Host F-Box Protein 22 Enhances the Uptake of Brucella by Macrophages and Drives a Sustained Release of Proinflammatory Cytokines through Degradation of the Anti-Inflammatory Effector Proteins of Brucella.
PMID:35420446
DNA Methylation of Human Choline Kinase Alpha Promoter-Associated CpG Islands in MCF-7 Cells.
PMID:34205960
Synthetic Promoters: Designing the cis Regulatory Modules for Controlled Gene Expression.
PMID:29855997
Chum salmon egg extracts induce upregulation of collagen type I and exert antioxidative effects on human dermal fibroblast cultures.
PMID:27621603
Identification of a Novel C-Terminal Truncated WT1 Isoform with Antagonistic Effects against Major WT1 Isoforms.
PMID:26090994
Evaluation of sgRNA target sites for CRISPR-mediated repression of TP53.
PMID:25398078
The Eukaryotic Promoter Database: expansion of EPDnew and new promoter analysis tools.
PMID:25378343
Pax6 regulates the expression of Dkk3 in murine and human cell lines, and altered responses to Wnt signaling are shown in FlpIn-3T3 cells stably expressing either the Pax6 or the Pax6(5a) isoform.
PMID:25029272
Evolutionarily dynamic alternative splicing of GPR56 regulates regional cerebral cortical patterning.
PMID:24531968
Identification and visualization of stimulus-specific transcriptional activity in cardiac hypertrophy in mice.
PMID:24162179
Epigenetic regulation of organic anion transporting polypeptide 1B3 in cancer cell lines.
PMID:23812637
EPD and EPDnew, high-quality promoter resources in the next-generation sequencing era.
PMID:23193273
Analysis of intron sequence features associated with transcriptional regulation in human genes.
PMID:23082130
Combinatorial motif analysis of regulatory gene expression in Mafb deficient macrophages.
PMID:22784578
Contribution of microRNA-1275 to Claudin11 protein suppression via a polycomb-mediated silencing mechanism in human glioma stem-like cells.
PMID:22736761
DBTSS: DataBase of Transcriptional Start Sites progress report in 2012.
PMID:22086958
Functional characterization of human Kindlin-2 core promoter identifies a key role of SP1 in Kindlin-2 transcriptional regulation.
PMID:21922223
Selective genomic targeting by FRA-2/FOSL2 transcription factor: regulation of the Rgs4 gene is mediated by a variant activator protein 1 (AP-1) promoter sequence/CREB-binding protein (CBP) mechanism.
PMID:21367864
Ensemble approach combining multiple methods improves human transcription start site prediction.
PMID:21118509
Genome-wide detection of a TFIID localization element from an initial human disease mutation.
PMID:21071415
Retinoic acid induces expression of the thyroid hormone transporter, monocarboxylate transporter 8 (Mct8).
PMID:20573951
Gene expression and transcription factor profiling reveal inhibition of transcription factor cAMP-response element-binding protein by gamma-herpesvirus replication and transcription activator.
PMID:20516076
Functional analysis of a novel cis-acting regulatory region within the human ankyrin gene (ANK-1) promoter.
PMID:20479128
Epigenetic histone modifications of human transposable elements: genome defense versus exaptation.
PMID:20226072
Repetitive DNA elements, nucleosome binding and human gene expression.
PMID:19393174
RBF-TSS: identification of transcription start site in human using radial basis functions network and oligonucleotide positional frequencies.
PMID:19287502
A transcription factor affinity-based code for mammalian transcription initiation.
PMID:19141595
Human and mouse switch-like genes share common transcriptional regulatory mechanisms for bimodality.
PMID:19105848
Analysis of gene regulatory networks in the mammalian circadian rhythm.
PMID:18846204
PCA-HPR: a principle component analysis model for human promoter recognition.
PMID:18795109
Finding sequence motifs with Bayesian models incorporating positional information: an application to transcription factor binding sites.
PMID:18533028
Comprehensive detection of human terminal oligo-pyrimidine (TOP) genes and analysis of their characteristics.
PMID:18480124
Prediction for human transcription start site using diversity measure with quadratic discriminant.
PMID:18478087
Genome-wide promoter analysis uncovers portions of the cancer methylome.
PMID:18413733
Profiling the thermodynamic softness of adenoviral promoters.
PMID:18390611
Weak correlation between sequence conservation in promoter regions and in protein-coding regions of human-mouse orthologous gene pairs.
PMID:18384671
The biological function of some human transcription factor binding motifs varies with position relative to the transcription start site.
PMID:18367472
Asap: a framework for over-representation statistics for transcription factor binding sites.
PMID:18286180
Functional annotation of 19,841 Populus nigra full-length enriched cDNA clones.
PMID:18053163
Promoter analysis of intestinal genes induced during iron-deprivation reveals enrichment of conserved SP1-like binding sites.
