ChIP-Seq Transcription Factor Data
Names
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ChIP-Seq Transcription Factor Data
metasource: re3data.org
version: re3data.org: ChIP-Seq Transcription Factor Data; editing status 2021-07-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TW3B last accessed: 2022-11-04
ChIP-Seq
metasource: re3data.org
version: re3data.org: ChIP-Seq Transcription Factor Data; editing status 2021-07-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TW3B last accessed: 2022-11-04
Names
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ChIP-Seq Transcription Factor Data
metasource: re3data.orgversion: re3data.org: ChIP-Seq Transcription Factor Data; editing status 2021-07-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TW3B last accessed: 2022-11-04
ChIP-Seq
metasource: re3data.orgversion: re3data.org: ChIP-Seq Transcription Factor Data; editing status 2021-07-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TW3B last accessed: 2022-11-04
Names
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ChIP-Seq Transcription Factor Data
metasource: re3data.orgversion: re3data.org: ChIP-Seq Transcription Factor Data; editing status 2021-07-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TW3B last accessed: 2022-11-04
ChIP-Seq
metasource: re3data.orgversion: re3data.org: ChIP-Seq Transcription Factor Data; editing status 2021-07-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TW3B last accessed: 2022-11-04
We developed a method, ChIP-sequencing (ChIP-seq), combining chromatin immunoprecipitation (ChIP) and massively parallel sequencing to identify mammalian DNA sequences bound by transcription factors in vivo. We used ChIP-seq to map STAT1 targets in interferon-gamma (IFN-gamma)-stimulated and unstimulated human HeLa S3 cells, and compared the method's performance to ChIP-PCR and to ChIP-chip for four chromosomes.For both Chromatin- immunoprecipation Transcription Factors and Histone modifications. Sequence files and the associated probability files are also provided.
Description
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We developed a method, ChIP-sequencing (ChIP-seq), combining chromatin immunoprecipitation (ChIP) and massively parallel sequencing to identify mammalian DNA sequences bound by transcription factors in vivo. We used ChIP-seq to map STAT1 targets in interferon-gamma (IFN-gamma)-stimulated and unstimulated human HeLa S3 cells, and compared the method's performance to ChIP-PCR and to ChIP-chip for four chromosomes.For both Chromatin- immunoprecipation Transcription Factors and Histone modifications. Sequence files and the associated probability files are also provided.
metasource: re3data.orgversion: re3data.org: ChIP-Seq Transcription Factor Data; editing status 2021-07-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TW3B last accessed: 2022-11-04
Webpage:
http://www.bcgsc.ca/data/chipseq/chip-seq-dataWebpage
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http://www.bcgsc.ca/data/chipseq/chip-seq-data
metasource: re3data.orgversion: re3data.org: ChIP-Seq Transcription Factor Data; editing status 2021-07-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TW3B last accessed: 2022-11-04
Licence:
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other
metasource: re3data.orgversion: re3data.org: ChIP-Seq Transcription Factor Data; editing status 2021-07-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TW3B last accessed: 2022-11-04
Licence URL
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http://www.bcgsc.ca/data/data-release-open-access
metasource: re3data.orgversion: re3data.org: ChIP-Seq Transcription Factor Data; editing status 2021-07-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TW3B last accessed: 2022-11-04
Tags:
Tags
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dna
metasource: re3data.org
version: re3data.org: ChIP-Seq Transcription Factor Data; editing status 2021-07-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TW3B last accessed: 2022-11-04
stat1
metasource: re3data.org
version: re3data.org: ChIP-Seq Transcription Factor Data; editing status 2021-07-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TW3B last accessed: 2022-11-04
chromatin immunoprecipitation
metasource: re3data.org
version: re3data.org: ChIP-Seq Transcription Factor Data; editing status 2021-07-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TW3B last accessed: 2022-11-04
human
metasource: re3data.org
version: re3data.org: ChIP-Seq Transcription Factor Data; editing status 2021-07-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TW3B last accessed: 2022-11-04
interferon
metasource: re3data.org
version: re3data.org: ChIP-Seq Transcription Factor Data; editing status 2021-07-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TW3B last accessed: 2022-11-04
mammals
metasource: re3data.org
version: re3data.org: ChIP-Seq Transcription Factor Data; editing status 2021-07-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TW3B last accessed: 2022-11-04
mouse liver
metasource: re3data.org
version: re3data.org: ChIP-Seq Transcription Factor Data; editing status 2021-07-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TW3B last accessed: 2022-11-04
sequencing
metasource: re3data.org
version: re3data.org: ChIP-Seq Transcription Factor Data; editing status 2021-07-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TW3B last accessed: 2022-11-04
Tags
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dna
metasource: re3data.orgversion: re3data.org: ChIP-Seq Transcription Factor Data; editing status 2021-07-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TW3B last accessed: 2022-11-04
stat1
metasource: re3data.orgversion: re3data.org: ChIP-Seq Transcription Factor Data; editing status 2021-07-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TW3B last accessed: 2022-11-04
chromatin immunoprecipitation
metasource: re3data.orgversion: re3data.org: ChIP-Seq Transcription Factor Data; editing status 2021-07-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TW3B last accessed: 2022-11-04
human
metasource: re3data.orgversion: re3data.org: ChIP-Seq Transcription Factor Data; editing status 2021-07-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TW3B last accessed: 2022-11-04
interferon
metasource: re3data.orgversion: re3data.org: ChIP-Seq Transcription Factor Data; editing status 2021-07-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TW3B last accessed: 2022-11-04
mammals
metasource: re3data.orgversion: re3data.org: ChIP-Seq Transcription Factor Data; editing status 2021-07-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TW3B last accessed: 2022-11-04
mouse liver
metasource: re3data.orgversion: re3data.org: ChIP-Seq Transcription Factor Data; editing status 2021-07-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TW3B last accessed: 2022-11-04
sequencing
metasource: re3data.orgversion: re3data.org: ChIP-Seq Transcription Factor Data; editing status 2021-07-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TW3B last accessed: 2022-11-04
dna stat1 chromatin immunoprecipitation human interferon mammals mouse liver sequencing
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