Base interactions in RNA structures
structure nucleic acid structure
A database of 3D RNA fragments within known RNA structures
Small molecule inhibitors of RNA
The known occurrences of non-canonical base-base interactions in RNA are tabulated in the NCIR (http://prion.bchs.uh.edu/bp_type/) database. Currently, there are over 1700 entries including those from ...
RNA structural modules and their interactions
Packing of RNA molecules and complexes
The Nucleic Acids Database contains information about experimentally-determined nucleic acids and complex assemblies. NDB can be used to perform searches based on annotations relating to sequence, str ...
RNA Characterization of Secondary Structure Motifs (RNA CoSSMos) database allows the systematic searching of all catalogued three-dimensional nucleic acid PDB structures that contain secondary structu ...
G-quadruplex motifs and potentially G-quadruplex regulated genes
Prediction of viral microRNA candidate hairpins
Nearest Neighbor parameters for predicting RNA folding
RNA SSTRAND contains known secondary structures of any type and organism. The ultimate goal of this database is to incorporate a comprehensive collection of known secondary structures, and to provide ...
Predicted structures of internal transcribed spacer 2 (ITS2)
Conformational features of DNA
Within this database you will to able to find more than 12,000 extracted three-dimensional junction and kissing loop structures as well as detailed annotations for each.
MINAS contains the exact geometric information on the first and second-shell coordinating ligands of every metal ion present in nucleic acid structures that are deposited in the PDB and NDB. Containin ...
Database for binding affinities of protein-nucleic acid complexes and their mutants.
NAPP (Nucleic Acids Phylogenetic Profile) enables users to retrieve RNA-rich clusters from any genome in a list of 1000+ sequenced bacterial genomes. RNA-rich clusters can be viewed separately or, alt ...
The Database of Macromolecular Movements (MolMovDB) contains a collection of animated protein and RNA structures to assist in the exploration of macromolecular flexibility. Software for structure anal ...
Molecular Modeling of RNA Structure-From Base Pair Analysis in Crystals to Structure Prediction.
SPRITE is a protein structural motif database searching program. Users can upload a PDB file of a query protein structure, and SPRITE compares the input coordinates to a database of 3D side chain arra ...