Other names: prochipdb
A PROkaryotic Chromatin ImmunoPrecipitation DataBase
chip-seq chip-on-chip transcription factors and regulatory sites model organisms literature and language
We developed a method, ChIP-sequencing (ChIP-seq), combining chromatin immunoprecipitation (ChIP) and massively parallel sequencing to identify mammalian DNA sequences bound by transcription factors i ...
Database which collects human and mouse embryonic stem cell related datasets. These datasets cover perturbation (both knock-down and overexpression) and chromatin immunoprecipitation (ChIP) experiment ...
ChIP-seq-based database of human transcription factor binding sites and the topological arrangements of the proteins bound to them.
The Swissregulon Database contains genome-wide annotations of regulatory sites. The predictions are based on Bayesian probabilistic analysis of a combination of input information including i) Experime ...
Transcription factor binding profiles deduced from ChIP-seq or ChIP-chip data
ChIP-Atlas is a web service providing both GUI- and API-based data-mining tools to reveal the architecture of the transcription regulatory landscape.
A comprehensive database for decoding the regulatory transcription co-factors in human and mouse.
A comprehensive database for regulations of human transcription factors and their targets. Transcription factors (TFs) as key regulators could modulate the expression of target genes by binding to sp ...
Curated database to annotate gene promoters identified from ChIP-seq results. Users can search the database based on gene id/symbol, or by specific tissue/cell type and filter results based on any com ...
An Integrated Correlation Network Database for the Identification of CeRNA Axes in Uveal Melanoma.
ChIPBase v2.0 is an open database for studying the transcription factor binding sites and motifs, and decoding the transcriptional regulatory networks of lncRNAs, miRNAs, other ncRNAs and protein-codi ...
CancerCRCdb is a comprehensive database of human core regulatory circuitry.
A database of eukaryotic rRNA primers and primer sets for metabarcoding studies compiled from the literature.
A database of enhancer mediated feed-forward loops for human and mouse.
CpGmotifs is a tool to discover DNA motifs associated to CpG methylation events.
ReMap is an integrative analysis of transcription factor ChIP-seq experiments publicly available, merged with the Encode dataset. The resource is an extensive regulatory catalogue of transcription fac ...
Human Assay-for-Transposase-Accessible Chromatin data
Database of zinc binding sites.
A database of enhancer-associated insertion and deletion variants by analysis of H3K27ac ChIP-Seq. Cancer hallmarks rely on its specific transcriptional programs, which are dysregulated by multiple m ...
Surface Plasmon Resonance Database (SPRD) is a surface plasmon resonance database of common factors for better experimental planning.