SCOR
Database designed to provide a comprehensive perspective and understanding of RNA motif structure, function, tertiary interactions and their relationships.
Description
More detailed information about this field from each metasource.
Database designed to provide a comprehensive perspective and understanding of RNA motif structure, function, tertiary interactions and their relationships.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:36.360449
Webpage:
http://scor.berkeley.edu/Webpage
More detailed information about this field from each metasource.
Publications:
Publications
More detailed information about this field from each metasource.
SCOR: Structural Classification of RNA, version 2.0
PMID: 14681389
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:36.360449
SCOR: a Structural Classification of RNA database
PMID: 11752346
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:36.360449
Publications
More detailed information about this field from each metasource.
SCOR: Structural Classification of RNA, version 2.0
PMID: 14681389
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:36.360449
SCOR: a Structural Classification of RNA database
PMID: 11752346
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:36.360449
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SCOR: Structural Classification of RNA, version 2.0
PubMed citations: 52.
52 articles citing: SCOR: Structural Classification of RNA, version 2.0
RR3DD: an RNA global structure-based RNA three-dimensional structural classification database. PMID:34663179
LocalSTAR3D: a local stack-based RNA 3D structural alignment tool. PMID:32496533
RNA CoSSMos 2.0: an improved searchable database of secondary structure motifs in RNA three-dimensional structures. PMID:31950189
bpRNA: large-scale automated annotation and analysis of RNA secondary structure. PMID:29746666
Effect of single-residue bulges on RNA double-helical structures: crystallographic database analysis and molecular dynamics simulation studies. PMID:29032448
UQlust: combining profile hashing with linear-time ranking for efficient clustering and analysis of big macromolecular data. PMID:28031034
Cellular Delivery of RNA Nanoparticles. PMID:27509068
InterRNA: a database of base interactions in RNA structures. PMID:26553798
STAR3D: a stack-based RNA 3D structural alignment tool. PMID:26184875
Annotating RNA motifs in sequences and alignments. PMID:25520192
RASS: a web server for RNA alignment in the joint sequence-structure space. PMID:24831547
Evolutionary Origin and Conserved Structural Building Blocks of Riboswitches and Ribosomal RNAs: Riboswitches as Probable Target Sites for Aminoglycosides Interaction. PMID:24754005
RNA Bricks--a database of RNA 3D motifs and their interactions. PMID:24220091
Automated classification of RNA 3D motifs and the RNA 3D Motif Atlas. PMID:23970545
RNA global alignment in the joint sequence-structure space using elastic shape analysis. PMID:23585278
SETTER: web server for RNA structure comparison. PMID:22693209
HD-RNAS: An Automated Hierarchical Database of RNA Structures. PMID:22529851
MINAS--a database of Metal Ions in Nucleic AcidS. PMID:22096233
Self-replication reactions dependent on tertiary interaction motifs in an RNA ligase ribozyme. PMID:22080218
Clustering RNA structural motifs in ribosomal RNAs using secondary structural alignment. PMID:21976732
RAG: an update to the RNA-As-Graphs resource. PMID:21627789
Solution structure of RNase P RNA. PMID:21531920
WebFR3D--a server for finding, aligning and analyzing recurrent RNA 3D motifs. PMID:21515634
Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-A resolution. PMID:20980660
Structural characterization of naturally occurring RNA single mismatches. PMID:20876693
RNAMotifScan: automatic identification of RNA structural motifs using secondary structural alignment. PMID:20696653
Quantifying the relationship between sequence and three-dimensional structure conservation in RNA. PMID:20550657
iPARTS: an improved tool of pairwise alignment of RNA tertiary structures. PMID:20507908
Modeling RNA loops using sequence homology and geometric constraints. PMID:20427516
Sequence-structure relationships in RNA loops: establishing the basis for loop homology modeling. PMID:19923230
Do conformational biases of simple helical junctions influence RNA folding stability and specificity? PMID:19850914
A CA(+) pair adjacent to a sheared GA or AA pair stabilizes size-symmetric RNA internal loops. PMID:19485416
SARA: a server for function annotation of RNA structures. PMID:19483098
Finding 3D motifs in ribosomal RNA structures. PMID:19158187
RsiteDB: a database of protein binding pockets that interact with RNA nucleotide bases. PMID:18953028
Analysis and classification of RNA tertiary structures. PMID:18824509
RNA STRAND: the RNA secondary structure and statistical analysis database. PMID:18700982
SARSA: a web tool for structural alignment of RNA using a structural alphabet. PMID:18502774
Prediction of interacting single-stranded RNA bases by protein-binding patterns. PMID:18452949
RNAJunction: a database of RNA junctions and kissing loops for three-dimensional structural analysis and nanodesign. PMID:17947325
Evaluating and learning from RNA pseudotorsional space: quantitative validation of a reduced representation for RNA structure. PMID:17707400
Informatics challenges in structured RNA. PMID:17611237
RNA localization signals: deciphering the message with bioinformatics. PMID:17452113
RNA-binding proteins that inhibit RNA virus infection. PMID:17360619
The building blocks and motifs of RNA architecture. PMID:16713707
Nucleic acid visualization with UCSF Chimera. PMID:16478715
Structure and dynamics of phosphate linkages and sugars in an abasic hexaloop RNA hairpin. PMID:16326914
Detecting protein-induced folding of the U4 snRNA kink-turn by single-molecule multiparameter FRET measurements. PMID:16199764
RNA structure: the long and the short of it. PMID:15963891
The application of cluster analysis in the intercomparison of loop structures in RNA. PMID:15769871
RAG: RNA-As-Graphs web resource. PMID:15238163
Three-dimensional motifs from the SCOR, structural classification of RNA database: extruded strands, base triples, tetraloops and U-turns. PMID:15121895 -
SCOR: a Structural Classification of RNA database
PubMed citations: 50.
