BioPortal
BioPortal is a library of biomedical ontologies and terminologies developed in Web Ontology Language (OWL), Resource Description Framework (RDF)(S), Open Biological and Biomedical Ontologies (OBO) format, and Protégé frames and Rich Release Format. BioPortal groups ontologies by domain to aid discoverability and allows users to browse, search and visualize the content of ontologies. BioPortal also provides ontology recommendation, text annotation, ontology mapping, and a reference index to resources like PubMed.
Description
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BioPortal is a library of biomedical ontologies and terminologies developed in Web Ontology Language (OWL), Resource Description Framework (RDF)(S), Open Biological and Biomedical Ontologies (OBO) format, and Protégé frames and Rich Release Format. BioPortal groups ontologies by domain to aid discoverability and allows users to browse, search and visualize the content of ontologies. BioPortal also provides ontology recommendation, text annotation, ontology mapping, and a reference index to resources like PubMed.
metasource: Fairsharing.orgversion: FAIRsharing.org: BioPortal; BioPortal; DOI: https://doi.org/10.25504/FAIRsharing.4m97ah; Last edited: Dec. 16, 2020, 1:20 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
BioPortal is an open repository of biomedical ontologies, a service that provides access to those ontologies, and a set of tools for working with them. BioPortal provides a wide range of such tools, either directly via the BioPortal web site, or using the BioPortal web service REST API. BioPortal also includes community features for adding notes, reviews, and even mappings to specific ontologies. BioPortal has four major product components: the web application; the API services; widgets, or applets, that can be installed on your own site; and a Virtual Appliance version that is available for download or through Amazon Web Services machine instance (AMI). There is also a beta release SPARQL endpoint.
metasource: re3data.orgversion: re3data.org: BioPortal; editing status 2022-06-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3J362 last accessed: 2022-11-04
Webpage:
http://bioportal.bioontology.org/Webpage
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http://bioportal.bioontology.org/
metasource: Fairsharing.orgversion: FAIRsharing.org: BioPortal; BioPortal; DOI: https://doi.org/10.25504/FAIRsharing.4m97ah; Last edited: Dec. 16, 2020, 1:20 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
https://bioportal.bioontology.org/
metasource: re3data.orgversion: re3data.org: BioPortal; editing status 2022-06-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3J362 last accessed: 2022-11-04
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metasource: re3data.orgversion: re3data.org: BioPortal; editing status 2022-06-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3J362 last accessed: 2022-11-04
Licence URL
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https://www.bioontology.org/terms
metasource: re3data.orgversion: re3data.org: BioPortal; editing status 2022-06-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3J362 last accessed: 2022-11-04
Publications:
Publications
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BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications
PMID: 21672956
metasource: Fairsharing.org
version: FAIRsharing.org: BioPortal; BioPortal; DOI: https://doi.org/10.25504/FAIRsharing.4m97ah; Last edited: Dec. 16, 2020, 1:20 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Publications
More detailed information about this field from each metasource.
BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications
PMID: 21672956
metasource: Fairsharing.org
version: FAIRsharing.org: BioPortal; BioPortal; DOI: https://doi.org/10.25504/FAIRsharing.4m97ah; Last edited: Dec. 16, 2020, 1:20 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
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BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications
PubMed citations: 234.
