Multiple Alignment using Fast Fourier Transform

Names
More detailed information about this field from each metasource.

Multiple Alignment using Fast Fourier Transform
metasource: Fairsharing.org
version: None

MAFFT
metasource: Fairsharing.org
version: None

Other names: MAFFT

MAFFT (Multiple Alignment using Fast Fourier Transform) is a high speed multiple sequence alignment program which implements the Fast Fourier Transform (FFT) to optimise protein alignments based on the physical properties of the amino acids. The program uses progressive alignment and iterative alignment. MAFFT is useful for hard-to-align sequences such as those containing large gaps (e.g., rRNA sequences containing variable loop regions).

Webpage:

https://mafft.cbrc.jp/alignment/software/

Publications:

Publications
More detailed information about this field from each metasource.

MAFFT multiple sequence alignment software version 7: improvements in performance and usability
PMID: 23329690
metasource: Fairsharing.org
version: None

MAFFT multiple sequence alignment software version 7: improvements in performance and usability PubMed citations: 9999.

9999 articles citing: MAFFT multiple sequence alignment software version 7: improvements in performance and usability

Dissection of valine-glutamine genes and their responses to drought stress in Arachis hypogaea cv. Tifrunner. PMID:35366145
High viral loads: what drives fatal cases of COVID-19 in vaccinees? - an autopsy study. PMID:35365771
Relationships Between Soil Microbial Diversities Across an Aridity Gradient in Temperate Grasslands : Soil Microbial Diversity Relationships. PMID:35364696
Comparative Analysis of Codon Bias in the Chloroplast Genomes of Theaceae Species. PMID:35360853
Reticulate Evolution in AA-Genome Wild Rice in Australia. PMID:35360335
Haplotype Analysis of Chloroplast Genomes for Jujube Breeding. PMID:35360311
Phylogeography of ancient and modern brown bears from eastern Eurasia. PMID:35359699
The complete chloroplast genome of halophyte Kalidium foliatum (Pall.) Moq., a dominant species of desert grassland. PMID:35356794
Characterization of the complete chloroplast genome of Achnatherum pekinense (Poaceae), a widespread weed. PMID:35356792
The complete chloroplast genome of Atriplex gmelinii C. A. Mey. ex Bong. (Amaranthaceae). PMID:35356788
Molecular Characterization of a New Moniliformis sp. From a Plateau Zokor (Eospalax fontanierii baileyi) in China. PMID:35356531
Linking genomic and epidemiologic information to advance the study of COVID-19. PMID:35354824
A beginner's guide to manual curation of transposable elements. PMID:35354491
Characterization of Escherichia coli harboring colibactin genes (clb) isolated from beef production and processing systems. PMID:35351927
Phylogeographic relationships and the evolutionary history of the Carassius auratus complex with a newly born homodiploid raw fish (2nNCRC). PMID:35350975
The emergence and transmission dynamics of HIV-1 CRF07_BC in Mainland China. PMID:35350472
Untangling population structure and genetic diversity of reticulocyte binding protein 2b (PvRBP2b) erythrocytic stage vaccine candidate in worldwide Plasmodium vivax isolates. PMID:35349608
Phylogenomic analysis of Syngnathidae reveals novel relationships, origins of endemic diversity and variable diversification rates. PMID:35346180
Integrated phylogenomics and fossil data illuminate the evolution of beetles. PMID:35345430
The complete chloroplast genome sequence of Spiraea×vanhouttei (Briot) Zabel (Rosaceae). PMID:35342798
Exploring interactions between Beauveria and Metarhizium strains through co-inoculation and responses of perennial ryegrass in a one-year trial. PMID:35341038
Genomic Characterisation of UFJF_PfDIW6: A Novel Lytic Pseudomonas fluorescens-Phage with Potential for Biocontrol in the Dairy Industry. PMID:35337036
Molecular Epidemiology of SARS-CoV-2 in Tunisia (North Africa) through Several Successive Waves of COVID-19. PMID:35337031
On the Origin and Propagation of the COVID-19 Outbreak in the Italian Province of Trento, a Tourist Region of Northern Italy. PMID:35336987
Alphacoronavirus in a Daubenton's Myotis Bat (Myotis daubentonii) in Sweden. PMID:35336963
Cytolytic Properties and Genome Analysis of Rigvir® Oncolytic Virotherapy Virus and Other Echovirus 7 Isolates. PMID:35336934
Spatiotemporal Dynamics, Evolutionary History and Zoonotic Potential of Moroccan H9N2 Avian Influenza Viruses from 2016 to 2021. PMID:35336916
In-Flight Transmission of a SARS-CoV-2 Lineage B.1.617.2 Harbouring the Rare S:E484Q Immune Escape Mutation. PMID:35336908
Analysis of Genomic Characteristics of SARS-CoV-2 in Italy, 29 January to 27 March 2020. PMID:35336879
Analyses of Long-Term Epidemic Trends and Evolution Characteristics of Haplotype Subtypes Reveal the Dynamic Selection on SARS-CoV-2. PMID:35336862
Cryptic Prophages Contribution for Campylobacter jejuni and Campylobacter coli Introgression. PMID:35336092
Morphological, Behavioral, and Molecular Characterization of Avian Schistosomes (Digenea: Schistosomatidae) in the Native Snail Chilina dombeyana (Chilinidae) from Southern Chile. PMID:35335656
The haplotype-resolved chromosome pairs of a heterozygous diploid African cassava cultivar reveal novel pan-genome and allele-specific transcriptome features. PMID:35333302
Genomic signatures of high-altitude adaptation and chromosomal polymorphism in geladas. PMID:35332281
Comprehensive identification and expression analysis of CRY gene family in Gossypium. PMID:35331129
Timaviella dunensis sp. nov. from sand dunes of the Baltic Sea, Germany, and emendation of Timaviella edaphica (Elenkin) O.M. Vynogr. & Mikhailyuk (Synechococcales, Cyanobacteria) based on an integrative approach. PMID:35330967
Colletotrichum Species Associated with Peaches in China. PMID:35330315
Phylogenomics and Comparative Genomics Highlight Specific Genetic Features in Ganoderma Species. PMID:35330313
A Barcode-Based Phylogenetic Characterization of Phytophthora cactorum Identifies Two Cosmopolitan Lineages with Distinct Host Affinities and the First Report of Phytophthora pseudotsugae in California. PMID:35330305
Selection of Polymorphic Patterns Obtained by RAPD-PCR through Qualitative and Quantitative Analyses to Differentiate Aspergillus fumigatus. PMID:35330298
Rubinosporusauriporus gen. et sp. nov. (Boletaceae: Xerocomoideae) from Tropical Forests of Thailand, Producing Unusual Dark Ruby Spore Deposits. PMID:35330280
New Species and New Records of Otidea from China Based on Molecular and Morphological Data. PMID:35330274
New Species of Mallocybe and Pseudosperma from North China. PMID:35330258
Genome Sequencing and Analysis of Trichoderma (Hypocreaceae) Isolates Exhibiting Antagonistic Activity against the Papaya Dieback Pathogen, Erwinia mallotivora. PMID:35330248
New Species of Aspergillus (Aspergillaceae) from Tropical Islands of China. PMID:35330227
Functional Classification and Characterization of the Fungal Glycoside Hydrolase 28 Protein Family. PMID:35330219
Neotropical Studies on Hymenochaetaceae: Unveiling the Diversity and Endemicity of Phellinotus. PMID:35330218
Diversity of Ophiostomatoid Fungi Associated with Dendroctonus armandi Infesting Pinus armandii in Western China. PMID:35330216
A Fast-Growing Oleaginous Strain of Coelastrella Capable of Astaxanthin and Canthaxanthin Accumulation in Phototrophy and Heterotrophy. PMID:35330084
Identification of Potential Genes Encoding Protein Transporters in Arabidopsis thaliana Glucosinolate (GSL) Metabolism. PMID:35330077
AutoCoEv-A High-Throughput In Silico Pipeline for Predicting Inter-Protein Coevolution. PMID:35328772
The Complete Mitochondrial Genome of the Chicken Body Louse, Menacanthus cornutus, and Evolutionary Patterns of Extensive Gene Rearrangements in the Mitochondrial Genomes of Amblycera (Psocodea: Phthiraptera). PMID:35328076
Decoding the Gene Variants of Two Native Probiotic Lactiplantibacillus plantarum Strains through Whole-Genome Resequencing: Insights into Bacterial Adaptability to Stressors and Antimicrobial Strength. PMID:35327997
SINE-Based Phylogenomics Reveal Extensive Introgression and Incomplete Lineage Sorting in Myotis. PMID:35327953
Detection of a Novel Chlamydia Species in Invasive Turtles. PMID:35327181
Molecular Detection of Malpighamoeba mellificae in Honey Bees. PMID:35324875
The Genomics and Population Genomics of the Light Brown Apple Moth, Epiphyas postvittana, an Invasive Tortricid Pest of Horticulture. PMID:35323562
Comparative Analysis of Mitochondrial Genomes among Twelve Sibling Species of the Genus Atkinsoniella Distant, 1908 (Hemiptera: Cicadellidae: Cicadellinae) and Phylogenetic Analysis. PMID:35323552
Exploring mitogenome evolution in Branchiopoda (Crustacea) lineages reveals gene order rearrangements in Cladocera. PMID:35322086
Genome wide study of cysteine rich receptor like proteins in Gossypium sp. PMID:35318409
Phylotranscriptomic insights into a Mesoproterozoic-Neoproterozoic origin and early radiation of green seaweeds (Ulvophyceae). PMID:35318329
Phylogenomic analyses of echinoid diversification prompt a re-evaluation of their fossil record. PMID:35315317
Molecular basis of cycloheximide resistance in the Ophiostomatales revealed. PMID:35314878
Selection drives convergent gene expression changes during transitions to co-sexuality in haploid sexual systems. PMID:35314785
Novel functional insights into a modified sugar-binding protein from Synechococcus MITS9220. PMID:35314715
Development of two species of the Trypanosoma theileri complex in tabanids. PMID:35313955
Comparative plastome analysis of Musaceae and new insights into phylogenetic relationships. PMID:35313810
Penicillium Ochrochloron RLS11 Secretome Containing Carbohydrate-Active Enzymes Improves Commercial Enzyme Mixtures During Sugarcane Straw Saccharification. PMID:35312974
Complete mitochondrial genome of Parnassius glacialis (Lepidoptera: Papilionidae). PMID:35311210
Characterization of the complete chloroplast genome of Fibraurea recisa Pierre 1885 (Menispermaceae), an important medicinal herb from Yunnan, China. PMID:35311209
The complete chloroplast genome of Calohypnum plumiforme (Wilson) (hypanceae, bryophyta). PMID:35311207
The complete chloroplast genome of Chimonobambusa utilis (Keng) P. C. Keng, known as 'the king of bamboo shoots'. PMID:35311203
Aberrant newborn T cell and microbiota developmental trajectories predict respiratory compromise during infancy. PMID:35310935
Integrated Transcriptomics and Proteomics to Reveal Regulation Mechanism and Evolution of SmWRKY61 on Tanshinone Biosynthesis in Salvia miltiorrhiza and Salvia castanea. PMID:35309951
Genomic Snapshot of SARS-CoV-2 in Migrants Entering Through Mediterranean Sea Routes. PMID:35309205
Whole-Genome Sequencing of SARS-CoV-2 Infection in a Cluster of Immunocompromised Children in Indonesia. PMID:35308495
Adaptive changes of the autosomal part of the genome in a dioecious clade of Silene. PMID:35306886
Automatic identification and annotation of MYB gene family members in plants. PMID:35305581
A global microbiome survey of vineyard soils highlights the microbial dimension of viticultural terroirs. PMID:35304890
Mitogenomics provides new insights into the phylogenetic relationships and evolutionary history of deep-sea sea stars (Asteroidea). PMID:35304532
Bacterial microbiome of faecal samples of naked mole-rat collected from the toilet chamber. PMID:35303951
HIV-1 infections with multiple founders associate with the development of neutralization breadth. PMID:35303045
Strain-level characterization of broad host range mobile genetic elements transferring antibiotic resistance from the human microbiome. PMID:35301310
Comparative transcriptomics of wild and commercial Citrus during early ripening reveals how domestication shaped fruit gene expression. PMID:35300613
Chromosome-Scale Assembly of the Dendrobium nobile Genome Provides Insights Into the Molecular Mechanism of the Biosynthesis of the Medicinal Active Ingredient of Dendrobium. PMID:35299950
A new lineage of non-photosynthetic green algae with extreme organellar genomes. PMID:35296310
Phylogeny of Merlin's grass (Isoetaceae): revealing an "Amborella syndrome" and the importance of geographic distribution for understanding current and historical diversity. PMID:35296231
The complete chloroplast genome of Clematis florida Thunb. (Ranunculaceae), an ornamental and medicinal plant from Henan province, China. PMID:35295912
The complete chloroplast genome of Periploca forrestii (Apocynaceae), a traditional Chinese medicinal plant. PMID:35295911
Characterizing the complete chloroplast genome of the Impatiens davidii (Balsaminaceae). PMID:35295910
The complete mitochondrial genomes of Ephemera serica (Ephemeroptera: Ephemeridae) and phylogenetic analysis. PMID:35295906
Two Unrecorded Apiospora Species Isolated from Marine Substrates in Korea with Eight New Combinations (A. piptatheri and A. rasikravindrae). PMID:35291593
Phylogenomic analyses highlight innovation and introgression in the continental radiations of Fagaceae across the Northern Hemisphere. PMID:35288565
Oxidative metabolisms catalyzed Earth's oxygenation. PMID:35288554
Comparative analysis of complete Ilex (Aquifoliaceae) chloroplast genomes: insights into evolutionary dynamics and phylogenetic relationships. PMID:35287585
Isolation and transcriptome analysis of a biotechnologically promising Black Sea protist, Thraustochytrium aureum ssp. strugatskii. PMID:35287351
Infundibulicybe trachyspora, a New Species from Northeastern China Based on Morphology and Molecular Phylogeny. PMID:35286493
Comparative and Phylogenetic Analysis Based on the Chloroplast Genome of Coleanthus subtilis (Tratt.) Seidel, a Protected Rare Species of Monotypic Genus. PMID:35283921
DNA Barcoding and Phylogenomic Analysis of the Genus Fritillaria in China Based on Complete Chloroplast Genomes. PMID:35283910
Highly Resolved Papilionoid Legume Phylogeny Based on Plastid Phylogenomics. PMID:35283880
Molecular Epidemiology and Transmission Dynamics of the HIV-1 Epidemic in Ethiopia: Epidemic Decline Coincided With Behavioral Interventions Before ART Scale-Up. PMID:35283836
Comparative chloroplast genome analysis of medicinally important Veratrum (Melanthiaceae) in China: Insights into genomic characterization and phylogenetic relationships. PMID:35281123
Recurrent Co-Option and Recombination of Cytokine and Three Finger Proteins in Multiple Reproductive Tissues Throughout Salamander Evolution. PMID:35281090
Comparative genome sequence and phylogenetic analysis of chloroplast for evolutionary relationship among Pinus species. PMID:35280541
Detection of Herpesviruses in Wild Bird Casualties in Slovenia. PMID:35280151
A near-chromosome level genome assembly of the European hoverfly, Sphaerophoria rueppellii (Diptera: Syrphidae), provides comparative insights into insecticide resistance-related gene family evolution. PMID:35279098
The expanded inhibitor of apoptosis gene family in oysters possesses novel domain architectures and may play diverse roles in apoptosis following immune challenge. PMID:35279090
Chromosome-level genome assembly, annotation, and phylogenomics of the gooseneck barnacle Pollicipes pollicipes. PMID:35277961
DNA- and RNA-based bacterial communities and geochemical zonation under changing sediment porewater dynamics on the Aldabra Atoll. PMID:35277525
Structural analysis of 3'UTRs in insect flaviviruses reveals novel determinants of sfRNA biogenesis and provides new insights into flavivirus evolution. PMID:35277507
Gut Microbiome and Metabolome Variations in Self-Identified Muscle Builders Who Report Using Protein Supplements. PMID:35276896
Trait Energy and Fatigue May Be Connected to Gut Bacteria among Young Physically Active Adults: An Exploratory Study. PMID:35276824
d-Serine controls epidermal vesicle release via NMDA receptor, allowing tissue migration during the metamorphosis of the chordate Ciona. PMID:35275721
The complete chloroplast genome sequence of Trigonotis peduncularis (Boraginaceae). PMID:35274042
The complete mitochondrial genome of Pheidole nodus (Smith, 1874) (Hymenoptera: Formicidae). PMID:35274040
A mitochondrial genome assembly of the opal chimaera, Chimaera opalescens Luchetti, Iglésias et Sellos 2011, using PacBio HiFi long reads. PMID:35274036
Characteristics of Antibiotic Resistance Genes and Antibiotic-Resistant Bacteria in Full-Scale Drinking Water Treatment System Using Metagenomics and Culturing. PMID:35273579
Structure of the decoy module of human glycoprotein 2 and uromodulin and its interaction with bacterial adhesin FimH. PMID:35273390
The core and accessory Hfq interactomes across Pseudomonas aeruginosa lineages. PMID:35273147
Exposure to Trypanosoma parasites induces changes in the microbiome of the Chagas disease vector Rhodnius prolixus. PMID:35272716
Resistomes and microbiome of meat trimmings and colon content from culled cows raised in conventional and organic production systems. PMID:35272712
Plastid Phylogenomic Analysis of Tordylieae Tribe (Apiaceae, Apioideae). PMID:35270181
Transcriptome Profiling and Functional Validation of RING-Type E3 Ligases in Halophyte Sesuvium verrucosum under Salinity Stress. PMID:35269961
The Plastome Sequences of Triticum sphaerococcum (ABD) and Triticum turgidum subsp. durum (AB) Exhibit Evolutionary Changes, Structural Characterization, Comparative Analysis, Phylogenomics and Time Divergence. PMID:35269924
Chemotaxonomic Classification of Peucedanum japonicum and Its Chemical Correlation with Peucedanum praeruptorum, Angelica decursiva, and Saposhnikovia divaricata by Liquid Chromatography Combined with Chemometrics. PMID:35268776
Mismatches between Morphology and DNA in Italian Partridges May Not Be Explained Only by Recent Artificial Release of Farm-Reared Birds. PMID:35268110
Genetic structure and diversity of the Chilean flat oyster Ostrea chilensis (Bivalvia: Ostreidae) along its natural distribution from natural beds subject to different fishing histories. PMID:35266950
Chromosome-level genome assembly of a xerophytic plant, Haloxylon ammodendron. PMID:35266513
Species Identification in Plant-Associated Prokaryotes and Fungi Using DNA. PMID:35265781
Identification of multiple TAR DNA binding protein retropseudogene lineages during the evolution of primates. PMID:35264686
Breaking the limits - multichromosomal structure of an early eudicot Pulsatilla patens mitogenome reveals extensive RNA-editing, longest repeats and chloroplast derived regions among sequenced land plant mitogenomes. PMID:35264098
Diversification Rate is Associated with Rate of Molecular Evolution in Ray-Finned Fish (Actinopterygii). PMID:35262772
SARS-CoV-2 loads in urine, sera and stool specimens in association with clinical features of COVID-19 patients. PMID:35262032
Detection of the novel SARS-CoV-2 European lineage B.1.177 in Ontario, Canada. PMID:35261998
Overexpression of the Tectona grandis TgNAC01 regulates growth, leaf senescence and confer salt stress tolerance in transgenic tobacco plants. PMID:35261823
Quaternary geomorphological and climatic changes associated with the diversification of Iberian freshwater fishes: The case of the genus Cobitis (Cypriniformes, Cobitidae). PMID:35261740
Amplicon_sorter: A tool for reference-free amplicon sorting based on sequence similarity and for building consensus sequences. PMID:35261737
Divergence time estimation using ddRAD data and an isolation-with-migration model applied to water vole populations of Arvicola. PMID:35260719
Plastome phylogenomics and historical biogeography of aquatic plant genus Hydrocharis (Hydrocharitaceae). PMID:35260081
LRR-protein RNH1 dampens the inflammasome activation and is associated with COVID-19 severity. PMID:35256513
The complete plastomes of seven Peucedanum plants: comparative and phylogenetic analyses for the Peucedanum genus. PMID:35255817
Genetic and lipidomic analyses suggest that Nostoc punctiforme, a plant-symbiotic cyanobacterium, does not produce sphingolipids. PMID:35252750
The complete chloroplast genome of Caroxylon passerinum (Chenopodiaceae), an annual desert plant. PMID:35252576
The complete chloroplast genome sequence of Corylopsis sinensis (Hamamelidaceae). PMID:35252573
The complete chloroplast genome of Rubus lambertianus var. paykouangensis, an edible wild plant. PMID:35252572
Evolution and Taxonomic Significance of Seed Micromorphology in Impatiens (Balsaminaceae). PMID:35251107
Substantive Morphological Descriptions, Phylogenetic Analysis and Single Nucleotide Polymorphisms of Aspergillus Species From Foeniculum vulgare. PMID:35250948
RNA Virus Diversity in Birds and Small Mammals From Qinghai-Tibet Plateau of China. PMID:35250920
Virome and Blood Meal-Associated Host Responses in Ixodes persulcatus Naturally Fed on Patients. PMID:35250897
Pharmacological Evaluation of Melanocortin 2 Receptor Accessory Protein 2 on Axolotl Neural Melanocortin Signaling. PMID:35250878
Genome-wide identification and characterization of the TIFY gene family in kiwifruit. PMID:35247966
Homotypic protection against influenza in a pediatric cohort in Managua, Nicaragua. PMID:35246548
Cellular assays identify barriers impeding iron-sulfur enzyme activity in a non-native prokaryotic host. PMID:35244541
Population-Genomic Analysis Identifies a Low Rate of Global Adaptive Fixation in the Proteins of the Cyclical Parthenogen Daphnia magna. PMID:35244177
TreeTuner: A pipeline for minimizing redundancy and complexity in large phylogenetic datasets. PMID:35243369
Identification of CCp5 and FNPA as Novel Non-canonical Members of the CCp Protein Family in Babesia bovis. PMID:35242841
Comparative Genomics and Characterization of SARS-CoV-2 P.1 (Gamma) Variant of Concern From Amazonas, Brazil. PMID:35242782
Limited genomic reconstruction of SARS-CoV-2 transmission history within local epidemiological clusters. PMID:35242361
A time-series meta-transcriptomic analysis reveals the seasonal, host, and gender structure of mosquito viromes. PMID:35242359
Novel Insights Into Refugia at the Southern Margin of the Distribution Range of the Endangered Species Ulmus laevis. PMID:35242155
Integrative Genomics Sheds Light on Evolutionary Forces Shaping the Acidithiobacillia Class Acidophilic Lifestyle. PMID:35242113
Implementation of a COVID-19 Genomic Surveillance Regional Network for Latin America and Caribbean region. PMID:35239677
Amino acid sensor conserved from bacteria to humans. PMID:35238638
Food-Grade Expression of Manganese Peroxidases in Recombinant Kluyveromyces lactis and Degradation of Aflatoxin B1 Using Fermentation Supernatants. PMID:35237243
The Runaway Evolution of SARS-CoV-2 Leading to the Highly Evolved Delta Strain. PMID:35234869
The ER membrane complex (EMC) can functionally replace the Oxa1 insertase in mitochondria. PMID:35231030
Deep-sequence phylogenetics to quantify patterns of HIV transmission in the context of a universal testing and treatment trial - BCPP/Ya Tsie trial. PMID:35229714
Microbial Consortiums of Putative Degraders of Low-Density Polyethylene-Associated Compounds in the Ocean. PMID:35229650
Probiotic normalization of systemic inflammation in siblings of type 1 diabetes patients: an open-label pilot study. PMID:35228584
Full-length transcriptome analysis of multiple organs and identification of adaptive genes and pathways in Mikania micrantha. PMID:35228580
Anaerobic derivates of mitochondria and peroxisomes in the free-living amoeba Pelomyxa schiedti revealed by single-cell genomics. PMID:35227266
Incomplete Hydrogenation by Geranylgeranyl Reductase from a Proteobacterial Phototroph Halorhodospira halochloris, Resulting in the Production of Bacteriochlorophyll with a Tetrahydrogeranylgeranyl Tail. PMID:35225690
The complete chloroplast genome of Rubus ellipticus var. obcordatus, an edible and medicinal dual-purpose plant. PMID:35224199
The complete chloroplast genome of Chimonobambusa angustifolia C. D. Chu et C. S. Chao, a fiber and bamboo shoot species in Poaceae. PMID:35224196
The complete chloroplast genome sequence of Ficus concinna (Moraceae) from Sichuan province. PMID:35224193
Trypanosoma Species in Small Nonflying Mammals in an Area With a Single Previous Chagas Disease Case. PMID:35223545
Spatial and temporal coevolution of N2 neuraminidase and H1 and H3 hemagglutinin genes of influenza A virus in US swine. PMID:35223081
The complete chloroplast genomes of three Hamamelidaceae species: Comparative and phylogenetic analyses. PMID:35222983
Candidate-species delimitation in Desmognathus salamanders reveals gene flow across lineage boundaries, confounding phylogenetic estimation and clarifying hybrid zones. PMID:35222955
Diversity and Ecological Guild Analysis of the Oil Palm Fungal Microbiome Across Root, Rhizosphere, and Soil Compartments. PMID:35222328
Freshwater Microbial Eukaryotic Core Communities, Open-Water and Under-Ice Specialists in Southern Victoria Island Lakes (Ekaluktutiak, NU, Canada). PMID:35222298
Proposal of Two New Combinations, Twenty New Species, Four New Genera, One New Family, and One New Order for the Anamorphic Basidiomycetous Yeast Species in Ustilaginomycotina. PMID:35222295
Neomonodictysaquatica sp. nov. (Pleurotheciaceae) from a plateau lake in Yunnan Province, China. PMID:35221750
Phylogenomics of paleoendemic lampshade spiders (Araneae, Hypochilidae, Hypochilus), with the description of a new species from montane California. PMID:35221748
Island hoppers: Integrative taxonomic revision of Hogna wolf spiders (Araneae, Lycosidae) endemic to the Madeira islands with description of a new species. PMID:35221746
The novel genus, 'Candidatus Phosphoribacter', previously identified as Tetrasphaera, is the dominant polyphosphate accumulating lineage in EBPR wastewater treatment plants worldwide. PMID:35217776
Genomic Bootstrap Barcodes and Their Application to Study the Evolution of Sarbecoviruses. PMID:35216033
Transkingdom Analysis of the Female Reproductive Tract Reveals Bacteriophages form Communities. PMID:35216023
Improved Subtyping of Avian Influenza Viruses Using an RT-qPCR-Based Low Density Array: 'Riems Influenza a Typing Array', Version 2 (RITA-2). PMID:35216008
Detecting Selection in the HIV-1 Genome during Sexual Transmission Events. PMID:35215999
In Silico Prediction and Selection of Target Sequences in the SARS-CoV-2 RNA Genome for an Antiviral Attack. PMID:35215977
A Highly Divergent Hepacivirus Identified in Domestic Ducks Further Reveals the Genetic Diversity of Hepaciviruses. PMID:35215964
Metagenome-Assembled Viral Genomes Analysis Reveals Diversity and Infectivity of the RNA Virome of Gerbillinae Species. PMID:35215951
Full Genome of batCoV/MinFul/2018/SriLanka, a Novel Alpha-Coronavirus Detected in Miniopterus fuliginosus, Sri Lanka. PMID:35215931
Characterization of a Novel Mycovirus from the Phytopathogenic Fungus Botryosphaeria dothidea. PMID:35215923
Evidence of a Possible Viral Host Switch Event in an Avipoxvirus Isolated from an Endangered Northern Royal Albatross (Diomedea sanfordi). PMID:35215898
Clinical Tick-Borne Encephalitis in a Roe Deer (Capreolus capreolus L.). PMID:35215891
Computational Analysis of Mutations in the Receptor-Binding Domain of SARS-CoV-2 Spike and Their Effects on Antibody Binding. PMID:35215888
Discovery and Evolutionary Analysis of a Novel Bat-Borne Paramyxovirus. PMID:35215881
Epidemiology and Genetic Analysis of SARS-CoV-2 in Myanmar during the Community Outbreaks in 2020. PMID:35215852
Viromes of Freshwater Fish with Lacustrine and Diadromous Life Histories Differ in Composition. PMID:35215850
Rapid Biosensor of SARS-CoV-2 Using Specific Monoclonal Antibodies Recognizing Conserved Nucleocapsid Protein Epitopes. PMID:35215848
Species Fowl aviadenovirus B Consists of a Single Serotype despite Genetic Distance of FAdV-5 Isolates. PMID:35215844
Characterization of a Novel Double-Stranded RNA Virus from Phytophthora pluvialis in New Zealand. PMID:35215841
Three Novel Bacteriophages, J5a, F16Ba, and z1a, Specific for Bacillus anthracis, Define a New Clade of Historical Wbeta Phage Relatives. PMID:35215807
Assessment of Inter-Laboratory Differences in SARS-CoV-2 Consensus Genome Assemblies between Public Health Laboratories in Australia. PMID:35215779
Was It Chikungunya? Laboratorial and Clinical Investigations of Cases Occurred during a Triple Arboviruses' Outbreak in Rio de Janeiro, Brazil. PMID:35215188
Transcriptomic Analysis of Fish Hosts Responses to Nervous Necrosis Virus. PMID:35215144
An Exploratory Study on the Microbiome of Northern and Southern Populations of Ixodes scapularis Ticks Predicts Changes and Unique Bacterial Interactions. PMID:35215074
Gene-rich germline-restricted chromosomes in black-winged fungus gnats evolved through hybridization. PMID:35213540
Transcription Factors Evolve Faster Than Their Structural Gene Targets in the Flavonoid Pigment Pathway. PMID:35212724
Informative RNA base embedding for RNA structural alignment and clustering by deep representation learning. PMID:35211670
Analysis of the Complete Plastomes of 31 Species of Hoya Group: Insights Into Their Comparative Genomics and Phylogenetic Relationships. PMID:35211136
Expansion of Cyclophyllidea Biodiversity in Rodents of Qinghai-Tibet Plateau and the "Out of Qinghai-Tibet Plateau" Hypothesis of Cyclophyllideans. PMID:35211102
Examination of the generic concept and species boundaries of the genus Erioscyphella (Lachnaceae, Helotiales, Ascomycota) with the proposal of new species and new combinations based on the Japanese materials. PMID:35210921
A new species of Bundoksia Lucañas, 2021 with comments on its subfamilial placement, based on morphological and molecular data. PMID:35210908
Genomic Diversity of SARS-CoV-2 in Algeria and North African Countries: What We Know So Far and What We Expect? PMID:35208920
Phylogenetic Revision and Patterns of Host Specificity in the Fungal Subphylum Entomophthoromycotina. PMID:35208711
Diversity and Phylogeny of Novel Cord-Forming Fungi from Borneo. PMID:35208694
Comparative Genomic Analyses of the Genus Nesterenkonia Unravels the Genomic Adaptation to Polar Extreme Environments. PMID:35208688
Effect of Bifidobacterium bifidum on Clinical Characteristics and Gut Microbiota in Attention-Deficit/Hyperactivity Disorder. PMID:35207715
Diversity and Molecular Evolution of Odorant Receptor in Hemipteran Insects. PMID:35206787
A Mitochondrial Genome Phylogeny of Cleridae (Coleoptera, Cleroidea). PMID:35206692
Taxonomy and Phylogeny of Novel and Extant Taxa in Pleosporales Associated with Mangifera indica from Yunnan, China (Series I). PMID:35205906
Monitoring of Host Suitability and Defense-Related Genes in Wheat to Bipolaris sorokiniana. PMID:35205903
Unraveling the Genome Sequence of Plant Growth Promoting Aspergillus niger (CSR3) Provides Insight into the Synthesis of Secondary Metabolites and Its Comparative Genomics. PMID:35205861
Salinity Gradient Controls Microbial Community Structure and Assembly in Coastal Solar Salterns. PMID:35205428
Was the Last Bacterial Common Ancestor a Monoderm after All? PMID:35205421
A New Approach Using Targeted Sequence Capture for Phylogenomic Studies across Cactaceae. PMID:35205394
Evaluating the Conservation Status of a North-Western Iberian Earthworm (Compostelandrilus cyaneus) with Insight into Its Genetic Diversity and Ecological Preferences. PMID:35205381
Conservation Genomics of Two Threatened Subspecies of Northern Giraffe: The West African and the Kordofan Giraffe. PMID:35205265
Horizontal Transposon Transfer and Its Implications for the Ancestral Ecology of Hydrophiine Snakes. PMID:35205262
Comparative Analysis of Mitochondrial Genomes in Two Subspecies of the Sunwatcher Toad-Headed Agama (Phrynocephalus helioscopus): Prevalent Intraspecific Gene Rearrangements in Phrynocephalus. PMID:35205248
Doublecortin in the Fish Visual System, a Specific Protein of Maturing Neurons. PMID:35205114
Host-Specific Parasites Reveal the History and Biogeographical Contacts of Their Hosts: The Monogenea of Nearctic Cyprinoid Fishes. PMID:35205096
Genomic Changes within a Subset of IncI2 Plasmids Associated with Dissemination of mcr-1 Genes and Other Important Antimicrobial Resistance Determinants. PMID:35203784
Black-spotted pond frog Pelophylax nigromaculatus as a new host for the renal coccidian genus Hyaloklossia (Alveolata: Apicomplexa). PMID:35198372
Seroprevalence, Prevalence, and Genomic Surveillance: Monitoring the Initial Phases of the SARS-CoV-2 Pandemic in Betim, Brazil. PMID:35197952
Goodyeramedogensis (Orchidaceae), a new species from Tibet, China. PMID:35197721
Genomic assessment of quarantine measures to prevent SARS-CoV-2 importation and transmission. PMID:35197443
Altered gut microbiota composition with antibiotic treatment impairs functional recovery after traumatic peripheral nerve crush injury in mice: effects of probiotics with butyrate producing bacteria. PMID:35197129
IMA Genome - F16 : Draft genome assemblies of Fusarium marasasianum, Huntiella abstrusa, two Immersiporthe knoxdaviesiana isolates, Macrophomina pseudophaseolina, Macrophomina phaseolina, Naganishia randhawae, and Pseudocercospora cruenta. PMID:35197126
Spread of Gamma (P.1) Sub-Lineages Carrying Spike Mutations Close to the Furin Cleavage Site and Deletions in the N-Terminal Domain Drives Ongoing Transmission of SARS-CoV-2 in Amazonas, Brazil. PMID:35196783
Diversity of Pseudomonas aeruginosa Temperate Phages. PMID:35196122
Using natural history to guide supervised machine learning for cryptic species delimitation with genetic data. PMID:35193622
An estimate of the deepest branches of the tree of life from ancient vertically evolving genes. PMID:35190025
Whole-genome analysis of SARS-CoV-2 in a 2020 infection cluster in a nursing home of Southern Italy. PMID:35189404
Combining tangential flow filtration and size fractionation of mesocosm water as a method for the investigation of waterborne coral diseases. PMID:35187265
The complete mitochondrial genome of Clepsis pallidana (Lepidoptera: Tortricidae) with phylogenetic implications. PMID:35187239
Characterization of the complete mitochondrial genome of blacktip shark Carcharhinus limbatus (Carcharhiniformes: Carcharhinidae). PMID:35187238
The complete chloroplast genome sequence of Zanthoxylum undulatifolium Hemsl. (Rutaceae). PMID:35187237
The complete mitochondrial genome of Linnemannia amoeboidea (W. Gams) Vandepol & Bonito (Mortierellales: Mortierellaceae). PMID:35187234
Chloroplast genome structure and phylogenetic position of Syringodium isoetifolium (Asch.) Dandy. PMID:35187232
Genome Sequences of Two Strains of Prototheca wickerhamii Provide Insight Into the Protothecosis Evolution. PMID:35186789
A case of Candida auris candidemia in Xiamen, China, and a comparative analysis of clinical isolates in China. PMID:35186414
The history of foot-and-mouth disease virus serotype C: the first known extinct serotype? PMID:35186323
Integrated Analysis of Transcriptome and Proteome to Reveal Pupal Color Switch in Papilio xuthus Butterflies. PMID:35186009
Comparative Analysis of the Complete Chloroplast Genomes of Nine Paphiopedilum Species. PMID:35186004
Identification, Molecular Characteristics, and Evolution of GRF Gene Family in Foxtail Millet (Setaria italica L.). PMID:35185998
Comparative Study on Physiological Responses and Gene Expression of Bud Endodormancy Release Between Two Herbaceous Peony Cultivars (Paeonia lactiflora Pall.) With Contrasting Chilling Requirements. PMID:35185946
Isolation, Characterization and Draft Genome Analysis of Bacteriophages Infecting Acidovorax citrulli. PMID:35185829
The complete chloroplast genome of Onobrychis gaubae (Fabaceae-Papilionoideae): comparative analysis with related IR-lacking clade species. PMID:35183127
Genome binning of viral entities from bulk metagenomics data. PMID:35181661
Reconstruction of Nitrogenase Predecessors Suggests Origin from Maturase-Like Proteins. PMID:35179578
HIV transmission patterns among transgender women, their cisgender male partners, and cisgender MSM in Lima, Peru: A molecular epidemiologic and phylodynamic analysis. PMID:35178526
Dispersal into the Qinghai-Tibet plateau: evidence from the genetic structure and demography of the alpine plant Triosteum pinnatifidum. PMID:35178292
Hammerhead flatworms (Platyhelminthes, Geoplanidae, Bipaliinae): mitochondrial genomes and description of two new species from France, Italy, and Mayotte. PMID:35178290
Updated HIV-1 Consensus Sequences Change but Stay Within Similar Distance From Worldwide Samples. PMID:35178042
Two entry tunnels in mouse TAAR9 suggest the possibility of multi-entry tunnels in olfactory receptors. PMID:35177711
Morpho-physiological adaptations of Leptocylindrus aporus and L. hargravesii to phosphate limitation in the northern Adriatic. PMID:35177689
Recurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots. PMID:35177601
A myxozoan genome reveals mosaic evolution in a parasitic cnidarian. PMID:35177085
Consecutive deletions in a unique Uruguayan SARS-CoV-2 lineage evidence the genetic variability potential of accessory genes. PMID:35176063
Xylaria feejeensis, SRNE2BP a Fungal Endophyte with Biocontrol Properties to Control Early Blight and Fusarium Wilt Disease in Tomato and Plant Growth Promotion Activity. PMID:35175450
The complete chloroplast genome sequence of Opuntia sulphurea (Cactaceae). PMID:35174291
The complete mitogenomes of the spinyhead blenny, Acanthemblemaria spinosa (chaenopsidae) and the lofty triplefin, Enneanectes altivelis (Tripterygiidae). PMID:35174288
Complete mitochondrial genome of the harmful algal bloom species Thalassiosira nordenskioeldii (Mediophyceae, Bacillariophyta) from the east China sea. PMID:35174284
Next-generation sequencing yields the complete chloroplast genome of Abies yuanbaoshanensis, an endangered species from South China. PMID:35174281
Promiscuity in Lichens Follows Clear Rules: Partner Switching in Cladonia Is Regulated by Climatic Factors and Soil Chemistry. PMID:35173688
Bacterial communities in carnivorous pitcher plants colonize and persist in inquiline mosquitoes. PMID:35172907
Migrators within migrators: exploring transposable element dynamics in the monarch butterfly, Danaus plexippus. PMID:35172896
Unprecedented organelle genomic variations in morning glories reveal independent evolutionary scenarios of parasitic plants and the diversification of plant mitochondrial complexes. PMID:35172831
The light chain of the L9 antibody is critical for binding circumsporozoite protein minor repeats and preventing malaria. PMID:35172158
2.4-Å structure of the double-ring Gemmatimonas phototrophica photosystem. PMID:35171663
A chromosome-scale genome and transcriptomic analysis of the endangered tropical tree Vatica mangachapoi (Dipterocarpaceae). PMID:35171284
Comparative genome analyses of five Vibrio penaeicida strains provide insights into their virulence-related factors. PMID:35171089
A Bacterial Genome and Culture Collection of Gut Microbial in Weanling Piglet. PMID:35171009
Narrow transmission bottlenecks and limited within-host viral diversity during a SARS-CoV-2 outbreak on a fishing boat. PMID:35169803
Drug repurposing for identification of potential spike inhibitors for SARS-CoV-2 using molecular docking and molecular dynamics simulations. PMID:35167916
Host Adaptation in Legionellales Is 1.9 Ga, Coincident with Eukaryogenesis. PMID:35167692
Chromosome-Level Genome Assemblies of Two Hypnales (Mosses) Reveal High Intergeneric Synteny. PMID:35166770
Evolutionary dynamics of SARS-CoV-2 circulating in Yogyakarta and Central Java, Indonesia: sequence analysis covering furin cleavage site (FCS) region of the spike protein. PMID:35165816
The United States Swine Pathogen Database: integrating veterinary diagnostic laboratory sequence data to monitor emerging pathogens of swine. PMID:35165687
Comparison of Magnoliaceae Plastomes: Adding Neotropical Magnolia to the Discussion. PMID:35161429
When Morphology and Biogeography Approximate Nuclear ITS but Conflict with Plastid Phylogeny: Phylogeography of the Lotus dorycnium Species Complex (Leguminosae). PMID:35161391
Association of Tandem Repeat Number Variabilities in Subunit S of the Type I Restriction-Modification System with Macrolide Resistance in Mycoplasma pneumoniae. PMID:35160167
Gene age shapes the transcriptional landscape of sexual morphogenesis in mushroom-forming fungi (Agaricomycetes). PMID:35156613
Epidemiological, Clinical, and Phylogenetic Characteristics of the First SARS-CoV-2 Transmission in a Nursing Home of Singapore: A Prospective Observational Investigation. PMID:35155470
The Importance of Gene Duplication and Domain Repeat Expansion for the Function and Evolution of Fertilization Proteins. PMID:35155436
Role of Fasciola hepatica Small RNAs in the Interaction With the Mammalian Host. PMID:35155272
The Complete Mitogenome of Elymus sibiricus and Insights Into Its Evolutionary Pattern Based on Simple Repeat Sequences of Seed Plant Mitogenomes. PMID:35154192
Characterization of a Novel Hot-Spring Cyanobacterium Leptodesmis sichuanensis sp. Nov. and Genomic Insights of Molecular Adaptations Into Its Habitat. PMID:35154020
Whole-genome sequencing of Kaposi sarcoma-associated herpesvirus (KSHV/HHV8) reveals evidence for two African lineages. PMID:35152042
Differential gene expression associated with a floral scent polymorphism in the evening primrose Oenothera harringtonii (Onagraceae). PMID:35151274
Chromosome-Level Genome Assembly of Anthidium xuezhongi Niu & Zhu, 2020 (Hymenoptera: Apoidea: Megachilidae: Anthidiini). PMID:35150256
Characterization and phylogenetic analysis of the complete mitochondrial genome of the pathogenic fungus Ilyonectria destructans. PMID:35149731
Comparative analysis of microbial communities from different full-scale haloalkaline biodesulfurization systems. PMID:35147744
Synthesis of Nuclear and Chloroplast Data Combined With Network Analyses Supports the Polyploid Origin of the Apple Tribe and the Hybrid Origin of the Maleae-Gillenieae Clade. PMID:35145537
Molecular assays to reliably detect and quantify predation on a forest pest in bats faeces. PMID:35145165
Overlooked and widespread pennate diatom-diazotroph symbioses in the sea. PMID:35145076
A New Gene Family Diagnostic for Intracellular Biomineralization of Amorphous Ca Carbonates by Cyanobacteria. PMID:35143662
A curated dataset of peste des petits ruminants virus sequences for molecular epidemiological analyses. PMID:35143560
Mitophylogenomics of the zoonotic fluke Echinostoma malayanum confirms it as a member of the genus Artyfechinostomum Lane, 1915 and illustrates the complexity of Echinostomatidae systematics. PMID:35142926
Complete Mitochondrial Genome Sequence of a Seabird, Wedge-Tailed Shearwater (Ardenna pacifica). PMID:35142545
The complete chloroplast genome sequence of medicinal plant Centipeda minima (Compositae). PMID:35141416
Mitochondrial genome of Dacus haikouensis Wang and Cheng 2002 using next-generation sequencing from China and its phylogenetic implication. PMID:35141408
Characterization of the complete chloroplast genome of Carya laciniosa (F.Michx.) G.Don (Juglandaceae). PMID:35141403
Characterization of the Gut Microbiome and Resistomes of Wild and Zoo-Captive Macaques. PMID:35141306
Plastome Phylogenomics of Aucuba (Garryaceae). PMID:35140747
Chromosome-Level Genome Assembly of the Rare and Endangered Tropical Plant Speranskia yunnanensis (Euphorbiaceae). PMID:35140736
Sonogenetic control of mammalian cells using exogenous Transient Receptor Potential A1 channels. PMID:35140203
Incursion of H5N8 high pathogenicity avian influenza virus (HPAIV) into gamebirds in England. PMID:35139977
Drivers of gut microbiome variation within and between groups of a wild Malagasy primate. PMID:35139921
Signatures of hybridization in Trypanosoma brucei. PMID:35139131
Sal-type ABC-F proteins: intrinsic and common mediators of pleuromutilin resistance by target protection in staphylococci. PMID:35137182
Origin of life: protoribosome forms peptide bonds and links RNA and protein dominated worlds. PMID:35137169
Exploring the Natural Origins of SARS-CoV-2 in the Light of Recombination. PMID:35137080
Morphological, cytological, and molecular evidences for natural hybridization between Roegneria stricta and Roegneria turczaninovii (Triticeae: Poaceae). PMID:35136562
Dynamics of actively dividing prokaryotes in the western Mediterranean Sea. PMID:35136122
A transcriptomic reevaluation of the accessory olfactory organ in Bichir (Polypterus senegalus). PMID:35135614
The effects of phylogeny, habitat and host characteristics on the thermal sensitivity of helminth development. PMID:35135354
A diversification relay race from Caribbean-Mesoamerica to the Andes: historical biogeography of Xylophanes hawkmoths. PMID:35135350
Analysis of SARS-CoV-2 synonymous codon usage evolution throughout the COVID-19 pandemic. PMID:35134624
Evolution of Gene Expression across Species and Specialized Zooids in Siphonophora. PMID:35134205
Spatiotemporal Analyses of 2 Co-Circulating SARS-CoV-2 Variants, New York State, USA. PMID:35133957
Patterns of Volatility Across the Spike Protein Accurately Predict the Emergence of Mutations within SARS-CoV-2 Lineages. PMID:35132415
A peptide toxin in ant venom mimics vertebrate EGF-like hormones to cause long-lasting hypersensitivity in mammals. PMID:35131940
Re-evaluating the case for poecilogony in the gastropod Planaxis sulcatus (Cerithioidea, Planaxidae). PMID:35130841
