Other names: rnaloops
A database of RNA multiloops.
rna chemistry nucleic acid structure analysis protein structural motifs and surfaces structure prediction
A repository of cleaned PDB-derived RNA 3D structures.
RNA Characterization of Secondary Structure Motifs (RNA CoSSMos) database allows the systematic searching of all catalogued three-dimensional nucleic acid PDB structures that contain secondary structu ...
A database that collects tetrads, quadruplexes, and G4-helices found in PDB-deposited structures of nucleic acids. It stores their sequences, secondary and tertiary structures, and motif-specific desc ...
A database of 3D RNA fragments within known RNA structures
Biomolecule Stretching Database
Molecular Modeling of RNA Structure-From Base Pair Analysis in Crystals to Structure Prediction.
The Nucleic Acids Database contains information about experimentally-determined nucleic acids and complex assemblies. NDB can be used to perform searches based on annotations relating to sequence, str ...
Database of Dna REgulatory Motifs and motifs modules predicted from DNase I hypersensitive sites in 349 human cell and tissue samples.
Database of proteins classified by their functional surfaces.
Conformational features of DNA
Protein Topology Graph library: Secondary structure-based protein topologies
An expanded database and web-based tool for structural analysis of DNA-protein complexes. A Database and Web Tool for Structural Analysis of DNA-Protein Complexes. DNAproDB automatically lays out nu ...
RNA structural modules and their interactions
An intuitive database of RNA pocket topology information with RNA-ligand data resources.
SPRITE is a protein structural motif database searching program. Users can upload a PDB file of a query protein structure, and SPRITE compares the input coordinates to a database of 3D side chain arra ...
Database designed to provide a comprehensive perspective and understanding of RNA motif structure, function, tertiary interactions and their relationships.
Nearest Neighbor parameters for predicting RNA folding
Database for binding affinities of protein-nucleic acid complexes and their mutants.
A3D Database is a database for structure-based protein aggregation predictions for the human proteome
The Database of Macromolecular Movements (MolMovDB) contains a collection of animated protein and RNA structures to assist in the exploration of macromolecular flexibility. Software for structure anal ...