T-BAS

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T-BAS

metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:51.830160

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t-bas

metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:51.830160

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Other names: t-bas

Tree-Based Alignment Selector toolkit for phylogenetic-based placement, alignment downloads and metadata visualization.

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Publications:

Publications

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T-BAS: Tree-Based Alignment Selector toolkit for phylogenetic-based placement, alignment downloads and metadata visualization: an example with the Pezizomycotina tree of life
PMID: 28003260

metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:51.830160

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• T-BAS: Tree-Based Alignment Selector toolkit for phylogenetic-based placement, alignment downloads and metadata visualization: an example with the Pezizomycotina tree of life PubMed citations: 14.

  14 articles citing: T-BAS: Tree-Based Alignment Selector toolkit for phylogenetic-based placement, alignment downloads and metadata visualization: an example with the Pezizomycotina tree of life

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  Turnover of Lecanoroid Mycobionts and Their Trebouxia Photobionts Along an Elevation Gradient in Bolivia Highlights the Role of Environment in Structuring the Lichen Symbiosis. PMID:34987486

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  Seed Banks as Incidental Fungi Banks: Fungal Endophyte Diversity in Stored Seeds of Banana Wild Relatives. PMID:33841366

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  Effect of Host, Environment and Fungal Growth on Fungal Leaf Endophyte Communities in Taiwan. PMID:33114080

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  Pathogenomics Characterization of an Emerging Fungal Pathogen, Fusarium oxysporum f. sp. lycopersici in Greenhouse Tomato Production Systems. PMID:32973719

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  Soil-borne fungi influence seed germination and mortality, with implications for coexistence of desert winter annual plants. PMID:31671129

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  Biocontrol Strains Differentially Shift the Genetic Structure of Indigenous Soil Populations of Aspergillus flavus. PMID:31417528

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  T-BAS Version 2.1: Tree-Based Alignment Selector Toolkit for Evolutionary Placement of DNA Sequences and Viewing Alignments and Specimen Metadata on Curated and Custom Trees. PMID:31320426

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  Secondary Metabolite Dereplication and Phylogenetic Analysis Identify Various Emerging Mycotoxins and Reveal the High Intra-Species Diversity in Aspergillus flavus. PMID:31024476

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  Multi-locus DNA sequence analysis, antifungal agent susceptibility, and fungal keratitis outcome in horses from Southeastern United States. PMID:30921394

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  Phylogenetic taxon definitions for Fungi, Dikarya, Ascomycota and Basidiomycota. PMID:30622884

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  A novel proof of concept for capturing the diversity of endophytic fungi preserved in herbarium specimens. PMID:30455213

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  Sequence-based nomenclature: a reply to Thines et al. and Zamora et al. and provisions for an amended proposal "from the floor" to allow DNA sequences as types of names. PMID:30018879

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  Formal description of sequence-based voucherless Fungi: promises and pitfalls, and how to resolve them. PMID:30018876

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  Global population structure and adaptive evolution of aflatoxin-producing fungi. PMID:29152206

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phylogenetics

metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:51.830160

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nucleic acid structure analysis

metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:51.830160

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data visualisation

metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:51.830160

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phylogenetics nucleic acid structure analysis data visualisation