Multiplexed CRISPR-based microfluidic platform for clinical testing of respiratory viruses and identification of SARS-CoV-2 variants. PMID:35130561
The complete mitochondrial genome of Matsumuramata muiri (Hemiptera: Delphacidae). PMID:35128056
Plastid genome data provide new insights into the phylogeny and evolution of the genus Epimedium. PMID:35127172
Protective effects of different Bacteroides vulgatus strains against lipopolysaccharide-induced acute intestinal injury, and their underlying functional genes. PMID:35127162
Prey life-history influences the evolution of egg mass and indirectly reproductive investment in a group of free-living insect predators. PMID:35127006
Chromosome-Scale Genome of Masked Palm Civet (Paguma larvata) Shows Genomic Signatures of Its Biological Characteristics and Evolution. PMID:35126472
Phylogenetic Analysis of the SQUAMOSA Promoter-Binding Protein-Like Genes in Four Ipomoea Species and Expression Profiling of the IbSPLs During Storage Root Development in Sweet Potato (Ipomoea batatas). PMID:35126426
Clinical and genomic data of sars-cov-2 detected in maternal-fetal interface during the first wave of infection in brazil. PMID:35123044
Detection and diversity of the mannosylerythritol lipid (MEL) gene cluster and lipase A and B genes of Moesziomyces antarcticus isolated from terrestrial sites chronically contaminated with crude oil in Trinidad. PMID:35120442
The first complete plastome of Mimusops coriacea (A. DC.) Miq. (Sapotaceae). PMID:35098966
Convergent molecular evolution of phosphoenolpyruvate carboxylase gene family in C4 and crassulacean acid metabolism plants. PMID:35116203
Pulvinatusia (Brassicaceae), a new cushion genus from China and its systematic position. PMID:35115879
Battle of the bands: systematics and phylogeny of the white Goniobranchus nudibranchs with marginal bands (Nudibranchia, Chromodorididae). PMID:35115877
Comparative analysis of the mitogenomes of two Corydoras (Siluriformes, Loricarioidei) with nine known Corydoras, and a phylogenetic analysis of Loricarioidei. PMID:35115873
Multiple expansions of globally uncommon SARS-CoV-2 lineages in Nigeria. PMID:35115515
Genomic insights into the evolution of Echinochloa species as weed and orphan crop. PMID:35115514
A case of avian influenza A(H5N1) in England, January 2022. PMID:35115075
ACE2 binding is an ancestral and evolvable trait of sarbecoviruses. PMID:35114688
From musk to body odor: Decoding olfaction through genetic variation. PMID:35113854
Identification of the First SARS-CoV-2 Lineage B.1.1.529 Virus Detected in Europe. PMID:35112910
The complete chloroplast genome of Nymphaea thermarum (Nymphaeaceae) from Rwanda, Africa. PMID:35111940
The complete chloroplast genome of the threatened Napa False Indigo Amorpha californica var. napensis Jeps. 1925 (Fabaceae) from Northern California, USA. PMID:35111938
Genome-Wide Diversity of MADS-Box Genes in Bread Wheat is Associated with its Rapid Global Adaptability. PMID:35111207
Buxus and Tetracentron genomes help resolve eudicot genome history. PMID:35110570
Gut microbiome of the largest living rodent harbors unprecedented enzymatic systems to degrade plant polysaccharides. PMID:35110564
The complete chloroplast genome sequencing analysis revealed an unusual IRs reduction in three species of subfamily Zygophylloideae. PMID:35108324
The "Other" Rickettsiales: an Overview of the Family "Candidatus Midichloriaceae". PMID:35108076
Genomic and Functional Dissections of Dickeya zeae Shed Light on the Role of Type III Secretion System and Cell Wall-Degrading Enzymes to Host Range and Virulence. PMID:35107329
Evolution of Transient Receptor Potential (TRP) Ion Channels in Antarctic Fishes (Cryonotothenioidea) and Identification of Putative Thermosensors. PMID:35106545
Molecular and morphological evidence for a new species of Pogostemon (Lamiaceae) from Hainan Island, China. PMID:35106056
Amphioxus muscle transcriptomes reveal vertebrate-like myoblast fusion genes and a highly conserved role of insulin signalling in the metabolism of muscle. PMID:35105312
Altered TMPRSS2 usage by SARS-CoV-2 Omicron impacts infectivity and fusogenicity. PMID:35104837
A Chromosome-Level Genome Assembly of the Parasitic Wasp Chelonus formosanus Sonan 1932 (Hymenoptera: Braconidae). PMID:35104339
Apicomplexans in small mammals from Chile, with the first report of the Babesia microti group in South American rodents. PMID:35102466
How microbiomes can help inform conservation: landscape characterisation of gut microbiota helps shed light on additional population structure in a specialist folivore. PMID:35101152
Environmental identification of arbuscular mycorrhizal fungi using the LSU rDNA gene region: an expanded database and improved pipeline. PMID:35099622
Molecular Evolution across Mouse Spermatogenesis. PMID:35099536
Complete mitochondrial genome of Limnophyes minimus (Diptera: Chironomidae). PMID:35097216
The complete chloroplast genome sequence of Spiraea japonica var. acuminata Franch. (Rosaceae). PMID:35097214
The complete chloroplast genome of Pseudosasa usawae (Poaceae: Bambusoideae: Arundinarieae) in Taiwan. PMID:35097213
The complete chloroplast genome sequence of chaya (Cnidoscolus aconitifolius) and phylogenetic analysis. PMID:35097211
The complete chloroplast genome sequence and phylogenetic analysis of Nanhaia speciosa (Fabaceae). PMID:35097210
The complete mitochondrial genome of Pheropsophus occipitalis MacLeay, 1825 (Coleoptera: Carabidae). PMID:35097209
The complete chloroplast genome of Tugarinovia mongolica Iljin (Asteraceae) from China. PMID:35097208
Molecular Mechanism of SARS-CoVs Orf6 Targeting the Rae1-Nup98 Complex to Compete With mRNA Nuclear Export. PMID:35096974
Genome-Wide Identification of JRL Genes in Moso Bamboo and Their Expression Profiles in Response to Multiple Hormones and Abiotic Stresses. PMID:35095981
The Role of Heterotrimeric G-Protein Beta Subunits During Nodulation in Medicago truncatula Gaertn and Pisum sativum L. PMID:35095980
Kinase Function of Brassinosteroid Receptor Specified by Two Allosterically Regulated Subdomains. PMID:35095975
Redelimitation of Heteroradulum (Auriculariales, Basidiomycota) with H.australiense sp. nov. PMID:35095306
Three new species of Iodosphaeria (Xylariomycetidae): I.chiayiensis, I.jinghongensis and I.thailandica. PMID:35095303
Nicotianarupicola sp. nov. and Nicotianaknightiana (sect.Paniculatae, Solanaceae), a new endemic and a new record for the flora of Chile. PMID:35095294
Molecular phylogeny and taxonomy of the Hydrangeaserrata complex (Hydrangeaceae) in western Japan, including a new subspecies of H.acuminata from Yakushima. PMID:35095292
A chromosome-level genome assembly of an alpine plant Crucihimalaya lasiocarpa provides insights into high-altitude adaptation. PMID:35094078
Mutations that adapt SARS-CoV-2 to mink or ferret do not increase fitness in the human airway. PMID:35093235
Novel papillomavirus in a mallard duck with mesenchymal chondroid dermal tumors. PMID:35090373
Arthrobacter wenxiniae sp. nov., a novel plant growth-promoting rhizobacteria species harbouring a carotenoids biosynthetic gene cluster. PMID:35088183
Characterization of the complete plastome of Spiraea trilobata (Rosaceae), a perennial shrub. PMID:35087944
The first complete chloroplast genome of Tetradium daniellii (Benn.) T. G. Hartley. PMID:35087943
The complete chloroplast genome of two related fig species Ficus squamosa and Ficus heterostyla. PMID:35087939
Complete chloroplast genome of Geum aleppicum (Rosaceae). PMID:35087938
The complete chloroplast genome of Rubus setchuenensis, an edible and medicinal dual-purpose wild plant. PMID:35087936
The complete chloroplast genome of Prunus tangutica (Batal.) Korsh. PMID:35087935
Characterization of the complete chloroplast genome of Jatropha curcas var. nigroviensrugosus. PMID:35087934
GAL08, an Uncultivated Group of Acidobacteria, Is a Dominant Bacterial Clade in a Neutral Hot Spring. PMID:35087491
Amino Acid Specificity of Ancestral Aminoacyl-tRNA Synthetase Prior to the Last Universal Common Ancestor Commonote commonote. PMID:35084522
Identification of SARS-CoV-2 Variants and Their Clinical Significance in Hefei, China. PMID:35083244
Chloroplast Genome Evolution in Four Montane Zingiberaceae Taxa in China. PMID:35082807
Plastome phylogenomics of Allaeanthus, Broussonetia and Malaisia (Dorstenieae, Moraceae) and the origin of B. × kazinoki. PMID:35080694
Novel gene rearrangement in the mitochondrial genome of Anastatus fulloi (Hymenoptera Chalcidoidea) and phylogenetic implications for Chalcidoidea. PMID:35079090
Characterization of the chloroplast genome of Lonicera ruprechtiana Regel and comparison with other selected species of Caprifoliaceae. PMID:35077482
Prunus necrotic ringspot virus in Turkey: an immigrant population. PMID:35076793
Recent molecular evolution of hepatitis B virus genotype F in Latin America. PMID:35076792
A simple guide to de novo transcriptome assembly and annotation. PMID:35076693
Evolution of host-microbe cell adherence by receptor domain shuffling. PMID:35076392
SARS-CoV-2 Omicron spike mediated immune escape and tropism shift. PMID:35075452
Evaluation of potential miRNA sponge effects of SARS genomes in human. PMID:35075440
A spatiotemporal atlas of the lepidopteran pest Helicoverpa armigera midgut provides insights into nutrient processing and pH regulation. PMID:35073840
Evolutionary Dynamics of Host Organs for Microbial Symbiosis in Tortoise Leaf Beetles (Coleoptera: Chrysomelidae: Cassidinae). PMID:35073753
Disruption of Active Trans-Sialidase Genes Impairs Egress from Mammalian Host Cells and Generates Highly Attenuated Trypanosoma cruzi Parasites. PMID:35073735
First report of the complete mitogenome of Tanypus punctipennis Meigen, 1818 (Diptera, Chironomidae) from Hebei Province, China. PMID:35071760
Complete chloroplast genome of Baccaurea ramiflora and its phylogenetic analysis. PMID:35071756
The complete chloroplast genome of a medical herb, Rheum lhasaense (Polygonaceae), from Qinghai-Tibet Plateau in China. PMID:35071755
The complete plastid genome of Cheniella didyma (H.Y.Chen) R.Clark & Mackinder (Leguminosae). PMID:35071754
Isolation and Identification of a Rare Spike Gene Double-Deletion SARS-CoV-2 Variant From the Patient With High Cycle Threshold Value. PMID:35071285
B. infantis EVC001 Is Well-Tolerated and Improves Human Milk Oligosaccharide Utilization in Preterm Infants in the Neonatal Intensive Care Unit. PMID:35071138
Mahonia vs. Berberis Unloaded: Generic Delimitation and Infrafamilial Classification of Berberidaceae Based on Plastid Phylogenomics. PMID:35069611
Two new species of Phallus (Phallaceae) with a white indusium from China. PMID:35068983
A new subspecies of Stellariaalsine (Caryophyllaceae) from Yakushima, Japan. PMID:35068974
Morphological and molecular characterisation of the Popijač's Yellow Sally, Isoperlapopijaci sp. nov., a new stenoendemic stonefly species from Croatia (Plecoptera, Perlodidae). PMID:35068954
The PIWI/piRNA response is relaxed in a rodent that lacks mobilizing transposable elements. PMID:35064043
Compositional analysis of the tonsil microbiota in relationship to Streptococcus suis disease in nursery pigs in Ontario. PMID:35063043
Negeviruses isolated from mosquitoes in the Brazilian Amazon. PMID:35062977
Vaccine Breakthrough Infections by SARS-CoV-2 Variants after ChAdOx1 nCoV-19 Vaccination in Healthcare Workers. PMID:35062715
Isolation and Characterization of the First Temperate Virus Infecting Psychrobacillus from Marine Sediments. PMID:35062312
A Pre-Vaccination Baseline of SARS-CoV-2 Genetic Surveillance and Diversity in the United States. PMID:35062308
Co-Circulation of Chikungunya and Multiple DENV Serotypes and Genotypes, Western Indonesia 2015-2016. PMID:35062303
The Bacteriophage Pf-10-A Component of the Biopesticide "Multiphage" Used to Control Agricultural Crop Diseases Caused by Pseudomonas syringae. PMID:35062246
Genome Analysis of an Alphabaculovirus Isolated from the Larch Looper, Erannis ankeraria. PMID:35062240
Ingestion of miso regulates immunological robustness in mice. PMID:35061718
Higher-level phylogeny of Chrysomelidae based on expanded sampling of mitogenomes. PMID:35061698
Latilactobacillus fragifolii sp. nov., isolated from leaves of a strawberry plant (Fragaria x ananassa). PMID:35060849
The complete chloroplast genome sequence of Clerodendranthus spicatus, a medicinal plant for preventing and treating kidney diseases from Lamiaceae family. PMID:35059973
Biome-specific distribution of Ni-containing carbon monoxide dehydrogenases. PMID:35059858
Elevated mutation rates underlie the evolution of the aquatic plant family Podostemaceae. PMID:35058542
Nosocomial transmission clusters and lineage diversity characterized by SARS-CoV-2 genomes from two large hospitals in Paris, France, in 2020. PMID:35058525
Cases of Acute Flaccid Paralysis Associated with Coxsackievirus A2: Findings of a 20-Year Surveillance in the Russian Federation. PMID:35056561
Bacterial Complexity of Traditional Mountain Butter Is Affected by the Malga-Farm of Production. PMID:35056468
The Azurin Coding Gene: Origin and Phylogenetic Distribution. PMID:35056457
Capture and Ex-Situ Analysis of Environmental Biofilms in Livestock Buildings. PMID:35056451
Molecular Detection of Tick-Borne Agents in Cats from Southeastern and Northern Brazil. PMID:35056054
The Importance of Glycerophospholipid Production to the Mutualist Symbiosis of Trypanosomatids. PMID:35055989
First Detection of NADC34-like PRRSV as a Main Epidemic Strain on a Large Farm in China. PMID:35055980
Dominance of Fructose-Associated Fructobacillus in the Gut Microbiome of Bumblebees (Bombus terrestris) Inhabiting Natural Forest Meadows. PMID:35055941
Mitogenomes of Nine Asian Skipper Genera and Their Phylogenetic Position (Lepidoptera: Hesperiidae: Pyrginae). PMID:35055910
The Complete Mitochondrial Genomes of Four Species in the Subfamily Limenitidinae (Lepidoptera, Nymphalidae) and a Phylogenetic Analysis. PMID:35055858
Microbiome Changes in Humans with Parkinson's Disease after Photobiomodulation Therapy: A Retrospective Study. PMID:35055364
Complete Chloroplast Genome Sequence of Fagus longipetiolata Seemen (Fagaceae): Genome Structure, Adaptive Evolution, and Phylogenetic Relationships. PMID:35054485
Characterization, Comparison of Four New Mitogenomes of Centrotinae (Hemiptera: Membracidae) and Phylogenetic Implications Supports New Synonymy. PMID:35054454
An Interplay between Viruses and Bacteria Associated with the White Sea Sponges Revealed by Metagenomics. PMID:35054418
Comparative Analysis of the Complete Mitochondrial Genomes of Five Species of Ricaniidae (Hemiptera: Fulgoromorpha) and Phylogenetic Implications. PMID:35053090
Quantitative Insights into the Contribution of Nematocysts to the Adaptive Success of Cnidarians Based on Proteomic Analysis. PMID:35053089
Comparative and Phylogenetic Analysis of Complete Plastomes among Aristidoideae Species (Poaceae). PMID:35053061
A Large-Scale Multiple Genome Comparison of Acidophilic Archaea (pH ≤ 5.0) Extends Our Understanding of Oxidative Stress Responses in Polyextreme Environments. PMID:35052563
Comparative Analysis of Three Trypanosomatid Catalases of Different Origin. PMID:35052550
Unlocking the Complete Chloroplast Genome of a Native Tree Species from the Amazon Basin, Capirona (Calycophyllum Spruceanum, Rubiaceae), and Its Comparative Analysis with Other Ixoroideae Species. PMID:35052453
HIV Protease and Integrase Empirical Substitution Models of Evolution: Protein-Specific Models Outperform Generalist Models. PMID:35052404
Impact of Harvest on Switchgrass Leaf Microbial Communities. PMID:35052362
Actinoporin-like Proteins Are Widely Distributed in the Phylum Porifera. PMID:35049929
Phylotranscriptomics Reveals Discordance in the Phylogeny of Hawaiian Drosophila and Scaptomyza (Diptera: Drosophilidae). PMID:35048974
Single-cell Microbiomics Unveils Distribution and Patterns of Microbial Symbioses in the Natural Environment. PMID:35048168
Integrative analysis of the shikonin metabolic network identifies new gene connections and reveals evolutionary insight into shikonin biosynthesis. PMID:35048120
Evolutionary alterations in gene expression and enzymatic activities of gibberellin 3-oxidase 1 in Oryza. PMID:35046494
Template switching in DNA replication can create and maintain RNA hairpins. PMID:35046021
Antennal transcriptome analysis of chemosensory genes in the cowpea beetle, Callosobruchus maculatus (F.). PMID:35045135
Novel insights into Pinus species plastids genome through phylogenetic relationships and repeat sequence analysis. PMID:35045089
Molecular phylogeny of Asian Ardisia (Myrsinoideae, Primulaceae) and their leaf-nodulated endosymbionts, Burkholderia s.l. (Burkholderiaceae). PMID:35045070
Bacterial Biofilm Thickness and Fungal Inhibitory Bacterial Richness Both Prevent Establishment of the Amphibian Fungal Pathogen Batrachochytrium dendrobatidis. PMID:35044804
Diversity and Distribution of Microbial Communities Associated with Reef Corals of the Malay Peninsula. PMID:35043221
Chromosome restructuring and number change during the evolution of Morus notabilis and Morus alba. PMID:35043186
Rapid radiation in a highly diverse marine environment. PMID:35042790
Regulation of gliotoxin biosynthesis and protection in Aspergillus species. PMID:35041649
The chrysanthemum lavandulifolium genome and the molecular mechanism underlying diverse capitulum types. PMID:35039834
Identification of a novel SARS-CoV-2 P.1 sub-lineage in Brazil provides new insights about the mechanisms of emergence of variants of concern. PMID:35039782
Mitonuclear incompatibility as a hidden driver behind the genome ancestry of African admixed cattle. PMID:35039029
The Emergence of SARS-CoV-2 Variants of Concern Is Driven by Acceleration of the Substitution Rate. PMID:35038741
Finding and Characterizing Repeats in Plant Genomes. PMID:35037215
Phylotranscriptomics of Theaceae: generic-level relationships, reticulation and whole-genome duplication. PMID:35037017
First record of the complete mitochondrial genome and phylogenetic analysis of Limnodrilus hoffmeisteri Claparède, 1862 (Annelida; Clitellata; Oligochaeta). PMID:35036560
Reinvestigating the phylogeny of Myriapoda with more extensive taxon sampling and novel genetic perspective. PMID:35036164
Horizontal transfer and evolution of wall teichoic acid gene cassettes in Bacillus subtilis. PMID:35035886
Top-Down Enrichment Strategy to Co-cultivate Lactic Acid and Lignocellulolytic Bacteria From the Megathyrsus maximus Phyllosphere. PMID:35035382
Investigation of the Fungal Diversity of the Federated States of Micronesia and the Construction of an Updated Fungal Inventory. PMID:35035247
Metabarcoding reveals low prevalence of microsporidian infections in castor bean tick (Ixodes ricinus). PMID:35033159
A robust, cost-effective and widely applicable whole-genome sequencing protocol for capripoxviruses. PMID:35032481
Complex and reticulate origin of edible roses (Rosa, Rosaceae) in China. PMID:35031798
Chloroplast phylogenomics in Camelina (Brassicaceae) reveals multiple origins of polyploid species and the maternal lineage of C. sativa. PMID:35031794
New data on Henneguya postexilis Minchew, 1977, a parasite of channel catfish Ictalurus punctatus, with notes on resolution of molecular markers for myxozoan phylogeny. PMID:35028798
Fungal glycoside hydrolase family 44 xyloglucanases are restricted to the phylum Basidiomycota and show a distinct xyloglucan cleavage pattern. PMID:35028537
The complete chloroplast genome and phylogenetic analysis of Manglietia ventii (Magnoliaceae). PMID:35028416
The complete chloroplast genome of a Chinese endemic poorly known species Campylotropis grandifolia (Fabaceae). PMID:35028415
The complete chloroplast genome of Phyllostachys edulis f. tubiformis (Bambusoideae): a highly appreciated type of ornamental bamboo in China. PMID:35028414
Population genomics reveals historical and ongoing recombination in the Fusarium oxysporum species complex. PMID:35027981
Morphological investigation of genital organs and first insights into the phylogeny of the genus Siciliaria Vest, 1867 as a basis for a taxonomic revision (Mollusca, Gastropoda, Clausiliidae). PMID:35027858
An intronic transposon insertion associates with a trans-species color polymorphism in Midas cichlid fishes. PMID:35027541
Proteome evaluation of homolog abundance patterns in Arachis hypogaea cv. Tifrunner. PMID:35027052
Plastid phylogenomics of tribe Perseeae (Lauraceae) yields insights into the evolution of East Asian subtropical evergreen broad-leaved forests. PMID:35027008
COVID-19 Cluster Linked to Aerosol Transmission of SARS-CoV-2 via Floor Drains. PMID:35023551
Balamuthia spinosa n. sp. (Amoebozoa, Discosea) from the brackish-water sediments of Nivå Bay (Baltic Sea, The Sound) - a novel potential vector of Legionella pneumophila in the environment. PMID:35022888
The rise of grasslands is linked to atmospheric CO2 decline in the late Palaeogene. PMID:35022396
Evolution of Brain-Expressed Biogenic Amine Receptors into Olfactory Trace Amine-Associated Receptors. PMID:35021231
A Collaborative Classroom Investigation of the Evolution of SABATH Methyltransferase Substrate Preference Shifts over 120 My of Flowering Plant History. PMID:35021222
SpeciesRax: A Tool for Maximum Likelihood Species Tree Inference from Gene Family Trees under Duplication, Transfer, and Loss. PMID:35021210
Distribution and Evolutionary History of Sialic Acid Catabolism in the Phylum Actinobacteria. PMID:35019771
Comparative Study of Ten Thogotovirus Isolates and Their Distinct In Vivo Characteristics. PMID:35019718
Characterization of a 2016-2017 Human Seasonal H3 Influenza A Virus Spillover Now Endemic to U.S. Swine. PMID:35019669
Identification and characterisation of SARS-CoV-2 and Human alphaherpesvirus 1 from a productive coinfection in a fatal COVID-19 case. PMID:35019069
Broadly neutralizing antibodies overcome SARS-CoV-2 Omicron antigenic shift. PMID:35016195
COVID-19 Outcomes and Genomic Characterization of SARS-CoV-2 Isolated From Veterans in New England States: Retrospective Analysis. PMID:35014989
Phylogenetic estimates of SARS-CoV-2 introductions into Washington State. PMID:35013735
Phylogenetically and functionally diverse microorganisms reside under the Ross Ice Shelf. PMID:35013291
Structural assessment of HLA-A2-restricted SARS-CoV-2 spike epitopes recognized by public and private T-cell receptors. PMID:35013235
Genome-wide analysis of metallothionein gene family in maize to reveal its role in development and stress resistance to heavy metal. PMID:35012672
A scaffold-level genome assembly of a minute pirate bug, Orius laevigatus (Hemiptera: Anthocoridae), and a comparative analysis of insecticide resistance-related gene families with hemipteran crop pests. PMID:35012450
Biosynthesis of Silver Chloride Nanoparticles by Rhizospheric Bacteria and Their Antibacterial Activity against Phytopathogenic Bacterium Ralstonia solanacearum. PMID:35011455
Impact of Dietary Sodium Butyrate and Salinomycin on Performance and Intestinal Microbiota in a Broiler Gut Leakage Model. PMID:35011218
Pseudocochlodinium profundisulcus Resting Cysts Detected in the Ballast Tank Sediment of Ships Arriving in the Ports of China and North America and the Implications in the Species' Geographic Distribution and Possible Invasion. PMID:35010560
A VIN3-like Protein OsVIL1 Is Involved in Grain Yield and Biomass in Rice. PMID:35009085
Reassessment of Annamocarya sinesis (Carya sinensis) Taxonomy through Concatenation and Coalescence Phylogenetic Analysis. PMID:35009055
Synthesis of Dolichols in Candida albicans Is Co-Regulated with Elongation of Fatty Acids. PMID:35008833
An Efficient Protein Evolution Workflow for the Improvement of Bacterial PET Hydrolyzing Enzymes. PMID:35008691
Ophiostomatoid fungi including a new species associated with Asian larch bark beetle Ips subelongatus, in Heilongjiang (Northeast China). PMID:35005579
Polyozellus vs. Pseudotomentella: generic delimitation with a multi-gene dataset. PMID:35005578
Asperosporus subterraneus, a new genus and species of sequestrate Agaricaceae found in Florida nursery production. PMID:35005575
Aspergillus diversity from the Gcwihaba Cave in Botswana and description of one new species. PMID:35005574
Origin and evolutionary analysis of the SARS-CoV-2 Omicron variant. PMID:35005525
The complete chloroplast genome sequence of Clivia robusta. PMID:35005238
Characterization of the complete chloroplast genome of a Peruvian landrace of Capsicum chinense Jacq. (Solanaceae), arnaucho chili pepper. PMID:35005231
Molecular Identification of Sarcocystis sp. (Apicomplexa, Sarcocystidae) in Offspring of Tengmalm's Owls, Aegolius funereus (Aves, Strigidae). PMID:35004932
Identification of evolutionary relationships and DNA markers in the medicinally important genus Fritillaria based on chloroplast genomics. PMID:35003925
Edaphic heterogeneity and the evolutionary trajectory of Amazonian plant communities. PMID:35003631
Re-examination of species limits in Aspergillus section Flavipedes using advanced species delimitation methods and description of four new species. PMID:35003383
Chloroplast Ribosomes Interact With the Insertase Alb3 in the Thylakoid Membrane. PMID:35003166
SARS-CoV-2-Encoded MiRNAs Inhibit Host Type I Interferon Pathway and Mediate Allelic Differential Expression of Susceptible Gene. PMID:35003084
Characterization of the complete chloroplast genome of Zephyranthes phycelloides (Amaryllidaceae, tribe Hippeastreae) from Atacama region of Chile. PMID:35002462
New species and records of Chapsa (Graphidaceae) in China. PMID:35002371
Gems of the southern Japanese seas - four new species of Edwardsianthus (Anthozoa, Actiniaria, Edwardsiidae) with redescriptions of two species. PMID:35002358
Placental Mammals Acquired Functional Sequences in NRK for Regulating the CK2-PTEN-AKT Pathway and Placental Cell Proliferation. PMID:34999820
Comparative Population Genomics of Cryptic Speciation and Adaptive Divergence in Bicknell's and Gray-Cheeked Thrushes (Aves: Catharus bicknelli and Catharus minimus). PMID:34999784
Rel/NF-κB Transcription Factors Emerged at the Onset of Opisthokonts. PMID:34999783
Regulation of Src tumor activity by its N-terminal intrinsically disordered region. PMID:34999732
Identification of missed viruses by metagenomic sequencing of clinical respiratory samples from Kenya. PMID:34997042
Comparative genome analysis of plant ascomycete fungal pathogens with different lifestyles reveals distinctive virulence strategies. PMID:34996360
Complete mitochondrial genome of the Korean endemic springtail Homidia koreana Lee & Lee, 1981 (Collembola: Entomobryidae). PMID:34993338
Characterization of the complete mitochondrial genome of Cercospora nicotianae (Ellis & Everh, 1893) (Dothideomycetes: Capnodiales). PMID:34993336
The complete chloroplast genome of Vandenboschia striata, a common and widespread filmy fern (Hymenophyllaceae). PMID:34993335
The complete chloroplast and mitochondrial genomes of Scopelophila cataractae (Mitt.) Broth. (Pottiaceae, Bryophyta). PMID:34993334
The complete chloroplast genome of Scoparia dulcis (Plantaginaceae). PMID:34993332
The complete chloroplast genome of Aconitum piepunense (Ranunculaceae) and its phylogenetic analysis. PMID:34993331
The complete mitochondrial genome of a polyphagous insect: Colasposoma dauricum (Coleoptera: Chrysomelidae: Eumolpinae). PMID:34993328
The complete chloroplast genome sequence of Libanotis buchtormensis (Apiaceae). PMID:34993325
The complete chloroplast genome sequence of Gynura cusimbua (D. Don) S. Moore. PMID:34993324
The complete plastid genome of Kelloggia chinensis Franch. (Rubiaceae), an endemic species from East Asia. PMID:34993322
Characterization and analysis of complete chloroplast genome of Clausena anisum-olens (Blanco) Merrill. PMID:34993321
The complete mitochondrial genome of Uroleucon erigeronense (Thomas, 1878) (Hemiptera: Aphididae). PMID:34993319
Characterization of the complete chloroplast genome of Leucomeris decora Kurz (Asteraceae). PMID:34993315
Characterization of the chloroplast genome of Meterostachys sikokianus (Makino) Nakai (Crassulaceae) and its phylogenetic analysis. PMID:34993311
The complete chloroplast genome sequence of Michelia amoena Q.F.Zheng et M.M.Lin. PMID:34993310
Transcriptome analysis identifies candidate genes in the biosynthetic pathway of sex pheromones from a zygaenid moth, Achelura yunnanensis (Lepidoptera: Zygaenidae). PMID:34993022
The Impact of Pipe Material on the Diversity of Microbial Communities in Drinking Water Distribution Systems. PMID:34992587
Comparative genomics and phylogenetic relationships of two endemic and endangered species (Handeliodendron bodinieri and Eurycorymbus cavaleriei) of two monotypic genera within Sapindales. PMID:34991482
Complete chloroplast genomes of Rubus species (Rosaceae) and comparative analysis within the genus. PMID:34991463
LaRA 2: parallel and vectorized program for sequence-structure alignment of RNA sequences. PMID:34991448
Phylogenomic analysis of the Erwiniaceae supports reclassification of Kalamiella piersonii to Pantoea piersonii comb. nov. and Erwinia gerundensis to the new genus Duffyella gen. nov. as Duffyella gerundensis comb. nov. PMID:34988605
Revisiting proboscidean phylogeny and evolution through total evidence and palaeogenetic analyses including Notiomastodon ancient DNA. PMID:34988402
Statewide Longitudinal Trends in Transmitted HIV-1 Drug Resistance in Rhode Island, USA. PMID:34988256
Trends and Intensity of Rhinovirus Invasions in Kilifi, Coastal Kenya, Over a 12-Year Period, 2007-2018. PMID:34988244
In vitro Modeling of Chicken Cecal Microbiota Ecology and Metabolism Using the PolyFermS Platform. PMID:34987487
Avian haemosporidian parasites of accipitriform raptors. PMID:34986864
A divide-and-conquer phylogenomic approach based on character supermatrices resolves early steps in the evolution of the Archaea. PMID:34986784
Two new species of Cladosporium from leaf spots of Parispolyphylla in north-western Yunnan Province, China. PMID:34984042
Comparative pangenomics: analysis of 12 microbial pathogen pangenomes reveals conserved global structures of genetic and functional diversity. PMID:34983386
Microbiome composition indicate dysbiosis and lower richness in tumor breast tissues compared to healthy adjacent paired tissue, within the same women. PMID:34980006
Horizontally Acquired Cellulases Assist the Expansion of Dietary Range in Pristionchus Nematodes. PMID:34978575
Identification and Functional Characterization of Divergent 3'-Phosphate tRNA Ligase From Entamoeba histolytica. PMID:34976851
Paraharmotrema karinganiense n. gen., n. sp. (Digenea: Liolopidae) infecting the intestine of serrated hinged terrapin (Pelusios sinuatus), east African black mud turtle (Pelusios subniger), and South African helmeted turtle (Pelomedusa galeata) and a phylogenetic hypothesis for liolopid genera. PMID:34976724
Chloroplast Phylogenomic Analyses Reveal a Maternal Hybridization Event Leading to the Formation of Cultivated Peanuts. PMID:34975994
The Complete Chloroplast Genome Sequences of Eight Fagopyrum Species: Insights Into Genome Evolution and Phylogenetic Relationships. PMID:34975990
Comparative Chloroplast Genomics of Sophora Species: Evolution and Phylogenetic Relationships in the Early-Diverging Legume Subfamily Papilionoideae (Fabaceae). PMID:34975964
Reassortment Network of Influenza A Virus. PMID:34975817
Characterizing the Core Internal Gene Pool of H9N2 Responsible for Continuous Reassortment With Other Influenza A Viruses. PMID:34975784
Characterization of a Novel Chromosome-Encoded AmpC β-Lactamase Gene, bla PRC-1, in an Isolate of a Newly Classified Pseudomonas Species, Pseudomonas wenzhouensis A20, From Animal Farm Sewage. PMID:34975778
Tylocinum is no longer monotypic: Tylocinumbrevisporum sp. nov. (Boletales, Boletaceae) from northern Thailand. PMID:34975279
Ophiocordycepsaphrophoridarum sp. nov., a new entomopathogenic species from Guizhou, China. PMID:34975278
Discovery of ultrapotent broadly neutralizing antibodies from SARS-CoV-2 elite neutralizers. PMID:34973165
Systematic evaluation of horizontal gene transfer between eukaryotes and viruses. PMID:34972821
Positive Selection and Enhancer Evolution Shaped Lifespan and Body Mass in Great Apes. PMID:34971383
Screening and Identification of Trichoderma Strains isolated from Natural Habitats in China with Potential Agricultural Applications. PMID:34970627
RIGI, TLR7, and TLR3 Genes Were Predicted to Have Immune Response Against Avian Influenza in Indigenous Ducks. PMID:34970593
CalmBelt: Rapid SARS-CoV-2 Genome Characterization for Outbreak Tracking. PMID:34970567
Using Genomics to Shape the Definition of the Agglutinin-Like Sequence (ALS) Family in the Saccharomycetales. PMID:34970511
Comparative Genomic Analysis of Labrenzia aggregata (Alphaproteobacteria) Strains Isolated From the Mariana Trench: Insights Into the Metabolic Potentials and Biogeochemical Functions. PMID:34970235
Choosing the Right Life Partner: Ecological Drivers of Lichen Symbiosis. PMID:34970234
The Zip4 protein directly couples meiotic crossover formation to synaptonemal complex assembly. PMID:34969823
The SARS-CoV-2 Lambda variant exhibits enhanced infectivity and immune resistance. PMID:34968415
Embeddings from protein language models predict conservation and variant effects. PMID:34967936
VasH Contributes to Virulence of Aeromonas hydrophila and Is Necessary to the T6SS-mediated Bactericidal Effect. PMID:34966816
Taxonomic evaluation of Xylodon (Hymenochaetales, Basidiomycota) in Korea and sequence verification of the corresponding species in GenBank. PMID:34966599
Leaf spot of Hosta ventricosa caused by Fusarium oxysporum in China. PMID:34966590
A new and very spiny lizard (Gymnophthalmidae: Echinosaura) from the Andes in northwestern Ecuador. PMID:34966579
Comparative and phylogenomic analyses of mitochondrial genomes in Coccinellidae (Coleoptera: Coccinelloidea). PMID:34966567
Chloroplast Genomes for Five Skeletonema Species: Comparative and Phylogenetic Analysis. PMID:34966403
Littoral Water in Hong Kong as a Potential Transient Habitat for Juveniles of a Temperate Deepwater Gnomefish, Scombrops boops (Acropomatiformes: Scombropidae). PMID:34963786
Plastome Diversity and Phylogenomic Relationships in Asteraceae. PMID:34961169
Comparative Genomics, Evolution, and Drought-Induced Expression of Dehydrin Genes in Model Brachypodium Grasses. PMID:34961135
Genomic Epidemiology of Salmonid Alphavirus in Norwegian Aquaculture Reveals Recent Subtype-2 Transmission Dynamics and Novel Subtype-3 Lineages. PMID:34960818
Spatiotemporal Associations and Molecular Evolution of Highly Pathogenic Avian Influenza A H7N9 Virus in China from 2017 to 2021. PMID:34960793
Porcine Reproductive and Respiratory Syndrome (PRRS) Epidemiology in an Integrated Pig Company of Northern Italy: A Multilevel Threat Requiring Multilevel Interventions. PMID:34960778
Molecular Epidemiology of Rabies in Wild Canidae in Tunisia. PMID:34960742
Metatranscriptomic Sequencing Suggests the Presence of Novel RNA Viruses in Rice Transmitted by Brown Planthopper. PMID:34960733
INMI1 Zika Virus NS4B Antagonizes the Interferon Signaling by Suppressing STAT1 Phosphorylation. PMID:34960717
Possible Arbovirus Found in Virome of Melophagus ovinus. PMID:34960644
Dynamic, but Not Necessarily Disordered, Human-Virus Interactions Mediated through SLiMs in Viral Proteins. PMID:34960638
Constraint of Base Pairing on HDV Genome Evolution. PMID:34960619
Excess Vitamins or Imbalance of Folic Acid and Choline in the Gestational Diet Alter the Gut Microbiota and Obesogenic Effects in Wistar Rat Offspring. PMID:34960062
Distribution and Genetic Diversity of Hepatitis E Virus in Wild and Domestic Rabbits in Australia. PMID:34959591
Immunological and Genetic Investigation of SARS-CoV-2 Reinfection in an Otherwise Healthy, Young Marine Recruit. PMID:34959544
Molecular and Phylogenetic Characterisation of a Highly Divergent Novel Parvovirus (Psittaciform Chaphamaparvovirus 2) in Australian Neophema Parrots. PMID:34959514
Completing the Genome Sequence of Chlamydia pecorum Strains MC/MarsBar and DBDeUG: New Insights into This Enigmatic Koala (Phascolarctos cinereus) Pathogen. PMID:34959498
Cost-Effective Method to Perform SARS-CoV-2 Variant Surveillance: Detection of Alpha, Gamma, Lambda, Delta, Epsilon, and Zeta in Argentina. PMID:34957143
Genome Analysis of Lagocephalus sceleratus: Unraveling the Genomic Landscape of a Successful Invader. PMID:34956332
Sporidesmiellalignicola sp. nov., a new hyphomycetous fungus from freshwater habitats in China. PMID:34955666
Phylogeography Reveals Association between Swine Trade and the Spread of Porcine Epidemic Diarrhea Virus in China and across the World. PMID:34951645
Expanding the Menu: Are Polyphagy and Gene Family Expansions Linked across Lepidoptera? PMID:34951642
Phylogenomic analyses of the East Asian endemic Abelia (Caprifoliaceae) shed insights into the temporal and spatial diversification history with widespread hybridization. PMID:34950959
Long-lasting effects of chronic exposure to chemical pollution on the hologenome of the Manila clam. PMID:34950234
Prochlorococcus have low global mutation rate and small effective population size. PMID:34949817
Co-option of the same ancestral gene family gave rise to mammalian and reptilian toxins. PMID:34949191
Identification and Analysis of the AP2 Subfamily Transcription Factors in the Pecan (Carya illinoinensis). PMID:34948359
Evolution of RGF/GLV/CLEL Peptide Hormones and Their Roles in Land Plant Growth and Regulation. PMID:34948169
Comparative Mitogenomics of Fungal Species in Stachybotryaceae Provides Evolutionary Insights into Hypocreales. PMID:34948138
Additions to Lyophyllaceae s.l. from China. PMID:34947083
Phylogenetic Reassessment, Taxonomy, and Biogeography of Codinaea and Similar Fungi. PMID:34947079
Multilocus Phylogeography of the Tuber mesentericum Complex Unearths Three Highly Divergent Cryptic Species. PMID:34947072
Phylogenetic Relationships, Speciation, and Origin of Armillaria in the Northern Hemisphere: A Lesson Based on rRNA and Elongation Factor 1-Alpha. PMID:34947070
Geographical Origin Does Not Modulate Pathogenicity or Response to Climatic Variables of Fusarium oxysporum Associated with Vascular Wilt on Asparagus. PMID:34947038
Interactions among Escovopsis, Antagonistic Microfungi Associated with the Fungus-Growing Ant Symbiosis. PMID:34946990
The Mitochondrial Genome of a Freshwater Pelagic Amphipod Macrohectopus branickii Is among the Longest in Metazoa. PMID:34946978
Mitochondrial Genomes of the Genus Claassenia (Plecoptera: Perlidae) and Phylogenetic Assignment to Subfamily Perlinae. PMID:34946934
First Description of the Mitogenome and Phylogeny of Culicinae Species from the Amazon Region. PMID:34946932
New Mutations in HFE2 and TFR2 Genes Causing Non HFE-Related Hereditary Hemochromatosis. PMID:34946929
Signatures of Adaptation in Mitochondrial Genomes of Palearctic Subterranean Voles (Arvicolinae, Rodentia). PMID:34946894
Diverse Single-Stranded DNA Viruses Identified in Chicken Buccal Swabs. PMID:34946202
Detection of Systemic Canine Kobuvirus Infection in Peripheral Tissues and the Central Nervous System of a Fox Infected with Canine Distemper Virus. PMID:34946122
Mining the Genome of Bacillus velezensis VB7 (CP047587) for MAMP Genes and Non-Ribosomal Peptide Synthetase Gene Clusters Conferring Antiviral and Antifungal Activity. PMID:34946111
SHED-Dependent Oncogenic Signaling of the PEAK3 Pseudo-Kinase. PMID:34944965
Transposable Element Expression and Regulation Profile in Gonads of Interspecific Hybrids of Drosophila arizonae and Drosophila mojavensis wrigleyi. PMID:34944084
First Glimpse at the Diverse Aquaporins of Amphipod Crustaceans. PMID:34943925
Pan-Resistome Characterization of Uropathogenic Escherichia coli and Klebsiella pneumoniae Strains Circulating in Uganda and Kenya, Isolated from 2017-2018. PMID:34943759
First nosocomial cluster of COVID-19 due to the Delta variant in a major acute care hospital in Singapore: investigations and outbreak response. PMID:34942201
Functional conservation and divergence of the helix-turn-helix motif of E2 ubiquitin-conjugating enzymes. PMID:34942047
Loss of YhcB results in dysregulation of coordinated peptidoglycan, LPS and phospholipid synthesis during Escherichia coli cell growth. PMID:34941903
Patterns of Diversity of Fusarium Fungi Contaminating Soybean Grains. PMID:34941721
Physical Activity and Dietary Composition Relate to Differences in Gut Microbial Patterns in a Multi-Ethnic Cohort-The HELIUS Study. PMID:34940616
A New Mitochondrial Genome of Sogatella furcifera (Horváth) (Hemiptera: Delphacidae) and Mitogenome-Wide Investigation on Polymorphisms. PMID:34940154
Submergence of the filamentous Zygnematophyceae Mougeotia induces differential gene expression patterns associated with core metabolism and photosynthesis. PMID:34939169
Evolutionary innovations in Antarctic brittle stars linked to glacial refugia. PMID:34938519
Monocotyledonous plants graft at the embryonic root-shoot interface. PMID:34937943
Treponema pallidum genome sequencing from six continents reveals variability in vaccine candidate genes and dominance of Nichols clade strains in Madagascar. PMID:34936652
Source Tracking and Global Distribution of the Tigecycline Non-Susceptible tet(X). PMID:34935428
UCEasy: A software package for automating and simplifying the analysis of ultraconserved elements (UCEs). PMID:34934383
Mitochondrial genome of the critically endangered Baer's Pochard, Aythya baeri, and its phylogenetic relationship with other Anatidae species. PMID:34934156
A customised target capture sequencing tool for molecular identification of Aloe vera and relatives. PMID:34934068
Genetic data from the extinct giant rat from Tenerife (Canary Islands) points to a recent divergence from mainland relatives. PMID:34932923
Evolutionary footprints of a cold relic in a rapidly warming world. PMID:34930524
Genetic structure and evolutionary diversity of mating-type (MAT) loci in Hypsizygus marmoreus. PMID:34930496
Evolutionary Stability Optimizer (ESO): A Novel Approach to Identify and Avoid Mutational Hotspots in DNA Sequences While Maintaining High Expression Levels. PMID:34928133
Phylogenomic and mitogenomic data can accelerate inventorying of tropical beetles during the current biodiversity crisis. PMID:34927586
Pandemic-scale phylogenetics. PMID:34927180
The complete chloroplast genome of Ranunculus yunnanensis (Ranunculaceae). PMID:34926824
Complete mitogenome of Gymnocorymbus ternetzi (Characiformes: Characidae: Gymnocorymbus) and phylogenetic implications. PMID:34926823
Complete mitochondrial genomes of two sand diver species (Perciformes, Trichonotidae): novel gene orders and phylogenetic position within Gobiiformes. PMID:34926819
An atypical class of non-coding small RNAs is produced in rice leaves upon bacterial infection. PMID:34921170
Topology of the redox network during induction of photosynthesis as revealed by time-resolved proteomics in tobacco. PMID:34919428
Meta-transcriptomic analysis of the virome and microbiome of the invasive Indian myna (Acridotheres tristis) in Australia. PMID:34917744
The first true millipede-1306 legs long. PMID:34916527
Epidemiological characterisation of the first 785 SARS-CoV-2 Omicron variant cases in Denmark, December 2021. PMID:34915977
Omicron SARS-CoV-2 variant: Unique features and their impact on pre-existing antibodies. PMID:34915422
Whole-genome based strain identification of fowlpox virus directly from cutaneous tissue and propagated virus. PMID:34914770
The complete chloroplast genome of Acer negundo (Aceraceae). PMID:34912968
The complete mitochondrial genome of Tetramorium tsushimae (Emery, 1925) (Hymenoptera: Formicidae). PMID:34912965
Characteristics and phylogenetic analysis of the complete chloroplast genome of Lilium concolor Salisb. (Liliaceae) from Jilin, China. PMID:34912962
The complete chloroplast genome sequence of Artabotrys pilosus (Annonaceae). PMID:34912957
Complete chloroplast genome of the rare medicinal vegetable Allium hookeri. PMID:34912953
The complete chloroplast genome of Artocarpus tonkinensis, a tree native to China with diverse beneficial medicinal applications. PMID:34912952
CNVs with adaptive potential in Rangifer tarandus: genome architecture and new annotated assembly. PMID:34911809
Gut microbiota features associated with Clostridioides difficile colonization in dairy calves. PMID:34910727
Mapping the hidden diversity of the Geophagus sensu stricto species group (Cichlidae: Geophagini) from the Amazon basin. PMID:34909270
Genome-Wide Characterization of Zebrafish Endogenous Retroviruses Reveals Unexpected Diversity in Genetic Organizations and Functional Potentials. PMID:34908463
An infant burial from Arma Veirana in northwestern Italy provides insights into funerary practices and female personhood in early Mesolithic Europe. PMID:34907203
Reactivation of transposable elements following hybridization in fission yeast. PMID:34907076
Genomic analyses provide insights into spinach domestication and the genetic basis of agronomic traits. PMID:34903739
