID:32047598
A Convolutional Neural Network-Based Approach for the Rapid Annotation of Molecularly Diverse Natural Products. PMID:32045230
Signalling and Bioactive Metabolites from Streptomyces sp. RK44. PMID:31979050
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chemistry
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:16.234102
natural language processing
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:16.234102
small molecules
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:16.234102
nmr
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:16.234102
biotechnology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:16.234102
Tags
More detailed information about this field from each metasource.
chemistry
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:16.234102
natural language processing
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:16.234102
small molecules
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:16.234102
nmr
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:16.234102
biotechnology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:16.234102
chemistry natural language processing small molecule nmr biotechnology
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