Tag: tissue

Found 28 sources
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Human Protein Atlas

The Human Protein Atlas is program started with the aim to map of all the human proteins in cells, tissues and organs using integration of various omics technologies. It consists of three parts: Tissue Atlas showing the distribution of proteins acros ...


ChEMBL is a manually curated database of bioactive molecules with drug-like properties. It brings together chemical, bioactivity and genomic data to aid the translation of genomic information into effective new drugs.

Open Microscopy Environment eXtensible Markup Language

OME develops open-source software and data format standards for the storage and manipulation of biological microscopy data. It is a joint project between universities, research establishments, industry and the software development community. The purp ...


neXtProt is a comprehensive human-centric discovery platform, offering its users a seamless integration of and navigation through protein-related data.

BBMRI-ERIC Directory

The BBMRI-ERIC Directory is a tool to share aggregate information about biobanks across Europe. The Directory welcomes new biobanks to join and publish information about themselves, including their contact information in the directory. The BBMRI-ERIC ...

Human Physiome Field Markup Language

FieldML is a declarative language for building hierarchical models represented by generalized mathematical fields. FieldML is developed as a data model and accompanying API. FieldML can be used to represent the dynamic 3D geometry and solution fields ...

BioImage Archive

The BioImage Archive stores and distributes biological images that are useful to life-science researchers. Its development will provide data archiving services to the broader bioimaging database community. This includes added-value bioimaging data re ...

Mouse Adult Gross Anatomy Ontology

The Mouse Adult Gross Anatomy ontology also has aliases of 'Mouse Anatomy' or 'Mouse anatomical entity'. The resource is a standard, providing a structured vocabulary for the adult anatomy of the mouse. This ontology is part of the Gene Expression Da ...

A database for spatially resolved transcriptomes

Spatially resolved transcriptomics providing gene expression profiles with positional information is key to tissue function and fundamental to disease pathology. SpatialDB is the first public database that specifically curates spatially resolved tran ...

imaging mz Markup Language

The purpose of imzML is to facilitate the exchange and processing of mass spectrometry imaging data. This website is intended to provide all information neccesary to implement imzML. imzML was developed in the framework of the EU funded project COMPU ...


Three-dimensional Electron Microscopy (3DEM) has become a key experimental method in structural biology for a broad spectrum of biological specimens from molecules to cells. The EMDataResource project provides a unified portal for deposition, retriev ...

TissueNet v.2

Knowledge of the molecular interactions of human proteins within tissues is important for identifying their tissue-specific roles and for shedding light on tissue phenotypes. However, many protein-protein interactions (PPIs) have no tissue-contexts. ...

Genome-wide Integrated Analysis of gene Networks in Tissues 2.0

GIANT2 (Genome-wide Integrated Analysis of gene Networks in Tissues) is an interactive web server that enables biomedical researchers to analyze their proteins and pathways of interest and generate hypotheses in the context of genome-scale functional ...


Planosphere is a Schmidtea mediterranea (freshwater triclad) molecular staging resource and atlas used for comparative studies of embryogenesis and regeneration.


ISA-TAB-Nano specifies the format for representing and sharing information about nanomaterials, small molecules and biological specimens along with their assay characterization data (including metadata, and summary data) using spreadsheet or TAB-deli ...

Tissue Microarray Ontology

Tissue microarrays (TMA) are enormously useful tools for translational research, but incompatibilities in database systems between various researchers and institutions prevent the efficient sharing of data that could help realize their full potential ...

Planarian Anatomy and Developmental Stage Ontology

Anatomy ontology for planaria and terms specific to the developmental stages of the planarian Schmidtea mediterranea. As the regenerative flatworm Schmidtea mediterranea gains popularity as a developmental research organism the need for standard nome ...

FAANG metadata sample specification standard

The FAANG metadata sample specification document describes the principles and structure for the FAANG metadata guidance. The main goal of the FAANG standards is to ensure all FAANG samples are well described and that the description is well structure ...


Chickspress is a gene expression database for chicken tissues. Chickspress incorporates both NCBI and Ensembl gene models and links these gene sets with experimental gene expression data and QTL information. By linking gene models from both NCBI and ...

Manchester Eye Tissue Repository

Collection of samples and data across the following diseases: Degenerative disorder of macula (disorder). Repository of post mortem donor eye tissue collected after removal of the corneas for transplantation. It has been established particularly for ...

Epilepsy Society Brain and Tissue Bank

Collection of samples and data across the following diseases: Epilepsy (disorder) The Epilepsy Society Brain and Tissue Bank is a recently established tissue bank at the Institute of Neurology, which has ethical approval and is supported by the Epile ...

Multiple Sclerosis and Parkinson's Tissue Bank

Collection of samples and data across the following diseases: Multiple sclerosis (disorder),Parkinson's disease. The Multiple Sclerosis and Parkinson's Tissue Bank is a national collection of CNS tissue samples donated by individuals with multiple sc ...

interNational Anaplastic Thyroid Cancer Tissue Bank (iNATT)

Collection of samples and data across the following diseases: Malignant tumour of thyroid gland (disorder) The primary objective is to establish an international anaplastic thyroid cancer tissue collection to facilitate research. Patients have the op ...

Breast tissue cell lines

List of cell lines derived from breast tissue, both normal and pathological. The ontology in built in OWL with cross relation to classes- genetic variation, pathological condition, genes, chemicals and drugs.

Uniprot Tissues controlled vocabulary

The UniProt Tissue List is a controlled vocabulary of terms used to annotate biological tissues in the "TISSUE" topic of the RC line type. It also contains cross-references to other ontologies where tissue types are specified.

LifeMap Discovery

LifeMap Discovery® is a compendium of embryonic development for stem cell research and regenerative medicine, constructed by integrating extensive molecular, cellular, anatomical and medical data curated from scientific literature and high-throughput ...


SimTK is a free project-hosting platform for the biomedical computation community that enables researchers to easily share their software, data, and models and provides the infrastructure so they can support and grow a community around their projects ...

Cancer Genomics Hub

>>>>!!!!<<<< The Cancer Genomics Hub mission is now completed. The Cancer Genomics Hub was established in August 2011 to provide a repository to The Cancer Genome Atlas, the childhood cancer initiative Therapeutically Applicable Research to Generate ...

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