Transcriptomic analysis of resistance and short-term induction response to pyrethroids, in Anopheles coluzzii legs. PMID:34903168
Spatiotemporal Variations in Antarctic Protistan Communities Highlight Phytoplankton Diversity and Seasonal Dominance by a Novel Cryptophyte Lineage. PMID:34903046
Complete Chloroplast Genome Sequence of Sonchus brachyotus Helps to Elucidate Evolutionary Relationships with Related Species of Asteraceae. PMID:34901281
Sex-Specific Effects of Synbiotic Exposure in Mice on Addictive-Like Behavioral Alterations Induced by Chronic Alcohol Intake Are Associated With Changes in Specific Gut Bacterial Taxa and Brain Tryptophan Metabolism. PMID:34901109
Mutation of GmAITR Genes by CRISPR/Cas9 Genome Editing Results in Enhanced Salinity Stress Tolerance in Soybean. PMID:34899806
Chromosome-Scale Genome Assembly for Chinese Sour Jujube and Insights Into Its Genome Evolution and Domestication Signature. PMID:34899800
Sage Insights Into the Phylogeny of Salvia: Dealing With Sources of Discordance Within and Across Genomes. PMID:34899789
Polar Cryoconite Associated Microbiota Is Dominated by Hemispheric Specialist Genera. PMID:34899626
Fungal diversity notes 1387-1511: taxonomic and phylogenetic contributions on genera and species of fungal taxa. PMID:34899100
Genetic differentiation of Xylella fastidiosa following the introduction into Taiwan. PMID:34898423
Genetic diversity of Anopheles stephensi in Ethiopia provides insight into patterns of spread. PMID:34895319
Chloroplast genome sequencing based on genome skimming for identification of Eriobotryae Folium. PMID:34895202
Biological factors in the synthetic construction of overlapping genes. PMID:34895142
Genome Stability Is in the Eye of the Beholder: CR1 Retrotransposon Activity Varies Significantly across Avian Diversity. PMID:34894225
Ubiquity and Origins of Structural Maintenance of Chromosomes (SMC) Proteins in Eukaryotes. PMID:34894224
Deep Conservation of Histone Variants in Thermococcales Archaea. PMID:34894218
New genetic data reveals a new species of Zospeum in Bosnia (Gastropoda, Ellobioidea, Carychiinae). PMID:34887699
Evolution of a histone variant involved in compartmental regulation of NAD metabolism. PMID:34887560
Transporter Protein-Guided Genome Mining for Head-to-Tail Cyclized Bacteriocins. PMID:34885800
Phylogenomic and Microsynteny Analysis Provides Evidence of Genome Arrangements of High-Affinity Nitrate Transporter Gene Families of Plants. PMID:34884876
Evolution of a novel cell type in Dictyostelia required gene duplication of a cudA-like transcription factor. PMID:34883046
Functional characterisation of substrate-binding proteins to address nutrient uptake in marine picocyanobacteria. PMID:34882230
Centromere-Specific Retrotransposons and Very-Long-Chain Fatty Acid Biosynthesis in the Genome of Yellowhorn (Xanthoceras sorbifolium, Sapindaceae), an Oil-Producing Tree With Significant Drought Resistance. PMID:34880890
Comparative Genomics Analyses Support the Reclassification of Bisgaard Taxon 40 as Mergibacter gen. nov., With Mergibacter septicus sp. nov. as Type Species: Novel Insights Into the Phylogeny and Virulence Factors of a Pasteurellaceae Family Member Associated With Mortality Events in Seabirds. PMID:34880834
A unique flavoenzyme operates in ubiquinone biosynthesis in photosynthesis-related eukaryotes. PMID:34878842
The Archaeal Transcription Termination Factor aCPSF1 is a Robust Phylogenetic Marker for Archaeal Taxonomy. PMID:34878325
Putative Familial Transmissible Bacteria of Various Body Niches Link with Home Environment and Children's Immune Health. PMID:34878304
Whole-Genome Sequencing Highlights Conservative Genomic Strategies of a Stress-Tolerant, Long-Lived Scleractinian Coral, Porites australiensis Vaughan, 1918. PMID:34878117
Proteome and strain analysis of cyanobacterium Candidatus "Phormidium alkaliphilum" reveals traits for success in biotechnology. PMID:34877483
Phylogeography of Iris loczyi (Iridaceae) in Qinghai-Tibet Plateau revealed by chloroplast DNA and microsatellite markers. PMID:34876969
PAAR Proteins Are Versatile Clips That Enrich the Antimicrobial Weapon Arsenals of Prokaryotes. PMID:34874775
Complete chloroplast genome of Stephania tetrandra (Menispermaceae) from Zhejiang Province: insights into molecular structures, comparative genome analysis, mutational hotspots and phylogenetic relationships. PMID:34872502
Mutational landscape of SARS-CoV-2 genome in Turkey and impact of mutations on spike protein structure. PMID:34871297
The complete chloroplast genome of Casuarina cunninghamiana (Casuarinaceae). PMID:34869899
Characterization of Pinus densiflora var. zhangwuensis S.J.Zhang, C.X.Li & X.Y.Yuan complete chloroplast genome. PMID:34869897
Characterization of the complete chloroplast genome of Cycas hongheensis (Cycadaceae), an endemic species in the red river region of China. PMID:34869896
The complete chloroplast genome of Petasites japonicus (Siebold & Zucc.) Maxim. (Asteraceae). PMID:34869892
The complete mitochondrial genome of the cocoa tussock moth Orgyia postica Walker, 1855 (Lepidoptera: Lymantriidae). PMID:34869890
The complete chloroplast genome sequence of Clivia miniata var. citrina. PMID:34869885
The complete chloroplast genome sequence of Hordeum distichon (Poales: Poaceae). PMID:34869884
Complete chloroplast genome sequence and phylogenetic analysis of Ilex pernyi Franch. PMID:34869882
The complete chloroplast genome sequence of Adenophora kayasanensis Kitam. (Campanulaceae), an endemic to Korea. PMID:34869881
The complete chloroplast genome of Callicarpa longifolia Lamk. var. floccosa Schauer (Lamiaceae). PMID:34869880
Characterization of the complete chloroplast genome of Pteris multifida Poir. 1804 and its phylogenetic analysis. PMID:34869879
The complete chloroplast genome sequence of Athrotaxis cupressoides. PMID:34869878
The complete chloroplast genome sequence of Platanus × hispanica from Sichuan province, China, a medicinal plant and phylogenetic analysis. PMID:34869877
The chloroplast genome of Fallopia aubertii (Polygonaceae) from Xining, China. PMID:34869874
The complete chloroplast genome sequence and phylogenetic analysis of Sudan grass (Sorghum bicolor subsp. drummondii) cultivar Sa (Poaceae) from Anhui province, China. PMID:34869873
Characterization of the complete chloroplast genome of Arachis pintoi Krapov. & W.C.Greg., a perennial leguminous forage. PMID:34869871
Complete chloroplast genome of Sphagnum subsecundum Nees from Korea. PMID:34869865
The History and Diversity of Rice Domestication as Resolved From 1464 Complete Plastid Genomes. PMID:34868182
High-Quality Genomes and High-Density Genetic Map Facilitate the Identification of Genes From a Weedy Rice. PMID:34868173
Chromosome-Scale Reference Genome of Amphicarpaea edgeworthii: A New Resource for Amphicarpic Plants Research and Complex Flowering Pattern. PMID:34868169
Evolution of Rosaceae Plastomes Highlights Unique Cerasus Diversification and Independent Origins of Fruiting Cherry. PMID:34868119
Phylogenetic Relatedness and Genome Structure of Yersinia ruckeri Revealed by Whole Genome Sequencing and a Comparative Analysis. PMID:34867924
Identification of CRF66_BF, a New HIV-1 Circulating Recombinant Form of South American Origin. PMID:34867914
Characterization of a Novel Hypotrich Ciliate From Heavy Metal-Contaminated Industrial Outlet in Onsan, Ulsan, South Korea. PMID:34867893
Description of the First Four Species of the Genus Pseudogymnoascus From Antarctica. PMID:34867840
Identification and Characterization of a Novel Chromosomal Aminoglycoside 2'-N-Acetyltransferase, AAC(2')-If, From an Isolate of a Novel Providencia Species, Providencia wenzhouensis R33. PMID:34867838
Predominance of non-Streptococcus mutans bacteria in dental biofilm and its relation to caries progression. PMID:34867042
Rice Cell Division Cycle 20s are required for faithful chromosome segregation and cytokinesis during meiosis. PMID:34865119
MicroRNAs as Indicators into the Causes and Consequences of Whole-Genome Duplication Events. PMID:34865078
Viral Haplotypes in COVID-19 Patients Associated With Prolonged Viral Shedding. PMID:34858866
The Gene Rearrangement, Loss, Transfer, and Deep Intronic Variation in Mitochondrial Genomes of Conidiobolus. PMID:34858376
Morphology of obligate ectosymbionts reveals Paralaxus gen. nov.: A new circumtropical genus of marine stilbonematine nematodes. PMID:34857981
Heat stress reduces the contribution of diazotrophs to coral holobiont nitrogen cycling. PMID:34857934
Ecological changes have driven biotic exchanges across the Indian Ocean. PMID:34857837
Outbreak of P.3 (Theta) SARS-CoV-2 emerging variant of concern among service workers in Louisiana. PMID:34856435
Patient health records and whole viral genomes from an early SARS-CoV-2 outbreak in a Quebec hospital reveal features associated with favorable outcomes. PMID:34855869
Coding-Complete Genome Sequences of Alpha and Delta SARS-CoV-2 Variants from Kamphaeng Phet Province, Thailand, from May to July 2021. PMID:34854728
Polyphenol Utilization Proteins in the Human Gut Microbiome. PMID:34851722
A Conserved Histophilus somni 23S Intervening Sequence Yields Functional, Fragmented 23S rRNA. PMID:34851158
The Birth-and-Death Evolution of Cytochrome P450 Genes in Bees. PMID:34850870
Discovery of new vascular disrupting agents based on evolutionarily conserved drug action, pesticide resistance mutations, and humanized yeast. PMID:34849907
The Tetragnatha kauaiensis Genome Sheds Light on the Origins of Genomic Novelty in Spiders. PMID:34849853
Long-read transcriptome and other genomic resources for the angiosperm Silene noctiflora. PMID:34849814
Phylogenetic relationships and codon usage bias amongst cluster K mycobacteriophages. PMID:34849792
The whole-genome sequence of the novel yeast species Metschnikowia persimmonesis isolated from medicinal plant Diospyros kaki Thunb. PMID:34849782
Haplotype distribution of SARS-CoV-2 variants in low and high vaccination rate countries during ongoing global COVID-19 pandemic in early 2021. PMID:34848355
Genomic monitoring of the SARS-CoV-2 B1.1.7 (WHO VOC Alpha) in the Sao Paulo state, Brazil. PMID:34848213
Wheat in vivo RNA structure landscape reveals a prevalent role of RNA structure in modulating translational subgenome expression asymmetry. PMID:34847934
Evolution of ColE1-like plasmids across γ-Proteobacteria: From bacteriocin production to antimicrobial resistance. PMID:34847155
Evolutionary dynamics of HIV-1 subtype C in Brazil. PMID:34845263
Relative model selection of evolutionary substitution models can be sensitive to multiple sequence alignment uncertainty. PMID:34844571
Characterization of the blood microbiota in children with Celiac disease. PMID:34841359
Gene sharing among plasmids and chromosomes reveals barriers for antibiotic resistance gene transfer. PMID:34839702
Diversification of plasmids in a genus of pathogenic and nitrogen-fixing bacteria. PMID:34839700
Intraspecific antagonism through viral toxin encoded by chronic Sulfolobus spindle-shaped virus. PMID:34839697
Epidemiological associations with genomic variation in SARS-CoV-2. PMID:34837008
Chloranthus genome provides insights into the early diversification of angiosperms. PMID:34836973
Population analysis of retrotransposons in giraffe genomes supports RTE decline and widespread LINE1 activity in Giraffidae. PMID:34836553
Minnesota peat viromes reveal terrestrial and aquatic niche partitioning for local and global viral populations. PMID:34836550
First Report of CC5-MRSA-IV-SCCfus "Maltese Clone" in Bat Guano. PMID:34835390
Genomic Analysis of Prophages from Klebsiella pneumoniae Clinical Isolates. PMID:34835377
Zoonotic Cryptosporidium spp. in Wild Rodents and Shrews. PMID:34835368
A Multidisciplinary Approach to Unraveling the Natural Product Biosynthetic Potential of a Streptomyces Strain Collection Isolated from Leaf-Cutting Ants. PMID:34835350
Active Surveillance for Highly Pathogenic Avian Influenza Viruses in Wintering Waterbirds in Northeast Italy, 2020-2021. PMID:34835314
Full Viral Genome Sequencing and Phylogenomic Analysis of Feline Herpesvirus Type 1 (FHV-1) in Cheetahs (Acinonyx jubatus). PMID:34835113
Analyses of Leishmania-LRV Co-Phylogenetic Patterns and Evolutionary Variability of Viral Proteins. PMID:34835111
The Distribution and Composition of Vector Abundance in Hanoi City, Vietnam: Association with Livestock Keeping and Flavivirus Detection. PMID:34835097
Virome Analysis of Signal Crayfish (Pacifastacus leniusculus) along Its Invasion Range Reveals Diverse and Divergent RNA Viruses. PMID:34835065
Tolerance and Persistence of Ebola Virus in Primary Cells from Mops condylurus, a Potential Ebola Virus Reservoir. PMID:34834992
The Evolutionary Landscape of SARS-CoV-2 Variant B.1.1.519 and Its Clinical Impact in Mexico City. PMID:34834987
A High Rate Algal Pond Hosting a Dynamic Community of RNA Viruses. PMID:34834969
Genetic Analysis of SARS-CoV-2 Variants in Mexico during the First Year of the COVID-19 Pandemic. PMID:34834967
First Genomic Evidence of Dual African Swine Fever Virus Infection: Case Report from Recent and Historical Outbreaks in Sardinia. PMID:34834952
Clusters of SARS-CoV-2 Lineage B.1.1.7 Infection after Vaccination with Adenovirus-Vectored and Inactivated Vaccines. PMID:34834934
Metagenomic Identification of Viral Sequences in Laboratory Reagents. PMID:34834931
Phylogeny of Maleae (Rosaceae) Based on Complete Chloroplast Genomes Supports the Distinction of Aria, Chamaemespilus and Torminalis as Separate Genera, Different from Sorbus sp. PMID:34834899
Identification and Comparison of Colletotrichum Secreted Effector Candidates Reveal Two Independent Lineages Pathogenic to Soybean. PMID:34832675
Identification of CTX-M Type ESBL E. coli from Sheep and Their Abattoir Environment Using Whole-Genome Sequencing. PMID:34832635
Retrospective Genotyping and Whole Genome Sequencing of a Canine Parvovirus Outbreak in Bangladesh. PMID:34832529
Two New Species of Fibrodontia (Trechisporales, Basidiomycota) with a Key to Worldwide Species. PMID:34829269
Phylogenetic and Functional Diversity of Saprolegniales and Fungi Isolated from Temperate Lakes in Northeast Germany. PMID:34829255
Morphological Variety in Distoseptispora and Introduction of Six Novel Species. PMID:34829232
Novel Botrytis and Cladosporium Species Associated with Flower Diseases of Macadamia in Australia. PMID:34829187
Occurrence and Morpho-Molecular Identification of Botryosphaeriales Species from Guizhou Province, China. PMID:34829182
Morphology and Phylogeny Reveal Vamsapriyaceae fam. nov. (Xylariales, Sordariomycetes) with Two Novel Vamsapriya Species. PMID:34829180
Sequencing of the Complete Mitochondrial Genome of Pingus sinensis (Spirurina: Quimperiidae): Gene Arrangements and Phylogenetic Implications. PMID:34828378
Phylodynamic and Recombination Analyses of Avian Infectious Bronchitis GI-23 Reveal a Widespread Recombinant Cluster and New Among-Countries Linkages. PMID:34827914
Chloroplast genome characteristics and phylogenetic analysis of the medicinal plant Blumea balsamifera (L.) DC. PMID:34826835
Amilorides inhibit SARS-CoV-2 replication in vitro by targeting RNA structures. PMID:34826236
Emergence, prevalence, and evolution of H5N8 avian influenza viruses in central China, 2020. PMID:34825854
Adding pieces to the puzzle: insights into diversity and distribution patterns of Cumacea (Crustacea: Peracarida) from the deep North Atlantic to the Arctic Ocean. PMID:34824910
Love bites: male frogs (Plectrohyla, Hylidae) use teeth scratching to deliver sodefrin precursor-like factors to females during amplexus. PMID:34823558
Enhanced fusogenicity and pathogenicity of SARS-CoV-2 Delta P681R mutation. PMID:34823256
Initial Phylotranscriptomic Confirmation of Homoplastic Evolution of the Conspicuous Coloration and Bufoniform Morphology of Pumpkin-Toadlets in the Genus Brachycephalus. PMID:34822600
The First Eight Mitogenomes of Leaf-Mining Dactylispa Beetles (Coleoptera: Chrysomelidae: Cassidinae) Shed New Light on Subgenus Relationships. PMID:34821805
Comparative hologenomics of two Ixodes scapularis tick populations in New Jersey. PMID:34820166
Virus-derived sequences from the transcriptomes of two snail vectors of schistosomiasis, Biomphalaria pfeifferi and Bulinus globosus from Kenya. PMID:34820163
Genome-Wide Analysis of CCT Transcript Factors to Identify Genes Contributing to Photoperiodic Flowering in Oryza rufipogon. PMID:34819938
Mitogenomics of historical type specimens clarifies the taxonomy of Ethiopian Ptychadena Boulenger, 1917 (Anura, Ptychadenidae). PMID:34819775
Highly flexible metabolism of the marine euglenozoan protist Diplonema papillatum. PMID:34819072
Heliorhodopsin Evolution Is Driven by Photosensory Promiscuity in Monoderms. PMID:34817235
LinearTurboFold: Linear-Time Global Prediction of Conserved Structures for RNA Homologs with Applications to SARS-CoV-2. PMID:34816262
Neottia wuyishanensis (Orchidaceae: Neottieae), a new species from Fujian, China. PMID:34816068
Morphological and genomic evidence for a new species of Corallorhiza (Orchidaceae: Epidendroideae) from SW China. PMID:34816066
Chloroplast genomic diversity in Bulbophyllum section Macrocaulia (Orchidaceae, Epidendroideae, Malaxideae): Insights into species divergence and adaptive evolution. PMID:34816061
Phylogenetic diversity and conservation of crop wild relatives in Colombia. PMID:34815742
Phylogenetic analyses and morphological characters reveal two new species of Ganoderma from Yunnan province, China. PMID:34815729
Unexpected cryptic species among streptophyte algae most distant to land plants. PMID:34814752
Using the Evolutionary History of Proteins to Engineer Insertion-Deletion Mutants from Robust, Ancestral Templates Using Graphical Representation of Ancestral Sequence Predictions (GRASP). PMID:34813061
Fungal canker agents in apple production hubs of Iran. PMID:34811444
Divergence time estimation of Galliformes based on the best gene shopping scheme of ultraconserved elements. PMID:34809586
The evolution of the metazoan Toll receptor family and its expression during protostome development. PMID:34809567
A new strain of Volutella citrinella with nematode predation and nematicidal activity, isolated from the cysts of potato cyst nematodes in China. PMID:34809566
Surface‒Aerosol Stability and Pathogenicity of Diverse Middle East Respiratory Syndrome Coronavirus Strains, 2012‒2018. PMID:34808078
Protocol for design, construction, and selection of genome phage (gPhage) display libraries. PMID:34806047
Characterization of the complete mitochondrial genome of Otus lettia: exploring the mitochondrial evolution and phylogeny of owls (Strigiformes). PMID:34805524
The complete chloroplast genome sequence of Viola verecunda (Violaceae). PMID:34805517
The complete plastid genome of Selaginella erythropus (Selaginellaceae), a species with distinctive giant chloroplasts. PMID:34805514
The complete chloroplast genome sequence of Sedum lineare (crassulaceae). PMID:34805513
Tick virome diversity in Hubei Province, China, and the influence of host ecology. PMID:34804590
Poorly Conserved P15 Proteins of Cileviruses Retain Elements of Common Ancestry and Putative Functionality: A Theoretical Assessment on the Evolution of Cilevirus Genomes. PMID:34804105
Comparative Analysis of Chloroplast Genomes of Seven Chaetoceros Species Revealed Variation Hotspots and Speciation Time. PMID:34803961
Global Distribution and Richness of Armillaria and Related Species Inferred From Public Databases and Amplicon Sequencing Datasets. PMID:34803949
High-Temperature-Tolerant Fungus and Oomycetes in Korea, Including Saksenaea longicolla sp. nov. PMID:34803436
Malonyl-acyl carrier protein decarboxylase activity promotes fatty acid and cell envelope biosynthesis in Proteobacteria. PMID:34801557
Comparative analysis of transposable elements provides insights into genome evolution in the genus Camelus. PMID:34800971
Comparative genomic analysis reveals varying levels of mammalian adaptation to coronavirus infections. PMID:34793437
Segregating Complete Tf2 Elements Are Largely Neutral in Fission Yeast. PMID:34791222
Prototheca-ID: a web-based application for molecular identification of Prototheca species. PMID:34791104
MAGUS+eHMMs: Improved Multiple Sequence Alignment Accuracy for Fragmentary Sequences. PMID:34791036
Characterization of the complete chloroplast genome of Salvia leucantha (Lamiaceae). PMID:34790877
The complete chloroplast genome sequence of the medicinal plant Cercis chinensis and phylogenetic analysis. PMID:34790876
Characterization of the complete plastid genome of of Veronica eriogyne H. Winkl., a Tibetan medicinal herb. PMID:34790875
The complete plastome of the South African species, Amaryllis belladonna L. (Amaryllidaceae). PMID:34790872
Complete chloroplast genome of Baccaurea ramiflora (phyllanthaceae), a promising underutilized species. PMID:34790869
Complete chloroplast genome sequence of 'Field Muskmelon,' an invasive weed to China. PMID:34790867
Evolution Analyses of CAMTA Transcription Factor in Plants and Its Enhancing Effect on Cold-tolerance. PMID:34790215
Metagenomic Analysis of Biocide-Treated Neotropical Oil Reservoir Water Unveils Microdiversity of Thermophile Tepidiphilus. PMID:34790180
Three new Russula species in sect. Ingratae (Russulales, Basidiomycota) from southern China. PMID:34790027
Two novel species and two new records of Distoseptispora from freshwater habitats in China and Thailand. PMID:34790026
Single cell genomics reveals plastid-lacking Picozoa are close relatives of red algae. PMID:34789758
Re-emergence of Gamma-like-II and emergence of Gamma-S:E661D SARS-CoV-2 lineages in the south of Brazil after the 2021 outbreak. PMID:34789293
Prolonged SARS-CoV-2 Positivity in Immunocompetent Patients: Virus Isolation, Genomic Integrity, and Transmission Risk. PMID:34787498
CRISPR-Cas12a-Based Detection for the Major SARS-CoV-2 Variants of Concern. PMID:34787487
Emergence, Evolution, and Pathogenicity of Influenza A(H7N4) Virus in Shorebirds in China. PMID:34787451
Antimicrobial Resistance in Enterococcus Spp. Isolated from a Beef Processing Plant and Retail Ground Beef. PMID:34787441
Organ-specific genome diversity of replication-competent SARS-CoV-2. PMID:34785663
Hearing loss genes reveal patterns of adaptive evolution at the coding and non-coding levels in mammals. PMID:34784928
The evolution of body size in termites. PMID:34784763
Systematic exploration of Escherichia coli phage-host interactions with the BASEL phage collection. PMID:34784345
Comparative genomic study on the complete plastomes of four officinal Ardisia species in China. PMID:34782652
A comparative analysis of L1 retrotransposition activities in human genomes suggests an ongoing increase in L1 number despite an evolutionary trend towards lower activity. PMID:34782009
HIV Proviral Burden, Genetic Diversity, and Dynamics in Viremic Controllers Who Subsequently Initiated Suppressive Antiretroviral Therapy. PMID:34781741
Infection, recovery and re-infection of farmed mink with SARS-CoV-2. PMID:34780574
Anaerobic peroxisomes in Entamoeba histolytica metabolize myo-inositol. PMID:34780573
The Diversity Patterns of Rare to Abundant Microbial Eukaryotes Across a Broad Range of Salinities in a Solar Saltern. PMID:34779881
Chloroplast genome of Tillandsia landbeckii Phil. (Bromeliaceae) a species adapted to the hyper-arid conditions of the Atacama and Peruvian desert. PMID:34778557
Modelling the active SARS-CoV-2 helicase complex as a basis for structure-based inhibitor design. PMID:34777769
Wild bird trade at live poultry markets potentiates risks of avian influenza virus introductions in Iran. PMID:34777715
Genomic Epidemiology Reveals Multiple Introductions of Severe Acute Respiratory Syndrome Coronavirus 2 in Niigata City, Japan, Between February and May 2020. PMID:34777297
Genomic Epidemiology and Antimicrobial Susceptibility Profile of Enterotoxigenic Escherichia coli From Outpatients With Diarrhea in Shenzhen, China, 2015-2020. PMID:34777281
Sargassum Differentially Shapes the Microbiota Composition and Diversity at Coastal Tide Sites and Inland Storage Sites on Caribbean Islands. PMID:34777271
Mitochondrial genomes of two parasitic Cuscuta species lack clear evidence of horizontal gene transfer and retain unusually fragmented ccmFC genes. PMID:34772334
Transcriptome Profiling of Cu Stressed Petunia Petals Reveals Candidate Genes Involved in Fe and Cu Crosstalk. PMID:34769033
Species Phylogeny versus Gene Trees: A Case Study of an Incongruent Data Matrix Based on Paphiopedilum Pfitz. (Orchidaceae). PMID:34768824
The SR Splicing Factors: Providing Perspectives on Their Evolution, Expression, Alternative Splicing, and Function in Populus trichocarpa. PMID:34768799
Control of lysosomal-mediated cell death by the pH-dependent calcium channel RECS1. PMID:34767445
Multiomics study of a heterotardigrade, Echinisicus testudo, suggests the possibility of convergent evolution of abundant heat-soluble proteins in Tardigrada. PMID:34763673
Convergent adaptation of Saccharomyces uvarum to sulfite, an antimicrobial preservative widely used in human-driven fermentations. PMID:34762651
Evolutionary history of the vertebrate Piwi gene family. PMID:34760405
In silico identification, characterization expression profile of WUSCHEL-Related Homeobox (WOX) gene family in two species of kiwifruit. PMID:34760371
The inconsistent microbiota of Budu, the Malaysian fermented anchovy sauce, revealed through 16S amplicon sequencing. PMID:34760368
Species Diversity and Chemotypes of Fusarium Species Associated With Maize Stalk Rot in Yunnan Province of Southwest China. PMID:34759893
Two new species of Jalapriya and a new record, Dictyocheirosporavinaya from freshwater habitats in China. PMID:34759731
The complete mitogenome of Curculiochinensis (Chevrolat, 1878) (Coleoptera: Curculionidae: Curculioninae). PMID:34759727
Scaffolding protein CcmM directs multiprotein phase separation in β-carboxysome biogenesis. PMID:34759380
Evolutionary genomics of APSE: a tailed phage that lysogenically converts the bacterium Hamiltonella defensa into a heritable protective symbiont of aphids. PMID:34758862
Sampling the fish gill microbiome: a comparison of tissue biopsies and swabs. PMID:34758745
Antigenic Distance between North American Swine and Human Seasonal H3N2 Influenza A Viruses as an Indication of Zoonotic Risk to Humans. PMID:34757846
Changing predominant SARS-CoV-2 lineages drives successive COVID-19 waves in Malaysia, February 2020 to March 2021. PMID:34757638
Phylogeny of Crataegus (Rosaceae) based on 257 nuclear loci and chloroplast genomes: evaluating the impact of hybridization. PMID:34754629
Unraveling gene content variation across eukaryotic giant viruses based on network analyses and host associations. PMID:34754514
Frequent intergenotypic recombination between the non-structural and structural genes is a major driver of epidemiological fitness in caliciviruses. PMID:34754513
A novel SARS-CoV-2 related coronavirus in bats from Cambodia. PMID:34753934
An ancient retroviral RNA element hidden in mammalian genomes and its involvement in co-opted retroviral gene regulation. PMID:34753509
Characterization of a P-glycoprotein drug transporter from Toxocara canis with a novel pharmacological profile. PMID:34753107
ViroidDB: a database of viroids and viroid-like circular RNAs. PMID:34751403
A computational screen for alternative genetic codes in over 250,000 genomes. PMID:34751130
Discovery of nondiazotrophic Trichodesmium species abundant and widespread in the open ocean. PMID:34750267
A new cluster of rhabdovirus detected in field-caught sand flies (Diptera: Psychodidae: Phlebotominae) collected from southern Thailand. PMID:34749797
The transposable element-rich genome of the cereal pest Sitophilus oryzae. PMID:34749730
RESCRIPt: Reproducible sequence taxonomy reference database management. PMID:34748542
AMDB: a database of animal gut microbial communities with manually curated metadata. PMID:34747470
The complete mitogenome of the Paranticopsis xenocles (Lepidoptera: Papilionidae: Papilioninae) and phylogenetic implications. PMID:34746410
The complete chloroplast genome sequence of Myricaria elegans: an endemic species to the Himalayas. PMID:34746409
The complete chloroplast genome of Agapanthus praecox (Agapanthaceae), an ornamental and medicinal plant. PMID:34746404
The complete chloroplast genome and phylogenetic analysis of Corydalis fangshanensis W.T. Wang ex S.Y. He (Papaveraceae). PMID:34746395
Characterization of the complete chloroplast genome of Ammopiptanthus mongolicus (Leguminosae). PMID:34746393
The complete chloroplast genome and phylogenetic analysis of Artocarpus champeden. PMID:34746388
The complete chloroplast genome and phylogenetic analysis of Sida szechuensis matsuda (Malvaceae). PMID:34746387
Characterization of the complete chloroplast genome of Tabernaemontana divaricate (Apocynaceae), a valuable and endangered plant. PMID:34746383
A New Protocruzia Species (Ciliophora: Protocruziida) Isolated From the Mariana Trench Area. PMID:34745044
The Subcellular Proteome of a Planctomycetes Bacterium Shows That Newly Evolved Proteins Have Distinct Fractionation Patterns. PMID:34745019
Gut microbiota of adults with asthma is broadly similar to non-asthmatics in a large population with varied ethnic origins. PMID:34743654
Insecticide resistance by a host-symbiont reciprocal detoxification. PMID:34741016
A whole genome duplication drives the genome evolution of Phytophthora betacei, a closely related species to Phytophthora infestans. PMID:34740326
Discovery of novel fish papillomaviruses: From the Antarctic to the commercial fish market. PMID:34739918
Phylogenetic and Ancestral Sequence Reconstruction of SARS-CoV-2 Reveals Latent Capacity to Bind Human ACE2 Receptor. PMID:34739551
A survey of substrate specificity among Auxiliary Activity Family 5 copper radical oxidases. PMID:34738149
The origin and impeded dissemination of the DNA phosphorothioation system in prokaryotes. PMID:34737280
Within-host evolution of SARS-CoV-2 in an immunosuppressed COVID-19 patient as a source of immune escape variants. PMID:34737266
Invasive Amphibian Gut Microbiota and Functions Shift Differentially in an Expanding Population but Remain Conserved Across Established Populations. PMID:34735604
Origin, loss, and regain of self-incompatibility in angiosperms. PMID:34735009
Nitzschia anatoliensis sp. nov., a cryptic diatom species from the highly alkaline Van Lake (Turkey). PMID:34733585
Mitochondrial Phylogenomics of Fagales Provides Insights Into Plant Mitogenome Mosaic Evolution. PMID:34733309
Fuzzy species borders of glacial survivalists in the Carpathian biodiversity hotspot revealed using a multimarker approach. PMID:34732763
Underwater CAM photosynthesis elucidated by Isoetes genome. PMID:34732722
The taxonomy of the Trichophyton rubrum complex: a phylogenomic approach. PMID:34730487
Insights on the SARS-CoV-2 genome variability: the lesson learned in Brazil and its impacts on the future of pandemics. PMID:34730486
Macroevolutionary pattern of Saussurea (Asteraceae) provides insights into the drivers of radiating diversification. PMID:34727720
New highly antigenic linear B cell epitope peptides from PvAMA-1 as potential vaccine candidates. PMID:34727117
High rates of evolution preceded shifts to sex-biased gene expression in Leucadendron, the most sexually dimorphic angiosperms. PMID:34726596
Recurrent mutations promote widespread structural and functional divergence of MULE-derived genes in plants. PMID:34725701
Epidemiological dynamics of SARS-CoV-2 VOC Gamma in Rio de Janeiro, Brazil. PMID:34725568
Variation and Evolution of the Whole Chloroplast Genomes of Fragaria spp. (Rosaceae). PMID:34721483
Characterization of the Brassica napus Flavonol Synthase Gene Family Reveals Bifunctional Flavonol Synthases. PMID:34721462
Phylogenomics of Salvia L. subgenus Calosphace (Lamiaceae). PMID:34721456
Pyomelanin-Producing Brevundimonas vitisensis sp. nov., Isolated From Grape (Vitis vinifera L.). PMID:34721332
Ophiostomatoid species associated with pine trees (Pinus spp.) infested by Cryphaluspiceae from eastern China, including five new species. PMID:34720643
Euphorbiambuinzauensis, a new succulent species in Kenya from the Synadenium group in Euphorbiasect.Monadenium (Euphorbiaceae). PMID:34720628
Leaf epidermal micromorphology defining the clades in Cinnamomum (Lauraceae). PMID:34720625
A new species of freshwater crab of the genus Nanhaipotamon Bott, 1968 (Crustacea, Decapoda, Brachyura, Potamidae) from Longhai, Fujian Province, China. PMID:34720615
Spatiotemporal Evolution of the Global Species Diversity of Rhododendron. PMID:34718707
Heterogeneity in the transcriptional response of the human pathogen Aspergillus fumigatus to the antifungal agent caspofungin. PMID:34718550
Comparative genomic and transcriptomic analyses of transposable elements in polychaetous annelids highlight LTR retrotransposon diversity and evolution. PMID:34715903
Characterization of the complete chloroplast genome of Hedysarum polybotrys var. alaschanicum (Fabaceae) and its phylogeny. PMID:34712819
The complete chloroplast genome sequences of an endemic species of Urticaceae (Debregeasia hekouensis). PMID:34712817
Sequencing and phylogenetic analysis of the complete chloroplast genome of Arisaema heterophyllum Blume. PMID:34712816
The complete chloroplast genome of Arisaema bockii Engler and its phylogenetic analysis in the family Araceae. PMID:34712813
The complete chloroplast genome of Callicarpa rubella Lindl. (Lamiaceae) from Guangxi, China: genome structure and phylogenetic analysis. PMID:34712812
Characterization of the complete chloroplast genome of Astragalus galactites (Fabaceae). PMID:34712811
The complete chloroplast genome of Pseudognaphalium affine (D.Don) Anderb. (Asteraceae). PMID:34712810
The complete mitochondrial genome of Tylonycteris fulvida (Chiroptera: Vespertilionidae) in South China. PMID:34712809
The complete chloroplast genome of Arcangelisia gusanlung H.S.Lo (Menispermaceae), an important traditional medicine from South China. PMID:34712807
The complete chloroplast genome sequence of spleen amaranth (Amaranthus dubius Mart. ex Thell., Amaranthaceae). PMID:34712806
The complete chloroplast genome of Agave angustifolia. PMID:34712803
Rapid Increase of Oral Bacteria in Nasopharyngeal Microbiota After Antibiotic Treatment in Children With Invasive Pneumococcal Disease. PMID:34712623
Uncovering the genetic diversity within the Aedes notoscriptus virome and isolation of new viruses from this highly urbanised and invasive mosquito. PMID:34712491
MOSGA 2: Comparative genomics and validation tools. PMID:34712396
The Aphelenchus avenae genome highlights evolutionary adaptation to desiccation. PMID:34711923
Contribution of historical herbarium small RNAs to the reconstruction of a cassava mosaic geminivirus evolutionary history. PMID:34711837
The treasure inside barley seeds: microbial diversity and plant beneficial bacteria. PMID:34711269
Plastid phylogenomic insights into relationships of all flowering plant families. PMID:34711223
Complete genomic sequence and phylogenomics analysis of Agrobacterium strain AB2/73: a new Rhizobium species with a unique mega-Ti plasmid. PMID:34711172
Genotype I African swine fever viruses emerged in domestic pigs in China and caused chronic infection. PMID:34709128
Incidence Trends for SARS-CoV-2 Alpha and Beta Variants, Finland, Spring 2021. PMID:34708686
Phylogenetic significance of the characteristics of simple sequence repeats at the genus level based on the complete chloroplast genome sequences of Cyatheaceae. PMID:34707858
An insight into molecular taxonomy of bufonids, microhylids, and dicroglossid frogs: First genetic records from Pakistan. PMID:34707849
On the Species Delimitation of the Maddenia Group of Prunus (Rosaceae): Evidence From Plastome and Nuclear Sequences and Morphology. PMID:34707629
Phylogenomic Analysis Substantiates the gyrB Gene as a Powerful Molecular Marker to Efficiently Differentiate the Most Closely Related Genera Myxococcus, Corallococcus, and Pyxidicoccus. PMID:34707598
The complete mitochondrial genome of Microphysogobioelongatus (Teleostei, Cyprinidae) and its phylogenetic implications. PMID:34707452
A small number of early introductions seeded widespread transmission of SARS-CoV-2 in Québec, Canada. PMID:34706766
Monophyletic blowflies revealed by phylogenomics. PMID:34706743
Stage-specific expression of an odorant receptor underlies olfactory behavioral plasticity in Spodoptera littoralis larvae. PMID:34706739
First evidence of human-to-dog transmission of SARS-CoV-2 B.1.160 variant in France. PMID:34706153
Our unknown neighbor: A new species of rain frog of the genus Pristimantis (Amphibia: Anura: Strabomantidae) from the city of Loja, southern Ecuador. PMID:34705824
RNA virome diversity and Wolbachia infection in individual Drosophila simulans flies. PMID:34704919
Establishment of a Publicly Available Core Genome Multilocus Sequence Typing Scheme for Clostridium perfringens. PMID:34704797
Influence of Simplified Microbial Community Biofilms on Bacterial Retention in Porous Media under Conditions of Stormwater Biofiltration. PMID:34704792
Cross-reactivity and inclusivity analysis of CRISPR-based diagnostic assays of coronavirus SARS-CoV-2. PMID:34703657
In action-an early warning system for the detection of unexpected or novel pathogens. PMID:34703624
Morphology and molecular study of three new Cordycipitoid fungi and its related species collected from Jilin Province, northeast China. PMID:34703360
Vanmaneniamarmorata, a new species of loach (Teleostei: Gastromyzontidae) from the middle Chang-Jiang Basin in Guizhou Province, south China. PMID:34703356
Vertebrate host phylogeny influences gut archaeal diversity. PMID:34702978
The widespread presence of a family of fish virulence plasmids in Vibrio vulnificus stresses its relevance as a zoonotic pathogen linked to fish farms. PMID:34702148
Speciation in the deep: genomics and morphology reveal a new species of beaked whale Mesoplodon eueu. PMID:34702078
The GH19 Engineering Database: Sequence diversity, substrate scope, and evolution in glycoside hydrolase family 19. PMID:34699529
Luteirhabdus pelagi gen. nov., sp. nov., a novel member of the family Flavobacteriaceae, isolated from the West Pacific Ocean. PMID:34698880
Origin and significance of two pairs of head tentacles in the radiation of euthyneuran sea slugs and land snails. PMID:34697382
Evolutionary history and pan-genome dynamics of strawberry (Fragaria spp.). PMID:34697247
Near-Complete Genome of SARS-CoV-2 Delta (AY.3) Variant Identified in a Dog in Kansas, USA. PMID:34696534
Evolutionary Dynamics of H5 Highly Pathogenic Avian Influenza Viruses (Clade 2.3.4.4B) Circulating in Bulgaria in 2019-2021. PMID:34696516
Genomic Characterization of a Novel Alphacoronavirus Isolated from Bats, Korea, 2020. PMID:34696471
Feline Calicivirus Virulent Systemic Disease: Clinical Epidemiology, Analysis of Viral Isolates and In Vitro Efficacy of Novel Antivirals in Australian Outbreaks. PMID:34696470
Swinepox Virus Strains Isolated from Domestic Pigs and Wild Boar in Germany Display Altered Coding Capacity in the Terminal Genome Region Encoding for Species-Specific Genes. PMID:34696467
Turnover of SARS-CoV-2 Lineages Shaped the Pandemic and Enabled the Emergence of New Variants in the State of Rio de Janeiro, Brazil. PMID:34696443
A Deeper Insight into Evolutionary Patterns and Phylogenetic History of ASFV Epidemics in Sardinia (Italy) through Extensive Genomic Sequencing. PMID:34696424
Real-Time Genomic Surveillance during the 2021 Re-Emergence of the Yellow Fever Virus in Rio Grande do Sul State, Brazil. PMID:34696408
Newlavirus, a Novel, Highly Prevalent, and Highly Diverse Protoparvovirus of Foxes (Vulpes spp.). PMID:34696399
Novel Fusari- and Toti-like Viruses, with Probable Different Origins, in the Plant Pathogenic Oomycete Globisporangiumultimum. PMID:34696361
Characterization of the Mycovirome from the Plant-Pathogenic Fungus Cercospora beticola. PMID:34696345
Transmission dynamics and susceptibility patterns of SARS-CoV-2 in domestic, farmed and wild animals: Sustainable One Health surveillance for conservation and public health to prevent future epidemics and pandemics. PMID:34694705
The complete chloroplast genome sequence of the Tibetan herb Phlomoides rotata (Benth. ex Hook.f.) Mathiesen (Lamiaceae). PMID:34693018
Characterization of the complete chloroplast genome of Sparganium glomeratum (Typhaceae) from Jilin Province, China and phylogenetic analysis. PMID:34693014
The complete chloroplast genome sequence of Polyalthiopsis verrucipes (Annonaceae). PMID:34693008
Discovery and Evolution of a Divergent Coronavirus in the Plateau Pika From China That Extends the Host Range of Alphacoronaviruses. PMID:34691006
First detection of Colletotrichumfructicola (Ascomycota) on horsehair worms (Nematomorpha). PMID:34690520
Dead-End Hybridization in Walnut Trees Revealed by Large-Scale Genomic Sequence Data. PMID:34687315
Metagenomic detection and characterisation of multiple viruses in apparently healthy Australian Neophema birds. PMID:34686748
Triterpenoid and Steroidal Saponins Differentially Influence Soil Bacterial Genera. PMID:34685998
Plastome Characterization and Phylogenomic Analysis Yield New Insights into the Evolutionary Relationships among the Species of the Subgenus Bryocles (Hosta; Asparagaceae) in East Asia. PMID:34685791
Sperm Cyst "Looping": A Developmental Novelty Enabling Extreme Male Ornament Evolution. PMID:34685746
Cryptic Diversity of Isaria-like Species in Guizhou, China. PMID:34685462
One New Species and Two New Host Records of Apiospora from Bamboo and Maize in Northern Thailand with Thirteen New Combinations. PMID:34685442
Human Polyomaviruses (HPyV) in Wastewater and Environmental Samples from the Lisbon Metropolitan Area: Detection and Genetic Characterization of Viral Structural Protein-Coding Sequences. PMID:34684259
Surveillance along the Rio Grande during the 2020 Vesicular Stomatitis Outbreak Reveals Spatio-Temporal Dynamics of and Viral RNA Detection in Black Flies. PMID:34684213
Novel Phage-Derived Depolymerase with Activity against Proteus mirabilis Biofilms. PMID:34683494
Genome Evolution of Filamentous Cyanobacterium Nostoc Species: From Facultative Symbiosis to Free Living. PMID:34683336
Morphological and Phylogenetic Appraisal of Novel and Extant Taxa of Stictidaceae from Northern Thailand. PMID:34682300
Phytophthora heterospora sp. nov., a New Pseudoconidia-Producing Sister Species of P. palmivora. PMID:34682290
Genome Comparisons of the Fission Yeasts Reveal Ancient Collinear Loci Maintained by Natural Selection. PMID:34682285
Four New Species of Hemileccinum (Xerocomoideae, Boletaceae) from Southwestern China. PMID:34682244
Ganoderma (Ganodermataceae, Basidiomycota) Species from the Greater Mekong Subregion. PMID:34682240
Multi-Gene Phylogeny and Taxonomy of Hydnellum (Bankeraceae, Basidiomycota) from China. PMID:34682238
A Lignocellulolytic Colletotrichum sp. OH with Broad-Spectrum Tolerance to Lignocellulosic Pretreatment Compounds and Derivatives and the Efficiency to Produce Hydrogen Peroxide and 5-Hydroxymethylfurfural Tolerant Cellulases. PMID:34682207
Colonized Niche, Evolution and Function Signatures of Bifidobacterium pseudolongum within Bifidobacterial Genus. PMID:34681333
Prokaryotic and Eukaryotic Horizontal Transfer of Sailor (DD82E), a New Superfamily of IS630-Tc1-Mariner DNA Transposons. PMID:34681104
De Novo Genome Assembly of Chinese Plateau Honeybee Unravels Intraspecies Genetic Diversity in the Eastern Honeybee, Apis cerana. PMID:34680661
Tackling the Taxonomic Challenges in the Family Scoliidae (Insecta, Hymenoptera) Using an Integrative Approach: A Case Study from Southern China. PMID:34680660
Microbiome Associated with the Mycangia of Female and Male Adults of the Ambrosia Beetle Platypus cylindrus Fab. (Coleoptera: Curculionidae). PMID:34680650
Isolation in Natural Host Cell Lines of Wolbachia Strains wPip from the Mosquito Culex pipiens and wPap from the Sand Fly Phlebotomus papatasi. PMID:34680640
Emergence of Parafilaria bovicola in Austria. PMID:34679985
Analysis of rDNA reveals a high genetic diversity of Halophila major in the Wallacea region. PMID:34679102
Two new species of Myxobolus Bütschli, 1882 (Cnidaria: Bivalvulida: Myxobolidae) infecting the gill of the black redhorse, Moxostoma duquesnei (Lesueur) (Cypriniformes: Catostomidae) in the Little Tennessee River Basin, North Carolina. PMID:34677735
Chromosome-Level Genome Assembly of Nephotettix cincticeps (Uhler, 1896) (Hemiptera: Cicadellidae: Deltocephalinae). PMID:34677607
A versatile genetic toolbox for Prevotella copri enables studying polysaccharide utilization systems. PMID:34676563
The complete chloroplast genome of Dendrobium comatum (Orchidaceae). PMID:34676297
Characterization of the complete chloroplast genome sequence of Chinese endemic species of Aster batangensis (Asteraceae: Astereae) and its phylogenetic implications. PMID:34676295
Complete mitochondrial genome of the longhorn date palm stem borer Jebusaea hammerschmidtii (Reiche, 1878). PMID:34676292
The complete chloroplast genome of Tripsacum laxum (Gramineae). PMID:34676291
Embryonic LTR retrotransposons supply promoter modules to somatic tissues. PMID:34675070
