Other names: rnabpdb
Molecular Modeling of RNA Structure-From Base Pair Analysis in Crystals to Structure Prediction.
rna nucleic acid structure analysis structure prediction small molecule
A repository of cleaned PDB-derived RNA 3D structures.
Database designed to provide a comprehensive perspective and understanding of RNA motif structure, function, tertiary interactions and their relationships.
RNA Characterization of Secondary Structure Motifs (RNA CoSSMos) database allows the systematic searching of all catalogued three-dimensional nucleic acid PDB structures that contain secondary structu ...
The RNA Modification Database contains information pertaining to naturally occurring RNA modifications. The database employs an easy-to-use, searchable interface for obtaining detailed data on the 109 ...
RNA aptamer 3D-structural modeling database.
The Molecular Modeling Database (MMDB), as part of the Entrez system, facilitates access to structure data by connecting them with associated literature, protein and nucleic acid sequences, chemicals, ...
A database of potential ligand binding sites in the human proteome.
Predicted structures of internal transcribed spacer 2 (ITS2)
The Database of Macromolecular Movements (MolMovDB) contains a collection of animated protein and RNA structures to assist in the exploration of macromolecular flexibility. Software for structure anal ...
A database of RNA multiloops.
The Nucleic Acids Database contains information about experimentally-determined nucleic acids and complex assemblies. NDB can be used to perform searches based on annotations relating to sequence, str ...
An intuitive database of RNA pocket topology information with RNA-ligand data resources.
Nearest Neighbor parameters for predicting RNA folding
Small molecule inhibitors of RNA
Structural Atlas of Human Genome
RNAO is a controlled vocabulary pertaining to RNA function and based on RNA sequences, secondary and three-dimensional structures. The central aim of the RNA Ontology Consortium (ROC) is to develop an ...
Database for binding affinities of protein-nucleic acid complexes and their mutants.
Conformational features of DNA
NAPP (Nucleic Acids Phylogenetic Profile) enables users to retrieve RNA-rich clusters from any genome in a list of 1000+ sequenced bacterial genomes. RNA-rich clusters can be viewed separately or, alt ...
Base interactions in RNA structures