Human Proteinpedia
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Human Proteinpedia is a community portal for sharing and integration of human protein data. It allows research laboratories to contribute and maintain protein annotations.
Description
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Human Proteinpedia is a community portal for sharing and integration of human protein data. It allows research laboratories to contribute and maintain protein annotations.
metasource: Fairsharing.orgversion: FAIRsharing.org: Human Proteinpedia; Human Proteinpedia; DOI: https://doi.org/10.25504/FAIRsharing.xxdxtv; Last edited: April 26, 2021, 9:34 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
Community portal for sharing and integration of human proteomic data
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Human Proteinpedia is a community portal for sharing and integration of human protein data. This is a joint project between Pandey at Johns Hopkins University, and Institute of Bioinformatics, Bangalore. This portal allows research laboratories around the world to contribute and maintain protein annotations. Human Protein Reference Database (HPRD) integrates data, that is deposited in Human Proteinpedia along with the existing literature curated information in the context of an individual protein. All the public data contributed to Human Proteinpedia can be queried, viewed and downloaded. Data pertaining to post-translational modifications, protein interactions, tissue expression, expression in cell lines, subcellular localization and enzyme substrate relationships may be deposited.
metasource: re3data.orgversion: re3data.org: Human Proteinpedia; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3V62C last accessed: 2022-11-04
Webpage:
http://www.humanproteinpedia.org/Webpage
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http://www.humanproteinpedia.org/
metasource: Fairsharing.orgversion: FAIRsharing.org: Human Proteinpedia; Human Proteinpedia; DOI: https://doi.org/10.25504/FAIRsharing.xxdxtv; Last edited: April 26, 2021, 9:34 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
http://www.humanproteinpedia.org
metasource: re3data.orgversion: re3data.org: Human Proteinpedia; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3V62C last accessed: 2022-11-04
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other
metasource: re3data.orgversion: re3data.org: Human Proteinpedia; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3V62C last accessed: 2022-11-04
Licence URL
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https://guides.library.jhu.edu/copyright
metasource: re3data.orgversion: re3data.org: Human Proteinpedia; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3V62C last accessed: 2022-11-04
Publications:
Publications
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Human Proteinpedia: a unified discovery resource for proteomics research
PMID: 18948298
metasource: Fairsharing.org
version: FAIRsharing.org: Human Proteinpedia; Human Proteinpedia; DOI: https://doi.org/10.25504/FAIRsharing.xxdxtv; Last edited: April 26, 2021, 9:34 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
Publications
More detailed information about this field from each metasource.
Human Proteinpedia: a unified discovery resource for proteomics research
PMID: 18948298
metasource: Fairsharing.org
version: FAIRsharing.org: Human Proteinpedia; Human Proteinpedia; DOI: https://doi.org/10.25504/FAIRsharing.xxdxtv; Last edited: April 26, 2021, 9:34 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
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Human Proteinpedia: a unified discovery resource for proteomics research
PubMed citations: 41.
41 articles citing: Human Proteinpedia: a unified discovery resource for proteomics research
Databases for Protein-Protein Interactions. PMID:34236665
Human carbonic anhydrases and post-translational modifications: a hidden world possibly affecting protein properties and functions. PMID:32648529
Finding the Keys to the CAR: Identifying Novel Target Antigens for T Cell Redirection Immunotherapies. PMID:31947597
HTS-Net: An integrated regulome-interactome approach for establishing network regulation models in high-throughput screenings. PMID:28949986
Identification of Entry Factors Involved in Hepatitis C Virus Infection Based on Host-Mimicking Short Linear Motifs. PMID:28129350
Data sources for in vivo molecular profiling of human phenotypes. PMID:27599755
Synovial fluid proteome in rheumatoid arthritis. PMID:27274716
Macrophage migration inhibitory factor - a therapeutic target in gallbladder cancer. PMID:26530123
A mass spectrometric-derived cell surface protein atlas. PMID:25894527
Web resources for mass spectrometry-based proteomics. PMID:25721607
Proteomic-based approach to gain insight into reprogramming of THP-1 cells exposed to Leishmania donovani over an early temporal window. PMID:25690103
