R3F890 last accessed: 2022-11-04

virusmentha
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:13.361816

Other names: Virus Mentha, virus mentha, VirusMINT, the interactome browser, virusmentha

VirusMentha is a collection of viral interactions manually curated from protein-protein databases that adhere to the IMEx consortium. This resource offers a series of tools to analyse selected proteins in the context of a network of interactions. virus mentha offers direct access to viral families such as: Orthomyxoviridae, Orthoretrovirinae and Herpesviridae plus, it offers the unique possibility of searching by host organism.

Webpage:

http://virusmentha.uniroma2.it/

Licence:

Name: CC
URL: https://creativecommons.org/licenses/by/2.5/

Publications:

Publications
More detailed information about this field from each metasource.

VirusMentha: a new resource for virus-host protein interactions
PMID: 25217587
metasource: Fairsharing.org
version: FAIRsharing.org: VirusMentha; VirusMentha; DOI: https://doi.org/10.25504/FAIRsharing.6w29qp; Last edited: March 27, 2020, 5:31 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:13.361816

http://dx.doi.org/10.1093/nar/gku830
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

VirusMentha: a new resource for virus-host protein interactions PubMed citations: 62.

62 articles citing: VirusMentha: a new resource for virus-host protein interactions

The Landscape of Virus-Host Protein-Protein Interaction Databases. PMID:35910656
LGCA-VHPPI: A local-global residue context aware viral-host protein-protein interaction predictor. PMID:35789333
Bioinformatics-Based Approaches to Study Virus-Host Interactions During SARS-CoV-2 Infection. PMID:35554909
The Intricacy of the Viral-Human Protein Interaction Networks: Resources, Data, and Analyses. PMID:35531299
Comprehensive characterization of human-virus protein-protein interactions reveals disease comorbidities and potential antiviral drugs. PMID:35356543
Systematic optimization of host-directed therapeutic targets and preclinical validation of repositioned antiviral drugs. PMID:35238349
A Pan-respiratory Antiviral Chemotype Targeting a Transient Host Multiprotein Complex. PMID:34931190
A multitask transfer learning framework for the prediction of virus-human protein-protein interactions. PMID:34837942
Interactome of human and SARS-CoV-2 proteins to identify human hub proteins associated with comorbidities. PMID:34655901
In silico predictions of protein interactions between Zika virus and human host. PMID:34513323
Biomolecule and Bioentity Interaction Databases in Systems Biology: A Comprehensive Review. PMID:34439912
Transfer learning via multi-scale convolutional neural layers for human-virus protein-protein interaction prediction. PMID:34273146
Identification of viral-mediated pathogenic mechanisms in neurodegenerative diseases using network-based approaches. PMID:34237135
Manipulation of Cellular Processes via Nucleolus Hijaking in the Course of Viral Infection in Mammals. PMID:34202380
Prediction of host-pathogen protein interactions by extended network model. PMID:33907496
Multi-schema computational prediction of the comprehensive SARS-CoV-2 vs. human interactome. PMID:33868814
Interactions of HIV-1 Capsid with Host Factors and Their Implications for Developing Novel Therapeutics. PMID:33807824
Comparative Genomics and Integrated Network Approach Unveiled Undirected Phylogeny Patterns, Co-mutational Hot Spots, Functional Cross Talk, and Regulatory Interactions in SARS-CoV-2. PMID:33622851
An Integrated Systems Biology Approach Identifies the Proteasome as A Critical Host Machinery for ZIKV and DENV Replication. PMID:33610792
Data science in unveiling COVID-19 pathogenesis and diagnosis: evolutionary origin to drug repurposing. PMID:33592108
Modification of Nuclear Compartments and the 3D Genome in the Course of a Viral Infection. PMID:33456976
Mass spectrometry-based protein-protein interaction networks for the study of human diseases. PMID:33434350
The IMEx coronavirus interactome: an evolving map of Coronaviridae-host molecular interactions. PMID:33206959
Investigating Core Signaling Pathways of Hepatitis B Virus Pathogenesis for Biomarkers Identification and Drug Discovery via Systems Biology and Deep Learning Method. PMID:32878239
Human Virus Transcriptional Regulators. PMID:32649876
Network-Based Analysis of OMICs Data to Understand the HIV-Host Interaction. PMID:32625189
The IMEx Coronavirus interactome: an evolving map of Coronaviridae-Host molecular interactions. PMID:32587962
Intrinsically disordered regions are abundant in simplexvirus proteomes and display signatures of positive selection. PMID:32411391
The Multifarious Role of 14-3-3 Family of Proteins in Viral Replication. PMID:32294919
Systems biology approach: Panacea for unravelling host-virus interactions and dynamics of vaccine induced immune response. PMID:32289096
Understanding of Zaire ebolavirus-human protein interaction for drug repurposing. PMID:32206696
Temporal dynamics of protein complex formation and dissociation during human cytomegalovirus infection. PMID:32041945
Developing a virus-microRNA interactome using cytoscape. PMID:31993337
Human cytomegalovirus interactome analysis identifies degradation hubs, domain associations and viral protein functions. PMID:31873071
Statistical characteristics of amino acid covariance as possible descriptors of viral genomic complexity. PMID:31804522
MorCVD: A Unified Database for Host-Pathogen Protein-Protein Interactions of Cardiovascular Diseases Related to Microbes. PMID:30858555
Prediction of MicroRNAs in the Epstein-Barr Virus Reveals Potential Targets for the Viral Self-Regulation. PMID:30728633
Gene expression variability across cells and species shapes innate immunity. PMID:30356220
Interface-Based Structural Prediction of Novel Host-Pathogen Interactions. PMID:30298406
Viruses.STRING: A Virus-Host Protein-Protein Interaction Database. PMID:30249048
Impact of viral presence in tumor on gene expression in non-small cell lung cancer. PMID:30134863
Investigating genetic-and-epigenetic networks, and the cellular mechanisms occurring in Epstein-Barr virus-infected human B lymphocytes via big data mining and genome-wide two-sided NGS data identification. PMID:30133498
Protein-protein interactions of human viruses. PMID:30031213
Proteome-wide analysis of human motif-domain interactions mapped on influenza a virus. PMID:29940841
Predicting Interactions between Virus and Host Proteins Using Repeat Patterns and Composition of Amino Acids. PMID:29854357
DenvInt: A database of protein-protein interactions between dengue virus and its hosts. PMID:29049286
Structural host-microbiota interaction networks. PMID:29023448
Protein-Protein Interactions in Virus-Host Systems. PMID:28861068
DenHunt - A Comprehensive Database of the Intricate Network of Dengue-Human Interactions. PMID:27618709
Comparative analysis of housekeeping and tissue-specific driver nodes in human protein interaction networks. PMID:27612563
Computational discovery of Epstein-Barr virus targeted human genes and signalling pathways. PMID:27470517
Editorial: Computational Systems Biology of Pathogen-Host Interactions. PMID:26870002
Cell type-specific properties and environment shape tissue specificity of cancer genes. PMID:26856619
Proteomic approaches to uncovering virus-host protein interactions during the progression of viral infection. PMID:26817613
Uncovering New Pathogen-Host Protein-Protein Interactions by Pairwise Structure Similarity. PMID:26799490
Revealing potential molecular targets bridging colitis and colorectal cancer based on multidimensional integration strategy. PMID:26461477
Computational analysis of protein interaction networks for infectious diseases. PMID:26261187
A review on computational systems biology of pathogen-host interactions. PMID:25914674
Shared resources, shared costs--leveraging biocuration resources. PMID:25776020
Computational approaches for prediction of pathogen-host protein-protein interactions. PMID:25759684
Virus-host interactomics: new insights and opportunities for antiviral drug discovery. PMID:25593595
VirHostNet 2.0: surfing on the web of virus/host molecular interactions data. PMID:25392406
http://dx.doi.org/10.1093/nar/gku830