PMID:18005439
Bioinformatic identification of novel putative photoreceptor specific cis-elements.
PMID:17953763
Lithocholic acid induction of the FGF19 promoter in intestinal cells is mediated by PXR.
PMID:17696253
A collection of 10,096 indica rice full-length cDNAs reveals highly expressed sequence divergence between Oryza sativa indica and japonica subspecies.
PMID:17522955
Transcription of the human cell cycle regulated BUB1B gene requires hStaf/ZNF143.
PMID:17478512
Identification of N-acetyltransferase 2 (NAT2) transcription start sites and quantitation of NAT2-specific mRNA in human tissues.
PMID:17287389
Tissue-specific regulatory elements in mammalian promoters.
PMID:17224917
Characterization and predictive discovery of evolutionarily conserved mammalian alternative promoters.
PMID:17210929
A computational genomics approach to identify cis-regulatory modules from chromatin immunoprecipitation microarray data--a case study using E2F1.
PMID:17053090
L1 antisense promoter drives tissue-specific transcription of human genes.
PMID:16877819
Genome-wide prediction of transcriptional regulatory elements of human promoters using gene expression and promoter analysis data.
PMID:16817975
Periodicity of SNP distribution around transcription start sites.
PMID:16579865
MPromDb: an integrated resource for annotation and visualization of mammalian gene promoters and ChIP-chip experimental data.
PMID:16381984
DBTSS: DataBase of Human Transcription Start Sites, progress report 2006.
PMID:16381981
Comprehensive analysis of transcriptional promoter structure and function in 1% of the human genome.
PMID:16344566
Human promoter genomic composition demonstrates non-random groupings that reflect general cellular function.
PMID:16232321
The distribution of SNPs in human gene regulatory regions.
PMID:16209714
Evidence for a preferential targeting of 3'-UTRs by cis-encoded natural antisense transcripts.
PMID:16204454
Generalizations of Markov model to characterize biological sequences.
PMID:16144548
Transposable elements donate lineage-specific regulatory sequences to host genomes.
PMID:16093685
Genome-wide promoter extraction and analysis in human, mouse, and rat.
PMID:16086854
Large-scale structural analysis of the core promoter in mammalian and plant genomes.
PMID:16049029
Functional analysis of human and chimpanzee promoters.
PMID:15998446
ARGO: a web system for the detection of degenerate motifs and large-scale recognition of eukaryotic promoters.
PMID:15980502
Identification of regulatory targets of tissue-specific transcription factors: application to retina-specific gene regulation.
PMID:15967807
oPOSSUM: identification of over-represented transcription factor binding sites in co-expressed genes.
PMID:15933209
Begin at the beginning: predicting genes with 5' UTRs.
PMID:15867435
Computational technique for improvement of the position-weight matrices for the DNA/protein binding sites.
PMID:15849315
Analysis of small human proteins reveals the translation of upstream open reading frames of mRNAs.
PMID:15489325
Expression profiling of serum inducible genes identifies a subset of SRF target genes that are MKL dependent.
PMID:15329155
Comparative analysis of dioxin response elements in human, mouse and rat genomic sequences.
PMID:15328365
Clustering of DNA sequences in human promoters.
PMID:15256515
BEARR: Batch Extraction and Analysis of cis-Regulatory Regions.
PMID:15215391
PromoSer: improvements to the algorithm, visualization and accessibility.
PMID:15215378
Assessment of clusters of transcription factor binding sites in relationship to human promoter, CpG islands and gene expression.
PMID:15053842
Statistical analysis of over-represented words in human promoter sequences.
PMID:14963262
HemoPDB: Hematopoiesis Promoter Database, an information resource of transcriptional regulation in blood cell development.
PMID:14681365
The Eukaryotic Promoter Database EPD: the impact of in silico primer extension.
PMID:14681364
DBTSS, DataBase of Transcriptional Start Sites: progress report 2004.
PMID:14681363
The German cDNA network: cDNAs, functional genomics and proteomics.
PMID:14649292
Fugu ESTs: new resources for transcription analysis and genome annotation.
PMID:14613980
Dragon gene start finder: an advanced system for finding approximate locations of the start of gene transcriptional units.
PMID:12869582
Dragon Gene Start Finder identifies approximate locations of the 5' ends of genes.
PMID:12824365
PromoSer: A large-scale mammalian promoter and transcription start site identification service.
PMID:12824364
FIE2: A program for the extraction of genomic DNA sequences around the start and translation initiation site of human genes.
PMID:12824363
Comparative genomics of Physcomitrella patens gametophytic transcriptome and Arabidopsis thaliana: implication for land plant evolution.
PMID:12808149
Identification and functional analysis of human transcriptional promoters.
PMID:12566409
Distribution and characterization of regulatory elements in the human genome.
PMID:12466286
Statistical significance of clusters of motifs represented by position specific scoring matrices in nucleotide sequences.
PMID:12136103