234 articles citing: BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications
Correlation Analysis of Variables From the Atherosclerosis Risk in Communities Study. PMID:35899108
Toxoplasma infection in male mice alters dopamine-sensitive behaviors and host gene expression patterns associated with neuropsychiatric disease. PMID:35857765
Common genetic variation associated with Mendelian disease severity revealed through cryptic phenotype analysis. PMID:35760791
Clinical named-entity recognition: A short comparison. PMID:35463810
Ontologies and Knowledge Graphs in Oncology Research. PMID:35454813
Providing Adverse Outcome Pathways from the AOP-Wiki in a Semantic Web Format to Increase Usability and Accessibility of the Content. PMID:35388368
The AOP-DB RDF: Applying FAIR Principles to the Semantic Integration of AOP Data Using the Research Description Framework. PMID:35295213
Regulatory Testing for Endocrine Disruptors; Need for Validated Methods and Integrated Approaches. PMID:35295107
NLIMED: Natural Language Interface for Model Entity Discovery in Biosimulation Model Repositories. PMID:35283794
ECO: the Evidence and Conclusion Ontology, an update for 2022. PMID:34986598
Diversity and molecular network patterns of symptom phenotypes. PMID:34848731
The protein-protein interaction ontology: for better representing and capturing the biological context of protein interaction. PMID:34789143
Building IoT based applications for Smart Cities: How can ontology catalogs help? PMID:34734100
OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies. PMID:34697637
Automatic Knowledge Extraction to build Semantic Web of Things Applications. PMID:34671692
Body composition analysis in patients with acute heart failure: the Scale Heart Failure trial. PMID:34647695
ISA API: An open platform for interoperable life science experimental metadata. PMID:34528664
A Birds-Eye (Re)View of Acid-Suppression Drugs, COVID-19, and the Highly Variable Literature. PMID:34456726
CIDO ontology updates and secondary analysis of host responses to COVID-19 infection based on ImmPort reports and literature. PMID:34454610
Visual comprehension and orientation into the COVID-19 CIDO ontology. PMID:34224898
CROssBAR: comprehensive resource of biomedical relations with knowledge graph representations. PMID:34181736
Precision omics data integration and analysis with interoperable ontologies and their application for COVID-19 research. PMID:34159360
Using ethnographic methods to classify the human experience in medicine: a case study of the presence ontology. PMID:34151988
Status epilepticus after intracranial neurosurgery: incidence and risk stratification by perioperative clinical features. PMID:33990087
IDSM ChemWebRDF: SPARQLing small-molecule datasets. PMID:33980298
Semantic standards of external exposome data. PMID:33901445
"When they say weed causes depression, but it's your fav antidepressant": Knowledge-aware attention framework for relationship extraction. PMID:33764983
Using Word Embeddings to Learn a Better Food Ontology. PMID:33733222
CausalBuilder: bringing the MI2CAST causal interaction annotation standard to the curator. PMID:33547799
An empirical meta-analysis of the life sciences linked open data on the web. PMID:33479214
Automated Identification of Common Disease-Specific Outcomes for Comparative Effectiveness Research Using ClinicalTrials.gov: Algorithm Development and Validation Study. PMID:33460388
UniBioDicts: Unified access to biological dictionaries. PMID:33367853
Knowledge Organization Systems for Systematic Chemical Assessments. PMID:33356525
Obstacles to the reuse of study metadata in ClinicalTrials.gov. PMID:33339830
Outlier concepts auditing methodology for a large family of biomedical ontologies. PMID:33319713
Analysis of readability and structural accuracy in SNOMED CT. PMID:33319711
Missing lateral relationships in top-level concepts of an ontology. PMID:33319709
KGen: a knowledge graph generator from biomedical scientific literature. PMID:33317512
An ontology-based documentation of data discovery and integration process in cancer outcomes research. PMID:33317497
LabPipe: an extensible bioinformatics toolkit to manage experimental data and metadata. PMID:33267792
OMA orthology in 2021: website overhaul, conserved isoforms, ancestral gene order and more. PMID:33174605
The ontology of the anatomy and development of the solitary ascidian Ciona: the swimming larva and its metamorphosis. PMID:33087765
Semantic similarity and machine learning with ontologies. PMID:33049044
A realism-based approach to an ontological representation of symbiotic interactions. PMID:33032576
Ten simple rules for annotating sequencing experiments. PMID:33017400
Developing an ontology for representing the domain knowledge specific to non-pharmacological treatment for agitation in dementia. PMID:32995470
Modelling kidney disease using ontology: insights from the Kidney Precision Medicine Project. PMID:32939051
SCALEUS-FD: A FAIR Data Tool for Biomedical Applications. PMID:32908882