Whole genome based insights into the phylogeny and evolution of the Juglandaceae. PMID:34674641
Experimental Design for Time-Series RNA-Seq Analysis of Gene Expression and Alternative Splicing. PMID:34674176
The Streptochaeta Genome and the Evolution of the Grasses. PMID:34671369
The origins and spread of domestic horses from the Western Eurasian steppes. PMID:34671162
Calophyllaceae plastomes, their structure and insights in relationships within the clusioids. PMID:34671062
Pathogenic tau accelerates aging-associated activation of transposable elements in the mouse central nervous system. PMID:34670118
Isolation and Characterization of Lignocellulose-Degrading Geobacillus thermoleovorans from Yellowstone National Park. PMID:34669438
Overabundance of Asaia and Serratia Bacteria Is Associated with Deltamethrin Insecticide Susceptibility in Anopheles coluzzii from Agboville, Côte d'Ivoire. PMID:34668745
Convergent Loss of Chemoreceptors across Independent Origins of Slave-Making in Ants. PMID:34668533
Sequence features of retrotransposons allow for epigenetic variability. PMID:34668484
A Previously Undescribed Highly Prevalent Phage Identified in a Danish Enteric Virome Catalog. PMID:34665009
High-quality genome assembly of an important biodiesel plant, Euphorbia lathyris L. PMID:34664644
Identification and analyses of the chemical composition of a naturally occurring albino mutant chanterelle. PMID:34663853
Duplication of spiralian-specific TALE genes and evolution of the blastomere specification mechanism in the bivalve lineage. PMID:34663437
Origin and adaptive evolution of UV RESISTANCE LOCUS 8-mediated signaling during plant terrestrialization. PMID:34662425
ORTHOSCOPE*: A Phylogenetic Pipeline to Infer Gene Histories from Genome-Wide Data. PMID:34662403
Bacterial Community Members Increase Bacillus subtilis Maintenance on the Roots of Arabidopsis thaliana. PMID:34661038
The complete chloroplast genome and phylogenetic analysis of Paris stigmatosa (Melanthiaceae). PMID:34660904
The complete chloroplast genome sequence of Japanese buttercup Ranunculus japonicus Thunb. PMID:34660897
Characteristics of the complete chloroplast genome sequences of Stylidium debile and Stylidium petiolare (Stylidiaceae). PMID:34660891
Downregulation of Barley Regulator of Telomere Elongation Helicase 1 Alters the Distribution of Meiotic Crossovers. PMID:34659314
High-Quality Genome of the Medicinal Plant Strobilanthes cusia Provides Insights Into the Biosynthesis of Indole Alkaloids. PMID:34659312
Genome-Wide Analysis of the Phospholipase D Family in Five Cotton Species, and Potential Role of GhPLD2 in Fiber Development and Anther Dehiscence. PMID:34659294
Uncovering Symbionts Across the Psyllid Tree of Life and the Discovery of a New Liberibacter Species, "Candidatus" Liberibacter capsica. PMID:34659173
Geography-Driven Evolution of Potato Virus A Revealed by Genetic Diversity Analysis of the Complete Genome. PMID:34659170
Prospecting Endophytic Bacteria Endowed With Plant Growth Promoting Potential Isolated From Camellia sinensis. PMID:34659169
Lulworthinone, a New Dimeric Naphthopyrone From a Marine Fungus in the Family Lulworthiaceae With Antibacterial Activity Against Clinical Methicillin-Resistant Staphylococcus aureus Isolates. PMID:34659158
Pan-Genome of the Genus Streptomyces and Prioritization of Biosynthetic Gene Clusters With Potential to Produce Antibiotic Compounds. PMID:34659136
Evolution and phylogeny of the deep-sea isopod families Desmosomatidae Sars, 1897 and Nannoniscidae Hansen, 1916 (Isopoda: Asellota). PMID:34658667
Class-II dihydroorotate dehydrogenases from three phylogenetically distant fungi support anaerobic pyrimidine biosynthesis. PMID:34656184
An Antigenically Diverse, Representative Panel of Envelope Glycoproteins for Hepatitis C Virus Vaccine Development. PMID:34655573
Genome sequencing of turmeric provides evolutionary insights into its medicinal properties. PMID:34654884
Three chromosome-scale Papaver genomes reveal punctuated patchwork evolution of the morphinan and noscapine biosynthesis pathway. PMID:34654815
Comparative analysis of full-length mitochondrial genomes of five Skeletonema species reveals conserved genome organization and recent speciation. PMID:34654361
The fungus Kalmusia longispora is able to cause vascular necrosis on Vitis vinifera. PMID:34653213
Characterization of the complete chloroplast genome of Avena chinensis (Poales: Poaceae). PMID:34651080
The complete chloroplast genome sequence of Elaeocarpus decipiens (Elaeocarpaceae). PMID:34651078
Pneumonia Patients Caused by Co-infection With SARS-CoV-2 and Human Adenovirus in China. PMID:34650998
The Hidden Genomic Diversity, Specialized Metabolite Capacity, and Revised Taxonomy of Burkholderia Sensu Lato. PMID:34650530
Rapid incidence estimation from SARS-CoV-2 genomes reveals decreased case detection in Europe during summer 2020. PMID:34650062
Hookworm infection in central China: morphological and molecular diagnosis. PMID:34649597
The genomic ecosystem of transposable elements in maize. PMID:34648488
Introduction of SARS-CoV-2 C.37 (WHO VOI lambda) in the Sao Paulo State, Southeast Brazil. PMID:34647634
Evolutionary patterns of nucleotide substitution rates in plastid genomes of Quercus. PMID:34646478
Unraveling the plant diversity of the Amazonian canga through DNA barcoding. PMID:34646474
Comprehensive Genomic Analysis of the Endophytic Bacillus altitudinis Strain GLB197, a Potential Biocontrol Agent of Grape Downy Mildew. PMID:34646305
Organelle Genome Variation in the Red Algal Genus Ahnfeltia (Florideophyceae). PMID:34646303
Identification and Molecular Characterization of a Novel Hordeivirus Associated With Yellow Mosaic Disease of Privet (Ligustrum vulgare) in Europe. PMID:34646247
L-Canavanine, a Root Exudate From Hairy Vetch (Vicia villosa) Drastically Affecting the Soil Microbial Community and Metabolite Pathways. PMID:34646244
Case Report: A Novel GNB1 Mutation Causes Global Developmental Delay With Intellectual Disability and Behavioral Disorders. PMID:34646230
IMA Genome - F15 : Draft genome assembly of Fusarium pilosicola, Meredithiella fracta, Niebla homalea, Pyrenophora teres hybrid WAC10721, and Teratosphaeria viscida. PMID:34645521
Four new species of Russula subsection Roseinae from tropical montane forests in western Panama. PMID:34644307
Genomic surveillance of SARS-CoV-2 tracks early interstate transmission of P.1 lineage and diversification within P.2 clade in Brazil. PMID:34644287
The population frequency of human mitochondrial DNA variants is highly dependent upon mutational bias. PMID:34643212
Ancient DNA of the pygmy marmoset type specimen Cebuella pygmaea (Spix, 1823) resolves a taxonomic conundrum. PMID:34643070
Intra-host evolution during SARS-CoV-2 prolonged infection. PMID:34642605
Decomposing the sources of SARS-CoV-2 fitness variation in the United States. PMID:34642604
A new Hendra virus genotype found in Australian flying foxes. PMID:34641882
Lineage-Specific Variation in IR Boundary Shift Events, Inversions, and Substitution Rates among Caprifoliaceae s.l. (Dipsacales) Plastomes. PMID:34638831
Pseudomonas Phage MD8: Genetic Mosaicism and Challenges of Taxonomic Classification of Lambdoid Bacteriophages. PMID:34638693
Mitochondrial Genomes, Phylogenetic Associations, and SNP Recovery for the Key Invasive Ponto-Caspian Amphipods in Europe. PMID:34638649
Transcriptomics Reveals the Putative Mycoparasitic Strategy of the Mushroom Entoloma abortivum on Species of the Mushroom Genus Armillaria. PMID:34636668
A vector system for fast-forward studies of the HOPZ-ACTIVATED RESISTANCE1 (ZAR1) resistosome in the model plant Nicotiana benthamiana. PMID:34633454
Organic farming practices change the soil bacteria community, improving soil quality and maize crop yields. PMID:34631309
High-Throughput Genomic Data Reveal Complex Phylogenetic Relationships in Stylosanthes Sw (Leguminosae). PMID:34630521
Comparative Chloroplast Genomics and Phylogenetic Analysis of Zygophyllum (Zygophyllaceae) of China. PMID:34630471
A deep learning ensemble approach to prioritize antiviral drugs against novel coronavirus SARS-CoV-2 for COVID-19 drug repurposing. PMID:34630000
Complex structural variations in non-human primate hepatitis B virus. PMID:34627299
Metagenomic sequencing determines complete infectious bronchitis virus (avian Gammacoronavirus) vaccine strain genomes and associated viromes in chicken clinical samples. PMID:34626348
Clustering of Sex-Biased Genes and Transposable Elements in the Genome of the Medaka Fish Oryzias latipes. PMID:34623422
Chromosomal-Level Genome Assembly of a True Bug, Aspongopus chinensis Dallas, 1851 (Hemiptera: Dinidoridae). PMID:34623414
The complete chloroplast genome sequence of Prunus glandulosa Thunb. (Rosaceae). PMID:34621990
The complete chloroplast genome of Clerodendrum lindleyi Decne. ex Planch. (Tubiflorae: Verbenaceae) from nanjing, China. PMID:34621986
Characterization of the complete chloroplast genome sequence of Rubus rufus Focke (Rosaceae). PMID:34621984
Persistent HIV-1 transcription in CD4+ T cells from ART-suppressed individuals can originate from biologically competent proviruses. PMID:34621530
The genome of Shorea leprosula (Dipterocarpaceae) highlights the ecological relevance of drought in aseasonal tropical rainforests. PMID:34620991
MADS-box transcription factors MADS11 and DAL1 interact to mediate the vegetative-to-reproductive transition in pine. PMID:34618133
Two plastid POLLUX ion channel-like proteins are required for stress-triggered stromal Ca2+release. PMID:34618095
Phylogeny of drepanosiphine aphids sensu lato (Hemiptera, Aphidoidea) inferred from molecular and morphological data. PMID:34616948
Novel ACE2 protein interactions relevant to COVID-19 predicted by evolutionary rate correlations. PMID:34616619
Evidence from the resurrected family Polyrhabdinidae Kamm, 1922 (Apicomplexa: Gregarinomorpha) supports the epimerite, an attachment organelle, as a major eugregarine innovation. PMID:34616591
Chromosome-Scale Genome Assembly and Transcriptome Assembly of Kawakawa Euthynnus affinis; A Tuna-Like Species. PMID:34616435
Three new species of Rhytidhysteron (Dothideomycetes, Ascomycota) from Mexico. PMID:34616220
Integrated omics networks reveal the temporal signaling events of brassinosteroid response in Arabidopsis. PMID:34615886
Efficacy of ChAdOx1 nCoV-19 (AZD1222) vaccine against SARS-CoV-2 lineages circulating in Brazil. PMID:34615860
Map-based cloning and promoter variation analysis of the lobed leaf gene BoLMI1a in ornamental kale (Brassica oleracea L. var. acephala). PMID:34615469
Foxq2 determines blue cone identity in zebrafish. PMID:34613771
Genome-Wide Association Study Reveals Genetic Markers for Antimicrobial Resistance in Mycoplasma bovis. PMID:34612702
Rapid and High-Throughput Reverse Transcriptase Quantitative PCR (RT-qPCR) Assay for Identification and Differentiation between SARS-CoV-2 Variants B.1.1.7 and B.1.351. PMID:34612692
Culturable Fungi from Urban Soils in China I: Description of 10 New Taxa. PMID:34612666
Complementation of contact tracing by mass testing for successful containment of beta COVID-19 variant (SARS-CoV-2 VOC B.1.351) epidemic in Hong Kong. PMID:34611629
Genomic characterization and phylogenetic analysis of the first SARS-CoV-2 variants introduced in Lebanon. PMID:34611501
Catalytic promiscuity of rice 2-oxoglutarate/Fe(II)-dependent dioxygenases supports xenobiotic metabolism. PMID:34608958
Natural diversity provides a broad spectrum of cyanobacteriochrome-based diguanylate cyclases. PMID:34608946
Persistence of G10P[11] neonatal rotavirus infections in southern India. PMID:34607240
Identification and classification of antiviral defence systems in bacteria and archaea with PADLOC reveals new system types. PMID:34606606
Mutation in the Plasmodium falciparum BTB/POZ Domain of K13 Protein Confers Artemisinin Resistance. PMID:34606334
Comparative analysis of integrative and conjugative mobile genetic elements in the genus Mesorhizobium. PMID:34605762
Characterization of the complete chloroplast genome of Lonicera similis (Caprifoliaceae). PMID:34604530
Biogeography rather than substrate type determines bacterial colonization dynamics of marine plastics. PMID:34603853
Heterogeneous Genetic Diversity Estimation of a Promising Domestication Medicinal Motherwort Leonurus Cardiaca Based on Chloroplast Genome Resources. PMID:34603384
Insight Into Whole Genome of Aeromonas veronii Isolated From Freshwater Fish by Resistome Analysis Reveal Extensively Antibiotic Resistant Traits. PMID:34603262
Phylogenetic and morphological analyses of Coniochaeta isolates recovered from Inner Mongolia and Yunnan revealed three new endolichenic fungal species. PMID:34602840
Prediction of RNA secondary structure including pseudoknots for long sequences. PMID:34601552
A chromosome-level genome assembly for the eastern fence lizard (Sceloporus undulatus), a reptile model for physiological and evolutionary ecology. PMID:34599334
Evolutionary Genomics of Sex-Related Chromosomes at the Base of the Green Lineage. PMID:34599324
Using fecal immunochemical tubes for the analysis of the gut microbiome has the potential to improve colorectal cancer screening. PMID:34599256
Emergence and spread of SARS-CoV-2 lineage B.1.620 with variant of concern-like mutations and deletions. PMID:34599175
Human commensal gut Proteobacteria withstand type VI secretion attacks through immunity protein-independent mechanisms. PMID:34599171
Temporal spread and evolution of SARS-CoV-2 in the second pandemic wave in Brazil. PMID:34596904
Elevated Temperature May Affect Nectar Microbes, Nectar Sugars, and Bumble Bee Foraging Preference. PMID:34596711
Characterization of the complete chloroplast genome of Salix chienii W.C. Cheng (Salicaceae) from Southern China. PMID:34595346
The complete chloroplast of Chrysanthemum × morifolium 'Fubaiju'. PMID:34595337
The First Case of COVID-19 by an A.27 Lineage Variant Detected in a Returning Employee - Sichuan Province, China, January 7, 2021. PMID:34594977
A Novel Coronavirus Genome Identified in a Cluster of Pneumonia Cases - Wuhan, China 2019-2020. PMID:34594763
Mitochondrial genomes of five Hyphessobrycon tetras and their phylogenetic implications. PMID:34594536
Molecular Acquisition, Cleaning and Evaluation in R (MACER) - A tool to assemble molecular marker datasets from BOLD and GenBank. PMID:34594153
Two new species of Dugesia (Platyhelminthes, Tricladida, Dugesiidae) from the tropical monsoon forest in southern China. PMID:34594150
Parallel subgenome structure and divergent expression evolution of allo-tetraploid common carp and goldfish. PMID:34594040
Biodiversity and biocatalyst activity of culturable hydrocarbonoclastic fungi isolated from Marac-Moruga mud volcano in South Trinidad. PMID:34593929
Transmission event of SARS-CoV-2 delta variant reveals multiple vaccine breakthrough infections. PMID:34593004
The genome of the zoonotic malaria parasite Plasmodium simium reveals adaptations to host switching. PMID:34592986
Chloroplast genomes of five Oedogonium species: genome structure, phylogenetic analysis and adaptive evolution. PMID:34592920
The widespread IS200/IS605 transposon family encodes diverse programmable RNA-guided endonucleases. PMID:34591643
Members of the ELMOD protein family specify formation of distinct aperture domains on the Arabidopsis pollen surface. PMID:34591014
Complete mitochondrial genome and phylogeny of the causal agent of Bayoud disease on date palm, Fusarium oxysporum f. sp. albedinis. PMID:34589591
The complete chloroplast genome of Prinsepia uniflora (Rosaceae), a medicinal plant found in northwest China. PMID:34589590
Analysis of Cucurbita ficifolia (Cucurbitaceae) chloroplast genome and its phylogenetic implications. PMID:34589584
Tackling the phylogenetic conundrum of Hydroidolina (Cnidaria: Medusozoa: Hydrozoa) by assessing competing tree topologies with targeted high-throughput sequencing. PMID:34589302
The importance of molecular characters when morphological variability hinders diagnosability: systematics of the moon jellyfish genus Aurelia (Cnidaria: Scyphozoa). PMID:34589293
Genome-Wide Characterization of the MLO Gene Family in Cannabis sativa Reveals Two Genes as Strong Candidates for Powdery Mildew Susceptibility. PMID:34589104
Global Expansion of Linezolid-Resistant Coagulase-Negative Staphylococci. PMID:34589061
Characterization of gut microbiome and metabolome in Helicobacter pylori patients in an underprivileged community in the United States. PMID:34588753
Mechanism for Cas4-assisted directional spacer acquisition in CRISPR-Cas. PMID:34588691
Virome of Bat-Infesting Arthropods: Highly Divergent Viruses in Different Vectors. PMID:34586860
Diversity of Treponema denticola and Other Oral Treponeme Lineages in Subjects with Periodontitis and Gingivitis. PMID:34585987
H5Nx Viruses Emerged during the Suppression of H5N1 Virus Populations in Poultry. PMID:34585974
Evolution of Type IV CRISPR-Cas Systems: Insights from CRISPR Loci in Integrative Conjugative Elements of Acidithiobacillia. PMID:34582696
Description of a New Species and Lectotypification of Two Names in Impatiens Sect. Racemosae (Balsaminaceae) from China. PMID:34579345
Analyzing Type 2 Diabetes Associations with the Gut Microbiome in Individuals from Two Ethnic Backgrounds Living in the Same Geographic Area. PMID:34579166
Whole Genome Analysis of Human Rotaviruses Reveals Single Gene Reassortant Rotavirus Strains in Zambia. PMID:34578453
Evolutionary Signatures Governing the Codon Usage Bias in Coronaviruses and Their Implications for Viruses Infecting Various Bat Species. PMID:34578428
Phylogenomic Characterization of Lopma Virus and Praja Virus, Two Novel Rodent-Borne Arteriviruses. PMID:34578423
Genetic Subtypes and Natural Resistance Mutations in HCV Genotype 4 Infected Saudi Arabian Patients. PMID:34578414
Emergence and Spread of a B.1.1.28-Derived P.6 Lineage with Q675H and Q677H Spike Mutations in Uruguay. PMID:34578382
Report of One-Year Prospective Surveillance of SARS-CoV-2 in Dogs and Cats in France with Various Exposure Risks: Confirmation of a Low Prevalence of Shedding, Detection and Complete Sequencing of an Alpha Variant in a Cat. PMID:34578341
Prevalence and Molecular Characterization of Human Bocavirus Detected in Croatian Children with Respiratory Infection. PMID:34578309
Genomic Characterisation of a Highly Divergent Siadenovirus (Psittacine Siadenovirus F) from the Critically Endangered Orange-Bellied Parrot (Neophema chrysogaster). PMID:34578295
Identification and Full Characterisation of Two Novel Crustacean Infecting Members of the Family Nudiviridae Provides Support for Two Subfamilies. PMID:34578276
Parasites Circulating in Wild Synanthropic Capybaras (Hydrochoerus hydrochaeris): A One Health Approach. PMID:34578184
Clinico-Genomic Analysis Reveals Mutations Associated with COVID-19 Disease Severity: Possible Modulation by RNA Structure. PMID:34578142
Stagonosporopsis pogostemonis: A Novel Ascomycete Fungus Causing Leaf Spot and Stem Blight on Pogostemon cablin (Lamiaceae) in South China. PMID:34578126
From Strain Characterization to Field Authorization: Highlights on Bacillus velezensis Strain B25 Beneficial Properties for Plants and Its Activities on Phytopathogenic Fungi. PMID:34576819
OXA-900, a Novel OXA Sub-Family Carbapenemase Identified in Citrobacter freundii, Evades Detection by Commercial Molecular Diagnostics Tests. PMID:34576793
The Rhizobial Microbiome from the Tropical Savannah Zones in Northern Côte d'Ivoire. PMID:34576737
Diverse Bacteriophages Infecting the Bacterial Striped Catfish Pathogen Edwardsiella ictaluri. PMID:34576725
Tailed Lytic Bacteriophages of Soft Rot Pectobacteriaceae. PMID:34576713
Searching for Biological Function of the Mysterious PA2504 Protein from Pseudomonas aeruginosa. PMID:34575996
Impact of Genomic and Transcriptomic Resources on Apiaceae Crop Breeding Strategies. PMID:34575872
Neopestalotiopsis Species Associated with Flower Diseases of Macadamia integrifolia in Australia. PMID:34575809
The Genus Leccinum (Boletaceae, Boletales) from China Based on Morphological and Molecular Data. PMID:34575769
Internally Symmetrical Stwintrons and Related Canonical Introns in Hypoxylaceae Species. PMID:34575748
Herpesvirus Infection in a Breeding Population of Two Coexisting Strix Owls. PMID:34573485
De novo Assembly, Annotation, and Analysis of Transcriptome Data of the Ladakh Ground Skink Provide Genetic Information on High-Altitude Adaptation. PMID:34573405
Complete Chloroplast Genomes of Fagus sylvatica L. Reveal Sequence Conservation in the Inverted Repeat and the Presence of Allelic Variation in NUPTs. PMID:34573338
Comparative Mitogenomics and Phylogenetic Analyses of Pentatomoidea (Hemiptera: Heteroptera). PMID:34573288
Development of a Quantitative PCR Assay for Four Salmon Species Inhabiting the Yangyangnamdae River Using Environmental DNA. PMID:34571776
Fundamental evolution of all Orthocoronavirinae including three deadly lineages descendent from Chiroptera-hosted coronaviruses: SARS-CoV, MERS-CoV and SARS-CoV-2. PMID:34570933
High-quality genome assembly of the soybean fungal pathogen Cercospora kikuchii. PMID:34568928
Diversity in olfactory receptor repertoires is associated with dietary specialization in a genus of frugivorous bat. PMID:34568918
The complete chloroplast genome of the ephemeral plant Isatis minima (brassicaceae) of northwest China. PMID:34568569
The complete mitochondrial genome of Cochylidia moguntiana (Rössler, 1864) (Lepidoptera: Tortricidae). PMID:34568561
The complete mitochondrial genome of the non-biting midge Chironomus yoshimatsui (Diptera: Chironomidae). PMID:34568559
First complete chloroplast genome of the rare medicinal plant Schnabelia tetrodonta. PMID:34568558
Characterization of the first chloroplast genome of Dichroa febrifuga and its phylogenetic analysis. PMID:34568557
The complete mitochondrial genome of Trichonephila clavipes (Araneae: Araneidae). PMID:34568555
Occurrence of Colibacillosis in Broilers and Its Relationship With Avian Pathogenic Escherichia coli (APEC) Population Structure and Molecular Characteristics. PMID:34568479
Structural and Evolutionary Analyses of PR-4 SUGARWINs Points to a Different Pattern of Protein Function. PMID:34567046
Genomic Resources to Guide Improvement of the Shea Tree. PMID:34567033
Characterization of Shiga Toxin 2a Encoding Bacteriophages Isolated From High-Virulent O145:H25 Shiga Toxin-Producing Escherichia coli. PMID:34566932
Blood Meals With Active and Heat-Inactivated Serum Modifies the Gene Expression and Microbiome of Aedes albopictus. PMID:34566927
Maturation of Rhodobacter capsulatus Multicopper Oxidase CutO Depends on the CopA Copper Efflux Pathway and Requires the cutF Product. PMID:34566924
Description, Taxonomy, and Comparative Genomics of a Novel species, Thermoleptolyngbya sichuanensis sp. nov., Isolated From Hot Springs of Ganzi, Sichuan, China. PMID:34566907
Proposal to recognise the tribes Adinobotryeae and Glycyrrhizeae (Leguminosae subfamily Papilionoideae) based on chloroplast phylogenomic evidence. PMID:34566448
Odorant-binding proteins in canine anal sac glands indicate an evolutionarily conserved role in mammalian chemical communication. PMID:34565329
A Combined Transcriptomics and Proteomics Approach Reveals the Differences in the Predatory and Defensive Venoms of the Molluscivorous Cone Snail Cylinder ammiralis (Caenogastropoda: Conidae). PMID:34564647
Species Diversity and Phylogenetic Relationships of Olive Lace Bugs (Hemiptera: Tingidae) Found in South Africa. PMID:34564270
Identification of Core Genes of Toll-like Receptor Pathway from Lymantria dispar and Induced Expression upon Immune Stimulant. PMID:34564267
Comparative Mitogenomic Analysis of Two Longhorn Beetles (Coleoptera: Cerambycidae: Lamiinae) with Preliminary Investigation into Phylogenetic Relationships of Tribes of Lamiinae. PMID:34564260
Ophelimus bipolaris sp. n. (Hymenoptera, Eulophidae), a New Invasive Eucalyptus Pest and Its Host Plants in China. PMID:34564218
Vitamin D signaling inhibits HBV activity by directly targeting the HBV core promoter. PMID:34562448
Cohnella cholangitidis sp. nov., a novel species of the genus Cohnella isolated from a clinical specimen in Korea. PMID:34562146
Captivity and the co-diversification of great ape microbiomes. PMID:34561432
Does immune recognition of SARS-CoV2 epitopes vary between different ethnic groups? PMID:34560183
Different evolutionary trends form the twilight zone of the bacterial pan-genome. PMID:34559043
Genome and transcriptome analysis of the beet armyworm Spodoptera exigua reveals targets for pest control. PMID:34557910
Discovery and characterization of UipA, a uranium- and iron-binding PepSY protein involved in uranium tolerance by soil bacteria. PMID:34556817
PmiREN2.0: from data annotation to functional exploration of plant microRNAs. PMID:34554254
Complete Mitochondrial Genome Sequence of the Gulf Coast Tick (Amblyomma maculatum). PMID:34553990
Comprehensive genomic analysis of Bacillus velezensis AL7 reveals its biocontrol potential against Verticillium wilt of cotton. PMID:34553246
The complete chloroplast genome sequence of Quercus franchetii Skan (Fagaceae). PMID:34553065
Three mitochondrial genomes of early-winged insects (Ephemeroptera: Baetidae and Leptophlebiidae). PMID:34553062
The complete chloroplast genome sequence of Photinia × fraseri, a medicinal plant and phylogenetic analysis. PMID:34553057
The complete chloroplast genome of Beesia deltophylla (Ranunculaceae). PMID:34553056
Characterization of the complete chloroplast genome sequence of Diospyros kaki cv. Luotiantianshi. PMID:34553054
Long-Term Intrahost Evolution of Staphylococcus aureus Among Diabetic Patients With Foot Infections. PMID:34552578
Emerging SARS-CoV-2 variants follow a historical pattern recorded in outgroups infecting non-human hosts. PMID:34552191
Activation of EGFR signaling by Tc-Vein and Tc-Spitz regulates the metamorphic transition in the red flour beetle Tribolium castaneum. PMID:34552169
Structure of a Ty1 restriction factor reveals the molecular basis of transposition copy number control. PMID:34552077
Phylogenetic analysis and development of molecular markers for five medicinal Alpinia species based on complete plastome sequences. PMID:34551721
Genomic and Phenotypic Analysis of Heat and Sanitizer Resistance in Escherichia coli from Beef in Relation to the Locus of Heat Resistance. PMID:34550750
Segregational Drift Constrains the Evolutionary Rate of Prokaryotic Plasmids. PMID:34550379
Deciphering Succession and Assembly Patterns of Microbial Communities in a Two-Stage Solid-State Fermentation System. PMID:34549993
Role of Dicer-Dependent RNA Interference in Regulating Mycoparasitic Interactions. PMID:34549988
Genome sequencing and identification of cellulase genes in Bacillus paralicheniformis strains from the Red Sea. PMID:34548024
Identification and validation of an ECERIFERUM2- LIKE gene controlling cuticular wax biosynthesis in cabbage (Brassica oleracea L. var. capitata L.). PMID:34546379
Genomic Stability and Genetic Defense Systems in Dolosigranulum pigrum, a Candidate Beneficial Bacterium from the Human Microbiome. PMID:34546072
Variation in human herpesvirus 6B telomeric integration, excision, and transmission between tissues and individuals. PMID:34545807
SARS-CoV-2 Delta Variant among Asiatic Lions, India. PMID:34545805
Unique patterns of mating pheromone presence and absence could result in the ambiguous sexual behaviors of Colletotrichum species. PMID:34544120
Novel viruses belonging to the family Circoviridae identified in wild American wigeon samples. PMID:34542726
Frequent lineage-specific substitution rate changes support an episodic model for protein evolution. PMID:34542594
The complete chloroplast genome and characteristics analysis of Musa basjoo Siebold. PMID:34541615
Whole Genome Sequencing of SARS-CoV-2 Strains in COVID-19 Patients From Djibouti Shows Novel Mutations and Clades Replacing Over Time. PMID:34540874
Genomic comparison of non-photosynthetic plants from the family Balanophoraceae with their photosynthetic relatives. PMID:34540375
A taxonomic study of Nemania from China, with six new species. PMID:34539206
Complete chloroplast genome of the medicinal plant Evolvulus alsinoides: comparative analysis, identification of mutational hotspots and evolutionary dynamics with species of Solanales. PMID:34539121
A complete mitochondrial genome for fragrant Chinese rosewood (Dalbergia odorifera, Fabaceae) with comparative analyses of genome structure and intergenomic sequence transfers. PMID:34536995
Exploiting genomic surveillance to map the spatio-temporal dispersal of SARS-CoV-2 spike mutations in Belgium across 2020. PMID:34535691
Faster Rates of Molecular Sequence Evolution in Reproduction-Related Genes and in Species with Hypodermic Sperm Morphologies. PMID:34534329
The role of vicariance and dispersal on the temporal range dynamics of forest vipers in the Neotropical region. PMID:34534245
Development and evaluation of a custom bait design based on 469 single-copy protein-coding genes for exon capture of isopods (Philosciidae: Haloniscus). PMID:34534224
The complete chloroplast genome sequence of the endemic and rare orchid Nothodoritis zhejiangensis (Orchidaceae) in China. PMID:34532589
The complete chloroplast genome sequence of Phalaenopsis wilsonii Rolfe, a vulnerable wild moth orchid species (Orchidaceae). PMID:34532582
Characterization of the first chloroplast genome of Euchresta tubulosa Dunn and its phylogenetic analysis. PMID:34532578
Complete chloroplast genome of a rare and endangered plant species Phalaenopsis zhejiangensis: genomic features and phylogenetic relationship within Orchidaceae. PMID:34532575
The complete mitochondrial genome of the snowy-browed flycatcher Ficedula hyperythra (Passeriformes, Muscicapidae). PMID:34532574
The spatial-temporal dynamics of respiratory syncytial virus infections across the east-west coasts of Australia during 2016-17. PMID:34532066
Exploration of the Ixodes ricinus virosphere unveils an extensive virus diversity including novel coltiviruses and other reoviruses. PMID:34532065
RV144 vaccine imprinting constrained HIV-1 evolution following breakthrough infection. PMID:34532060
Geographic Variation of Phyllodiaptomus tunguidus Mitogenomes: Genetic Differentiation and Phylogeny. PMID:34531896
Identification and Characterization of a Novel Aminoglycoside 3''-Nucleotidyltransferase, ANT(3'')-IId, From Acinetobacter lwoffii. PMID:34531844
Uncovering Diagnostic Value of Mitogenome for Identification of Cryptic Species Fusarium graminearum Sensu Stricto. PMID:34531839
T1TAdb: the database of type I toxin-antitoxin systems. PMID:34531327
A single dose of the Biontech/Pfizer BNT162b2 vaccine protected elderly residents from severe COVID-19 during a SARS-coronavirus-2 outbreak in a senior citizen home in Germany. PMID:34528766
A population-level invasion by transposable elements triggers genome expansion in a fungal pathogen. PMID:34528512
Assessing the impact of COVID-19 border restrictions on dengue transmission in Yunnan Province, China: an observational epidemiological and phylogenetic analysis. PMID:34528006
Plantago campestris (Plantaginaceae), a rare new species from southern Brazil, supported by phylogenomic and morphological evidence. PMID:34527433
Unique protein features of SARS-CoV-2 relative to other Sarbecoviruses. PMID:34527286
Adaptation of the endemic coronaviruses HCoV-OC43 and HCoV-229E to the human host. PMID:34527284
The search for molecular mimicry in proteins carried by extracellular vesicles secreted by cells infected with Plasmodium falciparum. PMID:34527168
Genomic Epidemiology and Strain Taxonomy of Corynebacterium diphtheriae. PMID:34524891
A nascent polypeptide sequence modulates DnaA translation elongation in response to nutrient availability. PMID:34524083
Virulence of Enterovirus A71 Fluctuates Depending on the Phylogenetic Clade Formed in the Epidemic Year and Epidemic Region. PMID:34523967
Temporal and palaeoclimatic context of the evolution of insular woodiness in the Canary Islands. PMID:34522372
Phylogeographic analysis delimits three evolutionary significant units of least chipmunks in North America and identifies unique genetic diversity within the imperiled Peñasco population. PMID:34522364
Microdiversity characterizes prevalent phylogenetic clades in the glacier-fed stream microbiome. PMID:34522009
Extensive genomic rearrangements mediated by repetitive sequences in plastomes of Medicago and its relatives. PMID:34521343
The Complex Transcriptional Landscape of Magnetosome Gene Clusters in Magnetospirillum gryphiswaldense. PMID:34519524
The substitution spectra of coronavirus genomes. PMID:34518866
The critical role of natural history museums in advancing eDNA for biodiversity studies: a case study with Amazonian fishes. PMID:34518574
High royal jelly production does not impact the gut microbiome of honey bees. PMID:34517918
A novel Penicillium sumatraense isolate reveals an arsenal of degrading enzymes exploitable in algal bio-refinery processes. PMID:34517884
Diversification of the Type VI Secretion System in Agrobacteria. PMID:34517758
Long Terminal Repeat Retrotransposon Afut4 Promotes Azole Resistance of Aspergillus fumigatus by Enhancing the Expression of sac1 Gene. PMID:34516252
Comparative Genomics Sheds Light on the Convergent Evolution of Miniaturized Wasps. PMID:34515790
The complete chloroplast genome of the national tree of Peru, quina (Cinchona officinalis L., Rubiaceae). PMID:34514158
The complete mitochondrial genome of Populus rotundifolia var. duclouxiana. PMID:34514154
The complete chloroplast genome sequence of Clivia caulescens. PMID:34514153
Characterization and phylogenetic analysis of the complete plastome of Amaranthus retroflexus L. (Amaranthaceae), an annual weeds. PMID:34514150
First report of the complete mitogenome of Microchironomus tabarui Sasa, 1987 (Diptera, Chironomidae) from Hebei Province, China. PMID:34514149
Characterization of the complete chloroplast genome of the Taiwan alder Alnus formosana (Betulaceae) based on next-generation sequencing technology. PMID:34514147
The complete chloroplast genome characteristics of Polygala crotalarioides Buch.-Ham. ex DC. (Polygalaceae) from Yunnan, China. PMID:34514146
The complete mitochondrial genome of Sarcophaga tsinanensis (Diptera: Sarcophagidae). PMID:34514144
Characterization and phylogenetic analysis of the complete chloroplast genome of Ilex rotunda, traditional Chinese medicine plant. PMID:34514128
Co-Occurrence of Viruses, Plant Pathogens, and Symbionts in an Underexplored Hemipteran Clade. PMID:34513731
Molecular and morphological evidence for a new species of Leptopus (Phyllanthaceae) from Southeast Yunnan, China. PMID:34513329
The central role of Italy in the spatial spread of USUTU virus in Europe. PMID:34513027
Characterization and Dynamics of Intracellular Gene Transfer in Plastid Genomes of Viola (Violaceae) and Order Malpighiales. PMID:34512682
A new Antipathozoanthus species (Cnidaria, Hexacorallia, Zoantharia) from the northwest Pacific Ocean. PMID:34512088
A New Marine Species of Miracula (Oomycota) Parasitic to Minidiscus sp. in Iceland†. PMID:34512079
Four Unrecorded Aspergillus Species from the Rhizosphere Soil in South Korea. PMID:34512078
Taxonomic Revision of the Genus Lactifluus (Russulales, Basidiomycota) of South Korea. PMID:34512077
Transitional genomes and nutritional role reversals identified for dual symbionts of adelgids (Aphidoidea: Adelgidae). PMID:34508228
Molecular evolutionary characteristics of SARS-CoV-2 emerging in the United States. PMID:34506640
The chromosome-scale genome of Magnolia officinalis provides insight into the evolutionary position of magnoliids. PMID:34505009
Sequencing and characterization of an L-asparaginase gene from a new species of Penicillium section Citrina isolated from Cerrado. PMID:34504186
Dynamic prokaryotic communities in the dark western Mediterranean Sea. PMID:34504142
Evolutionary rewiring of the wheat transcriptional regulatory network by lineage-specific transposable elements. PMID:34503979
An Ancient Adenosine Receptor Gains Olfactory Function in Bony Vertebrates. PMID:34499158
An Evolutionary Perspective of the Lipocalin Protein Family. PMID:34497539
Complete Analysis of the Epidemiological Scenario around a SARS-CoV-2 Reinfection: Previous Infection Events and Subsequent Transmission. PMID:34494886
The chloroplast genome of Amygdalus L. (Rosaceae) reveals the phylogenetic relationship and divergence time. PMID:34493218
Correction to: First monk seal from the Southern Hemisphere rewrites the evolutionary history of true seals. PMID:34493084
Revisiting the heterogeneous global genomic population structure of Leishmania infantum. PMID:34491157
Mycorrhizal status is a poor predictor of the distribution of herbaceous species along the gradient of soil nutrient availability in coastal and grassland habitats. PMID:34490546
Severe SARS-CoV-2 Breakthrough Reinfection With Delta Variant After Recovery From Breakthrough Infection by Alpha Variant in a Fully Vaccinated Health Worker. PMID:34490316
Identification of a Novel Quinvirus in the Family Betaflexiviridae That Infects Winter Wheat. PMID:34489904
Whole genome sequences reveal the Xanthomonas perforans population is shaped by the tomato production system. PMID:34489540
Diversity and flexibility of algal symbiont community in globally distributed larger benthic foraminifera of the genus Amphistegina. PMID:34488648
SARS-CoV-2 B.1.617.2 Delta variant replication and immune evasion. PMID:34488225
The fall and rise of group B Streptococcus in dairy cattle: reintroduction due to human-to-cattle host jumps? PMID:34486971
Comparative analysis of plastomes in Oxalidaceae: Phylogenetic relationships and potential molecular markers. PMID:34485770
First Coronavirus Active Survey in Rodents From the Canary Islands. PMID:34485436
A molecular phylogeny of the Chinese Sinopoda spiders (Sparassidae, Heteropodinae): implications for taxonomy. PMID:34484980
Olfactory receptor gene evolution is unusually rapid across Tetrapoda and outpaces chemosensory phenotypic change. PMID:34484311
Functional Characterisation of Banana (Musa spp.) 2-Oxoglutarate-Dependent Dioxygenases Involved in Flavonoid Biosynthesis. PMID:34484266
Investigating the possible origin and transmission routes of SARS-CoV-2 genomes and variants of concern in Bangladesh. PMID:34481060
Evolution of Methyltransferase-Like (METTL) Proteins in Metazoa: A Complex Gene Family Involved in Epitranscriptomic Regulation and Other Epigenetic Processes. PMID:34480573
Stop codon readthrough alters the activity of a POU/Oct transcription factor during Drosophila development. PMID:34479564
Inconsistent PCR detection of Shiga toxin-producing Escherichia coli: Insights from whole genome sequence analyses. PMID:34478476
Free threonine in human breast milk is related to infant intestinal microbiota composition. PMID:34477981
The Evolutionary Dynamics of Repetitive DNA and Its Impact on the Genome Diversification in the Genus Sorghum. PMID:34475879
Soil fungal communities of ectomycorrhizal dominated woodlands across West Africa. PMID:34475800
A new synonym of Polygonatum in China, based on morphological and molecular evidence. PMID:34475796
Light intensity and spectral composition drive reproductive success in the marine benthic diatom Seminavis robusta. PMID:34475415
Blue mussels of the Mytilus edulis species complex from South America: The application of species delimitation models to DNA sequence variation. PMID:34473778
Systematic revision of Gatesona (Crassiclitellata, Lumbricidae), an endemic earthworm genus from the Massif Central (France). PMID:34473718
The complete chloroplast genome sequence of Callitriche palustris (Plantaginaceae). PMID:34471702
Complete chloroplast genome sequences of the medicinal plant Piper hancei. PMID:34471701
Characterization of the complete plastid genome of Abies forrestii (Pinaceae) from southwest China. PMID:34471700
The first complete plastome of Chimonobambusa quadrangularis (Fenzl) Makino: assembly, annotation and phylogenetic analysis. PMID:34471698
The complete mitochondrial genome of Tetragonia tetragonioides (Pall.) Kuntze and its phylogenetic implications. PMID:34471696
Characterization and phylogenetic analysis of the complete chloroplast genome of Tulipa patens (Liliaceae). PMID:34471694
Complete chloroplast genome of the mixotrophic chrysophyte Poterioochromonas malhamensis (Ochromonadales, Synurophyceae) from Van Lake in Eastern Anatolia. PMID:34471690
Genome erosion and evidence for an intracellular niche - exploring the biology of mycoplasmas in Atlantic salmon. PMID:34471330
Heimdallarchaea encodes profilin with eukaryotic-like actin regulation and polyproline binding. PMID:34471213
Interspecies variation of larval locomotion kinematics in the genus Drosophila and its relation to habitat temperature. PMID:34470643
A globally diverse reference alignment and panel for imputation of mitochondrial DNA variants. PMID:34470617
The Ancient Salicoid Genome Duplication Event: A Platform for Reconstruction of De Novo Gene Evolution in Populus trichocarpa. PMID:34469536
A Probabilistic Model for Indel Evolution: Differentiating Insertions from Deletions. PMID:34469521
Human AdV-20-42-42, a Promising Novel Adenoviral Vector for Gene Therapy and Vaccine Product Development. PMID:34469243
Microbial characterisation and Cold-Adapted Predicted Protein (CAPP) database construction from the active layer of Greenland's permafrost. PMID:34468725
Remote homology clustering identifies lowly conserved families of effector proteins in plant-pathogenic fungi. PMID:34468307
Stable-Isotope-Informed, Genome-Resolved Metagenomics Uncovers Potential Cross-Kingdom Interactions in Rhizosphere Soil. PMID:34468166
Molecular analysis of the 2012 Bundibugyo virus disease outbreak. PMID:34467242
Chromosome-scale assembly of the Dendrobium chrysotoxum genome enhances the understanding of orchid evolution. PMID:34465765
Chromosome-scale assembly and evolution of the tetraploid Salvia splendens (Lamiaceae) genome. PMID:34465761
SalmoSim: the development of a three-compartment in vitro simulator of the Atlantic salmon GI tract and associated microbial communities. PMID:34465363
Haem-responsive gene transporter enables mobilization of host haem in ticks. PMID:34465215
Alternative Transmission Patterns in Independently Acquired Nutritional Cosymbionts of Dictyopharidae Planthoppers. PMID:34465022
Horizontal transfer and subsequent explosive expansion of a DNA transposon in sea kraits (Laticauda). PMID:34464541
Compact RNA editors with small Cas13 proteins. PMID:34462587
Campylobacter jejuni genotypes are associated with post-infection irritable bowel syndrome in humans. PMID:34462533
Genomic comparisons and phylogenetic analysis of mastitis-related staphylococci with a focus on adhesion, biofilm, and related regulatory genes. PMID:34462461
The genetics and evolution of eye color in domestic pigeons (Columba livia). PMID:34460822
Evaluation of DNA extraction protocols from liquid-based cytology specimens for studying cervical microbiota. PMID:34460815
TIAMMAt: Leveraging Biodiversity to Revise Protein Domain Models, Evidence from Innate Immunity. PMID:34459919
Patterns of the fecal microbiota in the Juan Fernández fur seal (Arctocephalus philippii). PMID:34459554
Patterns of protist distribution and diversification in alpine lakes across Europe. PMID:34459549
Diverse methanogens, bacteria and tannase genes in the feces of the endangered volcano rabbit (Romerolagus diazi). PMID:34458021
Fungal Planet description sheets: 1112-1181. PMID:34456379
Dieback and decline pathogens of olive trees in South Africa. PMID:34456377
Fungal associates of an invasive pine-infesting bark beetle, Dendroctonus valens, including seven new Ophiostomatalean fungi. PMID:34456376
Mating genes in Calonectria and evidence for a heterothallic ancestral state. PMID:34456375
High diversity of Diaporthe species associated with pear shoot canker in China. PMID:34456374
Cryphonectriaceae on Myrtales in China: phylogeny, host range, and pathogenicity. PMID:34456373
Novel collophorina-like genera and species from Prunus trees and vineyards in Germany. PMID:34456371
Cytospora (Diaporthales) in China. PMID:34456370
Swine influenza A virus subtypes circulating in Brazilian commercial pig herds from 2012 to 2019. PMID:34455547
Comparative genomic analysis of a naturally born serpentized pig reveals putative mutations related to limb and bone development. PMID:34454433
Detection and Molecular Characterization of Two Gammaherpesviruses from Pantesco Breed Donkeys during an Outbreak of Mild Respiratory Disease. PMID:34452391
Severe SARS-CoV-2 Infection in a Cat with Hypertrophic Cardiomyopathy. PMID:34452375
Molecular Epidemiology and Characterization of Picobirnavirus in Wild Deer and Cattle from Australia: Evidence of Genogroup I and II in the Upper Respiratory Tract. PMID:34452357
Rise and Fall of SARS-CoV-2 Lineage A.27 in Germany. PMID:34452356
Molecular Biology and Pathological Process of an Infectious Bronchitis Virus with Enteric Tropism in Commercial Broilers. PMID:34452342
Feline Morbillivirus in Southern Italy: Epidemiology, Clinico-Pathological Features and Phylogenetic Analysis in Cats. PMID:34452315