Tags:

Tags
More detailed information about this field from each metasource.

network model
metasource: Fairsharing.org
version: FAIRsharing.org: VirusMentha; VirusMentha; DOI: https://doi.org/10.25504/FAIRsharing.6w29qp; Last edited: March 27, 2020, 5:31 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

protein
metasource: Fairsharing.org
version: FAIRsharing.org: VirusMentha; VirusMentha; DOI: https://doi.org/10.25504/FAIRsharing.6w29qp; Last edited: March 27, 2020, 5:31 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

protein interaction
metasource: Fairsharing.org
version: FAIRsharing.org: VirusMentha; VirusMentha; DOI: https://doi.org/10.25504/FAIRsharing.6w29qp; Last edited: March 27, 2020, 5:31 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

metabolic and signaling pathways
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

protein-protein interactions
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

covid-19
metasource: re3data.org
version: re3data.org: virus mentha; editing status 2021-09-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3F890 last accessed: 2022-11-04

arabidopsis thaliana
metasource: re3data.org
version: re3data.org: virus mentha; editing status 2021-09-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3F890 last accessed: 2022-11-04

caenorhabditis elegans
metasource: re3data.org
version: re3data.org: virus mentha; editing status 2021-09-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3F890 last accessed: 2022-11-04

drosophila melanogaster
metasource: re3data.org
version: re3data.org: virus mentha; editing status 2021-09-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3F890 last accessed: 2022-11-04

escheria coli k-12
metasource: re3data.org
version: re3data.org: virus mentha; editing status 2021-09-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3F890 last accessed: 2022-11-04

human
metasource: re3data.org
version: re3data.org: virus mentha; editing status 2021-09-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3F890 last accessed: 2022-11-04

molecular genetics
metasource: re3data.org
version: re3data.org: virus mentha; editing status 2021-09-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3F890 last accessed: 2022-11-04

mus musculus
metasource: re3data.org
version: re3data.org: virus mentha; editing status 2021-09-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3F890 last accessed: 2022-11-04

rattus norvegicus
metasource: re3data.org
version: re3data.org: virus mentha; editing status 2021-09-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3F890 last accessed: 2022-11-04

saccharomyces cerevisiae s288c
metasource: re3data.org
version: re3data.org: virus mentha; editing status 2021-09-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3F890 last accessed: 2022-11-04

protein interactions
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:13.361816

virology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:13.361816

network model protein protein interaction metabolic and signaling pathways protein-protein interactions covid-19 caenorhabditis elegans drosophila melanogaster escheria coli k-12 human molecular genetics mus musculus rattus norvegicus saccharomyces cerevisiae s288c protein interaction virology

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mentha

Molecular INTeraction database

Human Protein-Protein Interaction rEference

VirHostNet 2.0

NCBI Virus

Protein Interaction Network Analysis platform

Bacterial Protein Interaction Database

Biological General Repository for Interaction Datasets

Reproducible interactome

Human protein-protein interaction network database search

Database of Interacting Proteins

AtPID

IntAct molecular interaction database

Protein-Protein Interaction Ontology

Influenza Virus Database

DroID - Drosophila Interactions Database

Compartmentalized Protein-Protein Interaction

STRING

TRIP

ViRBase