Ontological approach to the knowledge systematization of a toxic process and toxic course representation framework for early drug risk management. PMID:32883995
BiPOm: a rule-based ontology to represent and infer molecule knowledge from a biological process-centered viewpoint. PMID:32703160
Enabling ad-hoc reuse of private data repositories through schema extraction. PMID:32641124
Development of the Gender, Sex, and Sexual Orientation ontology: Evaluation and workflow. PMID:32548638
CIDO, a community-based ontology for coronavirus disease knowledge and data integration, sharing, and analysis. PMID:32533075
Aggregation and analysis of indication-symptom relationships for drugs approved in the USA. PMID:32495081
Advancing systematic-review methodology in exposure science for environmental health decision making. PMID:32467626
Understanding the Acceptability of Subdermal Implants as a Possible New HIV Prevention Method: Multi-Stage Mixed Methods Study. PMID:32348277
BioHackathon 2015: Semantics of data for life sciences and reproducible research. PMID:32308977
Automated Methods Enable Direct Computation on Phenotypic Descriptions for Novel Candidate Gene Prediction. PMID:31998331
STAT: A Web-based Semantic Text Annotation Tool to Assist Building Mental Health Knowledge Base. PMID:31903451
Semantic computational analysis of anticoagulation use in atrial fibrillation from real world data. PMID:31765395
Multidisciplinary Smartphone-Based Interventions to Empower Patients With Acute Coronary Syndromes: Qualitative Study on Health Care Providers' Perspectives. PMID:31758781
Enabling semantic queries across federated bioinformatics databases. PMID:31697362
Dissecting the Shared and Context-Dependent Pathways Mediated by the p140Cap Adaptor Protein in Cancer and in Neurons. PMID:31681758
Annot: a Django-based sample, reagent, and experiment metadata tracking system. PMID:31675914
Comprehensive anatomic ontologies for lung development: A comparison of alveolar formation and maturation within mouse and human lung. PMID:31651362
Enabling Web-scale data integration in biomedicine through Linked Open Data. PMID:31531395
Clinical MetaData ontology: a simple classification scheme for data elements of clinical data based on semantics. PMID:31429750
Ontology-based metabolomics data integration with quality control. PMID:31179719
The Placental Atlas Tool (PAT): A collaborative research and discovery platform for the placental research community. PMID:31103066
The REDCap consortium: Building an international community of software platform partners. PMID:31078660
Ten quick tips for biocuration. PMID:31048830
exRNA Atlas Analysis Reveals Distinct Extracellular RNA Cargo Types and Their Carriers Present across Human Biofluids. PMID:30951672
What's in a cardiomyocyte - And how do we make one through reprogramming? PMID:30922868
How to Develop a Drug Target Ontology: KNowledge Acquisition and Representation Methodology (KNARM). PMID:30848456
The Sublanguage of Clinical Problem Lists: A Corpus Analysis. PMID:30815190
Towards the semantic enrichment of Computer Interpretable Guidelines: a method for the identification of relevant ontological terms. PMID:30815135
How Sustainable are Biomedical Ontologies? PMID:30815087
Integrating an Ontology of Radiology Differential Diagnosis with ICD-10-CM, RadLex, and SNOMED CT. PMID:30706210
Integrating ontologies of human diseases, phenotypes, and radiological diagnosis. PMID:30624645
Mining data and metadata from the gene expression omnibus. PMID:30594974
Identifying Principles for the Construction of an Ontology-Based Knowledge Base: A Case Study Approach. PMID:30578220
Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems. PMID:30576485
MER: a shell script and annotation server for minimal named entity recognition and linking. PMID:30519990
Discovery of Emerging Design Patterns in Ontologies Using Tree Mining. PMID:30505251
MetaHCR: a web-enabled metagenome data management system for hydrocarbon resources. PMID:30212909
Regional Diversity in the Postsynaptic Proteome of the Mouse Brain. PMID:30071621
An ontology-guided semantic data integration framework to support integrative data analysis of cancer survival. PMID:30066664
Creating a Structured AOP Knowledgebase via Ontology-Based Annotations. PMID:30057931
IDPpi: Protein-Protein Interaction Analyses of Human Intrinsically Disordered Proteins. PMID:30002402
FamPlex: a resource for entity recognition and relationship resolution of human protein families and complexes in biomedical text mining. PMID:29954318
Sustainable data and metadata management at the BD2K-LINCS Data Coordination and Integration Center. PMID:29917015
Disease mentions in airport and hospital geolocations expose dominance of news events for disease concerns. PMID:29895320
CDISC SHARE, a Global, Cloud-based Resource of Machine-Readable CDISC Standards for Clinical and Translational Research. PMID:29888049
A guideline for reporting experimental protocols in life sciences. PMID:29868256