Live Bird Markets in Nigeria: A Potential Reservoir for H9N2 Avian Influenza Viruses. PMID:34452311
An Outbreak of Dengue Virus Serotype 2 Cosmopolitan Genotype in Nepal, 2017. PMID:34452310
Transcriptomes of Saussurea (Asteraceae) Provide Insights into High-Altitude Adaptation. PMID:34451759
Species Delimitation and Conservation in Taxonomically Challenging Lineages: The Case of Two Clades of Capurodendron (Sapotaceae) in Madagascar. PMID:34451747
Genome-Wide Identification and Functional Investigation of 1-Aminocyclopropane-1-carboxylic Acid Oxidase (ACO) Genes in Cotton. PMID:34451744
Two New Species of Impatiens from China, and Taxonomic Insights into the Longifilamenta Group, Which Is Endemic to China. PMID:34451742
Genome Analysis of Phytophthora nicotianae JM01 Provides Insights into Its Pathogenicity Mechanisms. PMID:34451665
The Chloroplast Phylogenomics and Systematics of Zoysia (Poaceae). PMID:34451562
Canine Circovirus in Foxes from Northern Italy: Where Did It All Begin? PMID:34451466
Predominance of the SARS-CoV-2 Lineage P.1 and Its Sublineage P.1.2 in Patients from the Metropolitan Region of Porto Alegre, Southern Brazil in March 2021. PMID:34451453
Active Circulation of Madariaga Virus, a Member of the Eastern Equine Encephalitis Virus Complex, in Northeast Brazil. PMID:34451447
Evaluation of Potential Transfer of the Pathogen Saprolegnia parasitica between Farmed Salmonids and Wild Fish. PMID:34451390
Horizontal Transfer of Microbial Toxin Genes to Gall Midge Genomes. PMID:34450656
ProteinEvolverABC: Coestimation of Recombination and Substitution Rates in Protein Sequences by approximate Bayesian computation. PMID:34450622
Parasitism to mutualism continuum for Joshua trees inoculated with different communities of arbuscular mycorrhizal fungi from a desert elevation gradient. PMID:34449786
Plastid phylogenomics of Pleurothallidinae (Orchidaceae): Conservative plastomes, new variable markers, and comparative analyses of plastid, nuclear, and mitochondrial data. PMID:34449781
A Phylogenetic Approach to Structural Variation in Organization of Nuclear Group I Introns and Their Ribozymes. PMID:34449660
Next-generation sequencing studies on the E1-HVR1 region of hepatitis C virus (HCV) from non-high-risk HCV patients living in Punjab and Khyber Pakhtunkhwa, Pakistan. PMID:34448937
The complete chloroplast genome sequence of Cinnamomum septentrionale (Lauraceae) from Sichuan Province, China, a medicinal plant and phylogenetic analysis. PMID:34447894
Characterization of the complete chloroplast genome of Salix linearistipularis (Franch.) Hao 1936. PMID:34447893
The complete chloroplast genome sequence of Bambusa albolineata (bambusodae). PMID:34447891
The complete chloroplast genome of Castanopsis sieboldii (Makino) Hatus (Fagaceae). PMID:34447890
The complete chloroplast genome sequence of Buxus megistophylla Levl. (Buxaceae Dumort.). PMID:34447883
Distinct patterns of within-host virus populations between two subgroups of human respiratory syncytial virus. PMID:34446722
Programmed Cell Death in Developing Brachypodium distachyon Grain. PMID:34445790
The Effect of Common Viral Inactivation Techniques on 16S rRNA Amplicon-Based Analysis of the Gut Microbiota. PMID:34442834
Drought and Plant Community Composition Affect the Metabolic and Genotypic Diversity of Pseudomonas Strains in Grassland Soils. PMID:34442756
An Update on Trichoderma Mitogenomes: Complete De Novo Mitochondrial Genome of the Fungal Biocontrol Agent Trichoderma harzianum (Hypocreales, Sordariomycetes), an Ex-Neotype Strain CBS 226.95, and Tracing the Evolutionary Divergences of Mitogenomes in Trichoderma. PMID:34442643
Comparative Mitogenomic Analysis of Five Awl Skippers (Lepidoptera: Hesperiidae: Coeliadinae) and Their Phylogenetic Implications. PMID:34442323
Structural Features and Phylogenetic Implications of 11 New Mitogenomes of Typhlocybinae (Hemiptera: Cicadellidae). PMID:34442244
Spatial and Species Variations of Bacterial Community Structure and Putative Function in Seagrass Rhizosphere Sediment. PMID:34440596
Update on the Phylodynamics of SADS-CoV. PMID:34440564
Genome Characterization, Comparison and Phylogenetic Analysis of Complete Mitochondrial Genome of Evolvulus alsinoides Reveals Highly Rearranged Gene Order in Solanales. PMID:34440513
Diversity and Paleodemography of the Addax (Addax nasomaculatus), a Saharan Antelope on the Verge of Extinction. PMID:34440410
Sequencing and de Novo Assembly of Abaca (Musa textilis Née) var. Abuab Genome. PMID:34440376
Gene Flow and Diversification in Himalopsyche martynovi Species Complex (Trichoptera: Rhyacophilidae) in the Hengduan Mountains. PMID:34440048
New Species of Talaromyces (Fungi) Isolated from Soil in Southwestern China. PMID:34439977
hnRNP A/B Proteins: An Encyclopedic Assessment of Their Roles in Homeostasis and Disease. PMID:34439945
Determination of a Tentative Epidemiological Cut-Off Value (ECOFF) for Dalbavancin and Enterococcus faecium. PMID:34438965
Epidemiology, Genetic Characterization, and Pathogenesis of Avian Influenza H5N8 Viruses Circulating in Northern and Southern Parts of Egypt, 2017-2019. PMID:34438666
Maxicircle architecture and evolutionary insights into Trypanosoma cruzi complex. PMID:34437557
Genomic and Experimental Investigations of Auriscalpium and Strobilurus Fungi Reveal New Insights into Pinecone Decomposition. PMID:34436218
Biodiversity of Lignicolous Freshwater Hyphomycetes from China and Thailand and Description of Sixteen Species. PMID:34436208
Basidiobolus omanensis sp. nov. Causing Angioinvasive Abdominal Basidiobolomycosis. PMID:34436192
The complete chloroplast genome sequence of Trikeraia hookeri. PMID:34435130
Characterization and phylogenetic analysis of the complete plastome of Veronica undulata (Plantaginaceae). PMID:34435127
The complete chloroplast genome sequence of Brachypodium sylvaticum. PMID:34435123
Complete chloroplast genome and phylogenetic analysis of Glebionis coronaria (L.) Cass. ex Spach (Asteraceae). PMID:34435122
The complete chloroplast genome of Medicago ruthenica cv. 'Taihang' (Fabaceae) from Shanxi, China. PMID:34435120
Comparative analysis of the complete chloroplast genome between tetraploidy and diploidy of Cyclocarya paliurus (Batal.) Iljinskaja. PMID:34435115
The complete mitochondrial genome of Poecilocoris druraei (Linnaeus, 1771) (Hemiptera: Scutelleridae) and its phylogenetic implications. PMID:34435111
The complete chloroplast genome of Cotyledon tomentosa Harv. PMID:34435109
The complete chloroplast genome of Keteleeria evelyniana. PMID:34435107
A new Andean treefrog (Amphibia: Hyloscirtus bogotensis group) from Ecuador: an example of community involvement for conservation. PMID:34434655
Novel Klebsiella pneumoniae K23-Specific Bacteriophages From Different Families: Similarity of Depolymerases and Their Therapeutic Potential. PMID:34434173
Acute SARS-CoV-2 infection is associated with an increased abundance of bacterial pathogens, including Pseudomonas aeruginosa in the nose. PMID:34433082
Parallel pathways for recruiting effector proteins determine centromere drive and suppression. PMID:34433012
Genetic diversity and structure of the noble crayfish populations in the Balkan Peninsula revealed by mitochondrial and microsatellite DNA markers. PMID:34430076
Remotely sensed between-individual functional trait variation in a temperate forest. PMID:34429885
Fungi inhabiting attine ant colonies: reassessment of the genus Escovopsis and description of Luteomyces and Sympodiorosea gens. nov. PMID:34429165
The plastome sequence of Bactris gasipaes and evolutionary analysis in tribe Cocoseae (Arecaceae). PMID:34428237
Causes and Consequences of Purifying Selection on SARS-CoV-2. PMID:34427640
Horizontal Gene Transfer Is the Main Driver of Antimicrobial Resistance in Broiler Chicks Infected with Salmonella enterica Serovar Heidelberg. PMID:34427525
Analysis of meiosis in Pristionchus pacificus reveals plasticity in homolog pairing and synapsis in the nematode lineage. PMID:34427184
Enhanced Mutation Rate, Relaxed Selection, and the "Domino Effect" are associated with Gene Loss in Blattabacterium, A Cockroach Endosymbiont. PMID:34426845
Homeobox Transcription Factors Are Required for Fungal Development and the Suppression of Host Defense Mechanisms in the Colletotrichum scovillei-Pepper Pathosystem. PMID:34425710
Pseudomonas capsici sp. nov., a plant-pathogenic bacterium isolated from pepper leaf in Georgia, USA. PMID:34424837
Real-Time Genomics for Tracking Severe Acute Respiratory Syndrome Coronavirus 2 Border Incursions after Virus Elimination, New Zealand. PMID:34424164
Characterization and Comparative Analysis of Complete Chloroplast Genomes of Three Species From the Genus Astragalus (Leguminosae). PMID:34422006
Plastome Evolution in the Hyperdiverse Genus Euphorbia (Euphorbiaceae) Using Phylogenomic and Comparative Analyses: Large-Scale Expansion and Contraction of the Inverted Repeat Region. PMID:34421963
Chloroplast Phylogenomic Analyses Resolve Multiple Origins of the Kengyilia Species (Poaceae: Triticeae) via Independent Polyploidization Events. PMID:34421940
New Perkinsea Parasitoids of Dinoflagellates Distantly Related to Parviluciferaceae Members. PMID:34421856
Transcriptomic Analysis of Salivary Glands of Ornithodoros brasiliensis Aragão, 1923, the Agent of a Neotropical Tick-Toxicosis Syndrome in Humans. PMID:34421661
The C-terminus of non-structural protein 1 (NS1) in H5N8 clade 2.3.4.4 avian influenza virus affects virus fitness in human cells and virulence in mice. PMID:34420477
CovidPhy: A tool for phylogeographic analysis of SARS-CoV-2 variation. PMID:34419470
Cryptococcus depauperatus, a close relative of the human-pathogen C. neoformans, associated with coffee leaf rust (Hemileia vastatrix) in Cameroon. PMID:34417998
Human astrovirus types 1, 4 and 5 circulating among children with acute gastroenteritis in a rural Brazilian state, 2010-2016. PMID:34417874
Description of larval morphology and phylogenetic relationships of Heterotemna tenuicornis (Silphidae). PMID:34417480
ExOrthist: a tool to infer exon orthologies at any evolutionary distance. PMID:34416914
Derived woodiness and annual habit evolved in African umbellifers as alternative solutions for coping with drought. PMID:34416875
Evolution of viral variants in remdesivir-treated and untreated SARS-CoV-2-infected pediatrics patients. PMID:34415583
The Ascidia Ciona robusta Provides Novel Insights on the Evolution of the AP-1 Transcriptional Complex. PMID:34414189
N439K Variant in Spike Protein Alter the Infection Efficiency and Antigenicity of SARS-CoV-2 Based on Molecular Dynamics Simulation. PMID:34414185
Longitudinal variations in the gastrointestinal microbiome of the white shrimp, Litopenaeus vannamei. PMID:34414030
Comparative Genomics of Potato Common Scab-Causing Streptomyces spp. Displaying Varying Virulence. PMID:34413844
Decisive Effects of Life Stage on the Gut Microbiota Discrepancy Between Two Wild Populations of Hibernating Asiatic Toads (Bufo gargarizans). PMID:34413833
Integrative taxonomy reveals a new species of the genus Burmoniscus (Isopoda, Philosciidae) from the Xuefeng Mountains, China. PMID:34413691
Estimating the age of the subfamily Orthocoronavirinae using host divergence times as calibration ages at two internal nodes. PMID:34411808
Veronia nyctiphanis gen. nov., sp. nov., Isolated from the Stomach of the Euphausiid Nyctiphanes simplex (Hansen, 1911) in the Gulf of California, and Reclassification of Enterovibrio pacificus as Veronia pacifica comb. nov. PMID:34410465
The whale shark genome reveals patterns of vertebrate gene family evolution. PMID:34409936
Complete plastid genome of Primula calliantha Franch. (Primulaceae): an alpine ornamental plant endemic to Hengduan Mountain, China. PMID:34409165
The complete chloroplast genome of Rhodobryum laxelimbatum (Hampe ex Ochi) Z. Iwatsuki and T. J. Koponen. PMID:34409162
Characterization of the DNA molecular sequence of complete plastid genome of Paeonia rockii subsp. taibaishanica, an endemic species in China. PMID:34409160
The complete chloroplast genome of Petunia exserta (Solanaceae: Petunioideae), an endangered ornamental species. PMID:34409158
The complete chloroplast genome sequence of medicinal plant: Cynanchum thesioides (Asclepiadaceae). PMID:34409153
Functional Classification of Super-Large Families of Enzymes Based on Substrate Binding Pocket Residues for Biocatalysis and Enzyme Engineering Applications. PMID:34409021
Cytospora and Diaporthe Species Associated With Hazelnut Canker and Dieback in Beijing, China. PMID:34408987
Two new species of Hirsutella (Ophiocordycipitaceae, Sordariomycetes) that are parasitic on lepidopteran insects from China. PMID:34408539
Structural and mechanistic basis for protein glutamylation by the kinase fold. PMID:34407442
Plastome variation and phylogeny of Taxillus (Loranthaceae). PMID:34407123
Phylogenomics of a new fungal phylum reveals multiple waves of reductive evolution across Holomycota. PMID:34404788
Genome-wide analysis of R2R3-MYB transcription factors family in the autopolyploid Saccharum spontaneum: an exploration of dominance expression and stress response. PMID:34404342
Complete genome analysis of African swine fever virus responsible for outbreaks in domestic pigs in 2018 in Burundi and 2019 in Malawi. PMID:34402985
Multiple Losses of MSH1, Gain of mtMutS, and Other Changes in the MutS Family of DNA Repair Proteins in Animals. PMID:34402879
Genome-wide comparative analyses of GATA transcription factors among seven Populus genomes. PMID:34400697
A New Model Trypanosomatid, Novymonas esmeraldas: Genomic Perception of Its "Candidatus Pandoraea novymonadis" Endosymbiont. PMID:34399629
Hidden Viral Sequences in Public Sequencing Data and Warning for Future Emerging Diseases. PMID:34399612
Isolation and genetic characterization of a relapsing fever spirochete isolated from Ornithodoros puertoricensis collected in central Panama. PMID:34398885
Recovery of Deleted Deep Sequencing Data Sheds More Light on the Early Wuhan SARS-CoV-2 Epidemic. PMID:34398234
Gotree/Goalign: toolkit and Go API to facilitate the development of phylogenetic workflows. PMID:34396097
Characterization and phylogenetic analysis of the complete chloroplast genome of Amaranthus viridis (Amaranthaceae). PMID:34395893
Characterization of the complete chloroplast genome of Dendrobium christyanum and its phylogenetic analysis. PMID:34395891
The complete chloroplast genome of Rhododendron molle and its phylogenetic position within Ericaceae. PMID:34395886
Chloroplast genome of Tillandsia marconae till & Vitek (Bromeliaceae), a hyperarid desert endangered species. PMID:34395883
Molecular Phylogenesis and Spatiotemporal Spread of SARS-CoV-2 in Southeast Asia. PMID:34395364
Integrative Studies on a New Ciliate Campanella sinica n. sp. (Protista, Ciliophora, Peritrichia) Based on the Morphological and Molecular Data, With Notes on the Phylogeny and Systematics of the Family Epistylididae. PMID:34394066
Identification of Three Clf-Sdr Subfamily Proteins in Staphylococcus warneri, and Comparative Genomics Analysis of a Locus Encoding CWA Proteins in Staphylococcus Species. PMID:34394031
Six new species of Sporothrix from hardwood trees in Poland. PMID:34393590
The complete chloroplast genome of Secale sylvestre (Poaceae: Triticeae). PMID:34392474
Exploring the diversity of coronavirus in sewage during COVID-19 pandemic: Don't miss the forest for the trees. PMID:34391155
SARS-CoV-2 variant of concern P.1 (Gamma) infection in young and middle-aged patients admitted to the intensive care units of a single hospital in Salvador, Northeast Brazil, February 2021. PMID:34390857
An Efficient, Nonphylogenetic Method for Detecting Genes Sharing Evolutionary Signals in Phylogenomic Data Sets. PMID:34390574
Elucidation of the speciation history of three sister species of crown-of-thorns starfish (Acanthaster spp.) based on genomic analysis. PMID:34387305
The chromosome-level reference genome assembly for Dendrobium officinale and its utility of functional genomics research and molecular breeding study. PMID:34386340
Ancient DNA reveals multiple origins and migration waves of extinct Japanese brown bear lineages. PMID:34386259
Comparative Analysis of the Chloroplast Genome for Four Pennisetum Species: Molecular Structure and Phylogenetic Relationships. PMID:34386040
Two new toxic yellow Inocybe species from China: morphological characteristics, phylogenetic analyses and toxin detection. PMID:34385885
Big fruits with tiny tepals: An unusual new species of Lauraceae from southwestern China. PMID:34385882
Fold Evolution before LUCA: Common Ancestry of SH3 Domains and OB Domains. PMID:34383917
Major histocompatibility complex class II DR and DQ evolution and variation in wild capuchin monkey species (Cebinae). PMID:34383779
A wAlbB Wolbachia Transinfection Displays Stable Phenotypic Effects across Divergent Aedes aegypti Mosquito Backgrounds. PMID:34379518
Evolution and Antigenic Advancement of N2 Neuraminidase of Swine Influenza A Viruses Circulating in the United States following Two Separate Introductions from Human Seasonal Viruses. PMID:34379513
Beneficial Cyanosphere Heterotrophs Accelerate Establishment of Cyanobacterial Biocrust. PMID:34379492
Novel PhoH-encoding vibriophages with lytic activity against environmental Vibrio strains. PMID:34379161
High Arsenic Levels Increase Activity Rather than Diversity or Abundance of Arsenic Metabolism Genes in Paddy Soils. PMID:34378947
Expanding Asgard members in the domain of Archaea sheds new light on the origin of eukaryotes. PMID:34378142
The gut microbiome buffers dietary adaptation in Bronze Age domesticated dogs. PMID:34377966
The complete chloroplast genome of Asarum heterotropoides Fr. Schmidt var. mandshuricum (Maxim.) Kitag. (Aristolochiaceae), a traditional Chinese medicine herb. PMID:34377821
The complete chloroplast genome sequence of Pennisetum flaccidum (Poaceae). PMID:34377820
The complete chloroplast genome of Agrostis capillaris L. PMID:34377817
The complete chloroplast genome sequences of an endangered orchid species Paphiopedilum parishii (Orchidaceae). PMID:34377815
The complete chloroplast genome of Salix cupularis Rehder, a sand binder in alpine hillslope, China. PMID:34377814
The complete chloroplast genome of a Cladrastis yunchunii X.W.Li et G.S. PMID:34377812
The complete chloroplast genomes of Camellia chrysanthoides and Camellia achrysantha. PMID:34377808
The complete chloroplast genome sequence of Angelica laevigata Fisch. PMID:34377804
The complete chloroplast genome of balsam aster (Aster ageratoides Turcz. var. scaberulus (Miq.) Ling., Asteraceae). PMID:34377798
The complete chloroplast genome of Endangered species Aristolochia delavayi Franch. (Aristolochiaceae) in Southwestern China. PMID:34377795
Microbiome diversity declines while distinct expansions of Th17, iNKT, and dendritic cell subpopulations emerge after anastomosis surgery. PMID:34376235
High-quality evergreen azalea genome reveals tandem duplication-facilitated low-altitude adaptability and floral scent evolution. PMID:34375461
Molecular Evolution of Ultraviolet Visual Opsins and Spectral Tuning of Photoreceptors in Anemonefishes (Amphiprioninae). PMID:34375382
Predicting the taxonomic and environmental sources of integron gene cassettes using structural and sequence homology of attC sites. PMID:34373573
Novel cetacean morbillivirus in a rare Fraser's dolphin (Lagenodelphis hosei) stranding from Maui, Hawai'i. PMID:34373473
Detection and characterization of the SARS-CoV-2 lineage B.1.526 in New York. PMID:34373458
Genomic characterization of three marine fungi, including Emericellopsis atlantica sp. nov. with signatures of a generalist lifestyle and marine biomass degradation. PMID:34372938
Genomics and transcriptomics of epizoic Seisonidea (Rotifera, syn. Syndermata) reveal strain formation and gradual gene loss with growing ties to the host. PMID:34372786
Specificity and Mechanism of Coronavirus, Rotavirus, and Mammalian Two-Histidine Phosphoesterases That Antagonize Antiviral Innate Immunity. PMID:34372695
Variant Analysis of SARS-CoV-2 Genomes from Belgian Military Personnel Engaged in Overseas Missions and Operations. PMID:34372565
Molecular Evolution and Epidemiological Characteristics of SARS COV-2 in (Northwestern) Poland. PMID:34372500
Towards the Well-Tempered Chloroplast DNA Sequences. PMID:34371563
Differential Evolutionary History in Visual and Olfactory Floral Cues of the Bee-Pollinated Genus Campanula (Campanulaceae). PMID:34371561
Genomic analysis reveals a rapid spread and predominance of lambda (C.37) SARS-COV-2 lineage in Peru despite circulation of variants of concern. PMID:34370324
Hanseniaspora smithiae sp. nov., a Novel Apiculate Yeast Species From Patagonian Forests That Lacks the Typical Genomic Domestication Signatures for Fermentative Environments. PMID:34367085
Mutation hotspots and spatiotemporal distribution of SARS-CoV-2 lineages in Brazil, February 2020-2021. PMID:34363852
The coral symbiont Candidatus Aquarickettsia is variably abundant in threatened Caribbean acroporids and transmitted horizontally. PMID:34363004
Large-scale computational discovery and analysis of virus-derived microbial nanocompartments. PMID:34362927
Timing the evolution of antioxidant enzymes in cyanobacteria. PMID:34362891
Minimally instrumented SHERLOCK (miSHERLOCK) for CRISPR-based point-of-care diagnosis of SARS-CoV-2 and emerging variants. PMID:34362739
Recombination and lineage-specific mutations linked to the emergence of SARS-CoV-2. PMID:34362430
Frequent tRNA gene translocation towards the boundaries with control regions contributes to the highly dynamic mitochondrial genome organization of the parasitic lice of mammals. PMID:34362306
Large scale genomic rearrangements in selected Arabidopsis thaliana T-DNA lines are caused by T-DNA insertion mutagenesis. PMID:34362298
Characterization of Two New Shiga Toxin-Producing Escherichia coli O103-Infecting Phages Isolated from an Organic Farm. PMID:34361962
Virological Surveillance and Molecular Characterization of Human Parainfluenzavirus Infection in Children with Acute Respiratory Illness: Germany, 2015-2019. PMID:34361941
The Histidine Biosynthetic Genes in the Superphylum Bacteroidota-Rhodothermota-Balneolota-Chlorobiota: Insights into the Evolution of Gene Structure and Organization. PMID:34361875
Phylogenetic and Phylodynamic Analyses of HCV Strains Circulating among Patients Using Injectable Drugs in Central Italy. PMID:34361868
Proteins Binding to the Carbohydrate HNK-1: Common Origins? PMID:34360882
PhyloFisher: A phylogenomic package for resolving eukaryotic relationships. PMID:34358228
Complete mitochondrial genome of Dacus vijaysegarani and phylogenetic relationships with congeners and other tephritid fruit flies (Insecta: Diptera). PMID:34357549
Insight into the Phylogenetic Relationships among Three Subfamilies within Heptageniidae (Insecta: Ephemeroptera) along with Low-Temperature Selection Pressure Analyses Using Mitogenomes. PMID:34357316
Description of the Fifth New Species of Russula subsect. Maculatinae from Pakistan Indicates Local Diversity Hotspot of Ectomycorrhizal Fungi in Southwestern Himalayas. PMID:34357034
Diversity, Phylogeny and Antagonistic Activity of Fungal Endophytes Associated with Endemic Species of Cycas (Cycadales) in China. PMID:34356951
Hexapod Assassins' Potion: Venom Composition and Bioactivity from the Eurasian Assassin Bug Rhynocoris iracundus. PMID:34356883
Epidemiological and Molecular Characterization of Blastocystis Infection in Children Attending Daycare Centers in Medellín, Colombia. PMID:34356524
Male Differentiation in the Marine Copepod Oithona nana Reveals the Development of a New Nervous Ganglion and Lin12-Notch-Repeat Protein-Associated Proteolysis. PMID:34356512
Single Amino Acid Mutation of Pyranose 2-Oxidase Results in Increased Specificity for Diabetes Biomarker 1,5-Anhydro-D-Glucitol. PMID:34354532
Metagenomic approaches reveal differences in genetic diversity and relative abundance of nitrifying bacteria and archaea in contrasting soils. PMID:34354121
Haplotype-resolved genome assembly and allele-specific gene expression in cultivated ginger. PMID:34354050
Haplotype-resolved genome of diploid ginger (Zingiber officinale) and its unique gingerol biosynthetic pathway. PMID:34354044
A squalene-hopene cyclase in Schizosaccharomyces japonicus represents a eukaryotic adaptation to sterol-limited anaerobic environments. PMID:34353908
Orthology Clusters from Gene Trees with Possvm. PMID:34352080
Rational design of West Nile virus vaccine through large replacement of 3' UTR with internal poly(A). PMID:34351689
The complete mitochondrial genome of the freshwater crab Tenuilapotamon latilum kaiyangense Dai et Li,1985 (Decapoda: Brachyura: Potamoidea). PMID:34350359
Complete chloroplast genome sequence of medicinal plant Potentilla lineata Treviranus (Rosaceae) from Yunnan, China. PMID:34350355
The complete chloroplast genome sequence of medicinal plant: Peganum nigellastrum (Zygophyllaceae). PMID:34350349
The complete mitochondrial genome of the strawberry aphid Chaetosiphon fragaefolii Cockerell, 1901 (Hemiptera: Aphididae) from California, USA. PMID:34350347
The complete chloroplast genome of Agave fourcroydes. PMID:34350343
Phylogeny of the Varidnaviria Morphogenesis Module: Congruence and Incongruence With the Tree of Life and Viral Taxonomy. PMID:34349745
Cyanescent Gyroporus (Gyroporaceae, Boletales) from China. PMID:34349607
Apicidin biosynthesis is linked to accessory chromosomes in Fusarium poae isolates. PMID:34348672
Increased abundance of secreted hydrolytic enzymes and secondary metabolite gene clusters define the genomes of latent plant pathogens in the Botryosphaeriaceae. PMID:34348651
Prediction of HIV drug resistance based on the 3D protein structure: Proposal of molecular field mapping. PMID:34347839
The complete plastome sequence of Illigera grandiflora. PMID:34345709
The complete chloroplast genome of Choerospondias axillaris (Roxb.) B. L. Burtt et A. W. Hill, an ancient and versatile plant. PMID:34345708
The complete chloroplast genome of Sauvagesia rhodoleuca, an endangered species endemic to China. PMID:34345707
The first mitochondrial genome of a South America parthenogenetic lizard (Squamata: Gymnophthalmidae). PMID:34345705
Complete chloroplast genomes of Camellia pubipetala Y. Wan et S. Z. Huang and Camellia debaoensis R. C. Hu et Y. Q. Liufu. PMID:34345702
The complete chloroplast genome sequence of the mangrove associate species Talipariti tiliaceum. PMID:34345700
The complete chloroplast genome of Ocimum tenuiflorum L. subtype Krishna Tulsi and its phylogenetic analysis. PMID:34345695
Complete mitochondrial genome of Coscinodiscus granii (Coscinodiscophyceae, Bacillariophyta). PMID:34345688
The complete chloroplast genome sequence of wild Japanese pepper Tubocapsicum anomalum Makino (Solanaceae). PMID:34345686
The complete mitochondrial genome of Lucilia shenyangensis (Diptera: Calliphoridae). PMID:34345684
The complete chloroplast genome of Camellia brevistyla (Hayata) Coh. St. (Theaceae: Ericales) from China based on PacBio and Illumina data. PMID:34345681
The complete chloroplast genome sequence of Bambusa stenoaurita (Bambusoideae). PMID:34345678
The complete chloroplast genome and phylogenetic analysis of Piptanthus concolor Craib (Leguminosae). PMID:34345677
Atypical DNA methylation, sRNA-size distribution, and female gametogenesis in Utricularia gibba. PMID:34344949
Evolution of a key enzyme of aerobic metabolism reveals Proterozoic functional subunit duplication events and an ancient origin of animals. PMID:34344935
Phylogeography and molecular species delimitation reveal cryptic diversity in Potamolithus (Caenogastropoda: Tateidae) of the southwest basin of the Andes. PMID:34344905
DrosoPhyla: Resources for Drosophilid Phylogeny and Systematics. PMID:34343293
Ancestral Physical Stress and Later Immune Gene Family Expansions Shaped Bivalve Mollusc Evolution. PMID:34343278
Discovery of the Pseudomonas Polyyne Protegencin by a Phylogeny-Guided Study of Polyyne Biosynthetic Gene Cluster Diversity. PMID:34340549
Origin, phylogeny, variability and epitope conservation of SARS-CoV-2 worldwide. PMID:34339772
Zika virus NS2A inhibits interferon signaling by degradation of STAT1 and STAT2. PMID:34338586
Investigation and management of an outbreak of COVID-19 infection in an acute admission unit in a District General Hospital: lessons learnt. PMID:34337381
Relative performance of customized and universal probe sets in target enrichment: A case study in subtribe Malinae. PMID:34336405
Lineage-specific vs. universal: A comparison of the Compositae1061 and Angiosperms353 enrichment panels in the sunflower family. PMID:34336403
HybPhaser: A workflow for the detection and phasing of hybrids in target capture data sets. PMID:34336402
New targets acquired: Improving locus recovery from the Angiosperms353 probe set. PMID:34336399
Deciphering the Taxonomic Delimitation of Ottelia acuminata (Hydrocharitaceae) Using Complete Plastomes as Super-Barcodes. PMID:34335651
Transcriptome Response to Cadmium Exposure in Barley (Hordeum vulgare L.). PMID:34335638
"Jumping Jack": Genomic Microsatellites Underscore the Distinctiveness of Closely Related Pseudoperonospora cubensis and Pseudoperonospora humuli and Provide New Insights Into Their Evolutionary Past. PMID:34335513
Physiological and Genomic Characterization of a Hyperthermophilic Archaeon Archaeoglobus neptunius sp. nov. Isolated From a Deep-Sea Hydrothermal Vent Warrants the Reclassification of the Genus Archaeoglobus. PMID:34335500
An ancient whole-genome duplication event and its contribution to flavor compounds in the tea plant (Camellia sinensis). PMID:34333548
Characterization of Penaeus vannamei mitogenome focusing on genetic diversity. PMID:34329352
Characterization and Phylogenetic Analysis of the Mitochondrial Genome Sequence of Nisia fuliginosa (Hemiptera: Fulgoroidea: Meenoplidae). PMID:34327530
Genomic Diversity of the Ostreid Herpesvirus Type 1 Across Time and Location and Among Host Species. PMID:34326830
Comparison of Two Aspergillus oryzae Genomes From Different Clades Reveals Independent Evolution of Alpha-Amylase Duplication, Variation in Secondary Metabolism Genes, and Differences in Primary Metabolism. PMID:34326825
Evolution of hes gene family in vertebrates: the hes5 cluster genes have specifically increased in frogs. PMID:34325655
Microbiome of the wasp Vespula pensylvanica in native and invasive populations, and associations with Moku virus. PMID:34324610
Massive colonization of protein-coding exons by selfish genetic elements in Paramecium germline genomes. PMID:34324490
An astonishing wealth of new proteasome homologs. PMID:34323935
Reduced antibody cross-reactivity following infection with B.1.1.7 than with parental SARS-CoV-2 strains. PMID:34323691
Comparisons within the Rice GA 2-Oxidase Gene Family Revealed Three Dominant Paralogs and a Functional Attenuated Gene that Led to the Identification of Four Amino Acid Variants Associated with GA Deactivation Capability. PMID:34322729
Reconsideration of species boundaries and proposed DNA barcodes for Calonectria. PMID:34322181
Comparative Repeat Profiling of Two Closely Related Conifers (Larix decidua and Larix kaempferi) Reveals High Genome Similarity With Only Few Fast-Evolving Satellite DNAs. PMID:34322154
Commercial Organic Versus Conventional Whole Rye and Wheat Flours for Making Sourdough Bread: Safety, Nutritional, and Sensory Implications. PMID:34322100
Variation in the Evolution and Sequences of Proglucagon and the Receptors for Proglucagon-Derived Peptides in Mammals. PMID:34322093
The first draft genome of feather grasses using SMRT sequencing and its implications in molecular studies of Stipa. PMID:34321531
Characterizing chloroplast genomes and inferring maternal divergence of the Triticum-Aegilops complex. PMID:34321524
Molecular mechanism for kinesin-1 direct membrane recognition. PMID:34321209
An Ancient Clade of Penelope-Like Retroelements with Permuted Domains Is Present in the Green Lineage and Protists, and Dominates Many Invertebrate Genomes. PMID:34320655
Leafless epiphytic orchids share Ceratobasidiaceae mycorrhizal fungi. PMID:34319462
Development of a Biocontained Toluene-Degrading Bacterium for Environmental Protection. PMID:34319138
Molecular phylogenetic assessment of Spirobranchus kraussii-complex (Annelida: Serpulidae) from the Japanese Archipelago. PMID:34316401
Taxonomic and phylogenetic characterizations reveal four new species of Simplicillium (Cordycipitaceae, Hypocreales) from Guizhou, China. PMID:34316013
Factors influencing SARS-CoV-2 transmission and outbreak control measures in densely populated settings. PMID:34315928
Genome of the pincer wasp Gonatopus flavifemur reveals unique venom evolution and a dual adaptation to parasitism and predation. PMID:34315471
Genomic regions associated with adaptation to predation in Daphnia often include members of expanded gene families. PMID:34315260
Deciphering Symbiotic Interactions of "Candidatus Aenigmarchaeota" with Inferred Horizontal Gene Transfers and Co-occurrence Networks. PMID:34313464
Multicomponent nature underlies the extraordinary mechanical properties of spider dragline silk. PMID:34312234
The balance of crystalline and amorphous regions in the fibroin structure underpins the tensile strength of bagworm silk. PMID:34311769
Coral symbionts evolved a functional polycistronic flavodiiron gene. PMID:34309771
Southern introgression increases adaptive immune gene variability in northern range margin populations of Fire-bellied toad. PMID:34306661
The impact of climate change on western Plethodon salamanders' distribution. PMID:34306628
Gene Loss, Pseudogenization in Plastomes of Genus Allium (Amaryllidaceae), and Putative Selection for Adaptation to Environmental Conditions. PMID:34306019
Spatial Virome Analysis of Zanthoxylum armatum Trees Affected With the Flower Yellowing Disease. PMID:34305869
An Overview of 24 Years of Molecular Phylogenetic Studies in Phallales (Basidiomycota) With Notes on Systematics, Geographic Distribution, Lifestyle, and Edibility. PMID:34305850
Comparative chloroplast genome analysis of Impatiens species (Balsaminaceae) in the karst area of China: insights into genome evolution and phylogenomic implications. PMID:34303345
Yeast Ssd1 is a non-enzymatic member of the RNase II family with an alternative RNA recognition site. PMID:34302485
Genomic architecture constrained placental mammal X Chromosome evolution. PMID:34301625
Comparative genome and transcriptome analyses reveal innate differences in response to host plants by two color forms of the two-spotted spider mite Tetranychus urticae. PMID:34301178
Molecular Evolution of clock Genes in Vertebrates. PMID:34297154
The genome of the Pyrenean desman and the effects of bottlenecks and inbreeding on the genomic landscape of an endangered species. PMID:34295371
Horizontal Transmission of Stress Resistance Genes Shape the Ecology of Beta- and Gamma-Proteobacteria. PMID:34295324
Giardia duodenalis infection in dogs from the metropolitan area of Lisbon, Portugal: prevalence, genotyping and associated risk factors. PMID:34295036
The methylome of the model arbuscular mycorrhizal fungus, Rhizophagus irregularis, shares characteristics with early diverging fungi and Dikarya. PMID:34294866
Comparative analysis of the bronchoalveolar microbiome in Portuguese patients with different chronic lung disorders. PMID:34294826
Links between fecal microbiota and the response to vaccination against influenza A virus in pigs. PMID:34294732
A minus-end directed kinesin motor directs gravitropism in Physcomitrella patens. PMID:34294690
Genomics and transcriptomics yields a system-level view of the biology of the pathogen Naegleria fowleri. PMID:34294116
Putative mobilized colistin resistance genes in the human gut microbiome. PMID:34294041
Functional dissection and modulation of the BirA protein for improved autotrophic growth of gas-fermenting Clostridium ljungdahlii. PMID:34291572
The complete chloroplast genome sequence of the medicinal plant Persicaria filiformis. PMID:34291171
The complete chloroplast genome of Platycerium wallichii (Polypodiaceae), an endangered and ornamental fern species. PMID:34291168
Complete mitochondrial genome of Gazella subgutturosa reginae (Bovidae: Antilopinae). PMID:34291167
The complete chloroplast genome sequence of Gentianopsis grandis (Harry Sm.) Ma (Gentianaceae) and phylogenetic analysis. PMID:34291164
Characterization of the complete chloroplast genome of Murraya exotica (Rutaceae) from Yunnan Province, China. PMID:34291163
The complete chloroplast genome of Pleione maculata, an orchid with important ornamental value and medicinal value. PMID:34291160
Maternal cecal microbiota transfer rescues early-life antibiotic-induced enhancement of type 1 diabetes in mice. PMID:34289377
A selective sweep in the Spike gene has driven SARS-CoV-2 human adaptation. PMID:34289344
Positive Selection of Transcription Factors Is a Prominent Feature of the Evolution of a Plant Pathogenic Genus Originating in the Miocene. PMID:34289036
Complete chloroplast genome sequence of Acacia crassicarpa (Fabaceae). PMID:34286089
The complete chloroplast genome sequence of Smilax microphylla C. H. Wright. PMID:34286086
The complete chloroplast genome of Glaux maritima, a monotypic species. PMID:34286080
Complete chloroplast genome sequence of Adenostemma lavenia (Asteraceae) and phylogenetic analysis with related species. PMID:34286079
Performance and scaling behavior of bioinformatic applications in virtualization environments to create awareness for the efficient use of compute resources. PMID:34283824
Ribosome heterogeneity in Drosophila melanogaster gonads through paralog-switching. PMID:34283226
An actin-related protein that is most highly expressed in Drosophila testes is critical for embryonic development. PMID:34282725
Gene duplications and phylogenomic conflict underlie major pulses of phenotypic evolution in gymnosperms. PMID:34282286
Comparative and phylogenetic analyses of the chloroplast genomes of species of Paeoniaceae. PMID:34282194
Accurate prediction of protein structures and interactions using a three-track neural network. PMID:34282049
Comparative and functional genomics of the ABC transporter superfamily across arthropods. PMID:34281528
The Interspecific Fungal Hybrid Verticillium longisporum Displays Subgenome-Specific Gene Expression. PMID:34281400
Comparative Mitogenomic Analysis Reveals Gene and Intron Dynamics in Rubiaceae and Intra-Specific Diversification in Damnacanthus indicus. PMID:34281291
Broad sarbecovirus neutralization by a human monoclonal antibody. PMID:34280951
Evolution, systematics and historical biogeography of sand flies of the subgenus Paraphlebotomus (Diptera, Psychodidae, Phlebotomus) inferred using restriction-site associated DNA markers. PMID:34280193
Highly contiguous assemblies of 101 drosophilid genomes. PMID:34279216
DNA barcoding reveals different cestode helminth species in northern European marine and freshwater ringed seals. PMID:34277335
Draft Genome Assembly and Transcriptome Dataset for European Turnip (Brassica rapa L. ssp. rapifera), ECD4 Carrying Clubroot Resistance. PMID:34276765
The Conservation of Chloroplast Genome Structure and Improved Resolution of Infrafamilial Relationships of Crassulaceae. PMID:34276716
Comparative Analysis of Host-Associated Variation in Phytophthora cactorum. PMID:34276614
Large Differences in the Haptophyte Phaeocystis globosa Mitochondrial Genomes Driven by Repeat Amplifications. PMID:34276607
Genomic Analysis of Sarcomyxa edulis Reveals the Basis of Its Medicinal Properties and Evolutionary Relationships. PMID:34276589
Identification of a novel filovirus in a common lancehead (Bothrops atrox (Linnaeus, 1758)). PMID:34275961
Taxonomy and phylogeny of Resinicium sensu lato from Asia-Pacific revealing a new genus and five new species (Hymenochaetales, Basidiomycota). PMID:34275495
Nemertean, Brachiopod, and Phoronid Neuropeptidomics Reveals Ancestral Spiralian Signaling Systems. PMID:34272863
Comparing Ultraconserved Elements and Exons for Phylogenomic Analyses of Middle American Cichlids: When Data Agree to Disagree. PMID:34272856
Emerging mutation in SARS-CoV-2 spike: Widening distribution over time in different geographic areas. PMID:34271250
The Stability Landscape of de novo TIM Barrels Explored by a Modular Design Approach. PMID:34271011
The complete chloroplast genome and phylogenetic analysis of Ocimum kilimandscharicum Gurke (Camphor Basil) from India. PMID:34269773
Transmission event of SARS-CoV-2 Delta variant reveals multiple vaccine breakthrough infections. PMID:34268529
Unlimited Cooperativity of Betatectivirus SSB, a Novel DNA Binding Protein Related to an Atypical Group of SSBs From Protein-Primed Replicating Bacterial Viruses. PMID:34267740
Multigene phylogeny and taxonomic revision of American shrimps of the genus Cryphiops Dana, 1852 (Decapoda, Palaemonidae) implies a proposal for reversal of precedence with Macrobrachium Spence Bate, 1868. PMID:34267596
Plastome evolution and organisation in the Hoya group (Apocynaceae). PMID:34267257
A comprehensive annotation dataset of intact LTR retrotransposons of 300 plant genomes. PMID:34267227
Coding-Complete Genome Sequences of 11 SARS-CoV-2 B.1.1.7 and B.1.351 Variants from Metro Manila, Philippines. PMID:34264104
Complete Genome Sequence of Streptococcus oralis SF100, Isolated from Blood Cultures from a Patient with Infective Endocarditis. PMID:34264098
The complete chloroplast genome of Ocimum tenuiflorum L. subtype Rama Tulsi and its phylogenetic analysis. PMID:34263053
Complete mitochondrial genome of the giant root-rat (Tachyoryctes macrocephalus). PMID:34263047
The complete chloroplast genome of Epilobium hirsutum L. (Onagraceae). PMID:34263043
Characterization of the complete chloroplast genome of Dracocephalum heterophyllum (Lamiaceae). PMID:34263041
The complete chloroplast genome sequence of China Lindera praecox (Lauraceae) and intra-species diversity. PMID:34263040
The complete chloroplast genome of Wurfbainia neoaurantiaca (Zingiberaceae: Zingiberea) from Yunnan Province, China. PMID:34263033
Transcriptome Analysis of Chloris virgata, Which Shows the Fastest Germination and Growth in the Major Mongolian Grassland Plant. PMID:34262584
cGAS-like receptors sense RNA and control 3'2'-cGAMP signalling in Drosophila. PMID:34261127
SARS-CoV-2 RBD antibodies that maximize breadth and resistance to escape. PMID:34261126
Comparison of sand fly trapping approaches for vector surveillance of Leishmania and Bartonella species in ecologically distinct, endemic regions of Peru. PMID:34260585
Phylogenetic and evolutionary analysis of foot-and-mouth disease virus A/ASIA/Sea-97 lineage. PMID:34260046
Remarkable recent changes in the genetic diversity of the avirulence gene AvrStb6 in global populations of the wheat pathogen Zymoseptoria tritici. PMID:34258838
Genome-scale sequencing and analysis of human, wolf, and bison DNA from 25,000-year-old sediment. PMID:34256019
Parallel evolution of trehalose production machinery in anhydrobiotic animals via recurrent gene loss and horizontal transfer. PMID:34255978
A duplicated amh is the master sex-determining gene for Sebastes rockfish in the Northwest Pacific. PMID:34255977
RqcH and RqcP catalyze processive poly-alanine synthesis in a reconstituted ribosome-associated quality control system. PMID:34255840
Genomic Signatures Supporting the Symbiosis and Formation of Chitinous Tube in the Deep-Sea Tubeworm Paraescarpia echinospica. PMID:34255082
The Evolutionary Origins of Extreme Halophilic Archaeal Lineages. PMID:34255041
Reconstructing Dipsacales phylogeny using Angiosperms353: issues and insights. PMID:34254290
The Evolutionary Fate of Mitochondrial Aminoacyl-tRNA Synthetases in Amitochondrial Organisms. PMID:34254168
Ancient Gene Capture and Recent Gene Loss Shape the Evolution of Orthopoxvirus-Host Interaction Genes. PMID:34253028
Build a better bootstrap and the RAWR shall beat a random path to your door: phylogenetic support estimation revisited. PMID:34252944
Molecular fossils illuminate the evolution of retroviruses following a macroevolutionary transition from land to water. PMID:34252162
Viromics unveils extraordinary genetic diversity of the family Closteroviridae in wild citrus. PMID:34252150
Essential gene acquisition destabilizes plasmid inheritance. PMID:34252089
Repeated evolution of circadian clock dysregulation in cavefish populations. PMID:34252077
Target enrichment improves phylogenetic resolution in the genus Zanthoxylum (Rutaceae) and indicates both incomplete lineage sorting and hybridization events. PMID:34250543
The complete chloroplast genome of Aconitum scaposum. PMID:34250240
Characterization of the complete chloroplast genome sequence of Daphne retusa Hemsl. (Thymelaeaceae), a rare alpine plant species in northwestern China. PMID:34250238
The complete chloroplast genome sequence of Bambusa contracta L.C.Chia & H.L.Fung (Bambusodae). PMID:34250236
The complete chloroplast genome sequence of Pennisetum centrasiaticum, a widespread grass in Tibet, China. PMID:34250231
UDP-N-Acetylglucosamine Pyrophosphorylase 2 (UAP2) and 1 (UAP1) Perform Synergetic Functions for Leaf Survival in Rice. PMID:34249055