50 articles citing: SCOR: a Structural Classification of RNA database
Graph Theoretical Methods and Workflows for Searching and Annotation of RNA Tertiary Base Motifs and Substructures. PMID:34445259
RNA CoSSMos 2.0: an improved searchable database of secondary structure motifs in RNA three-dimensional structures. PMID:31950189
Identification and Characterization of New RNA Tetraloop Sequence Families. PMID:31714066
RMalign: an RNA structural alignment tool based on a novel scoring function RMscore. PMID:30961545
Modifying inter-cistronic sequence significantly enhances IRES dependent second gene expression in bicistronic vector: Construction of optimised cassette for gene therapy of familial hypercholesterolemia. PMID:30891532
RNArchitecture: a database and a classification system of RNA families, with a focus on structural information. PMID:29069520
Mapping the Universe of RNA Tetraloop Folds. PMID:28673616
RNABP COGEST: a resource for investigating functional RNAs. PMID:25776022
Automated and fast building of three-dimensional RNA structures. PMID:23071898
HD-RNAS: An Automated Hierarchical Database of RNA Structures. PMID:22529851
Prediction of dinucleotide-specific RNA-binding sites in proteins. PMID:22373260
Novel base triples in RNA structures revealed by graph theoretical searching methods. PMID:22373013
RNA CoSSMos: Characterization of Secondary Structure Motifs--a searchable database of secondary structure motifs in RNA three-dimensional structures. PMID:22127861
RAG: an update to the RNA-As-Graphs resource. PMID:21627789
Solution structure of RNase P RNA. PMID:21531920
ModeRNA: a tool for comparative modeling of RNA 3D structure. PMID:21300639
Analysis of electric moments of RNA-binding proteins: implications for mechanism and prediction. PMID:21284850
Structural characterization of naturally occurring RNA single mismatches. PMID:20876693
FRASS: the web-server for RNA structural comparison. PMID:20553602
iPARTS: an improved tool of pairwise alignment of RNA tertiary structures. PMID:20507908
Arrangement of 3D structural motifs in ribosomal RNA. PMID:20159997
Identification of catalytic metal ion ligands in ribozymes. PMID:19651216
The structural basis for recognition of the PreQ0 metabolite by an unusually small riboswitch aptamer domain. PMID:19261617
Structure-function analysis of the ribozymes of chrysanthemum chlorotic mottle viroid: a loop-loop interaction motif conserved in most natural hammerheads. PMID:19043070
Annotation of tertiary interactions in RNA structures reveals variations and correlations. PMID:18957492
SARSA: a web tool for structural alignment of RNA using a structural alphabet. PMID:18502774
RNAJunction: a database of RNA junctions and kissing loops for three-dimensional structural analysis and nanodesign. PMID:17947325
Programmed ribosomal frameshifting in SIV is induced by a highly structured RNA stem-loop. PMID:17868691
Informatics challenges in structured RNA. PMID:17611237
DIAL: a web server for the pairwise alignment of two RNA three-dimensional structures using nucleotide, dihedral angle and base-pairing similarities. PMID:17567620
RNABC: forward kinematics to reduce all-atom steric clashes in RNA backbone. PMID:17401565
Conformational specificity of non-canonical base pairs and higher order structures in nucleic acids: crystal structure database analysis. PMID:17124630
Structural analysis of the catalytic core of human telomerase RNA by FRET and molecular modeling. PMID:17073451
Statistical analysis of RNA backbone. PMID:17048391
XRate: a fast prototyping, training and annotation tool for phylo-grammars. PMID:17018148
The NMR structure of an internal loop from 23S ribosomal RNA differs from its structure in crystals of 50s ribosomal subunits. PMID:17002278
Nucleic acid visualization with UCSF Chimera. PMID:16478715
MeRNA: a database of metal ion binding sites in RNA structures. PMID:16381830
MAO: a Multiple Alignment Ontology for nucleic acid and protein sequences. PMID:16043635
Comparative 3-D modeling of tmRNA. PMID:15958166
Structural RNA has lower folding energy than random RNA of the same dinucleotide frequency. PMID:15840812
The application of cluster analysis in the intercomparison of loop structures in RNA. PMID:15769871
A probabilistic model for the evolution of RNA structure. PMID:15507142
Abstract shapes of RNA. PMID:15371549
Three-dimensional motifs from the SCOR, structural classification of RNA database: extruded strands, base triples, tetraloops and U-turns. PMID:15121895
Representation, searching and discovery of patterns of bases in complex RNA structures. PMID:14703124
SCOR: Structural Classification of RNA, version 2.0. PMID:14681389
3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures. PMID:12930962
Microenvironment analysis and identification of magnesium binding sites in RNA. PMID:12888505
Rfam: an RNA family database. PMID:12520045
Tags:
Tags
More detailed information about this field from each metasource.
rna
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:36.360449
nucleic acid structure analysis
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:36.360449
functional, regulatory and non-coding rna
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:36.360449
structure prediction
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:36.360449
nmr
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:36.360449
Tags
More detailed information about this field from each metasource.
rna
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:36.360449
nucleic acid structure analysis
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:36.360449
functional, regulatory and non-coding rna
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:36.360449
structure prediction
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:36.360449
nmr
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:36.360449
rna nucleic acid structure analysis functional, regulatory and non-coding rna structure prediction nmr
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