Representation of Social History Factors Across Age Groups: A Topic Analysis of Free-Text Social Documentation. PMID:29854185
Complex overlapping concepts: An effective auditing methodology for families of similarly structured BioPortal ontologies. PMID:29852316
The LOINC RSNA radiology playbook - a unified terminology for radiology procedures. PMID:29850823
Extending the DIDEO ontology to include entities from the natural product drug interaction domain of discourse. PMID:29743102
Uniform resolution of compact identifiers for biomedical data. PMID:29737976
YummyData: providing high-quality open life science data. PMID:29688370
Analyzing user interactions with biomedical ontologies: A visual perspective. PMID:29657560
BiOnIC: A Catalog of User Interactions with Biomedical Ontologies. PMID:29637199
Investigating Term Reuse and Overlap in Biomedical Ontologies. PMID:29636656
An ontological approach to identifying cases of chronic kidney disease from routine primary care data: a cross-sectional study. PMID:29636024
Where to search top-K biomedical ontologies? PMID:29579141
South Korean geriatrics on Beers Criteria medications at risk of adverse drug events. PMID:29543860
Semi-supervised identification of cancer subgroups using survival outcomes and overlapping grouping information. PMID:29336210
The eXtensible ontology development (XOD) principles and tool implementation to support ontology interoperability. PMID:29329592
Comparison, alignment, and synchronization of cell line information between CLO and EFO. PMID:29322915
Biotea: semantics for Pubmed Central. PMID:29312824
Taxonomy-Based Approaches to Quality Assurance of Ontologies. PMID:29158885
Identification of Pleiotropic Cancer Susceptibility Variants from Genome-Wide Association Studies Reveals Functional Characteristics. PMID:29150481
WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research. PMID:29136241
Using semantics for representing experimental protocols. PMID:29132408
Drug target ontology to classify and integrate drug discovery data. PMID:29122012
Extending XNAT Platform with an Incremental Semantic Framework. PMID:28912709
A Systematic Analysis of Term Reuse and Term Overlap across Biomedical Ontologies. PMID:28819351
Using Closure Tables to Enable Cross-Querying of Ontologies in Database-Driven Applications. PMID:28725879
Synaptic Interactome Mining Reveals p140Cap as a New Hub for PSD Proteins Involved in Psychiatric and Neurological Disorders. PMID:28713243
Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data. PMID:28662064
Natural Language Processing for EHR-Based Pharmacovigilance: A Structured Review. PMID:28643174
NCBO Ontology Recommender 2.0: an enhanced approach for biomedical ontology recommendation. PMID:28592275
An empirical analysis of ontology reuse in BioPortal. PMID:28583809
Ensembles of NLP Tools for Data Element Extraction from Clinical Notes. PMID:28269947
Exploring biomedical ontology mappings with graph theory methods. PMID:28265499
Developing the Quantitative Histopathology Image Ontology (QHIO): A case study using the hot spot detection problem. PMID:28003147
Machine Learning and Decision Support in Critical Care. PMID:27765959
Introducing the Big Knowledge to Use (BK2U) challenge. PMID:27750400
Name-calling in the hippocampus (and beyond): coming to terms with neuron types and properties. PMID:27747821
Impact of Predicting Health Care Utilization Via Web Search Behavior: A Data-Driven Analysis. PMID:27655225
The health care and life sciences community profile for dataset descriptions. PMID:27602295
Knowledge Discovery from Biomedical Ontologies in Cross Domains. PMID:27548262
Health Concept and Knowledge Management: Twenty-five Years of Evolution. PMID:27488404
Ontology-based Vaccine and Drug Adverse Event Representation and Theory-guided Systematic Causal Network Analysis toward Integrative Pharmacovigilance Research. PMID:27458549
BioWes-from design of experiment, through protocol to repository, control, standardization and back-tracking. PMID:27454467
A scientist's guide for submitting data to ZFIN. PMID:27443940
Publishing FAIR Data: An Exemplar Methodology Utilizing PHI-Base. PMID:27433158
Relational Network for Knowledge Discovery through Heterogeneous Biomedical and Clinical Features. PMID:27427091
The ontology of medically related social entities: recent developments. PMID:27406187
COMODI: an ontology to characterise differences in versions of computational models in biology. PMID:27401413
A unified software framework for deriving, visualizing, and exploring abstraction networks for ontologies. PMID:27345947
A Survey of Bioinformatics Database and Software Usage through Mining the Literature. PMID:27331905
PhenoImageShare: an image annotation and query infrastructure. PMID:27267125
The Orthology Ontology: development and applications. PMID:27259657
The cellular microscopy phenotype ontology. PMID:27195102
BioSharing: curated and crowd-sourced metadata standards, databases and data policies in the life sciences. PMID:27189610
OBIB-a novel ontology for biobanking. PMID:27148435