Viral transmission and evolution dynamics of SARS-CoV-2 in shipboard quarantine. PMID:34248221
Cattle connection: molecular epidemiology of BVDV outbreaks via rapid nanopore whole-genome sequencing of clinical samples. PMID:34247601
A Eukaryote-Wide Perspective on the Diversity and Evolution of the ARF GTPase Protein Family. PMID:34247240
LDIP cooperates with SEIPIN and LDAP to facilitate lipid droplet biogenesis in Arabidopsis. PMID:34244767
Structural basis of LAIR1 targeting by polymorphic Plasmodium RIFINs. PMID:34244481
Genomic monitoring unveil the early detection of the SARS-CoV-2 B.1.351 (beta) variant (20H/501Y.V2) in Brazil. PMID:34241897
Rhodococcus comparative genomics reveals a phylogenomic-dependent non-ribosomal peptide synthetase distribution: insights into biosynthetic gene cluster connection to an orphan metabolite. PMID:34241590
Phylogeny and Comparative Analysis for the Plastid Genomes of Five Tulipa (Liliaceae). PMID:34239930
Molecular Evidence of Bartonella melophagi in Ticks in Border Areas of Xinjiang, China. PMID:34239911
Apple Ripening Is Controlled by a NAC Transcription Factor. PMID:34239539
Host Phylogeny and Diet Shape Gut Microbial Communities Within Bamboo-Feeding Insects. PMID:34239504
Chloroplast genome features of Moricandia arvensis (Brassicaceae), a C3-C4 intermediate photosynthetic species. PMID:34237086
Conversion of a High-Altitude Temperate Forest for Agriculture Reduced Alpha and Beta Diversity of the Soil Fungal Communities as Revealed by a Metabarcoding Analysis. PMID:34234759
Multigene Phylogeny and Morphology Reveal Three Novel Species and a Novel Record of Agaricus From Northern Thailand. PMID:34234751
Mapping mutations to the SARS-CoV-2 RBD that escape binding by different classes of antibodies. PMID:34234131
Human Adenovirus Type 4 Comprises Two Major Phylogroups with Distinct Replicative Fitness and Virulence Phenotypes. PMID:34232735
Combining genomic and epidemiological data to compare the transmissibility of SARS-CoV-2 lineages. PMID:34230938
Sequencing SARS-CoV-2 Genomes from Saliva. PMID:34230934
Metagenomic analysis of a throat swab sample collected in China on a patient infected with Varicella Zoster Virus. PMID:34230529
A phylogeny-aware approach reveals unexpected venom components in divergent lineages of cone snails. PMID:34229491
Interplay between the cell envelope and mobile genetic elements shapes gene flow in populations of the nosocomial pathogen Klebsiella pneumoniae. PMID:34228700
Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding. PMID:34226565
Plant super-barcode: a case study on genome-based identification for closely related species of Fritillaria. PMID:34225754
A mitochondrial cytidine deaminase is responsible for C to U editing of tRNATrp to decode the UGA codon in Trypanosoma brucei. PMID:34224320
The Caenorhabditis elegans and Haemonchus contortus beta-tubulin genes cannot substitute for loss of the Saccharomyces cerevisiae beta-tubulin gene. PMID:34222836
Characterization of the complete chloroplast genome of mangrove Bruguiera gymnorrhiza (L.) Lam. ex Savigny. PMID:34222660
Characterization of the complete chloroplast genome of mangrove Rhizophora apiculata Blume (Rhizophoraceae). PMID:34222659
Comparison of Hyaluronic Acid Biosynthetic Genes From Different Strains of Pasteurella multocida. PMID:34220200
An updated infra-familial classification of Sapindaceae based on targeted enrichment data. PMID:34219219
Female-specific genomic regions and molecular sex identification of the clearhead icefish (Protosalanx hyalocranius). PMID:34215185
Characterization of a novel transitional group Rickettsia species (Rickettsia tillamookensis sp. nov.) from the western black-legged tick, Ixodes pacificus. PMID:34214027
Genome sequences and in silico effector mining of Corynespora cassiicola CC_29 and Corynespora olivacea CBS 114450. PMID:34213598
Complete mitogenome of Phthorimaea operculella (Lepidoptera: Gelechioidea: Gelechiidae). PMID:34212106
The complete chloroplast genome of Alsophila latebrosa, a common and widespread tree fern (Cyatheaceae). PMID:34212105
The complete chloroplast genome sequence of Catalpa fargesii (Bignoniaceae), a species endemic to China. PMID:34212103
A complete chloroplast genome of Keteleeria davidiana (Pinaceae) and its phylogenetic implications. PMID:34212102
Complete mitochondrial genome sequencing of Lutra lutra (Linnaeus, 1758) (Carnivora: Mustelidae) and its phylogenetic status in Mustelidae. PMID:34212100
The complete mitochondrial genome of Osmanthus fragrans (Lamiales, Oleaceae) from China. PMID:34212096
The complete chloroplast genome sequence of Bambusa lapidea (Bambusodae). PMID:34212092
The complete chloroplast genome of Lithocarpus hancei (Benth.) Rehd (Fagaceae) from Zhejiang, China. PMID:34212084
Characterization of the complete plastid genome of Gaultheria griffithiana (Ericaceae). PMID:34212078
A Comparative Analyses of the Complete Mitochondrial Genomes of Fungal Endosymbionts in Sogatella furcifera, White-Backed Planthoppers. PMID:34212028
Dual infection and recombination of Kaposi sarcoma herpesvirus revealed by whole-genome sequence analysis of effusion samples. PMID:34211736
Concurrent mutations in RNA-dependent RNA polymerase and spike protein emerged as the epidemiologically most successful SARS-CoV-2 variant. PMID:34210996
Fluid flow-induced left-right asymmetric decay of Dand5 mRNA in the mouse embryo requires a Bicc1-Ccr4 RNA degradation complex. PMID:34210974
New Insight into Taxonomy of European Mountain Pines, Pinus mugo Complex, Based on Complete Chloroplast Genomes Sequencing. PMID:34209970
Mutation Profiles, Glycosylation Site Distribution and Codon Usage Bias of Human Papillomavirus Type 16. PMID:34209097
Intestinal Parasites of Neotropical Wild Jaguars, Pumas, Ocelots, and Jaguarundis in Colombia: Old Friends Brought Back from Oblivion and New Insights. PMID:34209062
Five Mitochondrial Genomes of the Genus Eysarcoris Hahn, 1834 with Phylogenetic Implications for the Pentatominae (Hemiptera: Pentatomidae). PMID:34209052
Low Genetic Diversity of Hepatitis B Virus Surface Gene amongst Australian Blood Donors. PMID:34208852
Emergence of a Novel Dengue Virus 3 (DENV-3) Genotype-I Coincident with Increased DENV-3 Cases in Yangon, Myanmar between 2017 and 2019. PMID:34208667
An Antigenic Thrift-Based Approach to Influenza Vaccine Design. PMID:34208489
Rad52 Oligomeric N-Terminal Domain Stabilizes Rad51 Nucleoprotein Filaments and Contributes to Their Protection against Srs2. PMID:34207997
Trypanosoma rangeli Genetic, Mammalian Hosts, and Geographical Diversity from Five Brazilian Biomes. PMID:34207936
Fatal Neonatal Sepsis Associated with Human Adenovirus Type 56 Infection: Genomic Analysis of Three Recent Cases Detected in the United States. PMID:34207791
A Comprehensive Molecular Epidemiological Analysis of SARS-CoV-2 Infection in Cyprus from April 2020 to January 2021: Evidence of a Highly Polyphyletic and Evolving Epidemic. PMID:34207490
Comprehensive Evolutionary Analysis of Complete Epstein-Barr Virus Genomes from Argentina and Other Geographies. PMID:34207433
Molecular Evolution of Phototransduction Pathway Genes in Nocturnal and Diurnal Fireflies (Coleoptera: Lampyridae). PMID:34207188
Morphological and Molecular Characterization of Five Species Including Three New Species of Golden Gorgonians (Cnidaria: Octocorallia) from Seamounts in the Western Pacific. PMID:34206888
Phylogenetic Diversity of Lhr Proteins and Biochemical Activities of the Thermococcales aLhr2 DNA/RNA Helicase. PMID:34206878
Multi-Subunit SARS-CoV-2 Vaccine Design Using Evolutionarily Conserved T- and B- Cell Epitopes. PMID:34206865
Molecular Survey and Genetic Diversity of Bartonella spp. in Small Indian Mongooses (Urva auropunctata) and Their Fleas on Saint Kitts, West Indies. PMID:34206636
Retrospective Characterization of the 2006-2007 Swine Vesicular Disease Epidemic in Northern Italy by Whole Genome Sequence Analysis. PMID:34206208
Sow Contact Is a Major Driver in the Development of the Nasal Microbiota of Piglets. PMID:34205187
Comparative Molecular Characterization of Novel and Known Piscine Toti-Like Viruses. PMID:34205093
The Usefulness of a Duplex RT-qPCR during the Recent Yellow Fever Brazilian Epidemic: Surveillance of Vaccine Adverse Events, Epizootics and Vectors. PMID:34204910
Overview of the Genetic Diversity of African Macrotermes (Termitidae: Macrotermitinae) and Implications for Taxonomy, Ecology and Food Science. PMID:34204854
Towards a Natural Classification of Hyphodontia Sensu Lato and the Trait Evolution of Basidiocarps within Hymenochaetales (Basidiomycota). PMID:34204800
Comparative Analysis of Chloroplast Genomes of Four Medicinal Capparaceae Species: Genome Structures, Phylogenetic Relationships and Adaptive Evolution. PMID:34204211
Detection of Alpha- and Betacoronaviruses in Miniopterus fuliginosus and Rousettus leschenaultii, two species of Sri Lankan Bats. PMID:34203592
Impact of Glucosamine Supplementation on Gut Health. PMID:34202877
Mitogenomes Reveal Two Major Influxes of Papuan Ancestry across Wallacea Following the Last Glacial Maximum and Austronesian Contact. PMID:34202821
On the Origin of Tetraploid Vernal Grasses (Anthoxanthum) in Europe. PMID:34202779
Using RNA-Sequencing Data to Examine Tissue-Specific Garlic Microbiomes. PMID:34202675
Ligands of Adrenergic Receptors: A Structural Point of View. PMID:34202543
Exploring Codon Adjustment Strategies towards Escherichia coli-Based Production of Viral Proteins Encoded by HTH1, a Novel Prophage of the Marine Bacterium Hypnocyclicus thermotrophus. PMID:34201869
Keratinases Produced by Aspergillus stelliformis, Aspergillus sydowii, and Fusarium brachygibbosum Isolated from Human Hair: Yield and Activity. PMID:34200943
Comparative Genomics of Eight Fusarium graminearum Strains with Contrasting Aggressiveness Reveals an Expanded Open Pangenome and Extended Effector Content Signatures. PMID:34200775
Replication Kinetics of B.1.351 and B.1.1.7 SARS-CoV-2 Variants of Concern Including Assessment of a B.1.1.7 Mutant Carrying a Defective ORF7a Gene. PMID:34200386
Accumulation Dynamics of Transcripts and Proteins of Cold-Responsive Genes in Fragaria vesca Genotypes of Differing Cold Tolerance. PMID:34200124
Endosymbiont Capture, a Repeated Process of Endosymbiont Transfer with Replacement in Trypanosomatids Angomonas spp. PMID:34200026
An Investigation into the Potential of Targeting Escherichia coli rne mRNA with Locked Nucleic Acid (LNA) Gapmers as an Antibacterial Strategy. PMID:34200016
Transcriptome-Wide Identification and Quantification of Caffeoylquinic Acid Biosynthesis Pathway and Prediction of Its Putative BAHDs Gene Complex in A. spathulifolius. PMID:34199260
Phylogenetic Structure and Sequential Dominance of Sub-Lineages of PRRSV Type-2 Lineage 1 in the United States. PMID:34198904
TRAPID 2.0: a web application for taxonomic and functional analysis of de novo transcriptomes. PMID:34197621
Complete Genome Sequence of African Swine Fever Virus Isolated from a Domestic Pig in Timor-Leste, 2019. PMID:34197195
Direct Molecular Evidence for an Ancient, Conserved Developmental Toolkit Controlling Posttranscriptional Gene Regulation in Land Plants. PMID:34196710
Plastome and phylogenetic relationship of the woody buckwheat Fagopyrum tibeticum in the Qinghai-Tibet Plateau. PMID:34195504
Evaluation of the Effects of Different Bacteroides vulgatus Strains against DSS-Induced Colitis. PMID:34195297
Rapid Evolution of Autosomal Binding Sites of the Dosage Compensation Complex in Drosophila melanogaster and Its Association With Transcription Divergence. PMID:34194473
Massive Survey on Bacterial-Bacteriophages Biodiversity and Quality of Natural Whey Starter Cultures in Trentingrana Cheese Production. PMID:34194413
Host Susceptibility Modulates Escovopsis Pathogenic Potential in the Fungiculture of Higher Attine Ants. PMID:34194409
Mitochondrial genomes of two Polydora (Spionidae) species provide further evidence that mitochondrial architecture in the Sedentaria (Annelida) is not conserved. PMID:34193932
Complete plastomes of six species of Wikstroemia (Thymelaeaceae) reveal paraphyly with the monotypic genus Stellera. PMID:34193929
Gene-rich UV sex chromosomes harbor conserved regulators of sexual development. PMID:34193417
Independent pseudogenizations and losses of sox15 during amniote diversification following asymmetric ohnolog evolution. PMID:34193037
Monitoring Insect Transposable Elements in Large Double-Stranded DNA Viruses Reveals Host-to-Virus and Virus-to-Virus Transposition. PMID:34191026
Molecular Epidemiology of SARS-CoV-2 in Greece Reveals Low Rates of Onward Virus Transmission after Lifting of Travel Restrictions Based on Risk Assessment during Summer 2020. PMID:34190583
Genome reduction and relaxed selection is associated with the transition to symbiosis in the basidiomycete genus Podaxis. PMID:34189441
The complete chloroplast genome sequence of Veratrum oxysepalum and phylogenetic analysis. PMID:34189269
Complete plastid genome of Cumathamnion serrulatum (Ceramiales, Rhodophyta). PMID:34189267
The complete chloroplast genome of Semenovia thomsonii (Tordylieae: Apiaceae), a new record from Xizang, China. PMID:34189265
Complete mitochondrial genomes of three skippers in the tribe Aeromachini (Lepidoptera: Hesperiidae: Hesperiinae) and their phylogenetic implications. PMID:34188893
Comparative plastome analysis of Blumea, with implications for genome evolution and phylogeny of Asteroideae. PMID:34188853
The complete mitogenome of Phymorhynchus sp. (Neogastropoda, Conoidea, Raphitomidae) provides insights into the deep-sea adaptive evolution of Conoidea. PMID:34188831
Evolution, correlation, structural impact and dynamics of emerging SARS-CoV-2 variants. PMID:34188776
The bacterial microbiome and metabolome in caries progression and arrest. PMID:34188775
Cell-specific expression and individual function of prohormone convertase PC1/3 in Tribolium larval growth highlights major evolutionary changes between beetle and fly neuroendocrine systems. PMID:34187565
Genome-wide identification and expression analysis of Raffinose synthetase family in cotton. PMID:34187353
The report of anthocyanins in the betalain-pigmented genus Hylocereus is not well evidenced and is not a strong basis to refute the mutual exclusion paradigm. PMID:34187352
New Simian Enterovirus 19 (EV-A122) Strains in China Reveal Large-Scale Inter-Serotype Recombination between Simian EV-As. PMID:34185267
Mosaic Ends Tagmentation (METa) Assembly for Highly Efficient Construction of Functional Metagenomic Libraries. PMID:34184912
A preliminary phylogeny and review of the genus Tasmanitachoides, with descriptions of two new species (Coleoptera, Carabidae, Bembidarenini). PMID:34183876
CrvA and CrvB form a curvature-inducing module sufficient to induce cell-shape complexity in Gram-negative bacteria. PMID:34183815
Allelic diversification after transposable element exaptation promoted gsdf as the master sex determining gene of sablefish. PMID:34183453
Connecting structure and function from organisms to molecules in small-animal symbioses through chemo-histo-tomography. PMID:34183413
Identification and phylogenetic analysis of five Crataegus species (Rosaceae) based on complete chloroplast genomes. PMID:34180013
Integrative taxonomy of Xiphinema histriae and Xiphinema lapidosum from Spain. PMID:34179815
Description of Ektaphelenchus koreanus n. sp. (Nematoda: Ektaphelenchidae) with morphometrical notes on the Ektaphelenchus species. PMID:34179795
The complete chloroplast genome and phylogenetic analysis of Saussurea wettsteiniana (Compositae). PMID:34179496
The complete chloroplast genome of Androsace erecta (Primulaceae) and its phylogenetic implication. PMID:34179490
The complete chloroplast genome of Verbena officinalis, an herbal species of Verbenaceae family. PMID:34179488
Characterization and phylogenetic analysis of the complete chloroplast genome of Ophiorrhiza pumila (Rubiaceae). PMID:34179485
The complete chloroplast genome sequence of new species candidate of Plantago depressa Willd. in Korea (Plantaginaceae). PMID:34179481
The complete chloroplast genome of Chrysanthemum zawadskii Herbich (Asteraceae) isolated in Korea. PMID:34179479
Characterization of the complete chloroplast genome of Clerodendrum bungei Steud. (Lamiaceae). PMID:34179474
Complete chloroplast genome sequence of a Dutch cultivar of Chrysanthemum, Chrysanthemum morifolium 'Orizaba' (Asteraceae). PMID:34179473
The complete chloroplast genome sequence of Casearia glomerata Roxb. (Malpighiales; Salicaceae) from Fujian, China. PMID:34179472
Complete chloroplast genome of a semi-mangrove plant Hibiscus tiliaceus (Malvaceae). PMID:34179470
The complete chloroplast genome of the desert shrub Nitraria sphaerocarpa (Nitrariaceae) and phylogenetic analysis. PMID:34179469
Genomic consequences of human-mediated translocations in margin populations of an endangered amphibian. PMID:34178108
Global Analysis of UDP Glucose Pyrophosphorylase (UDPGP) Gene Family in Plants: Conserved Evolution Involved in Cell Death. PMID:34177996
Heterogeneous Streptomycin Resistance Level Among Mycobacterium tuberculosis Strains From the Same Transmission Cluster. PMID:34177837
Database mining of plant peptide homologues. PMID:34177333
Homatula guanheensis sp. nov. (Teleostei: Nemacheilidae), a new species of loach from Henan Province, China. PMID:34177310
Distribution and phasing of sequence motifs that facilitate CRISPR adaptation. PMID:34174210
Comparative insights into genome signatures of ferric iron oxide- and anode-stimulated Desulfuromonas spp. strains. PMID:34171987
SARS-CoV-2 spike L452R variant evades cellular immunity and increases infectivity. PMID:34171266
Comparative analyses of Mikania (Asteraceae: Eupatorieae) plastomes and impact of data partitioning and inference methods on phylogenetic relationships. PMID:34168241
Transmitting silks of maize have a complex and dynamic microbiome. PMID:34168223
Subtypes, resistance and virulence platforms in extended-drug resistant Acinetobacter baumannii Romanian isolates. PMID:34168184
The architecture of the SARS-CoV-2 RNA genome inside virion. PMID:34168138
Molecular insight into the genomic variation of SARS-CoV-2 strains from current outbreak. PMID:34166886
Recurrent emergence of SARS-CoV-2 spike deletion H69/V70 and its role in the Alpha variant B.1.1.7. PMID:34166617
Bacterial Vipp1 and PspA are members of the ancient ESCRT-III membrane-remodeling superfamily. PMID:34166615
Midgut transcriptome assessment of the cockroach-hunting wasp Ampulex compressa (Apoidea: Ampulicidae). PMID:34166422
Evolutionary responses to codon usage of horizontally transferred genes in Pseudomonas aeruginosa: gene retention, amelioration and compensatory evolution. PMID:34165421
Next-Generation Sequencing for Whole-Genome Characterization of Weissella cibaria UTNGt21O Strain Originated From Wild Solanum quitoense Lam. Fruits: An Atlas of Metabolites With Biotechnological Significance. PMID:34163450
Two new rare species of Candolleomyces with pale spores from China. PMID:34163303
Three new Melanoleuca species (Agaricales, Basidiomycota) from north-eastern China, supported by morphological and molecular data. PMID:34163302
Molecular and morphological systematics of a new, reef forming, cupped oyster from the northern Arabian Gulf: Talonostrea salpinx new species. PMID:34163292
Emergence and spread of a SARS-CoV-2 lineage A variant (A.23.1) with altered spike protein in Uganda. PMID:34163035
Natural variants in SARS-CoV-2 Spike protein pinpoint structural and functional hotspots with implications for prophylaxis and therapeutic strategies. PMID:34162970
Genome-wide association study of signature genetic alterations among pseudomonas aeruginosa cystic fibrosis isolates. PMID:34161396
Stepwise evolution and exceptional conservation of ORF1a/b overlap in coronaviruses. PMID:34159333
Growth faltering regardless of chronic diarrhea is associated with mucosal immune dysfunction and microbial dysbiosis in the gut lumen. PMID:34158595
Heterotrophic euglenid Rhabdomonas costata resembles its phototrophic relatives in many aspects of molecular and cell biology. PMID:34158556
Molecular reassessment of diaporthalean fungi associated with strawberry, including the leaf blight fungus, Paraphomopsis obscurans gen. et comb. nov. (Melanconiellaceae). PMID:34158123
Genome-wide characterization of LTR retrotransposons in the non-model deep-sea annelid Lamellibrachia luymesi. PMID:34157969
Effects of dicopper oxide and copper sulfate on growth performance and gut microbiota in broilers. PMID:34157560
Genomic epidemiology of the first epidemic wave of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) in Palestine. PMID:34156923
Viromes in marine ecosystems reveal remarkable invertebrate RNA virus diversity. PMID:34156600
High-throughput detection of eukaryotic parasites and arboviruses in mosquitoes. PMID:34156069
A standardized archaeal taxonomy for the Genome Taxonomy Database. PMID:34155373
Niche adaptation promoted the evolutionary diversification of tiny ocean predators. PMID:34155140
Linking a Gene Cluster to Atranorin, a Major Cortical Substance of Lichens, through Genetic Dereplication and Heterologous Expression. PMID:34154413
Morphological and molecular characterization of a novel Myxobolus species from the gastrointestinal tract of brown trout (Salmo trutta) in Spain. PMID:34152468
Identification of a neural basis for cold acclimation in Drosophila larvae. PMID:34151240
First detection of a novel 'unknown host' flavivirus in a Malaysian rodent. PMID:34151174
Characterization and phylogenetic analysis of the complete chloroplast genome sequence of Pertya multiflora (Asteraceae), a rare and endangered wild plant species in China. PMID:34151020
The first complete mitochondrial genome of Zoodes fulguratus (Gahan 1906) (Coleoptera: Cerambycidae: Cerambycinae) and its phylogeny. PMID:34151019
Complete chloroplast genome of medicinal plant Sabia parviflora Wall. ex Roxb. (Sabiaceae). PMID:34151017
The complete chloroplast genome sequence of Machilus robusta W. W. Smith (Lauraceae) from Jiangxi Province, China. PMID:34151010
The complete chloroplast genome of a Chinese medicinal plant, Peristrophe japonica (Thunb.) Bremek. (Lamiales: Acanthaceae) from Nanjing, China. PMID:34151009
The complete chloroplast genome of Hydrangea strigosa Rehder (Hydrangeaceae). PMID:34151007
The first complete chloroplast genome of Haymondia wallichii (Fabaceae) and its phylogenetic analysis. PMID:34151003
The Human Gut Phageome: Origins and Roles in the Human Gut Microbiome. PMID:34150671
Natural Genetic Diversity in Tomato Flavor Genes. PMID:34149747
Phylogenomic Analyses of Hepatica Species and Comparative Analyses Within Tribe Anemoneae (Ranunculaceae). PMID:34149746
Sequencing and Comparative Genomic Analysis of a Highly Metal-Tolerant Penicillium janthinellum P1 Provide Insights Into Its Metal Tolerance. PMID:34149650
Investigation of Plasmids Among Clinical Staphylococcus aureus and Staphylococcus haemolyticus Isolates From Egypt. PMID:34149648
Global variation in SARS-CoV-2 proteome and its implication in pre-lockdown emergence and dissemination of 5 dominant SARS-CoV-2 clades. PMID:34147651
Methanogenic archaea use a bacteria-like methyltransferase system to demethoxylate aromatic compounds. PMID:34145392
Mechanisms driving genome reduction of a novel Roseobacter lineage. PMID:34145391
Acinetobacter baylyi regulates type IV pilus synthesis by employing two extension motors and a motor protein inhibitor. PMID:34145281
Different rates of pollen and seed gene flow cause branch-length and geographic cytonuclear discordance within Asian butternuts. PMID:34143496
Identification and analysis of the biological activity of the new strain of Pseudoalteromonas piscicida isolated from the hemal fluid of the bivalve Modiolus kurilensis (F. R. Bernard, 1983). PMID:34142183
A refined genome phage display methodology delineates the human antibody response in patients with Chagas disease. PMID:34142048
Hyaloklossia Labbé, 1896 (Alveolata: Apicomplexa) in frogs: Description of a new species and proposing a new subfamily to accommodate these enigmatic parasites. PMID:34141567
Disease management in two sympatric Apterostigma fungus-growing ants for controlling the parasitic fungus Escovopsis. PMID:34141201
Fensomea setacea, gen. & sp. nov. (Cladopyxidaceae, Dinophyceae), is neither gonyaulacoid nor peridinioid as inferred from morphological and molecular data. PMID:34140573
In-depth single-cell analysis of translation-competent HIV-1 reservoirs identifies cellular sources of plasma viremia. PMID:34140517
A subterranean adaptive radiation of amphipods in Europe. PMID:34140494
Transmission Dynamics of Severe Acute Respiratory Syndrome Coronavirus 2 in High-Density Settings, Minnesota, USA, March-June 2020. PMID:34138695
Hearing Sensitivity of Primates: Recurrent and Episodic Positive Selection in Hair Cells and Stereocilia Protein-Coding Genes. PMID:34137817
Complete Mitochondrial Genome Sequence of the Magpie-Lark (Grallina cyanoleuca). PMID:34137635
The Hidden Diversity of Diatrypaceous Fungi in China. PMID:34135872
Socioeconomic position links circulatory microbiota differences with biological age. PMID:34135381
Recovery and analysis of ancient beetle DNA from subfossil packrat middens using high-throughput sequencing. PMID:34135378
Genetic diversity of vector-borne pathogens in spotted and brown hyenas from Namibia and Tanzania relates to ecological conditions rather than host taxonomy. PMID:34134753
Triple RNA-Seq characterizes aphid gene expression in response to infection with unequally virulent strains of the endosymbiont Hamiltonella defensa. PMID:34134631
Conservation of a DNA Replication Motif among Phylogenetically Distant Budding Yeast Species. PMID:34132803
Cyanochelins, an Overlooked Class of Widely Distributed Cyanobacterial Siderophores, Discovered by Silent Gene Cluster Awakening. PMID:34132591
How water-soluble saccharides drive the metabolism of lactic acid bacteria during fermentation of brewers' spent grain. PMID:34132488
A new genus and four new species in the /Psathyrella s.l. clade from China. PMID:34131386
Phocaeicola faecalis sp. nov., a strictly anaerobic bacterial strain adapted to the human gut ecosystem. PMID:34129122
Gene Conversion Facilitates the Adaptive Evolution of Self-Resistance in Highly Toxic Newts. PMID:34129031
Independent duplications of the Golgi phosphoprotein 3 oncogene in birds. PMID:34127736
SARS-CoV-2 infection and transmission in the North American deer mouse. PMID:34127676
Binding of single-mutant epidermal growth factor (EGF) ligands alters the stability of the EGF receptor dimer and promotes growth signaling. PMID:34126069
Redefining genera of cereal pathogens: Oculimacula, Rhynchosporium and Spermospora. PMID:34124618
Pseudocercospora and allied genera associated with leaf spots of banana (Musa spp.). PMID:34124615
Complete mitochondrial genome of the Pacific limpet Cellana nigrolineata (Gastropoda: Patellogastropoda) determined by shotgun sequencing using the Illumina NGS platform. PMID:34124369
The complete chloroplast genome of Agave sisalana. PMID:34124368
The complete chloroplast genome sequence of Duranta erecta (Verbenaceae). PMID:34124359
The complete chloroplast genome and phylogenetic analysis of Syringa reticulata subsp. amurensis (Rupr.) P.S.Green & M.C.Chang from Qinghai Province, China. PMID:34124358
The complete chloroplast genome of Chimonobambusa hejiangensis. PMID:34124356
The complete chloroplast genome of a purple Ethiopian rape (Brassica carinata: Brassicaceae) from Guizhou Province, China and its phylogenetic analysis. PMID:34124355
Computational Analysis and Phylogenetic Clustering of SARS-CoV-2 Genomes. PMID:34124300
Lost and Found: Piwi and Argonaute Pathways in Flatworms. PMID:34123869
Integrative species delimitation based on COI, ITS, and morphological evidence illustrates a unique evolutionary history of the genus Paracercion (Odonata: Coenagrionidae). PMID:34123590
Molecular characterization and expression analysis of ribosomal L18/L5e gene in Pennisetum glaucum (L.) R. Br. PMID:34121902
First detection of highly pathogenic avian influenza virus in Norway. PMID:34118927
Multilocus phylogenies reveal three new truffle-like taxa and the traces of interspecific hybridization in Octaviania (Boletaceae, Boletales). PMID:34116729
Evolutionary and Ecological Drivers Shape the Emergence and Extinction of Foot-and-Mouth Disease Virus Lineages. PMID:34115138
The Impact of Intensive Fish Farming on Pond Sediment Microbiome and Antibiotic Resistance Gene Composition. PMID:34113676
A chromosome-level Camptotheca acuminata genome assembly provides insights into the evolutionary origin of camptothecin biosynthesis. PMID:34112794
18S rRNA variability maps reveal three highly divergent, conserved motifs within Rotifera. PMID:34112085
Dispersal strategies shape persistence and evolution of human gut bacteria. PMID:34111423
Markers of metabolic health and gut microbiome diversity: findings from two population-based cohort studies. PMID:34110438
rMAP: the Rapid Microbial Analysis Pipeline for ESKAPE bacterial group whole-genome sequence data. PMID:34110280
Effects of Mountain Uplift and Climatic Oscillations on Phylogeography and Species Divergence of Chamaesium (Apiaceae). PMID:34108984
vB_BcM_Sam46 and vB_BcM_Sam112, members of a new bacteriophage genus with unusual small terminase structure. PMID:34108535
Ecology of inorganic sulfur auxiliary metabolism in widespread bacteriophages. PMID:34108477
Whole-genome microsynteny-based phylogeny of angiosperms. PMID:34108452
The effect of recombination on the evolution of a population of Neisseria meningitidis. PMID:34108268
Fifty million years of beetle evolution along the Antarctic Polar Front. PMID:34108239
Chloroplast phylogenomics and divergence times of Lagerstroemia (Lythraceae). PMID:34107868
Genomic diversity of 39 samples of Pyropia species grown in Japan. PMID:34106965
Cyperus prophyllatus: An endangered aquatic new species of Cyperus L. (Cyperaceae) with a exceptional spikelet disarticulation pattern among about 950 species, including molecular phylogenetic, anatomical and (micro)morphological data. PMID:34106952
Genomic and Phenotypic Analysis of COVID-19-Associated Pulmonary Aspergillosis Isolates of Aspergillus fumigatus. PMID:34106569
Resolving species boundaries in a recent radiation with the Angiosperms353 probe set: the Lomatium packardiae/L. anomalum clade of the L. triternatum (Apiaceae) complex. PMID:34105148
Lower human defensin 5 in elderly people compared to middle-aged is associated with differences in the intestinal microbiota composition: the DOSANCO Health Study. PMID:34105106
Complete chloroplast genome sequence of Convolvulus arvensis. PMID:34104779
The complete mitochondrial genome of Tropidothorax sinensis (Reuter, 1888) (Hemiptera: Lygaeidae). PMID:34104778
The complete chloroplast genome sequence of Heteropolygonatum ginfushanicum (Asparagaceae) and phylogenetic analysis. PMID:34104777
Characterization of the complete chloroplast genome of Centranthera grandiflora Benth (Orobanchaceae), an important species of medicinal herb. PMID:34104774
The complete plastid genome of Thyrsostachys siamensis (Poaceae, Bambusoideae). PMID:34104773
The complete mitochondrial genome of Anneissia intermedia (Crinoidea: Comatulida: Comatulidae). PMID:34104771
Characterization of the complete chloroplast genome of Gymnocladus chinensis Baill. PMID:34104768
The complete chloroplast genome of Zanthoxylum bungeanum var. pubescens with distinct leaf shapes. PMID:34104767
The complete chloroplast genome sequence of Passiflora xishuangbannaensis (Passifloraceae), a vine endemic to Yunnan, China. PMID:34104766
The complete chloroplast genome of Abeliophyllum distichum f. lilacinum Nakai (Oleaceae) from the Chungbuk Province, Korea. PMID:34104762
The complete chloroplast genome of Tetrastigma planicaule, one important folk medicinal plant in China. PMID:34104758
Characterization of the complete chloroplast genome of the medicinal plant Orixa japonica (Rutaceae) in Zhejiang Province and its phylogenetic analysis within family Rutaceae. PMID:34104754
The complete chloroplast genome of Pluchea pteropoda Hemsl, a mangrove associate plant. PMID:34104753
Complete mitochondrial genome of Neotoxoptera formosana (Takahashi, 1921) (Hemiptera: Aphididae), with the phylogenetic analysis. PMID:34104746
The complete chloroplast genome sequence of Bambusa vulgaris cv. Wamin. PMID:34104745
The complete chloroplast genome of Walla Patta, Gyrinops walla (Thymelaeaceae), an agarwood-producing tree species from Sri Lanka. PMID:34104743
The complete mitochondrial genome of Agelasta perplexa Pascoe (Coleoptera: Cerambycidae). PMID:34104741
The complete chloroplast genome sequence of Dryobalanops aromatica. PMID:34104738
The complete mitochondrial genome of Scatoglyphus polytrematus (Acari: Acaridae). PMID:34104735
The complete chloroplast genome sequence of Trapa kozhevnikoviorum Pshenn. (Lythraceae). PMID:34104734
The complete chloroplast genome of Strobilanthes biocullata (Acanthaceae). PMID:34104730
The mitochondrial genomes of five spring and groundwater amphipods of the family Crangonyctidae (Crustacea: Amphipoda) from eastern North America. PMID:34104729
The complete plastome of Andreaea rupestris Hedw. (Andreaeaceae, Bryophyta). PMID:34104727
Characterization of the complete chloroplast genome of Dioscorea polystachya Turcz. PMID:34104726
Complete chloroplast genome sequences of Lagotis brevituba (Plantaginaceae): a famous Tibetan medicine plant. PMID:34104723
The complete chloroplast genome of Callicarpa siongsaiensis Metcalf (Lamiaceae) from Fujian Province, China: genome structure and phylogenetic analysis. PMID:34104722
Mining genome traits that determine the different gut colonization potential of Lactobacillus and Bifidobacterium species. PMID:34100697
Viral Metagenome-Based Precision Surveillance of Pig Population at Large Scale Reveals Viromic Signatures of Sample Types and Influence of Farming Management on Pig Virome. PMID:34100634
Genomic epidemiology and associated clinical outcomes of a SARS-CoV-2 outbreak in a general adult hospital in Quebec. PMID:34100030
The queen conch mitogenome: intra- and interspecific mitogenomic variability in Strombidae and phylogenetic considerations within the Hypsogastropoda. PMID:34099752
Cis-regulatory evolution spotlights species differences in the adaptive potential of gene expression plasticity. PMID:34099660
Identification and Enzymatic Analysis of an Archaeal ATP-Dependent Serine Kinase from the Hyperthermophilic Archaeon Staphylothermus marinus. PMID:34096778
Comparative Genomics of Peroxisome Biogenesis Proteins: Making Sense of the PEX Proteins. PMID:34095119
Genomic Epidemiology of SARS-CoV-2 From Mainland China With Newly Obtained Genomes From Henan Province. PMID:34093495
Azohydromonas caseinilytica sp. nov., a Nitrogen-Fixing Bacterium Isolated From Forest Soil by Using Optimized Culture Method. PMID:34093463
Divergence time and species delimitation of microbivalves in the Southern Ocean: the case of Kidderia species. PMID:34092908
H2-dependent formate production by hyperthermophilic Thermococcales: an alternative to sulfur reduction for reducing-equivalents disposal. PMID:34088977
SepF is the FtsZ anchor in archaea, with features of an ancestral cell division system. PMID:34088904
Detection of genotype-1 of dengue virus serotype 3 for the first time and complete genome analysis of dengue viruses during the 2018 epidemic in Mandalay, Upper Myanmar. PMID:34086703
G protein-coupled receptors as candidates for modulation and activation of the chemical senses in decapod crustaceans. PMID:34086685
Wolfberry genomes and the evolution of Lycium (Solanaceae). PMID:34083720
Dating Alphaproteobacteria evolution with eukaryotic fossils. PMID:34083540
Nuclear compartmentalization of TERT mRNA and TUG1 lncRNA is driven by intron retention. PMID:34083519
Positive Selection in Gene Regulatory Factors Suggests Adaptive Pleiotropic Changes During Human Evolution. PMID:34079582
Genome-Wide Analysis of the DUF4228 Family in Soybean and Functional Identification of GmDUF4228 -70 in Response to Drought and Salt Stresses. PMID:34079564
Cross-species gene enrichment revealed a single population of Hilsa shad (Tenualosa ilisha) with low genetic variation in Bangladesh waters. PMID:34078978
Structural and phylogenetic analyses of resistance to next-generation aminoglycosides conferred by AAC(2') enzymes. PMID:34078922
Gene count from target sequence capture places three whole genome duplication events in Hibiscus L. (Malvaceae). PMID:34078291
Systematics and phylogeography of the Brazilian Atlantic Forest endemic harvestmen Neosadocus Mello-Leitão, 1926 (Arachnida: Opiliones: Gonyleptidae). PMID:34077418
Intrinsic signal amplification by type III CRISPR-Cas systems provides a sequence-specific SARS-CoV-2 diagnostic. PMID:34075364
Evolution and function of the epithelial cell-specific ER stress sensor IRE1β. PMID:34075183
Identification of CRF89_BF, a new member of an HIV-1 circulating BF intersubtype recombinant form family widely spread in South America. PMID:34075073
Copper binding by a unique family of metalloproteins is dependent on kynurenine formation. PMID:34074779
Biosynthesis of fosfomycin in pseudomonads reveals an unexpected enzymatic activity in the metallohydrolase superfamily. PMID:34074759
DyP-Type Peroxidases: Recent Advances and Perspectives. PMID:34074047
Multigene Phylogeny Reveals Haploanthostomella elaeidis gen. et sp. nov. and Familial Replacement of Endocalyx (Xylariales, Sordariomycetes, Ascomycota). PMID:34073589
Mitochondrial Phylogenomics of Tenthredinidae (Hymenoptera: Tenthredinoidea) Supports the Monophyly of Megabelesesinae as a Subfamily. PMID:34073280
Different Non-Structural Carbohydrates/Crude Proteins (NCS/CP) Ratios in Diet Shape the Gastrointestinal Microbiota of Water Buffalo. PMID:34073108
Morinagadepsin, a Depsipeptide from the Fungus Morinagamyces vermicularis gen. et comb. nov. PMID:34073017
Discovery and Characterization of Actively Replicating DNA and Retro-Transcribing Viruses in Lower Vertebrate Hosts Based on RNA Sequencing. PMID:34072878
The Evolution of Rag Gene Enhancers and Transcription Factor E and Id Proteins in the Adaptive Immune System. PMID:34072618
Development of a Tetraplex qPCR for the Molecular Identification and Quantification of Human Enteric Viruses, NoV and HAV, in Fish Samples. PMID:34071891
Characterization of Three Complete Mitogenomes of Flatidae (Hemiptera: Fulgoroidea) and Compositional Heterogeneity Analysis in the Planthoppers' Mitochondrial Phylogenomics. PMID:34070437
Propionate Fermentative Genes of the Gut Microbiome Decrease in Inflammatory Bowel Disease. PMID:34070019
Nationwide Study of Drug Resistance Mutations in HIV-1 Infected Individuals under Antiretroviral Therapy in Brazil. PMID:34069929
Pan-Resistome Insights into the Multidrug Resistance of Acinetobacter baumannii. PMID:34069870
Genome-Wide Analysis of nsLTP Gene Family and Identification of SiLTPs Contributing to High Oil Accumulation in Sesame (Sesamum indicum L.). PMID:34069840
Global Genomic Analysis of SARS-CoV-2 RNA Dependent RNA Polymerase Evolution and Antiviral Drug Resistance. PMID:34069681
Multi-Gene Phylogeny and Morphology Reveal Haplohelminthosporium gen. nov. and Helminthosporiella gen. nov. Associated with Palms in Thailand and A Checklist for Helminthosporium Reported Worldwide. PMID:34069619
Molecular Characterization of 4/91 Infectious Bronchitis Virus Leading to Studies of Pathogenesis and Host Responses in Laying Hens. PMID:34069486
SARS-CoV-2 Infections and Viral Isolations among Serially Tested Cats and Dogs in Households with Infected Owners in Texas, USA. PMID:34069453
HERV-K(HML7) Integrations in the Human Genome: Comprehensive Characterization and Comparative Analysis in Non-Human Primates. PMID:34069102
Diversity of Plasmids and Genes Encoding Resistance to Extended-Spectrum β-Lactamase in Escherichia coli from Different Animal Sources. PMID:34068339
Fatty Acid Desaturases: Uncovering Their Involvement in Grapevine Defence against Downy Mildew. PMID:34067363
Ornithobacterium rhinotracheale: MALDI-TOF MS and Whole Genome Sequencing Confirm That Serotypes K, L and M Deviate from Well-Known Reference Strains and Numerous Field Isolates. PMID:34067063
Coexistence of Three Dominant Bacterial Symbionts in a Social Aphid and Implications for Ecological Adaptation. PMID:34066350
Molecular Analysis of SARS-CoV-2 Circulating in Bangladesh during 2020 Revealed Lineage Diversity and Potential Mutations. PMID:34065789
Circovirus in Blood of a Febrile Horse with Hepatitis. PMID:34065502
Transcriptome Analysis Identifies a Gene Cluster for the Biosynthesis of Biruloquinone, a Rare Phenanthraquinone, in a Lichen-Forming Fungus Cladonia macilenta. PMID:34065383
Genomic Characterisation of a Novel Avipoxvirus Isolated from an Endangered Northern Royal Albatross (Diomedea sanfordi). PMID:34065100
Novel Clade 2.3.4.4b Highly Pathogenic Avian Influenza A H5N8 and H5N5 Viruses in Denmark, 2020. PMID:34065033
Mutation in a SARS-CoV-2 Haplotype from Sub-Antarctic Chile Reveals New Insights into the Spike's Dynamics. PMID:34064904
Co-Circulation of Bovine Leukemia Virus Haplotypes among Humans, Animals, and Food Products: New Insights of Its Zoonotic Potential. PMID:34064361
Comparative Analysis of Re-Annotated Genes Provides Insight into Evolutionary Divergence and Expressions of Aquaporin Family in Pepper. PMID:34064088
Unraveling a Lignocellulose-Decomposing Bacterial Consortium from Soil Associated with Dry Sugarcane Straw by Genomic-Centered Metagenomics. PMID:34063014
quickLD: An efficient software for linkage disequilibrium analyses. PMID:34062051
A Peek into the Plasmidome of Global Sewage. PMID:34061588
Homology and Modular Evolution of CATCHR at the Origin of the Eukaryotic Endomembrane System. PMID:34061181
Genome of the fatal tapeworm Sparganum proliferum uncovers mechanisms for cryptic life cycle and aberrant larval proliferation. PMID:34059788
The chromosome-level Stevia genome provides insights into steviol glycoside biosynthesis. PMID:34059662
A high-quality genome assembly of Morinda officinalis, a famous native southern herb in the Lingnan region of southern China. PMID:34059651
The genus Arthrinium (Ascomycota, Sordariomycetes, Apiosporaceae) from marine habitats from Korea, with eight new species. PMID:34059142
Polysaccharide utilization loci-driven enzyme discovery reveals BD-FAE: a bifunctional feruloyl and acetyl xylan esterase active on complex natural xylans. PMID:34059129
Phylogenetic evidence of HIV-1 transmission linkage between two men who have sex with men. PMID:34059082
Comparative analysis of de novo genomes reveals dynamic intra-species divergence of NLRs in pepper. PMID:34059006
Landscape of epitopes targeted by T cells in 852 individuals recovered from COVID-19: Meta-analysis, immunoprevalence, and web platform. PMID:34056627
OXA-484, an OXA-48-Type Carbapenem-Hydrolyzing Class D β-Lactamase From Escherichia coli. PMID:34054758
A Win-Loss Interaction on Fe0 Between Methanogens and Acetogens From a Climate Lake. PMID:34054747
Unbiased Characterization of the Microbiome and Virome of Questing Ticks. PMID:34054743
Characterization of Diaporthe species associated with peach constriction canker, with two novel species from China. PMID:34054325
A prescient evolutionary model for genesis, duplication and differentiation of MIR160 homologs in Brassicaceae. PMID:34052911
Motifier: An IgOme Profiler Based on Peptide Motifs Using Machine Learning. PMID:34052285
Comparative analysis of spatial-temporal patterns of human metapneumovirus and respiratory syncytial virus in Africa using genetic data, 2011-2014. PMID:34051792
The Assembled and Annotated Genome of the Fairy-Ring Fungus Marasmius oreades. PMID:34051082
Dynamic methylation of histone H3K18 in differentiating Theileria parasites. PMID:34050145
Plastome structure and phylogenetic relationships of Styracaceae (Ericales). PMID:34049486
Plastid NDH Pseudogenization and Gene Loss in a Recently Derived Lineage from the Largest Hemiparasitic Plant Genus Pedicularis (Orobanchaceae). PMID:34046678
E484K as an innovative phylogenetic event for viral evolution: Genomic analysis of the E484K spike mutation in SARS-CoV-2 lineages from Brazil. PMID:34044192
A new species of Chlamydia isolated from Siamese crocodiles (Crocodylus siamensis). PMID:34043689
The Genomic Signature of Allopatric Speciation in a Songbird Is Shaped by Genome Architecture (Aves: Certhia americana). PMID:34042960
Microbiome Aggregated Traits and Assembly Are More Sensitive to Soil Management than Diversity. PMID:34042469
TbVps41 regulates trafficking of endocytic but not biosynthetic cargo to lysosomes of bloodstream forms of Trypanosoma brucei. PMID:34041791
Differential disease severity and whole-genome sequence analysis for human influenza A/H1N1pdm virus in 2015-2016 influenza season. PMID:34040796
Identification of cis-regulatory motifs in first introns and the prediction of intron-mediated enhancement of gene expression in Arabidopsis thaliana. PMID:34039279
Genomic analysis of Neisseria elongata isolate from a patient with infective endocarditis. PMID:34038628