Host response profile of human brain proteome in toxoplasma encephalitis co-infected with HIV. PMID:25404878
ComPPI: a cellular compartment-specific database for protein-protein interaction network analysis. PMID:25348397
Making proteomics data accessible and reusable: current state of proteomics databases and repositories. PMID:25158685
Unraveling patterns of site-to-site synonymous rates variation and associated gene properties of protein domains and families. PMID:24896293
The Zebrafish GenomeWiki: a crowdsourcing approach to connect the long tail for zebrafish gene annotation. PMID:24578356
Proteomic analysis of human osteoarthritis synovial fluid. PMID:24533825
Differential proteomic analysis of synovial fluid from rheumatoid arthritis and osteoarthritis patients. PMID:24393543
Overexpression of periostin and lumican in esophageal squamous cell carcinoma. PMID:24281036
CEG: a database of essential gene clusters. PMID:24209780
Proteomic profiling of serum samples from chikungunya-infected patients provides insights into host response. PMID:24124767
Quantitative proteomics for identifying biomarkers for Rabies. PMID:23521751
Access guide to human proteinpedia. PMID:23504933
Neurodevelopmental and neuropsychiatric disorders represent an interconnected molecular system. PMID:23439483
Quantitative proteomics for identifying biomarkers for tuberculous meningitis. PMID:23198679
"Prostate cancer proteomics" database. PMID:22649669
The development of selected reaction monitoring methods for targeted proteomics via empirical refinement. PMID:22577014
A dynamic view of domain-motif interactions. PMID:22253583
Quantitative temporal proteomic analysis of human embryonic stem cell differentiation into oligodendrocyte progenitor cells. PMID:21770034
Automatic annotation of experimentally derived, evolutionarily conserved post-translational modifications onto multiple genomes. PMID:21571812
TcoF-DB: dragon database for human transcription co-factors and transcription factor interacting proteins. PMID:20965969
Human protein reference database and human proteinpedia as discovery resources for molecular biotechnology. PMID:20927658
Temporal profiling of the secretome during adipogenesis in humans. PMID:20707391
SILAC-based quantitative proteomic approach to identify potential biomarkers from the esophageal squamous cell carcinoma secretome. PMID:20686364
Comparative proteomics of human embryonic stem cells and embryonal carcinoma cells. PMID:20104618
NetPath: a public resource of curated signal transduction pathways. PMID:20067622
The Negatome database: a reference set of non-interacting protein pairs. PMID:19920129
The Proteomics Identifications database: 2010 update. PMID:19906717
Prediction of candidate primary immunodeficiency disease genes using a support vector machine learning approach. PMID:19801557
A guide to the Proteomics Identifications Database proteomics data repository. PMID:19662629
Human Protein Reference Database--2009 update. PMID:18988627
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protein
metasource: Fairsharing.org
version: FAIRsharing.org: Human Proteinpedia; Human Proteinpedia; DOI: https://doi.org/10.25504/FAIRsharing.xxdxtv; Last edited: April 26, 2021, 9:34 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
human and other vertebrate genomes
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
human orfs
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
bioinformatics
metasource: re3data.org
version: re3data.org: Human Proteinpedia; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3V62C last accessed: 2022-11-04
human proteins
metasource: re3data.org
version: re3data.org: Human Proteinpedia; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3V62C last accessed: 2022-11-04
protein binding
metasource: re3data.org
version: re3data.org: Human Proteinpedia; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3V62C last accessed: 2022-11-04
Tags
More detailed information about this field from each metasource.
protein
metasource: Fairsharing.orgversion: FAIRsharing.org: Human Proteinpedia; Human Proteinpedia; DOI: https://doi.org/10.25504/FAIRsharing.xxdxtv; Last edited: April 26, 2021, 9:34 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
human and other vertebrate genomes
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
human orfs
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
bioinformatics
metasource: re3data.orgversion: re3data.org: Human Proteinpedia; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3V62C last accessed: 2022-11-04
human proteins
metasource: re3data.orgversion: re3data.org: Human Proteinpedia; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3V62C last accessed: 2022-11-04
protein binding
metasource: re3data.orgversion: re3data.org: Human Proteinpedia; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3V62C last accessed: 2022-11-04
protein human and other vertebrate genomes human orfs bioinformatics human proteins protein binding
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