An Interoperability Platform Enabling Reuse of Electronic Health Records for Signal Verification Studies. PMID:27123451
MD-CTS: An integrated terminology reference of clinical and translational medicine. PMID:27069559
Utilizing a structural meta-ontology for family-based quality assurance of the BioPortal ontologies. PMID:26988001
Constructing a Computer-Aided Differential Diagnosis Engine from Open-Source APIs. PMID:26957291
The Implicitome: A Resource for Rationalizing Gene-Disease Associations. PMID:26919047
Bioinformatics Mining and Modeling Methods for the Identification of Disease Mechanisms in Neurodegenerative Disorders. PMID:26690135
A numerical similarity approach for using retired Current Procedural Terminology (CPT) codes for electronic phenotyping in the Scalable Collaborative Infrastructure for a Learning Health System (SCILHS). PMID:26655696
Using ontologies to model human navigation behavior in information networks: A study based on Wikipedia. PMID:26568745
Next-generation diagnostics and disease-gene discovery with the Exomiser. PMID:26562621
PhenoMiner: from text to a database of phenotypes associated with OMIM diseases. PMID:26507285
ANISEED 2015: a digital framework for the comparative developmental biology of ascidians. PMID:26420834
Recent Advances and Emerging Applications in Text and Data Mining for Biomedical Discovery. PMID:26420781
KneeTex: an ontology-driven system for information extraction from MRI reports. PMID:26347806
Integration of extracellular RNA profiling data using metadata, biomedical ontologies and Linked Data technologies. PMID:26320941
PubChemRDF: towards the semantic annotation of PubChem compound and substance databases. PMID:26175801
SEEK: a systems biology data and model management platform. PMID:26160520
From Peer-Reviewed to Peer-Reproduced in Scholarly Publishing: The Complementary Roles of Data Models and Workflows in Bioinformatics. PMID:26154165
The center for expanded data annotation and retrieval. PMID:26112029
kpath: integration of metabolic pathway linked data. PMID:26055101
Summarizing and visualizing structural changes during the evolution of biomedical ontologies using a Diff Abstraction Network. PMID:26048076
Next generation distributed computing for cancer research. PMID:25983539
An empirically derived taxonomy of errors in SNOMED CT. PMID:25954397
Fostering Multilinguality in the UMLS: A Computational Approach to Terminology Expansion for Multiple Languages. PMID:25954371
Extracting Concepts Related to Homelessness from the Free Text of VA Electronic Medical Records. PMID:25954364
Evaluation of RxNorm for Medication Clinical Decision Support. PMID:25954360
Metabolonote: a wiki-based database for managing hierarchical metadata of metabolome analyses. PMID:25905099
Abstraction networks for terminologies: Supporting management of "big knowledge". PMID:25890687
OTO: Ontology Term Organizer. PMID:25887779
Assessing the impact of case sensitivity and term information gain on biomedical concept recognition. PMID:25790125
Ontology application and use at the ENCODE DCC. PMID:25776021
Cancer based pharmacogenomics network supported with scientific evidences: from the view of drug repurposing. PMID:25729430
Development of data representation standards by the human proteome organization proteomics standards initiative. PMID:25726569
Automatic concept recognition using the human phenotype ontology reference and test suite corpora. PMID:25725061
Gateways to the FANTOM5 promoter level mammalian expression atlas. PMID:25723102
Describing the breakbone fever: IDODEN, an ontology for dengue fever. PMID:25646954
Generation of silver standard concept annotations from biomedical texts with special relevance to phenotypes. PMID:25607983
POEAS: Automated Plant Phenomic Analysis Using Plant Ontology. PMID:25574136
Enabling Ontology Based Semantic Queries in Biomedical Database Systems. PMID:25541585
Annotation of phenotypic diversity: decoupling data curation and ontology curation using Phenex. PMID:25411634
Using the wisdom of the crowds to find critical errors in biomedical ontologies: a study of SNOMED CT. PMID:25342179
Systematic review automation technologies. PMID:25005128
Standardized metadata for human pathogen/vector genomic sequences. PMID:24936976
Ontology for the asexual development and anatomy of the colonial chordate Botryllus schlosseri. PMID:24789338
The cell behavior ontology: describing the intrinsic biological behaviors of real and model cells seen as active agents. PMID:24755304
Toward enhanced pharmacovigilance using patient-generated data on the internet. PMID:24713590
Phevor combines multiple biomedical ontologies for accurate identification of disease-causing alleles in single individuals and small nuclear families. PMID:24702956
The Risa R/Bioconductor package: integrative data analysis from experimental metadata and back again. PMID:24564732
A family-based framework for supporting quality assurance of biomedical ontologies in BioPortal. PMID:24551360
Building a common pediatric research terminology for accelerating child health research. PMID:24534404