Genome-wide comparative analyses of GATA transcription factors among 19 Arabidopsis ecotype genomes: Intraspecific characteristics of GATA transcription factors. PMID:34038437
The genome of the venomous snail Lautoconus ventricosus sheds light on the origin of conotoxin diversity. PMID:34037232
Multi-gene phylogenetic evidence indicates that Pleurodesmospora belongs in Cordycipitaceae (Hypocreales, Hypocreomycetidae) and Pleurodesmospora lepidopterorum sp. nov. on pupa from China. PMID:34035655
Evidence from oyster suggests an ancient role for Pdx in regulating insulin gene expression in animals. PMID:34035261
SARS-CoV-2: Possible recombination and emergence of potentially more virulent strains. PMID:34033650
Longitudinal typing of molecular HIV clusters in a statewide epidemic. PMID:34033589
Two swimming modes in Trachymedusae; bell kinematics and the role of giant axons. PMID:34032271
CryoEM and AI reveal a structure of SARS-CoV-2 Nsp2, a multifunctional protein involved in key host processes. PMID:34031651
Ecology and molecular targets of hypermutation in the global microbiome. PMID:34031405
Re-examination of two diatom reference genomes using long-read sequencing. PMID:34030633
Genomic evidence of SARS-CoV-2 reinfection case with the emerging B.1.2 variant in Brazil. PMID:34029627
Characterization of the complete chloroplast genome of Toddalia asiatica (L.) Lam. PMID:34027082
The complete plastome of Polytrichum commune Hedw. (Polytrichaceae, Bryophyta). PMID:34027080
The complete chloroplast genome sequence of Rubus sachalinensis Lévl. PMID:34027073
Genetic diversity of avian leukosis virus subgroup J (ALV-J): toward a unified phylogenetic classification and nomenclature system. PMID:34026272
Viromics of extant insect orders unveil the evolution of the flavi-like superfamily. PMID:34026271
Raoultella terrigena: Current state of knowledge, after two recently identified clinical cases in Eastern Europe. PMID:34026135
The efficacy of DNA barcoding in the classification, genetic differentiation, and biodiversity assessment of benthic macroinvertebrates. PMID:34026038
Biogeography and Ecology of Magnaporthales: A Case Study. PMID:34025609
Organic Matter Type Defines the Composition of Active Microbial Communities Originating From Anoxic Baltic Sea Sediments. PMID:34025597
Bacillus pumilus Group Comparative Genomics: Toward Pangenome Features, Diversity, and Marine Environmental Adaptation. PMID:34025591
Yet Another Quick Assembly, Analysis and Trimming Tool (YAQAAT): A Server for the Automated Assembly and Analysis of Sanger Sequencing Data. PMID:34025220
Brahmaculus gen. nov. (Leotiomycetes, Chlorociboriaceae). PMID:34025144
Chayamaritia vietnamensis (Gesneriaceae), a new species from Son La Province, northern Vietnam. PMID:34025140
Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities. PMID:34021239
Complete mitochondrial genomes and phylogenetic relationships of the genera Nephila and Trichonephila (Araneae, Araneoidea). PMID:34021208
Longitudinal profiling of the burn patient cutaneous and gastrointestinal microbiota: a pilot study. PMID:34021204
Morphological convergence and adaptation in cave and pelagic scale worms (Polynoidae, Annelida). PMID:34021174
The ORF8 protein of SARS-CoV-2 mediates immune evasion through down-regulating MHC-Ι. PMID:34021074
Microbiome characterization of defensive tissues in the model anemone Exaiptasia diaphana. PMID:34020587
Prevalence and relationship of endosymbiotic Wolbachia in the butterfly genus Erebia. PMID:34020585
Identification and host response interaction study of SARS-CoV-2 encoded miRNA-like sequences: an in silico approach. PMID:34020131
Two high-quality de novo genomes from single ethanol-preserved specimens of tiny metazoans (Collembola). PMID:34018554
Sequence analysis of tyrosine recombinases allows annotation of mobile genetic elements in prokaryotic genomes. PMID:34018328
Metagenomic sequencing reveals a lack of virus exchange between native and invasive freshwater fish across the Murray-Darling Basin, Australia. PMID:34017611
Complete Genome Sequence of a SARS-CoV-2 Strain Sampled in Morocco in May 2020, Obtained Using Sanger Sequencing. PMID:34016683
Genome Sequences of Equine Herpesvirus 1 Strains from a European Outbreak of Neurological Disorders Linked to a Horse Gathering in Valencia, Spain, in 2021. PMID:34016681
Highly rearranged mitochondrial genome in Falcolipeurus lice (Phthiraptera: Philopteridae) from endangered eagles. PMID:34016171
Genomic epidemiology of SARS-CoV-2 in Esteio, Rio Grande do Sul, Brazil. PMID:34016042
A Chromosome-Level Genome Assembly of Ephestia elutella (Hübner, 1796) (Lepidoptera: Pyralidae). PMID:34014321
CryoEM and AI reveal a structure of SARS-CoV-2 Nsp2, a multifunctional protein involved in key host processes. PMID:34013269
Longitudinal immune profiling of a SARS-CoV-2 reinfection in a solid organ transplant recipient. PMID:34013255
Homogeneous Cytochrome 579 Is an Octamer That Reacts Too Slowly With Soluble Iron to Be the Initial Iron Oxidase in the Respiratory Chain of Leptospirillum ferriphilum. PMID:34012429
Analysis of diverse eukaryotes suggests the existence of an ancestral mitochondrial apparatus derived from the bacterial type II secretion system. PMID:34011950
Profile hidden Markov model sequence analysis can help remove putative pseudogenes from DNA barcoding and metabarcoding datasets. PMID:34011275
Coxiella burnetii and Related Tick Endosymbionts Evolved from Pathogenic Ancestors. PMID:34009306
Genomic evolution of the class Acidithiobacillia: deep-branching Proteobacteria living in extreme acidic conditions. PMID:34007059
Characterization of a novel type of carbonic anhydrase that acts without metal cofactors. PMID:34006275
Repurposing of synaptonemal complex proteins for kinetochores in Kinetoplastida. PMID:34006126
Phylogenetic analysis of classical swine fever virus isolates from China. PMID:34003359
Changes in Archaeal Community and Activity by the Invasion of Spartina anglica Along Soil Depth Profiles of a Coastal Wetland. PMID:34003315
Comparative Genomics Reveals Factors Associated with Phenotypic Expression of Wolbachia. PMID:34003269
A Chromosome-Level Assembly of Blunt Snout Bream (Megalobrama amblycephala) Genome Reveals an Expansion of Olfactory Receptor Genes in Freshwater Fish. PMID:34003267
A global resource for genomic predictions of antimicrobial resistance and surveillance of Salmonella Typhi at pathogenwatch. PMID:34001879
Single-cell genomics unveils a canonical origin of the diverse mitochondrial genomes of euglenozoans. PMID:34001130
Rapid protein sequence evolution via compensatory frameshift is widespread in RNA virus genomes. PMID:34000995
Structural landscape of the complete genomes of dengue virus serotypes and other viral hemorrhagic fevers. PMID:34000991
ProteoVision: web server for advanced visualization of ribosomal proteins. PMID:33999189
Characteristic and phylogenetic analyses of chloroplast genome for Syringa komarowii C.K.Schneid. (Oleaceae) from Huoditang, China, an important horticultural plant. PMID:33997285
Complete mitochondrial genome of Stenopsyche tienmushanensis (Trichoptera: Stenopsychidae). PMID:33997283
The full mitochondrial genome sequence of the greater argonaut Argonauta argo (Cephalopoda, Argonautoidea) and its phylogenetic position in Octopodiformes. PMID:33997282
The Comparative Analyses of Six Complete Chloroplast Genomes of Morphologically Diverse Chenopodium album L. (Amaranthaceae) Collected in Korea. PMID:33996994
TaqMan probe assays on different biological samples for the identification of three ambrosia beetle species, Xylosandrus compactus (Eichoff), X. crassiusculus (Motschulsky) and X. germanus (Blandford) (Coleoptera Curculionidae Scolytinae). PMID:33996371
ToRQuEMaDA: tool for retrieving queried Eubacteria, metadata and dereplicating assemblies. PMID:33996287
First complete mitogenomes of Diamesinae, Orthocladiinae, Prodiamesinae, Tanypodinae (Diptera: Chironomidae) and their implication in phylogenetics. PMID:33996279
Allele Sorting as a Novel Approach to Resolving the Origin of Allotetraploids Using Hyb-Seq Data: A Case Study of the Balkan Mountain Endemic Cardamine barbaraeoides. PMID:33995457
Cycad-Weevil Pollination Symbiosis Is Characterized by Rapidly Evolving and Highly Specific Plant-Insect Chemical Communication. PMID:33995438
Taxonomy and Phylogeny of Rust Fungi on Hamamelidaceae. PMID:33995305
Comparative analysis of chloroplast genome structure and molecular dating in Myrtales. PMID:33992095
Spreading of a new SARS-CoV-2 N501Y spike variant in a new lineage. PMID:33991677
Transmission, infectivity, and neutralization of a spike L452R SARS-CoV-2 variant. PMID:33991487
Tapirus bairdii-Associated Fecal Microbiome from a Critical Conservation Area: Calakmul, México. PMID:33990869
100-My history of bornavirus infections hidden in vertebrate genomes. PMID:33990470
Knl1 participates in spindle assembly checkpoint signaling in maize. PMID:33990465
Adaptive evolution of Moniliophthora PR-1 proteins towards its pathogenic lifestyle. PMID:33990179
Gut microbiota profiles of young South Indian children: Child sex-specific relations with growth. PMID:33989353
Crystal and solution structures reveal oligomerization of individual capsid homology domains of Drosophila Arc. PMID:33989344
The Presence of Ancient Core Genes Reveals Endogenization from Diverse Viral Ancestors in Parasitoid Wasps. PMID:33988720
Molecular Evolution of Ecological Specialisation: Genomic Insights from the Diversification of Murine Rodents. PMID:33988699
HyRAD-X Exome Capture Museomics Unravels Giant Ground Beetle Evolution. PMID:33988685
PhyloPrimer: a taxon-specific oligonucleotide design platform. PMID:33986979
Bioinformatics and Expression Analysis of IDA-Like Genes Reveal Their Potential Functions in Flower Abscission and Stress Response in Tobacco (Nicotiana tabacum L.). PMID:33986773
Exploring antibody repurposing for COVID-19: beyond presumed roles of therapeutic antibodies. PMID:33986382
TBC1D24 emerges as an important contributor to progressive postlingual dominant hearing loss. PMID:33986365
Diversity and infectivity of the RNA virome among different cryptic species of an agriculturally important insect vector: whitefly Bemisia tabaci. PMID:33986295
Genome Sequence of Hardyhisp2, a Gammapleolipovirus Infecting Haloarcula hispanica. PMID:33986080
Draft Genome Sequences of 29 Helicobacter pylori Strains Isolated from Colombia. PMID:33986079
Genome Sequence of a Virulent African Swine Fever Virus Isolated in 2020 from a Domestic Pig in Northern Vietnam. PMID:33986078
pSONIC: Ploidy-aware Syntenic Orthologous Networks Identified via Collinearity. PMID:33983433
Evolutionary Analysis of Pre-S/S Mutations in HBeAg-Negative Chronic Hepatitis B With HBsAg < 100 IU/ml. PMID:33981663
The Structural Difference of Isobaric N-Glycans of Two Microalgae Samples Reveals Taxonomic Distance. PMID:33981323
A metallo-β-lactamase enzyme for internal detoxification of the antibiotic thienamycin. PMID:33980996
Intracellular localization of the mycobacterial stressosome complex. PMID:33980893
Microbiome Analysis Reveals Diversity and Function of Mollicutes Associated with the Eastern Oyster, Crassostrea virginica. PMID:33980678
Genome Investigation of Urinary Gardnerella Strains and Their Relationship to Isolates of the Vaginal Microbiota. PMID:33980674
MafF Is an Antiviral Host Factor That Suppresses Transcription from Hepatitis B Virus Core Promoter. PMID:33980595
Enriched Opportunistic Pathogens Revealed by Metagenomic Sequencing Hint Potential Linkages between Pharyngeal Microbiota and COVID-19. PMID:33978940
Analysis of Paralogs in Target Enrichment Data Pinpoints Multiple Ancient Polyploidy Events in Alchemilla s.l. (Rosaceae). PMID:33978764
Elatostema qinzhouense (Urticaceae), a new species from limestone karst in Guangxi, China. PMID:33976965
Alternation between taxonomically divergent hosts is not the major determinant of flavivirus evolution. PMID:33976907
Diversity and circulation of Jingmen tick virus in ticks and mammals. PMID:33976906
Phylogeography of the northernmost distributed Anisocentropus caddisflies and their comparative genetic structures based on habitat preferences. PMID:33976862
Location, but not defensive genotype, determines ectomycorrhizal community composition in Scots pine (Pinus sylvestris L.) seedlings. PMID:33976851
Intra-host evolutionary dynamics of the hepatitis C virus among people who inject drugs. PMID:33976241
Lying in wait: the resurgence of dengue virus after the Zika epidemic in Brazil. PMID:33976183
Tryptophan Operon Diversity Reveals Evolutionary Trends among Geographically Disparate Chlamydia trachomatis Ocular and Urogenital Strains Affecting Tryptophan Repressor and Synthase Function. PMID:33975934
Disentangling the aging gene expression network of termite queens. PMID:33975542
Evolutionary trade-offs between male secondary sexual traits revealed by a phylogeny of the hyperdiverse tribe Eumaeini (Lepidoptera: Lycaenidae). PMID:33975481
Comparative Genome Analyses Highlight Transposon-Mediated Genome Expansion and the Evolutionary Architecture of 3D Genomic Folding in Cotton. PMID:33973633
Genetic insights into the dark matter of the mammalian gut microbiota through targeted genome reconstruction. PMID:33973321
Ultrafast Sample placement on Existing tRees (UShER) enables real-time phylogenetics for the SARS-CoV-2 pandemic. PMID:33972780
Bifidobacterium response to lactulose ingestion in the gut relies on a solute-binding protein-dependent ABC transporter. PMID:33972677
Pests, diseases, and aridity have shaped the genome of Corymbia citriodora. PMID:33972666
Weak selection on synonymous codons substantially inflates dN/dS estimates in bacteria. PMID:33972434
The diversity of opsins in Lake Baikal amphipods (Amphipoda: Gammaridae). PMID:33971810
Paired SARS-CoV-2 spike protein mutations observed during ongoing SARS-CoV-2 viral transfer from humans to minks and back to humans. PMID:33971305
The genome sequence of hairy root Rhizobium rhizogenes strain LBA9402: Bioinformatics analysis suggests the presence of a new opine system in the agropine Ri plasmid. PMID:33970547
Complete chloroplast genome of Clematis taeguensis (Ranunculaceae), an endemic species from South Korea. PMID:33969206
The first complete mitochondrial genome of the Northern Pacific deep-sea goniasterid sea star Ceramaster japonicus (Sladen, 1889) determined using NGS-based shotgun sequencing. PMID:33969188
Virus Prevalence and Genetic Diversity Across a Wild Bumblebee Community. PMID:33967987
Rapid and Sensitive Detection of Tomato Brown Rugose Fruit Virus in Tomato and Pepper Seeds by Reverse Transcription Loop-Mediated Isothermal Amplification Assays (Real Time and Visual) and Comparison With RT-PCR End-Point and RT-qPCR Methods. PMID:33967980
Evaluating the monophyly of Mammillaria series Supertextae (Cactaceae). PMID:33967580
Complete chloroplast genome of Myracrodruon urundeuva and its phylogenetics relationships in Anacardiaceae family. PMID:33967463
Epidemiology and evolution of Middle East respiratory syndrome coronavirus, 2012-2020. PMID:33964965
Sample Sequence Analysis Uncovers Recurrent Horizontal Transfers of Transposable Elements among Grasses. PMID:33964159
Insights into the skin microbiome of sickle cell disease leg ulcers. PMID:33964094
Improved genome assembly and pan-genome provide key insights into eggplant domestication and breeding. PMID:33964091
Evidence for Selection in the Abundant Accessory Gene Content of a Prokaryote Pangenome. PMID:33963386
Burkholderia from Fungus Gardens of Fungus-Growing Ants Produces Antifungals That Inhibit the Specialized Parasite Escovopsis. PMID:33962985
Ocean-wide genomic variation in Gray's beaked whales, Mesoplodon grayi. PMID:33959341
Phylogeny and diversity of Bjerkandera (Polyporales, Basidiomycota), including four new species from South America and Asia. PMID:33958953
First record of the rare genus Typhrasa (Psathyrellaceae, Agaricales) from China with description of two new species. PMID:33958951
Saussurea talungensis (Asteraceae), a new species from Humla, Nepal Himalayas. PMID:33958939
Structural coordination between active sites of a CRISPR reverse transcriptase-integrase complex. PMID:33958590
Complete Genome Sequence of the Endosymbiotic Bacterium "Candidatus Riesia pediculicola". PMID:33958407
Genome Sequence of Ruloma Virus, a Novel Paramyxovirus Clustering Basally to Members of the Genus Jeilongvirus. PMID:33958404
Long-read metagenomics retrieves complete single-contig bacterial genomes from canine feces. PMID:33957869
Molecular taxonomy confirms that the northeastern Atlantic and Mediterranean Sea harbor a single lancelet, Branchiostoma lanceolatum (Pallas, 1774) (Cephalochordata: Leptocardii: Branchiostomatidae). PMID:33956890
Cis-regulatory elements in conserved non-coding sequences of nuclear receptor genes indicate for crosstalk between endocrine systems. PMID:33954257
Telenomus nizwaensis (Hymenoptera: Scelionidae), an important egg parasitoid of the pomegranate butterfly Deudorix livia Klug (Lepidoptera: Lycaenidae) in Oman. PMID:33951057
Large Phylogenomic Data sets Reveal Deep Relationships and Trait Evolution in Chlorophyte Green Algae. PMID:33950183
CM1-driven assembly and activation of yeast γ-tubulin small complex underlies microtubule nucleation. PMID:33949948
Myoglobin primary structure reveals multiple convergent transitions to semi-aquatic life in the world's smallest mammalian divers. PMID:33949308
The mitochondrial genome of Asyndetus clavipes (Diptera: Dolichopodidae). PMID:33948495
Host specificity of Hepatocystis infection in short-nosed fruit bats (Cynopterus brachyotis) in Singapore. PMID:33948432
Chloroplast genomes in Populus (Salicaceae): comparisons from an intensively sampled genus reveal dynamic patterns of evolution. PMID:33947883
The genomic basis of evolutionary differentiation among honey bees. PMID:33947700
Identification of the Begomoviruses Squash Leaf Curl Virus and Watermelon Chlorotic Stunt Virus in Various Plant Samples in North America. PMID:33946382
A stony coral cell atlas illuminates the molecular and cellular basis of coral symbiosis, calcification, and immunity. PMID:33945788
An evolutionary genomic approach reveals both conserved and species-specific genetic elements related to human disease in closely related Aspergillus fungi. PMID:33944921
Elephant Genomes Reveal Accelerated Evolution in Mechanisms Underlying Disease Defenses. PMID:33944920
Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3. PMID:33944776
An Evolutionary Portrait of the Progenitor SARS-CoV-2 and Its Dominant Offshoots in COVID-19 Pandemic. PMID:33942847
Microbial iron and carbon metabolism as revealed by taxonomy-specific functional diversity in the Southern Ocean. PMID:33941887
Genomic Analysis and Lineage Identification of SARS-CoV-2 Strains in Migrants Accessing Europe Through the Libyan Route. PMID:33937168
Characterization of Three Pleiotropic Drug Resistance Transporter Genes and Their Participation in the Azole Resistance of Mucor circinelloides. PMID:33937100
Protein Serine/Threonine Phosphatase Type 2C of Leishmania mexicana. PMID:33937094
A Major Effect Gene Controlling Development and Pathogenicity in Botrytis cinerea Identified Through Genetic Analysis of Natural Mycelial Non-pathogenic Isolates. PMID:33936154
Systematic Placement of the Enigmatic Southeast Asian Genus Paralamium and an Updated Phylogeny of Tribe Pogostemoneae (Lamiaceae Subfamily Lamioideae). PMID:33936133
Additions to the Genus Arthrinium (Apiosporaceae) From Bamboos in China. PMID:33936017
Root Exudates Alter the Expression of Diverse Metabolic, Transport, Regulatory, and Stress Response Genes in Rhizosphere Pseudomonas. PMID:33936009
Learning vector quantization as an interpretable classifier for the detection of SARS-CoV-2 types based on their RNA sequences. PMID:33935376
Endothelial IGF-1 receptor mediates crosstalk with the gut wall to regulate microbiota in obesity. PMID:33934497
Zymomonas diversity and potential for biofuel production. PMID:33933155
Torque teno virus from Korean domestic swine farms, 2017-2018. PMID:33932952
Glutaredoxin: Discovery, redox defense and much more. PMID:33932870
Complete chloroplast genomes of Achnatherum inebrians and comparative analyses with related species from Poaceae. PMID:33932143
The genome of the warm-season turfgrass African bermudagrass (Cynodon transvaalensis). PMID:33931599
Correlation of Key Physiological Properties of Methanosarcina Isolates with Environment of Origin. PMID:33931421
Comparative genomics of the coconut crab and other decapod crustaceans: exploring the molecular basis of terrestrial adaptation. PMID:33931033
Exploring the evolutionary characteristics between cultivated tea and its wild relatives using complete chloroplast genomes. PMID:33931026
Formin-mediated bridging of cell wall, plasma membrane, and cytoskeleton in symbiotic infections of Medicago truncatula. PMID:33930305
The genomic history of the Aegean palatial civilizations. PMID:33930288
"Kankasha" in Kassala: A prospective observational cohort study of the clinical characteristics, epidemiology, genetic origin, and chronic impact of the 2018 epidemic of Chikungunya virus infection in Kassala, Sudan. PMID:33930028
Patterns of Natural Selection on Mitochondrial Protein-Coding Genes in Lungless Salamanders: Relaxed Purifying Selection and Presence of Positively Selected Codon Sites in the Family Plethodontidae. PMID:33928143
Intrahost speciations and host switches played an important role in the evolution of herpesviruses. PMID:33927887
Searching for universal model of amyloid signaling motifs using probabilistic context-free grammars. PMID:33926372
Isolation and Identification of a Novel Phlebovirus, Hedi Virus, from Sandflies Collected in China. PMID:33925561
Categorization of Orthologous Gene Clusters in 92 Ascomycota Genomes Reveals Functions Important for Phytopathogenicity. PMID:33925458
Characterisation of the Viral Community Associated with the Alfalfa Weevil (Hypera postica) and Its Host Plant, Alfalfa (Medicago sativa). PMID:33925168
Effects of Whole-Grain and Sugar Content in Infant Cereals on Gut Microbiota at Weaning: A Randomized Trial. PMID:33925049
Thermophilic Chloroflexi Dominate in the Microbial Community Associated with Coal-Fire Gas Vents in the Kuznetsk Coal Basin, Russia. PMID:33924824
Phylogenetic and Molecular Analyses of More Prevalent HCV1b Subtype in the Calabria Region, Southern Italy. PMID:33924449
Host-Diet Effect on the Metabolism of Bifidobacterium. PMID:33924280
Molecular Phylogeny and Evolution of Amazon Parrots in the Greater Antilles. PMID:33924228
Genome Sequence Analysis of the Oleaginous Yeast, Rhodotorula diobovata, and Comparison of the Carotenogenic and Oleaginous Pathway Genes and Gene Products with Other Oleaginous Yeasts. PMID:33924147
Comparing Sediment Microbiomes in Contaminated and Pristine Wetlands along the Coast of Yucatan. PMID:33923859
New World Cactaceae Plants Harbor Diverse Geminiviruses. PMID:33923787
Unraveling the Metabolic Potential of Asgardarchaeota in a Sediment from the Mediterranean Hydrocarbon-Contaminated Water Basin Mar Piccolo (Taranto, Italy). PMID:33923677
Structural, Evolutionary, and Functional Analysis of the Protein O-Mannosyltransferase Family in Pathogenic Fungi. PMID:33922798
Molecular Detection and Characterization of Porcine Epidemic Diarrhea Virus and Porcine Aichivirus C Coinfection in México. PMID:33922604
DNA Barcoding Identifies Unknown Females and Larvae of Fannia R.-D. (Diptera: Fanniidae) from Carrion Succession Experiment and Case Report. PMID:33922516
The Microbiome of the Reef Macroalga Sargassum ilicifolium in Singapore. PMID:33922357
Volatile Constituents of Endophytic Fungi Isolated from Aquilaria sinensis with Descriptions of Two New Species of Nemania. PMID:33921887
Genomic Analysis and Assessment of Melanin Synthesis in Amorphotheca resinae KUC3009. PMID:33921255
Biological Properties and Genetic Characterization of Novel Low Pathogenic H7N3 Avian Influenza Viruses Isolated from Mallard Ducks in the Caspian Region, Dagestan, Russia. PMID:33920551
Genetic Diversity of SARS-CoV-2 over a One-Year Period of the COVID-19 Pandemic: A Global Perspective. PMID:33920487
Characterization of Two Complete Mitochondrial Genomes of Atkinsoniella (Hemiptera: Cicadellidae: Cicadellinae) and the Phylogenetic Implications. PMID:33920412
Unique Duplication of trnN in Odontoptilum angulatum (Lepidoptera: Pyrginae) and Phylogeny within Hesperiidae. PMID:33919713
A Potential SARS-CoV-2 Variant of Interest (VOI) Harboring Mutation E484K in the Spike Protein Was Identified within Lineage B.1.1.33 Circulating in Brazil. PMID:33919314
Terpenoid Biosynthesis Dominates among Secondary Metabolite Clusters in Mucoromycotina Genomes. PMID:33918813
The Phylogeography of Potato Virus X Shows the Fingerprints of Its Human Vector. PMID:33918611
The Photosystem II Assembly Factor Ycf48 from the Cyanobacterium Synechocystis sp. PCC 6803 Is Lipidated Using an Atypical Lipobox Sequence. PMID:33918522
Molecular and Phylogenetic Characterization of Novel Papillomaviruses Isolated from Oral and Anogenital Neoplasms of Japanese Macaques (Macaca fuscata). PMID:33916990
Genome Characterization of Lactiplantibacillus plantarum Strain UTNGt2 Originated from Theobroma grandiflorum (White Cacao) of Ecuadorian Amazon: Antimicrobial Peptides from Safety to Potential Applications. PMID:33916842
Cyanotoxin Screening in BACA Culture Collection: Identification of New Cylindrospermopsin Producing Cyanobacteria. PMID:33916821
Phylogenomic Insights into Distribution and Adaptation of Bdellovibrionota in Marine Waters. PMID:33916768
ZC3H4 restricts non-coding transcription in human cells. PMID:33913806
Discordant Phylogenomic Placement of Hydnoraceae and Lactoridaceae Within Piperales Using Data From All Three Genomes. PMID:33912209
An Unexpectedly High Number of New Sutorius (Boletaceae) Species From Northern and Northeastern Thailand. PMID:33912149
High Rates of Genome Rearrangements and Pathogenicity of Shigella spp. PMID:33912145
Complete chloroplast genome sequences of Dipterygium glaucum and Cleome chrysantha and other Cleomaceae Species, comparative analysis and phylogenetic relationships. PMID:33911961
Expanded diversity of Asgard archaea and their relationships with eukaryotes. PMID:33911286
Reductive evolution and unique predatory mode in the CPR bacterium Vampirococcus lugosii. PMID:33911080
Chromosome-scale assembly and analysis of biomass crop Miscanthus lutarioriparius genome. PMID:33911077
Multiple Infiltration and Cross-Species Transmission of Foamy Viruses across the Paleozoic to the Cenozoic Era. PMID:33910951
Museomics and phylogenomics with protein-encoding ultraconserved elements illuminate the evolution of life history and phallic morphology of flesh flies (Diptera: Sarcophagidae). PMID:33910519
Insight into the introduction of domestic cattle and the process of Neolithization to the Spanish region Galicia by genetic evidence. PMID:33909617
SARS-CoV-2 transmission dynamics in Belarus revealed by genomic and incidence data analysis. PMID:33907756
Detection and characterization of the SARS-CoV-2 lineage B.1.526 in New York. PMID:33907745
Functional Characterization of the m6A-Dependent Translational Modulator PfYTH.2 in the Human Malaria Parasite. PMID:33906926
Antiviral Resistance and Phage Counter Adaptation to Antibiotic-Resistant Extraintestinal Pathogenic Escherichia coli. PMID:33906920
Longitudinal Profiling of the Macaque Vaginal Microbiome Reveals Similarities to Diverse Human Vaginal Communities. PMID:33906914
A complete enzymatic capacity for biosynthesis of docosahexaenoic acid (DHA, 22 : 6n-3) exists in the marine Harpacticoida copepod Tigriopus californicus. PMID:33906414
Large-Scale Annotation and Evolution Analysis of MiRNA in Insects. PMID:33905491
Chloroplast acquisition without the gene transfer in kleptoplastic sea slugs, Plakobranchus ocellatus. PMID:33902812
Microbial diversity of co-occurring heterotrophs in cultures of marine picocyanobacteria. PMID:33902739
Genome-wide identification of sucrose nonfermenting-1-related protein kinase (SnRK) genes in barley and RNA-seq analyses of their expression in response to abscisic acid treatment. PMID:33902444
Use of Genomics to Track Coronavirus Disease Outbreaks, New Zealand. PMID:33900175
Comprehensive phylogeny of Konosirus punctatus (Clupeiformes: Clupeidae) based on transcriptomic data. PMID:33899917
The complete chloroplast genome of Melicope pteleifolia (Champ. ex Benth.) T. G. Hartley (Rutaceae). PMID:33898750
The complete chloroplast genome of Bupleurum euphorbioides, a traditional medicinal plant. PMID:33898748
The complete chloroplast genome of Stemona tuberosa Lour (Stemonaceae). PMID:33898747
Molecular characterization of an avian GA13-like infectious bronchitis virus full-length genome from Costa Rica. PMID:33898651
Safety and Modulatory Effects of Humanized Galacto-Oligosaccharides on the Gut Microbiome. PMID:33898497
Ophiotaenia echidis n. sp. (Cestoda: Proteocephalidae) from the saw-scaled viper, Echis carinatus sochureki Stemmler (Ophidia: Viperidae), one of the world's deadliest snakes, from the United Arab Emirates. PMID:33898236
Two new species of Cephalogonimidae Looss, 1899 (Digenea: Plagiorchioidea) from Africa (Mozambique and Guinea), including a new phylogenetic hypothesis for related plagiorchioids. PMID:33898223
AMR-Diag: Neural network based genotype-to-phenotype prediction of resistance towards β-lactams in Escherichia coli and Klebsiella pneumoniae. PMID:33897984
Global phylogeography and invasion history of the spotted lanternfly revealed by mitochondrial phylogenomics. PMID:33897812
Carbonic Anhydrases: An Ancient Tool in Calcareous Sponge Biomineralization. PMID:33897759
Ubiquitination in Plant Meiosis: Recent Advances and High Throughput Methods. PMID:33897750
A Novel NAC Transcription Factor From Eucalyptus, EgNAC141, Positively Regulates Lignin Biosynthesis and Increases Lignin Deposition. PMID:33897732
Genetic Variability of Human Cytomegalovirus Clinical Isolates Correlates With Altered Expression of Natural Killer Cell-Activating Ligands and IFN-γ. PMID:33897679
Domestication Shapes the Community Structure and Functional Metagenomic Content of the Yak Fecal Microbiota. PMID:33897627
HIV Drug Resistance and Transmission Networks Among a Justice-Involved Population at the Time of Community Reentry in Washington, D.C. PMID:33896212
Mutation Rates and Selection on Synonymous Mutations in SARS-CoV-2. PMID:33895815
RNase R is associated in a functional complex with the RhpA DEAD-box RNA helicase in Helicobacter pylori. PMID:33893809
Introduction, Transmission Dynamics, and Fate of Early Severe Acute Respiratory Syndrome Coronavirus 2 Lineages in Santa Clara County, California. PMID:33893501
Field multi-omics analysis reveals a close association between bacterial communities and mineral properties in the soybean rhizosphere. PMID:33893339
Brockarchaeota, a novel archaeal phylum with unique and versatile carbon cycling pathways. PMID:33893309
Mitochondrial analysis of oribatid mites provides insights into their atypical tRNA annotation, genome rearrangement and evolution. PMID:33892790
Cotton pan-genome retrieves the lost sequences and genes during domestication and selection. PMID:33892774
Evolution of the codling moth pheromone via an ancient gene duplication. PMID:33892710
Phylogenetic and Selection Analysis of an Expanded Family of Putatively Pore-Forming Jellyfish Toxins (Cnidaria: Medusozoa). PMID:33892512
Phylogenomics resolves deep subfamilial relationships in Malvaceae s.l. PMID:33892500
Early introductions and transmission of SARS-CoV-2 variant B.1.1.7 in the United States. PMID:33891875
Unexpected distribution of the 4-formylaminooxyvinylglycine (FVG) biosynthetic pathway in Pseudomonas and beyond. PMID:33891610
Drosophila female reproductive tract gene expression reveals coordinated mating responses and rapidly evolving tissue-specific genes. PMID:33890615
The complete chloroplast genome sequence of three medicinal species; Curcuma longa, Curcuma wenyujin, and Curcuma phaeocaulis (Zingiberaceae). PMID:33889750
The complete chloroplast genome sequence of Oxalis corniculata (L.). PMID:33889744
The complete plastome of Primula wilsonii, a heterostylous ornamental species. PMID:33889739
Base Composition and Host Adaptation of the SARS-CoV-2: Insight From the Codon Usage Perspective. PMID:33889134
Geography is more important than life history in the recent diversification of the tiger salamander complex. PMID:33888580
Chloroplast phylogenomic insights into the evolution of Distylium (Hamamelidaceae). PMID:33888057
Effects of phytonutrient-supplemented diets on the intestinal microbiota of Cyprinus carpio. PMID:33886562
The nuclear GUCT domain-containing DEAD-box RNA helicases govern gametophytic and sporophytic development in Physcomitrium patens. PMID:33886069
New framework for recombination and adaptive evolution analysis with application to the novel coronavirus SARS-CoV-2. PMID:33885735
Crystal structure and molecular dynamics of human POLDIP2, a multifaceted adaptor protein in metabolism and genome stability. PMID:33884680
Integrative taxonomy uncovers a new stygobiotic Caridina species (Decapoda, Caridea, Atyidae) from Guizhou Province, China. PMID:33883966
Integrative descriptions of two new species of Dugesia from Hainan Island, China (Platyhelminthes, Tricladida, Dugesiidae). PMID:33883965
Microstructures amplify carotenoid plumage signals in tanagers. PMID:33883641
Establishment of Culex modestus in Belgium and a Glance into the Virome of Belgian Mosquito Species. PMID:33883261
Genome characterization of parsley severe stunt-associated virus in Iran. PMID:33881682
Coincident rapid expansion of two SARS-CoV-2 lineages with enhanced infectivity in Nigeria. PMID:33880483
Identification and characterization of repetitive DNA in the genus Didelphis Linnaeus, 1758 (Didelphimorphia, Didelphidae) and the use of satellite DNAs as phylogenetic markers. PMID:33877257
Sequence analysis of new variants of porcine epidemic diarrhea virus in Luzon, Philippines, in 2017. PMID:33876315
Metagenomic shotgun sequencing reveals host species as an important driver of virome composition in mosquitoes. PMID:33875673
Genomic insights into the origin, domestication and genetic basis of agronomic traits of castor bean. PMID:33874982
Structural variation affecting DNA backbone interactions underlies adaptation of B3 DNA binding domains to constraints imposed by protein architecture. PMID:33872371
Large-Scale Phylogenomic Analyses Reveal the Monophyly of Bryophytes and Neoproterozoic Origin of Land Plants. PMID:33871608
Ancestral sequence reconstruction - An underused approach to understand the evolution of gene function in plants? PMID:33868595
Mink, SARS-CoV-2, and the Human-Animal Interface. PMID:33868218
Potamophylax coronavirus sp. n. (Trichoptera: Limnephilidae), a new species from Bjeshkët e Nemuna National Park in the Republic of Kosovo, with molecular and ecological notes. PMID:33867804
Plastome analysis unveils Inverted Repeat (IR) expansion and positive selection in Sea Lavenders (Limonium, Plumbaginaceae, Limonioideae, Limonieae). PMID:33867801
Multi-omics analysis provides insights into lignocellulosic biomass degradation by Laetiporus sulphureus ATCC 52600. PMID:33865436
Congolius, a new genus of African reed frog endemic to the central Congo: A potential case of convergent evolution. PMID:33863953
Phylogenomic and morphological relationships among the botryllid ascidians (Subphylum Tunicata, Class Ascidiacea, Family Styelidae). PMID:33863944
Field and classroom initiatives for portable sequence-based monitoring of dengue virus in Brazil. PMID:33863880
Gregarine single-cell transcriptomics reveals differential mitochondrial remodeling and adaptation in apicomplexans. PMID:33863338
Genome sequencing and comparative genomic analysis of highly and weakly aggressive strains of Sclerotium rolfsii, the causal agent of peanut stem rot. PMID:33863285
First record of Oscheius myriophilus () (Rhabditida: Rhabditidae) from Iran; and its efficacy against two economic forest trees pests, Cydalima perspectalis (Walker, 1859) (Lepidoptera: Crambidae) and Hyphantria cunea () (Lepidoptera: Erebidae) in laboratory condition. PMID:33860274
Basilaphelenchus hyrcanus n. sp. (Rhabditida: Tylaphelenchinae) associated with bark of a beech tree (Fagus orientalis Lipsky) from northern Iran. PMID:33860258
Description of Longidorella (Saevadorella) caspica n. sp. (Dorylaimida: Nordiidae) from north Iran. PMID:33860248
A new cyst-forming nematode, Cactodera tianzhuensis n. sp. (Nematoda:Heteroderinae) from Polygonum viviparum in China with a key to the Genus Cactodera. PMID:33860242
Detection of Pratylenchus zeae and P. brachyurus parasitizing plants from the caatinga biome, Ceará, Brazil. PMID:33860236
Systematics of 'lithistid' tetractinellid demosponges from the Tropical Western Atlantic-implications for phylodiversity and bathymetric distribution. PMID:33859870
Near-Complete Genome Sequences of Eight Human Astroviruses Recovered from Diarrheal Stool Samples of Hospitalized Children in Coastal Kenya in 2019. PMID:33858926
Transcriptomic and proteomic analysis of putative digestive proteases in the salivary gland and gut of Empoasca (Matsumurasca) onukii Matsuda. PMID:33858340
Genomic characteristics and clinical effect of the emergent SARS-CoV-2 B.1.1.7 lineage in London, UK: a whole-genome sequencing and hospital-based cohort study. PMID:33857406
Complete chloroplast genome sequence of a Chinese traditional cultivar in Chrysanthemum, Chrysanthemum morifolium 'Anhuishiliuye'. PMID:33855177
Comparative chloroplast genomes and phylogenetic analysis of Aquilegia. PMID:33854846
H3K4me2 ChIP-Seq reveals the epigenetic landscape during mushroom formation and novel developmental regulators of Schizophyllum commune. PMID:33854169
Land use in urban areas impacts the composition of soil bacterial communities involved in nitrogen cycling. A case study from Lefkosia (Nicosia) Cyprus. PMID:33854127
Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil. PMID:33853970
Addressing widespread misidentifications of traditional medicinal mushrooms in Sanghuangporus (Basidiomycota) through ITS barcoding and designation of reference sequences. PMID:33853671
Phylogenetic analysis of Harmonin homology domains. PMID:33853521
Structural basis for broad sarbecovirus neutralization by a human monoclonal antibody. PMID:33851169
Antibodies to the SARS-CoV-2 receptor-binding domain that maximize breadth and resistance to viral escape. PMID:33851154
New alignment-based sequence extraction software (ALiBaSeq) and its utility for deep level phylogenetics. PMID:33850647
SARS-CoV-2 ORF6 Disrupts Bidirectional Nucleocytoplasmic Transport through Interactions with Rae1 and Nup98. PMID:33849972
Complete genome sequence of a novel nege-like virus in aphids (genus Indomegoura). PMID:33849583
Lowered sensitivity of bitter taste receptors to β-glucosides in bamboo lemurs: an instance of parallel and adaptive functional decline in TAS2R16? PMID:33849315
Origin and evolution of nonulosonic acid synthases and their relationship with bacterial pathogenicity revealed by a large-scale phylogenetic analysis. PMID:33848237
Integration of genomic sequencing into the response to the Ebola virus outbreak in Nord Kivu, Democratic Republic of the Congo. PMID:33846610
Divalent metal transporter-related protein restricts animals to marine habitats. PMID:33846549
On species delimitation, hybridization and population structure of cassava whitefly in Africa. PMID:33846476
Determinants of lungworm specificity in five cetacean species in the western Mediterranean. PMID:33845871
Structure-based phylogeny identifies avoralstat as a TMPRSS2 inhibitor that prevents SARS-CoV-2 infection in mice. PMID:33844653
Complete map of SARS-CoV-2 RBD mutations that escape the monoclonal antibody LY-CoV555 and its cocktail with LY-CoV016. PMID:33842902
Flexibility in Red Sea Tridacna maxima-Symbiodiniaceae associations supports environmental niche adaptation. PMID:33841792
Comparative Plastomes and Phylogenetic Analysis of Cleistogenes and Closely Related Genera (Poaceae). PMID:33841465
Taxonomy and Phylogeny of the Fomitopsis pinicola Complex With Descriptions of Six New Species From East Asia. PMID:33841369
Definition of a High-Resolution Molecular Marker for Tracking the Genetic Diversity of the Harmful Algal Species Eucampia zodiacus Through Comparative Analysis of Mitochondrial Genomes. PMID:33841358
HAG1 and SWI3A/B control of male germ line development in P. patens suggests conservation of epigenetic reproductive control across land plants. PMID:33839924
Population Genomics of the Maize Pathogen Ustilago maydis: Demographic History and Role of Virulence Clusters in Adaptation. PMID:33837781
Genes Encoding Microbial Acyl Coenzyme A Binding Protein/Diazepam-Binding Inhibitor Orthologs Are Rare in the Human Gut Microbiome and Show No Links to Obesity. PMID:33837018
Improving protein domain classification for third-generation sequencing reads using deep learning. PMID:33836667
Bayesian Phylogeographic Analysis Incorporating Predictors and Individual Travel Histories in BEAST. PMID:33836121
SARS-CoV-2 outbreak in Iran: The dynamics of the epidemic and evidence on two independent introductions. PMID:33835709
New arrangement of three genera of fish tapeworms (Cestoda: Proteocephalidae) in catfishes (Siluriformes) from the Neotropical Region: taxonomic implications of molecular phylogenetic analyses. PMID:33835243
Phenotypic plasticity explains apparent reverse evolution of fat synthesis in parasitic wasps. PMID:33833245
Under pressure: phenotypic divergence and convergence associated with microhabitat adaptations in Triatominae. PMID:33832518
A human coronavirus evolves antigenically to escape antibody immunity. PMID:33831132
Genome-wide identification and expression analysis of late embryogenesis abundant protein-encoding genes in rye (Secale cereale L.). PMID:33831102
Discriminating arboviral species. PMID:33830905
Characterization of a population of Pelodera strongyloides (Nematoda: Rhabditidae) associated with the beetle Lucanus ibericus (Coleoptera: Lucanidae) from Georgia. PMID:33829207
Description of Heterodera microulae sp. n. (Nematoda: Heteroderinae) from China - a new cyst nematode in the Goettingiana group. PMID:33829200
Morphological and molecular analyses of a Meloidogyne mali population with high intragenomic rRNA polymorphism. PMID:33829187
Oostenbrinkia pedrami n. sp. (Dorylaimida: Aulolaimoididae) from Iran, with molecular phylogenetic relationships to some other Dorylaimida Pearse, 1942. PMID:33829173
Metagenomic discovery and co-infection of diverse wobbly possum disease viruses and a novel hepacivirus in Australian brushtail possums. PMID:33829126
Characterization of the leafhopper mitogenome of Mileewa alara (Hemiptera: Cicadellidae: Mileewinae) and its phylogenetic analysis. PMID:33829103
The plastome of Phaius hainanensis (Orchidaceae): an endangered species endemic to Hainan province, China. PMID:33829100
The complete chloroplast genome of Castanea sativa Mill. (Fagaceae). PMID:33829098
The complete plastid genome of Thrixspermum centipeda (Orchidaceae, Aeridinae). PMID:33829096
Complete mitochondrial genome of the copepod Sinergasilus undulates (Copepoda: Poecilostomatoida). PMID:33829091
The complete chloroplast genome of Castanea mollissima 'Chuizhili'. PMID:33829080
Molecular Evolution of Human Norovirus GII.2 Clusters. PMID:33828543
The structure, function and evolution of a complete human chromosome 8. PMID:33828295
Unexpected genomic, biosynthetic and species diversity of Streptomyces bacteria from bats in Arizona and New Mexico, USA. PMID:33827425
EzMAP: Easy Microbiome Analysis Platform. PMID:33827413
Quantifying evolutionary importance of protein sites: A Tale of two measures. PMID:33826605
An Alternative and Conserved Cell Wall Enzyme That Can Substitute for the Lipid II Synthase MurG. PMID:33824209
The Gut Microbiome in Autism: Study-Site Effects and Longitudinal Analysis of Behavior Change. PMID:33824197
Functional genomics of a Spiroplasma associated with the carmine cochineals Dactylopius coccus and Dactylopius opuntiae. PMID:33823812
Neonatal Enteropathogenic Escherichia coli Infection Disrupts Microbiota-Gut-Brain Axis Signaling. PMID:33820817
Mitochondrial genome architecture and phylogenetic relationships of Odontesthes argentinensis within Atherinomorpha. PMID:33817771
Genomic Characterization of Campylobacter jejuni Adapted to the Guinea Pig (Cavia porcellus) Host. PMID:33816330
Changes in the Human Gut Microbiota Associated With Colonization by Blastocystis sp. and Entamoeba spp. in Non-Industrialized Populations. PMID:33816323
A review of novel coronavirus disease (COVID-19): based on genomic structure, phylogeny, current shreds of evidence, candidate vaccines, and drug repurposing. PMID:33816047
Genomic Variations in SARS-CoV-2 Genomes From Gujarat: Underlying Role of Variants in Disease Epidemiology. PMID:33815459
Phylogenetic Distribution of Polysaccharide-Degrading Enzymes in Marine Bacteria. PMID:33815349
Aerobic Denitrification and Heterotrophic Sulfur Oxidation in the Genus Halomonas Revealed by Six Novel Species Characterizations and Genome-Based Analysis. PMID:33815342