Semantic interestingness measures for discovering association rules in the skeletal dysplasia domain. PMID:24499729
BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains. PMID:24495517
The epidemiology ontology: an ontology for the semantic annotation of epidemiological resources. PMID:24438387
A Linked Science Investigation: Enhancing Climate Change Data Discovery with Semantic Technologies. PMID:24416086
The NHGRI GWAS Catalog, a curated resource of SNP-trait associations. PMID:24316577
Diagnosis code assignment: models and evaluation metrics. PMID:24296907
Bioprospecting the Bibleome: Adding Evidence to Support the Inflammatory Basis of Cancer. PMID:24294537
HuPSON: the human physiology simulation ontology. PMID:24267822
The Ontology of Clinical Research (OCRe): an informatics foundation for the science of clinical research. PMID:24239612
The ontology of craniofacial development and malformation for translational craniofacial research. PMID:24124010
The clinical measurement, measurement method and experimental condition ontologies: expansion, improvements and new applications. PMID:24103152
IDOMAL: the malaria ontology revisited. PMID:24034841
inTB - a data integration platform for molecular and clinical epidemiological analysis of tuberculosis. PMID:24001185
TrOn: an anatomical ontology for the beetle Tribolium castaneum. PMID:23936240
Enabling complex queries to drug information sources through functional composition. PMID:23920645
A sense inventory for clinical abbreviations and acronyms created using clinical notes and medical dictionary resources. PMID:23813539
NCBO Technology: Powering semantically aware applications. PMID:23734708
Effects of guideline-based training on the quality of formal ontologies: a randomized controlled trial. PMID:23667440
The MetaboLights repository: curation challenges in metabolomics. PMID:23630246
Preliminary evaluation of the CellFinder literature curation pipeline for gene expression in kidney cells and anatomical parts. PMID:23599415
Content analysis of reporting templates and free-text radiology reports. PMID:23553231
PharmaTrek: A Semantic Web Explorer for Open Innovation in Multitarget Drug Discovery. PMID:23548981
SHRINE: enabling nationally scalable multi-site disease studies. PMID:23533569
Ontology for vector surveillance and management. PMID:23427646
Incorporating expert terminology and disease risk factors into consumer health vocabularies. PMID:23424146
STOP using just GO: a multi-ontology hypothesis generation tool for high throughput experimentation. PMID:23409969
Enabling Ontology Based Semantic Queries in Biomedical Database Systems. PMID:23404054
OntoMaton: a bioportal powered ontology widget for Google Spreadsheets. PMID:23267176
Semantically enabling a genome-wide association study database. PMID:23244533
The plant ontology as a tool for comparative plant anatomy and genomic analyses. PMID:23220694
Accelerating cancer systems biology research through Semantic Web technology. PMID:23188758
A bayesian translational framework for knowledge propagation, discovery, and integration under specific contexts. PMID:22779044
Extending ontologies by finding siblings using set expansion techniques. PMID:22689774
OREMPdb: a semantic dictionary of computational pathway models. PMID:22536973
An ICT infrastructure to integrate clinical and molecular data in oncology research. PMID:22536972
The Stem Cell Discovery Engine: an integrated repository and analysis system for cancer stem cell comparisons. PMID:22121217
The National Center for Biomedical Ontology. PMID:22081220
Gene Expression Atlas update--a value-added database of microarray and sequencing-based functional genomics experiments. PMID:22064864
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bioinformatics
metasource: re3data.org
version: re3data.org: BioPortal; editing status 2022-06-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3J362 last accessed: 2022-11-04
biomedicine
metasource: re3data.org
version: re3data.org: BioPortal; editing status 2022-06-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3J362 last accessed: 2022-11-04
ontology mapping
metasource: re3data.org
version: re3data.org: BioPortal; editing status 2022-06-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3J362 last accessed: 2022-11-04
Tags
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bioinformatics
metasource: re3data.orgversion: re3data.org: BioPortal; editing status 2022-06-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3J362 last accessed: 2022-11-04
biomedicine
metasource: re3data.orgversion: re3data.org: BioPortal; editing status 2022-06-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3J362 last accessed: 2022-11-04
ontology mapping
metasource: re3data.orgversion: re3data.org: BioPortal; editing status 2022-06-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3J362 last accessed: 2022-11-04
bioinformatics biomedicine ontology mapping
Need help integrating and/or managing biomedical data?