Adaptation of Microbial Communities to Environmental Arsenic and Selection of Arsenite-Oxidizing Bacteria From Contaminated Groundwaters. PMID:33815317
Phytophthora theobromicola sp. nov.: A New Species Causing Black Pod Disease on Cacao in Brazil. PMID:33815301
Inference of DNA methylation patterns in molluscs. PMID:33813896
Single individual structural variant detection uncovers widespread hemizygosity in molluscs. PMID:33813894
MolluscDB: a genome and transcriptome database for molluscs. PMID:33813885
The evolutionary fate of rpl32 and rps16 losses in the Euphorbia schimperi (Euphorbiaceae) plastome. PMID:33811236
Investigating the Parasitoid Community Associated with the Invasive Mealybug Phenacoccus solenopsis in Southern China. PMID:33810458
Detection of Tioman Virus in Pteropus vampyrus Near Flores, Indonesia. PMID:33810446
Multiple Early Introductions of SARS-CoV-2 to Cape Town, South Africa. PMID:33810168
Amplicon Sequencing of Variable 16S rRNA from Bacteria and ITS2 Regions from Fungi and Plants, Reveals Honeybee Susceptibility to Diseases Results from Their Forage Availability under Anthropogenic Landscapes. PMID:33810160
Conserved Structural Motifs of Two Distant IAV Subtypes in Genomic Segment 5 RNA. PMID:33810157
Transient Receptor Potential (TRP) Channels in the Pacific Oyster (Crassostrea gigas): Genome-Wide Identification and Expression Profiling after Heat Stress between C. gigas and C. angulata. PMID:33810107
Exploring Prokaryotic and Eukaryotic Microbiomes Helps in Detecting Tick-Borne Infectious Agents in the Blood of Camels. PMID:33809738
Multiple Reassortants of H5N8 Clade 2.3.4.4b Highly Pathogenic Avian Influenza Viruses Detected in South Korea during the Winter of 2020-2021. PMID:33809549
Novel Genetic Rearrangements in Hepatitis B Virus: Complex Structural Variations and Structural Variation Polymorphisms. PMID:33809245
Genetic Diversity and Pathogenicity of Botryosphaeriaceae Species Associated with Symptomatic Citrus Plants in Europe. PMID:33807726
Molecular Characterization of Coxsackievirus A24v from Feces and Conjunctiva Reveals Epidemiological Links. PMID:33807540
Effects of Clinical Wastewater on the Bacterial Community Structure from Sewage to the Environment. PMID:33807193
WGS of Commensal Neisseria Reveals Acquisition of a New Ribosomal Protection Protein (MsrD) as a Possible Explanation for High Level Azithromycin Resistance in Belgium. PMID:33806962
Molecular Systematics of the Firefly Genus Luciola (Coleoptera: Lampyridae: Luciolinae) with the Description of a New Species from Singapore. PMID:33806564
Profile of Small RNAs, vDNA Forms and Viral Integrations in Late Chikungunya Virus Infection of Aedes albopictus Mosquitoes. PMID:33806250
Essential Oil Composition and DNA Barcode and Identification of Aniba species (Lauraceae) Growing in the Amazon Region. PMID:33805452
Genetic and Antigenic Characterization of Avian Avulavirus Type 6 (AAvV-6) Circulating in Canadian Wild Birds (2005-2017). PMID:33805157
Genome Analysis of Endotrypanum and Porcisia spp., Closest Phylogenetic Relatives of Leishmania, Highlights the Role of Amastins in Shaping Pathogenicity. PMID:33804709
Genome Sequence Analysis of First Ross River Virus Isolate from Papua New Guinea Indicates Long-Term, Local Evolution. PMID:33804215
The Destructive Tree Pathogen Phytophthora ramorum Originates from the Laurosilva Forests of East Asia. PMID:33803849
An Amplicon-Based Approach for the Whole-Genome Sequencing of Human Metapneumovirus. PMID:33803613
Molecular Characterization of Three B-1,4-Endoglucanase Genes in Pratylenchus loosi and Functional Analysis of Pl-eng-2 Gene. PMID:33802850
Three New Derivatives of Zopfinol from Pseudorhypophila Mangenotii gen. et comb. nov. PMID:33802411
Antennal Transcriptome Analysis and Identification of Candidate Chemosensory Genes of the Harlequin Ladybird Beetle, Harmonia axyridis (Pallas) (Coleoptera: Coccinellidae). PMID:33801288
Brevetoxin and Conotoxin Interactions with Single-Domain Voltage-Gated Sodium Channels from a Diatom and Coccolithophore. PMID:33801270
Protein-Coding Genes of Helicobacter pylori Predominantly Present Purifying Selection though Many Membrane Proteins Suffer from Selection Pressure: A Proposal to Analyze Bacterial Pangenomes. PMID:33800844
Expansion and Diversification of Fluorescent Protein Genes in Fifteen Acropora Species during the Evolution of Acroporid Corals. PMID:33799612
Genomic and anatomical comparisons of skin support independent adaptation to life in water by cetaceans and hippos. PMID:33798433
Reevaluating the timing of Neanderthal disappearance in Northwest Europe. PMID:33798098
Molecular Cloning and Characterization of FAD6 Gene from Chia (Salvia hispanica L.). PMID:33797013
Molecular surveillance of coxsackievirus A16 in southern China, 2008-2019. PMID:33796884
Isolation and Characterization of Klebsiella Phages for Phage Therapy. PMID:33796863
The complete chloroplast genome sequences and phylogenetic analysis of Crotalaria pallida (Leguminosae). PMID:33796789
The complete chloroplast genome of Callicarpa bodinieri (Lamiales, Lamiaceae), an ornamental and medicinal plant from Chongqing, China. PMID:33796788
The third complete chloroplast genome of Melicope pteleifolia (Rutaceae): a widely used folk medicinal herb. PMID:33796785
Characterization and phylogenetic analysis of the complete mitochondrial genome of Lathyrophthalmus quinquestriatus (Fabricius, 1794)(Diptera, Syrphidae). PMID:33796780
The complete chloroplast genome of Malva wigandii (Alef.) M.F. Ray (Malvaceae, Malvoideae). PMID:33796779
Complete chloroplast genome sequence and phylogenetic analysis of dragon fruit (Selenicereus undatus (Haw.) D.R.Hunt). PMID:33796774
The complete chloroplast genome of Hippeastrum rutilum (Ker-Gawl.) Herb. PMID:33796769
The complete chloroplast genome sequence of Vernonia amygdalina Delile. PMID:33796766
Characterization of the complete chloroplast genome sequence of Actinidia kolomikta. PMID:33796764
The complete mitochondrial genome of Sanghuangporus vaninii Zhehuang-1 (Hymenochaetales, Basidiomycota). PMID:33796753
Characterization of the complete plastome of Eleusine coracana (Gramineae), an annual crop. PMID:33796750
The complete mitochondrial genome of Downesia tarsata (Coleoptera: Chrysomelidae: Cassidinae). PMID:33796743
The complete chloroplast genome of Ottelia acuminate var. crispa, an endangered aquatic herb with extremely narrow distribution. PMID:33796742
Chloroplast genome features and phylogenomic placement of Sorbus hupehensis var. paucijuga (Rosaceae). PMID:33796741
Characterization of the complete plastome of Aster pekinensis (Asteraceae), a perennial herb. PMID:33796739
The complete chloroplast genome sequence of coastal psammophyte, Ixeris repens (Asteraceae, subtribe Crepidinae), in Korea. PMID:33796734
The complete chloroplast genome sequence of a narrow alpine endemic, Taraxacum hallaisanense (Asteraceae), on Jeju Island, Korea. PMID:33796730
The complete chloroplast genome of Toona sinensis, an important economic and medicinal plant endemic in China. PMID:33796726
The complete chloroplast genome of Ophiopogon bodinieri Levl. and its phylogenetic position. PMID:33796725
Characterization of the complete chloroplast genome of Syzygium nervosum. PMID:33796721
First mitochondrial genome of the marbled polecat Vormela peregusna (Carnivora, Mustelidae). PMID:33796719
Characterization and phylogenetic analysis of the complete plastome of Maclura tricuspidata (Moraceae). PMID:33796712
Characterization and phylogenetic analysis of the complete plastome of Ipomoea aquatica (Convolvulaceae), an edible vegetable. PMID:33796711
Complete chloroplast genome of Sinosenecio jishouensis D.G. Zhang, Ying Liu & Q. E. Yang (Asteraceae), a narrow endemic species in Wuling Mountain Region, China. PMID:33796708
The complete chloroplast genome of a solid type of Phyllostachys nidularia (Bambusoideae: Poaceae), a species endemic to China. PMID:33796706
The complete chloroplast genome of Schizostachyum dumetorum var. xinwuense (Bambusoideae: Poaceae). PMID:33796705
Complete chloroplast genome of a novel chlorophyll-deficient mutant (clm) in sweetpotato (Ipomoea batatas L.). PMID:33796701
The complete mitochondrial genome sequences of Japanese earthworms Metaphire hilgendorfi and Amynthas yunoshimensis (Clitellata: Megascolecidae). PMID:33796700
The complete chloroplast genome of Ocimum gratissimum from India - a medicinal plant in the Lamiaceae. PMID:33796694
The complete plastome sequence of Tanakaea radicans (Saxifragaceae) and its phylogenetic analysis. PMID:33796693
The complete chloroplast genome sequence of Oryza sativa Temperate japonica. PMID:33796685
The complete mitochondrial genome of Yuukianura szeptyckii Deharveng & Weiner 1984 (Collembola: Neanuridae). PMID:33796684
Mitochondrial genome of Aphis gossypii Glover cucumber biotype (Hemiptera: Aphididae). PMID:33796683
The first complete chloroplast genome of Hovenia dulcis Thunb. (Rhamnaceae). PMID:33796680
The complete chloroplast genome of leguminous forage Onobrychis viciifolia. PMID:33796672
The complete chloroplast genome of Tibetan medicinal plant Rubus phoenicolasius Maxim. PMID:33796668
First mitochondrial genome of the Caucasian squirrel Sciurus anomalus (Rodentia, Sciuridae). PMID:33796667
The complete chloroplast genome of wild Magnolia officinalis Rehd. et Wils. PMID:33796666
The complete chloroplast genome of Bupleurum euphorbioides, a traditional medicinal plant. PMID:33796662
Characterization of the complete chloroplast genome of Quercus virginiana Mill. (Fagaceae). PMID:33796661
First report of the mitogenome of Hamaxiella brunnescens (Diptera, Tachinidae) from Beijing, China. PMID:33796659
The complete mitochondrial genome of the endemic Iberian pygmy skate Neoraja iberica Stehmann, Séret, Costa, & Baro 2008 (Elasmobranchii, Rajidae). PMID:33796653
Complete chloroplast genome of Camellia chekiangoleosa (Theaceae), a shrub with gorgeous flowers and rich seed oil. PMID:33796649
The complete chloroplast genome sequence of Achimenes cettoana (Gesneriaceae). PMID:33796642
Comparative Analysis of Plastid Genomes in the Non-photosynthetic Genus Thismia Reveals Ongoing Gene Set Reduction. PMID:33796122
Fungal Diversity and Community Assembly of Ectomycorrhizal Fungi Associated With Five Pine Species in Inner Mongolia, China. PMID:33796093
Genomes of Thaumarchaeota from deep sea sediments reveal specific adaptations of three independently evolved lineages. PMID:33795828
Comparative genomics of Chlamydomonas. PMID:33793842
Comparative Functional and Phylogenomic Analyses of Host Association in the Remoras (Echeneidae), a Family of Hitchhiking Fishes. PMID:33793688
Large vs small genomes in Passiflora: the influence of the mobilome and the satellitome. PMID:33792791
Synteny-Based Genome Assembly for 16 Species of Heliconius Butterflies, and an Assessment of Structural Variation across the Genus. PMID:33792688
Comparative Analysis of Complete Chloroplast Genome Sequences in Edgeworthia (Thymelaeaceae) and New Insights Into Phylogenetic Relationships. PMID:33790948
Evolution of Matrix Gla and Bone Gla Protein Genes in Jawed Vertebrates. PMID:33790944
Sulfoquinovose is a select nutrient of prominent bacteria and a source of hydrogen sulfide in the human gut. PMID:33790426
Characterization of new cristamonad species from kalotermitid termites including a novel genus, Runanympha. PMID:33790354
Connecting structure to function with the recovery of over 1000 high-quality metagenome-assembled genomes from activated sludge using long-read sequencing. PMID:33790294
Genomic analysis uncovers functional variation in the C-terminus of anthocyanin-activating MYB transcription factors. PMID:33790254
Elucidation of the Complicated Scenario of Primate APOBEC3 Gene Evolution. PMID:33789992
Casting Light on the Adaptation Mechanisms and Evolutionary History of the Widespread Sumerlaeota. PMID:33785617
Emergence and outcomes of the SARS-CoV-2 'Marseille-4' variant. PMID:33785459
Uncovering a novel function of the CCR4-NOT complex in phytochrome A-mediated light signalling in plants. PMID:33783355
Striking parallels between dorsoventral patterning in Drosophila and Gryllus reveal a complex evolutionary history behind a model gene regulatory network. PMID:33783353
Pre-Columbian transregional captive rearing of Amazonian parrots in the Atacama Desert. PMID:33782109
Biosynthesis of the Sex Pheromone Component (E,Z)-7,9-Dodecadienyl Acetate in the European Grapevine Moth, Lobesia botrana, Involving ∆11 Desaturation and an Elusive ∆7 Desaturase. PMID:33779878
The intestinal microbiota and metabolites in patients with anorexia nervosa. PMID:33779487
Phylogenomic tracing of asymptomatic transmission in a COVID-19 outbreak. PMID:33778799
Phylogenomic analysis of COVID-19 summer and winter outbreaks in Hong Kong: An observational study. PMID:33778795
Development of genomic resources for the genus Celtis (Cannabaceae) based on genome skimming data. PMID:33778224
Plastid phylogenomic insights into the evolution of subfamily Dialioideae (Leguminosae). PMID:33778222
CreA-mediated repression of gene expression occurs at low monosaccharide levels during fungal plant biomass conversion in a time and substrate dependent manner. PMID:33778219
Phylogeny and evolution of Lasiopodomys in subfamily Arvivolinae based on mitochondrial genomics. PMID:33777513
Molecular Evolution and Organization of Ribosomal DNA in the Hawkweed Tribe Hieraciinae (Cichorieae, Asteraceae). PMID:33777082
Antimicrobial Activity of Necklace Orchids is Phylogenetically Clustered and can be Predicted With a Biological Response Method. PMID:33776752
Phylogeny and historical biogeography analysis support Caucasian and Mediterranean centres of origin of key holoparasitic Orobancheae (Orobanchaceae) lineages. PMID:33776529
Hoya pyrifolia (Apocynaceae), a new species from south-western Yunnan, China. PMID:33776525
Variation in climatic tolerance, but not stomatal traits, partially explains Pooideae grass species distributions. PMID:33772589
Phylogenetic Analyses of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) B.1.1.7 Lineage Suggest a Single Origin Followed by Multiple Exportation Events Versus Convergent Evolution. PMID:33772259
The metabolic network of the last bacterial common ancestor. PMID:33772086
The evolutionary dynamics of endemic human coronaviruses. PMID:33768964
Long insert clone experimental evidence for assembly improvement and chimeric chromosomes detection in an allopentaploid beer yeast. PMID:33768233
Using historical genome-wide DNA to unravel the confused taxonomy in a songbird lineage that is extinct in the wild. PMID:33767745
Plastid phylogenomics resolves ambiguous relationships within the orchid family and provides a solid timeframe for biogeography and macroevolution. PMID:33767214
A molecular timescale for eukaryote evolution with implications for the origin of red algal-derived plastids. PMID:33767194
Sarbecovirus ORF6 proteins hamper induction of interferon signaling. PMID:33765414
Opportunities and Limitations for Assigning Relative Configurations of Antibacterial Bislactones using GIAO NMR Shift Calculations. PMID:33764773
Dissemination and evolution of SARS-CoV-2 in the early pandemic phase in South America. PMID:33764553
Genome-wide signatures of plastid-nuclear coevolution point to repeated perturbations of plastid proteostasis systems across angiosperms. PMID:33764472
Torix Rickettsia are widespread in arthropods and reflect a neglected symbiosis. PMID:33764469
The complete chloroplast genome of Mnium marginatum (With.) P. Beauv. PMID:33763597
The complete chloroplast genome sequence of Metabriggsia ovalifolia W. T. Wang (Gesneriaceae), a national key protected plant endemic to Karst areas in China. PMID:33763595
The complete chloroplast genome of Akebia longeracemosa (Lardizabalaceae). PMID:33763592
Characterization of the complete chloroplast genome of Polyspora tiantangensis (Theaceae), an endemic and endangered species in southwestern China. PMID:33763587
The complete mitochondrial genome of Douinia plicata (Lindb.) Konstant. et. Vilnet (Scapaniaceae, Jungermanniales). PMID:33763579
Complete mitochondrial genome of the H3 haplotype Argentine ant Linepithema humile (Mayr, 1868) (Formicidae; Hymenoptera). PMID:33763578
Complete mitochondrial genome of the hybrid grouper Hyporthodus septemfasciatus (♀)×Epinephelus moara (♂) (Perciformes, Serranidae) and results of a phylogenetic analysis. PMID:33763574
Complete chloroplast genome of a rare and endangered plant species Osteomeles subrotunda: genomic features and phylogenetic relationships with other Rosaceae plants. PMID:33763572
The complete molecular sequence of chloroplast genome of Lablab purpureus (L.) Sweet. PMID:33763570
The complete chloroplast genome of Catalpa fargesii Bur. f. duclouxii (Dode) Gilmour. PMID:33763566
Characteration and comparative analysis of the whole chloroplast genomes of five common millet (Panicum miliaceum). PMID:33763565
The complete chloroplast genome sequence of Ventilago leiocarpa Benth. PMID:33763564
Characteristics and phylogenetic analysis of the complete chloroplast genome of Paeonia japonica (Paeoniaceae). PMID:33763563
Complete chloroplast genome sequence of Salix sinopurpurea (Salicaceae). PMID:33763559
Complete plastid genome sequence of Oberonioides microtatantha (Schltr.) Szlach. (Orchidaceae), an endemic herb in China. PMID:33763556
The complete mitochondrial genome of Monochamus dubius Gahan (Coleoptera: Cerambycidae). PMID:33763554
The complete chloroplast genome sequence of Populus szechuanica, a medicinal plant for child anesthesia application. PMID:33763553
The complete chloroplast genome of Chimonobambusa purpurea (Bambusatae). PMID:33763551
The complete chloroplast genome of Lagerstroemia balansae, an endangered species of genus Lagerstroemia native to China. PMID:33763549
The complete plastid genome sequence of Dracaena fragrans (L.) Ker Gawl. (Asparagaceae). PMID:33763538
Genetic Identification of Edible Bird's Nest in Thailand Based on ARMS-PCR. PMID:33763113
Ancient Origin of Two 5S rDNA Families Dominating in the Genus Rosa and Their Behavior in the Canina-Type Meiosis. PMID:33763100
Comparative in silico genome analysis of Clostridium perfringens unravels stable phylogroups with different genome characteristics and pathogenic potential. PMID:33762628
Archaeogenomic distinctiveness of the Isthmo-Colombian area. PMID:33761327
The molecular phylogeny of Chionaster nivalis reveals a novel order of psychrophilic and globally distributed Tremellomycetes (Fungi, Basidiomycota). PMID:33760841
Reproductive compatibility in Capsicum is not necessarily reflected in genetic or phenotypic similarity between species complexes. PMID:33760824
SARS-CoV-2 variants reveal features critical for replication in primary human cells. PMID:33760807
Transmission, infectivity, and antibody neutralization of an emerging SARS-CoV-2 variant in California carrying a L452R spike protein mutation. PMID:33758899
Mutational escape from the polyclonal antibody response to SARS-CoV-2 infection is largely shaped by a single class of antibodies. PMID:33758856
Recombinant SARS-CoV-2 genomes are currently circulating at low levels. PMID:33758853
Transcriptomic analysis of the trade-off between endurance and burst-performance in the frog Xenopus allofraseri. PMID:33757428
The mitogenome of Ophidascaris wangi isolated from snakes in China. PMID:33754190
The evolution of ancestral and species-specific adaptations in snowfinches at the Qinghai-Tibet Plateau. PMID:33753478
Datura genome reveals duplications of psychoactive alkaloid biosynthetic genes and high mutation rate following tissue culture. PMID:33752605
Characterization of cotton ARF factors and the role of GhARF2b in fiber development. PMID:33752589
Genetic characteristics and phylogenetic analysis of Brazilian clinical strains of Pseudomonas aeruginosa harboring CRISPR/Cas systems. PMID:33751147
Analysis of Paralogons, Origin of the Vertebrate Karyotype, and Ancient Chromosomes Retained in Extant Species. PMID:33751101
Hidden diversity of the most basal tapeworms (Cestoda, Gyrocotylidea), the enigmatic parasites of holocephalans (Chimaeriformes). PMID:33750808
Tooth brushing using toothpaste containing theaflavins reduces the oral pathogenic bacteria in healthy adults. PMID:33747700
Genomic epidemiology of a densely sampled COVID-19 outbreak in China. PMID:33747543
Epidemiological and evolutionary dynamics of influenza B virus in coastal Kenya as revealed by genomic analysis of strains sampled over a single season. PMID:33747542
Retracing Storage Polysaccharide Evolution in Stramenopila. PMID:33747010
Systematics of Lobelioideae (Campanulaceae): review, phylogenetic and biogeographic analyses. PMID:33746531
The myxozoan minicollagen gene repertoire was not simplified by the parasitic lifestyle: computational identification of a novel myxozoan minicollagen gene. PMID:33743585
Structural and functional insights into esterase-mediated macrolide resistance. PMID:33741980
Functional Analysis of Phenazine Biosynthesis Genes in Burkholderia spp. PMID:33741619
Long-term persistence of supernumerary B chromosomes in multiple species of Astyanax fish. PMID:33740955
The iron-sulfur scaffold protein HCF101 unveils the complexity of organellar evolution in SAR, Haptista and Cryptista. PMID:33740894
SARS-CoV-2 outbreak in a tri-national urban area is dominated by a B.1 lineage variant linked to a mass gathering event. PMID:33740028
Rubisco Adaptation Is More Limited by Phylogenetic Constraint Than by Catalytic Trade-off. PMID:33739416
A chromosome-level genome of the spider Trichonephila antipodiana reveals the genetic basis of its polyphagy and evidence of an ancient whole-genome duplication event. PMID:33739402
A more efficient CRISPR-Cas12a variant derived from Lachnospiraceae bacterium MA2020. PMID:33738137
Prolyl Hydroxylase Paralogs in Nicotiana benthamiana Show High Similarity With Regard to Substrate Specificity. PMID:33737944
Genomic Insights Into the Pathogenicity of a Novel Biofilm-Forming Enterococcus sp. Bacteria (Enterococcus lacertideformus) Identified in Reptiles. PMID:33737921
Chloroplast genome sequence of Chongming lima bean (Phaseolus lunatus L.) and comparative analyses with other legume chloroplast genomes. PMID:33736599
Transmission of Severe Acute Respiratory Syndrome Coronavirus 2 during Border Quarantine and Air Travel, New Zealand (Aotearoa). PMID:33734063
Evolution of DNA packaging in gene transfer agents. PMID:33732503
Machine Learning Prediction and Experimental Validation of Antigenic Drift in H3 Influenza A Viruses in Swine. PMID:33731472
Evolutionary Rates are Correlated Between Buchnera Endosymbionts and the Mitochondrial Genomes of Their Aphid Hosts. PMID:33730185
Broken, silent, and in hiding: tamed endogenous pararetroviruses escape elimination from the genome of sugar beet (Beta vulgaris). PMID:33729490
Conspicuousness, phylogenetic structure, and origins of Müllerian mimicry in 4000 lycid beetles from all zoogeographic regions. PMID:33727670
Detection of horizontal gene transfer in the genome of the choanoflagellate Salpingoeca rosetta. PMID:33727612
Genomics and Transcriptomics of the green mussel explain the durability of its byssus. PMID:33727571
EMPress Enables Tree-Guided, Interactive, and Exploratory Analyses of Multi-omic Data Sets. PMID:33727399
The Predicted Mannosyltransferase GT69-2 Antagonizes RFW-1 To Regulate Cell Fusion in Neurospora crassa. PMID:33727349
Sareomycetes: more diverse than meets the eye. PMID:33726866
Two homologs of the Cat8 transcription factor are involved in the regulation of ethanol utilization in Komagataella phaffii. PMID:33725138
Ancient DNA reveals the lost domestication history of South American camelids in Northern Chile and across the Andes. PMID:33724183
Catalase impairs Leishmania mexicana development and virulence. PMID:33724149
Host-produced ethylene is required for marked cell expansion and endoreduplication in dodder search hyphae. PMID:33721891
Deletion of a Golgi protein in Trypanosoma cruzi reveals a critical role for Mn2+ in protein glycosylation needed for host cell invasion and intracellular replication. PMID:33720977
An evolutionarily diverged mitochondrial protein controls biofilm growth and virulence in Candida albicans. PMID:33720927
Pinpointing the PRDM9-PRDM7 Gene Duplication Event During Primate Divergence. PMID:33719332
The complete mitochondrial genome of Scapania ampliata Steph., 1897 (Scapaniaceae, Jungermanniales). PMID:33718609
Prevention and Control of Pathogens Based on Big-Data Mining and Visualization Analysis. PMID:33718431
Comparative analysis of complete plastid genomes from Lilium lankongense Franchet and its closely related species and screening of Lilium-specific primers. PMID:33717697
Putative carboxylesterase gene identification and their expression patterns in Hyphantria cunea (Drury). PMID:33717687
Holocene chloroplast genetic variation of shrubs (Alnus alnobetula, Betula nana, Salix sp.) at the siberian tundra-taiga ecotone inferred from modern chloroplast genome assembly and sedimentary ancient DNA analyses. PMID:33717447
Phylogenetic relations and mitogenome-wide similarity metrics reveal monophyly of Penaeus sensu lato. PMID:33717440
A Proteome-Wide Immunoinformatics Tool to Accelerate T-Cell Epitope Discovery and Vaccine Design in the Context of Emerging Infectious Diseases: An Ethnicity-Oriented Approach. PMID:33717077
Description of a new species of the genus Ameletus Eaton, 1885 (Ephemeroptera, Ameletidae) from Yunnan, China. PMID:33716541
Genetic and biological characterisation of three cryptic Eimeria operational taxonomic units that infect chickens (Gallus gallus domesticus). PMID:33713650
Shotgun transcriptome, spatial omics, and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions. PMID:33712587
Deep-sea microbes as tools to refine the rules of innate immune pattern recognition. PMID:33712473
A flexible repertoire of transcription factor binding sites and a diversity threshold determines enhancer activity in embryonic stem cells. PMID:33712417
Natural selection in the evolution of SARS-CoV-2 in bats created a generalist virus and highly capable human pathogen. PMID:33711012
Genome sequence and genetic diversity analysis of an under-domesticated orphan crop, white fonio (Digitaria exilis). PMID:33710327
The cyanobacterium Prochlorococcus has divergent light-harvesting antennae and may have evolved in a low-oxygen ocean. PMID:33707213
Molecular characterization of the conoid complex in Toxoplasma reveals its conservation in all apicomplexans, including Plasmodium species. PMID:33705380
The R2R3-MYB transcription factor MtMYB134 orchestrates flavonol biosynthesis in Medicago truncatula. PMID:33704646
Interrogating Phylogenetic Discordance Resolves Deep Splits in the Rapid Radiation of Old World Fruit Bats (Chiroptera: Pteropodidae). PMID:33693838
Primary Metabolism co-Opted for Defensive Chemical Production in the Carabid Beetle, Harpalus pensylvanicus. PMID:33689113
SARS-CoV-2 501Y.V2 (B.1.351) elicits cross-reactive neutralizing antibodies. PMID:33688657
Phylogenetic Distribution of Secondary Metabolites in the Bacillus subtilis Species Complex. PMID:33688015
A Novel Small RNA Promotes Motility and Virulence of Enterohemorrhagic Escherichia coli O157:H7 in Response to Ammonium. PMID:33688013
Curvularia lunata as new causal pathogen of tomato early blight disease in Egypt. PMID:33687701
Henneguya michiganensis n. sp. (Cnidaria: Myxosporea) from the gills of muskellunge Esox masquinongy Mitchill(Esociformes: Esocidae). PMID:33687653
Viral evolution sustains a dengue outbreak of enhanced severity. PMID:33686914
Potency of olorofim (F901318) compared to contemporary antifungal agents against clinical Aspergillus fumigatus isolates, and review of azole resistance phenotype and genotype epidemiology in China. PMID:33685896
Distinct plastid fructose bisphosphate aldolases function in photosynthetic and non-photosynthetic metabolism in Arabidopsis. PMID:33684221
The very early evolution of protein translocation across membranes. PMID:33684113
Dynamic Changes in the Nasal Microbiome Associated With Disease Activity in Patients With Granulomatosis With Polyangiitis. PMID:33682371
A De Novo Transcriptome Assembly of Ceratopteris richardii Provides Insights into the Evolutionary Dynamics of Complex Gene Families in Land Plants. PMID:33681974
The complete chloroplast genomes of two species from Capparaceae. PMID:33681464
Assessment of Cytospora Isolates From Conifer Cankers in China, With the Descriptions of Four New Cytospora Species. PMID:33679851
Metabolic Potential, Ecology and Presence of Associated Bacteria Is Reflected in Genomic Diversity of Mucoromycotina. PMID:33679672
Metagenomic Analysis Reveals Microbial Community Structure and Metabolic Potential for Nitrogen Acquisition in the Oligotrophic Surface Water of the Indian Ocean. PMID:33679623
Evolutionary Dynamics and Dissemination Pattern of the SARS-CoV-2 Lineage B.1.1.33 During the Early Pandemic Phase in Brazil. PMID:33679622
Chromosome-level genome assembly and structural variant analysis of two laboratory yeast strains from the Peterhof Genetic Collection lineage. PMID:33677552
The extent of molecular variation in novel SARS-CoV-2 after the six-month global spread. PMID:33677109
Mitochondrial Genome Evolution in Pelagophyte Algae. PMID:33675661
Continental-Scale Gene Flow Prevents Allopatric Divergence of Pelagic Freshwater Bacteria. PMID:33674852
Conservation of the glycogen metabolism pathway underlines a pivotal function of storage polysaccharides in Chlamydiae. PMID:33674787
IMA genome - F14 : Draft genome sequences of Penicillium roqueforti, Fusarium sororula, Chrysoporthe puriensis, and Chalaropsis populi. PMID:33673862
Vector-Borne Blood Parasites of the Great-Tailed Grackle (Quiscalus mexicanus) in East-Central Texas, USA. PMID:33673608
Two Haplotypes of Aedes aegypti Detected by ND4 Mitochondrial Marker in Three Regions of Ecuador. PMID:33673456
Plant HKT Channels: An Updated View on Structure, Function and Gene Regulation. PMID:33672907
Recent Advances in Bunyavirus Glycoprotein Research: Precursor Processing, Receptor Binding and Structure. PMID:33672327
On the Prevalence and Potential Functionality of an Intrinsic Disorder in the MERS-CoV Proteome. PMID:33671602
Examination of Staphylococcus aureus Prophages Circulating in Egypt. PMID:33671574
Structure Unveils Relationships between RNA Virus Polymerases. PMID:33671332
The Ubiquity and Development-Related Abundance Dynamics of Ophiocordyceps Fungi in Soft Scale Insects. PMID:33669243
Clade-Specific Plastid Inheritance Patterns Including Frequent Biparental Inheritance in Passiflora Interspecific Crosses. PMID:33668897
Genetic and Phenotypic Characterization of in-Host Developed Azole-Resistant Aspergillus flavus Isolates. PMID:33668871
T4-like Bacteriophages Isolated from Pig Stools Infect Yersinia pseudotuberculosis and Yersinia pestis Using LPS and OmpF as Receptors. PMID:33668618
Escherichia coli Isolated from Diabetic Foot Osteomyelitis: Clonal Diversity, Resistance Profile, Virulence Potential, and Genome Adaptation. PMID:33668594
Comparative analysis of Phytophthora genomes reveals oomycete pathogenesis in crops. PMID:33665461
Extremely low nucleotide diversity among thirty-six new chloroplast genome sequences from Aldama (Heliantheae, Asteraceae) and comparative chloroplast genomics analyses with closely related genera. PMID:33665028
Comparative transcriptomics of ice-crawlers demonstrates cold specialization constrains niche evolution in a relict lineage. PMID:33664782
Cryptophyllium, the hidden leaf insects - descriptions of a new leaf insect genus and thirteen species from the former celebicum species group (Phasmatodea, Phylliidae). PMID:33664609
A refined proposal for the origin of dogs: the case study of Gnirshöhle, a Magdalenian cave site. PMID:33664287
Identification of a SARS-CoV-2 Lineage B1.1.7 Virus in New York following Return Travel from the United Kingdom. PMID:33664151
Convergent Biochemical Pathways for Xanthine Alkaloid Production in Plants Evolved from Ancestral Enzymes with Different Catalytic Properties. PMID:33662138
Genomic characterization and evolution of SARS-CoV-2 of a Canadian population. PMID:33662015
Complete mitochondrial genome of Spodoptera littoralis (Lepidoptera: Noctuidae) from Egypt. PMID:33659701
Characterization of the complete mitochondrial genome of Sogatella kolophon (Hemiptera: Delphacidae). PMID:33659688
Complete chloroplast genome sequence and phylogenetic analysis of Populus deltoides Caihong. PMID:33659687
Characterization of the mitochondrial genome of Spodoptera exempta (Lepidoptera: Noctuidae) from South Africa. PMID:33659681
The complete chloroplast genome of a medical herb, Potentilla parvifolia Fisch. (Rosaceae), from Qinghai-Tibet Plateau in China. PMID:33659674
Chloroplast phylogenomic analysis provides insights into the evolution of Paris liiana sp. nov. PMID:33659673
The complete chloroplast genome sequence of Beckmannia syzigachne. PMID:33659672
The complete chloroplast genome of Isodon rubescens, a traditional Chinese herb. PMID:33659670
The complete chloroplast genome sequence of medicinal plant: Dianthus chinensis (Caryophyllaceae). PMID:33659666
The complete chloroplast genome sequence of Sibiraea angustata, a traditional Chinese medicine in Sichuan Province, China. PMID:33659664
Characterization of the chloroplast genome of Zingiber mioga (Thunb.) Rosc. PMID:33659662
Complete chloroplast genome of a wild-type Gardenia jasminoides ellis (rubiaceae) adapted to island climate. PMID:33659660
A gene-rich and compact chloroplast genome of the green alga Nephroselmis pyriformis (N.Carter) Ettl 1982 from the shores of Mersin (Eastern Mediterranean Sea). PMID:33659658
The complete chloroplast genome of Zanthoxylum piasezkii Maxim. (Rutaceae) and its phylogenetic analysis. PMID:33659657
The complete chloroplast genome sequence of Anemone reflexa (Ranunculaceae). PMID:33659656
The complete chloroplast genome of Geum macrophyllum (Rosaceae: Colurieae). PMID:33659653
The complete chloroplast genome of Chinese medicine cultivar species of Rehmannia glutinosa (Orobanchaceae). PMID:33659651
Complete chloroplast genome sequences of Corydalis edulis and Corydalis shensiana (Papaveraceae). PMID:33659648
The complete chloroplast genome sequence of herb Nardostachys jatamans (family: Valerianaceae) in China. PMID:33659647
Two complete chloroplast genomes of an endangered orchid species, Pelatantheria scolopendrifolia (Orchidaceae), in Korea. PMID:33659643
High-resolution and Deep Phylogenetic Reconstruction of Ancestral States from Large Transcriptomic Data Sets. PMID:33659537
Predicting transcriptional responses to cold stress across plant species. PMID:33658387
Whole-Genome Enrichment and Sequencing of Chlamydia trachomatis Directly from Patient Clinical Vaginal and Rectal Swabs. PMID:33658279
Trophic specialisation reflected by radular tooth material properties in an "ancient" Lake Tanganyikan gastropod species flock. PMID:33658005
A novel family of secreted insect proteins linked to plant gall development. PMID:33657407
Mining oomycete proteomes for metalloproteases leads to identification of candidate virulence factors in Phytophthora infestans. PMID:33657266
Complete map of SARS-CoV-2 RBD mutations that escape the monoclonal antibody LY-CoV555 and its cocktail with LY-CoV016. PMID:33655250
Structural Alignment and Covariation Analysis of RNA Sequences. PMID:33654736
Nutraceuticals Induced Changes in the Broiler Gastrointestinal Tract Microbiota. PMID:33653943
A New Duplex PCR-Assay for the Detection and Identification of Paracoccidioides Species. PMID:33652623
Biological impact of mutually exclusive exon switching. PMID:33651795
Genomic epidemiology of COVID-19 in care homes in the east of England. PMID:33650490
Changing expression patterns of TonB-dependent transporters suggest shifts in polysaccharide consumption over the course of a spring phytoplankton bloom. PMID:33649555
Systematic discovery of pseudomonad genetic factors involved in sensitivity to tailocins. PMID:33649553
Mitogenome analyses elucidate the evolutionary relationships of a probable Eocene wet tropics relic in the xerophile lizard genus Acanthodactylus. PMID:33649347
Genome editing reveals fitness effects of a gene for sexual dichromatism in Sulawesian fishes. PMID:33649298
Evolution of Ycf54-independent chlorophyll biosynthesis in cyanobacteria. PMID:33649240
Genome Sequencing of a Historic Staphylococcus aureus Collection Reveals New Enterotoxin Genes and Sheds Light on the Evolution and Genomic Organization of This Key Virulence Gene Family. PMID:33649144
Genomic characterization of 99 viruses from the bunyavirus families Nairoviridae, Peribunyaviridae, and Phenuiviridae, including 35 previously unsequenced viruses. PMID:33647063
Phylogeny and Strain Typing of Wolbachia from Yamatotettix flavovittatus Matsumura Leafhoppers. PMID:33646378
The complete chloroplast genome of Plateau herb Chesneya acaulis (Fabaceae). PMID:33644396
The complete chloroplast genome sequence of Gentiana atropurpurea and phylogenetic analysis. PMID:33644393
The complete mitochondrial genome of the far Eastern myotis: Myotis bombinus Thomas, 1906 in mainland of Korea (Chiroptera, Vespertilionidae). PMID:33644388
The complete mitogenome of Leptestheria brevirostris Barnard, 1924, a rock pool clam shrimp (Branchiopoda: Spinicaudata) from Central District, Botswana. PMID:33644386
The complete mitochondrial genome of Anomaloglossus baeobatrachus (Amphibia: Anura: Aromobatidae). PMID:33644376
Whole genome sequencing of Streptomyces actuosus ISP-5337, Streptomyces sioyaensis B-5408, and Actinospica acidiphila B-2296 reveals secondary metabolomes with antibiotic potential. PMID:33643857
Comparative Analyses of Euonymus Chloroplast Genomes: Genetic Structure, Screening for Loci With Suitable Polymorphism, Positive Selection Genes, and Phylogenetic Relationships Within Celastrineae. PMID:33643327
The Mitogenomes of Ophiostoma minus and Ophiostoma piliferum and Comparisons With Other Members of the Ophiostomatales. PMID:33643245
Early Diffusion of SARS-CoV-2 Infection in the Inner Area of the Italian Sardinia Island. PMID:33643227
A new species in the Mycosphaerellaceae from Cecidomyiidae leaf galls on Avicennia marina in South Africa. PMID:33641038
Complete genome sequencing of Peyer's patches-derived Lactobacillus taiwanensis CLG01, a potential probiotic with antibacterial and immunomodulatory activity. PMID:33639835
A native, highly active Tc1/mariner transposon from zebrafish (ZB) offers an efficient genetic manipulation tool for vertebrates. PMID:33638993
Genomic Evidence for Convergent Molecular Adaptation in Electric Fishes. PMID:33638979
Hierarchical spatial sampling reveals factors influencing arbuscular mycorrhizal fungus diversity in Côte d'Ivoire cocoa plantations. PMID:33638731
The McdAB system positions α-carboxysomes in proteobacteria. PMID:33638215
Comparative chloroplast genomes: insights into the evolution of the chloroplast genome of Camellia sinensis and the phylogeny of Camellia. PMID:33637038
Mitochondrial Genome Structures and Phylogenetic Analyses of Two Tropical Characidae Fishes. PMID:33633787
Evolution of Protein-Mediated Biomineralization in Scleractinian Corals. PMID:33633782
Population Genomic Analysis of Listeria monocytogenes From Food Reveals Substrate-Specific Genome Variation. PMID:33633707
Re-description of the loach species Leptobotia citrauratea (Teleostei, Botiidae), with the description of L. brachycephala from southern Zhejiang Province, China. PMID:33633484
Interaction dynamics and virus-host range for estuarine actinophages captured by epicPCR. PMID:33633401
Helicobacter pylori type 4 secretion systems as gastroduodenal disease markers. PMID:33633144
Haplotype-resolved diverse human genomes and integrated analysis of structural variation. PMID:33632895
In-Frame 12-Nucleotide Deletion within Open Reading Frame 3a in a SARS-CoV-2 Strain Isolated from a Patient Hospitalized with COVID-19. PMID:33632859
Pervasive transmission of E484K and emergence of VUI-NP13L with evidence of SARS-CoV-2 co-infection events by two different lineages in Rio Grande do Sul, Brazil. PMID:33631222
Genomic relatedness and clinical significance of Streptococcus mitis strains isolated from the urogenital tract of sexual partners. PMID:33629947
The complete mitochondrial genome of Arhopalus unicolor (Coleoptera: Cerambycidae). PMID:33628943
The complete mitochondrial genome of Gymnobelideus leadbeateri (Mammalia: Petauridae). PMID:33628940
The first complete mitochondrial genome sequence of Cacopsylla citrisuga (Yang & Li), a new insect vector of Huanglongbing in Yunnan Province, China. PMID:33628935
The complete chloroplast genome of Zoysia matrella (L.) Merr. isolated in Korea (Poaceae): investigation of intraspecific variations on chloroplast genomes. PMID:33628934
The complete chloroplast genome of Phyllostachys heteroclada f. solida (Poaceae). PMID:33628931
Complete mitochondrial genome of the drywood termite Cryptotermes havilandi (Isoptera: Kalotermitidae). PMID:33628917
The complete chloroplast genome of Cannabis sativa variety Yunma 7. PMID:33628916
The mitochondrial genome of Xanthochlorus tibetensis (Diptera: Dolichopodidae). PMID:33628909
Complete mitochondrial genome of the jet ant Lasius spathepus Wheeler, W.M., 1910 (Formicidae; Hymenoptera). PMID:33628905
The complete chloroplast genome of Passiflora caerulea, a tropical fruit with a distinctive aroma. PMID:33628899
The complete chloroplast genome and phylogenetic analysis of Nephelium lappaceum (rambutan). PMID:33628898
Characteristic and phylogenetic analyses of chloroplast genome for Ephedra monosperma (Ephedraceae), an important medicinal species. PMID:33628897
The complete chloroplast genome sequence of Potentilla tanacetifolia Willd. ex Schltdl. PMID:33628895
The complete chloroplast genome sequence of Michelia balansae var. balansae (Aug. Candolle) Dandy, a timber and spices species in Magnoliaceae. PMID:33628890
The complete chloroplast genome sequences of Trapa quadrispinosa and T. bicornis var. taiwanensis. PMID:33628884
The complete chloroplast genome sequence of Alniphyllum fortunei (Styracaceae) from Fujian, China. PMID:33628882
The complete chloroplast genome of Thalictrum baicalense Turcz. ex Ledeb. PMID:33628881
The complete chloroplast genome of Lemmaphyllum intermedium, a valuable medicinal fern. PMID:33628877
The complete chloroplast genome of Chinese medicinal herb Belamcanda chinensis (L.) Redouté (Iridaceae). PMID:33628873
Sequencing and comparative analysis of the chloroplast genome of Ribes odoratum provide insights for marker development and phylogenetics in Ribes. PMID:33627964
Molecular bases of an alternative dual-enzyme system for light color acclimation of marine Synechococcus cyanobacteria. PMID:33627406
Retortamonads from vertebrate hosts share features of anaerobic metabolism and pre-adaptations to parasitism with diplomonads. PMID:33626397
Evolution, structure and emerging roles of C1ORF112 in DNA replication, DNA damage responses, and cancer. PMID:33625522
Insertion of plastidic β-barrel proteins into the outer envelopes of plastids involves an intermembrane space intermediate formed with Toc75-V/OEP80. PMID:33624803
Fossil palm reading: using fruits to reveal the deep roots of palm diversity. PMID:33624301
Virome composition in marine fish revealed by meta-transcriptomics. PMID:33623709
Discovery and surveillance of viruses from salmon in British Columbia using viral immune-response biomarkers, metatranscriptomics, and high-throughput RT-PCR. PMID:33623707
Comparative Genomics and Integrated Network Approach Unveiled Undirected Phylogeny Patterns, Co-mutational Hot Spots, Functional Cross Talk, and Regulatory Interactions in SARS-CoV-2. PMID:33622851
Positive selection and gene duplications in tumour suppressor genes reveal clues about how cetaceans resist cancer. PMID:33622125
Characterisation of an Australian fowlpox virus carrying a near-full-length provirus of reticuloendotheliosis virus. PMID:33620554
Comprehensive in silico survey of the Mycolicibacterium mobilome reveals an as yet underexplored diversity. PMID:33620305
The STI1-domain is a flexible alpha-helical fold with a hydrophobic groove. PMID:33620121
Tomato roots secrete tomatine to modulate the bacterial assemblage of the rhizosphere. PMID:33619554
In silico detection of SARS-CoV-2 specific B-cell epitopes and validation in ELISA for serological diagnosis of COVID-19. PMID:33619344
Human infection with Seoul orthohantavirus in Korea, 2019. PMID:33617577
Applications of Protein Secondary Structure Algorithms in SARS-CoV-2 Research. PMID:33617253
Complex histories of gene flow and a mitochondrial capture event in a nonsister pair of birds. PMID:33615597
Incomplete lineage sorting and ancient admixture, and speciation without morphological change in ghost-worm cryptic species. PMID:33614296
Comparative analysis of the complete plastid genomes of Mangifera species and gene transfer between plastid and mitochondrial genomes. PMID:33614280
Identification of novel avian and mammalian deltaviruses provides new insights into deltavirus evolution. PMID:33614159
Draft genome sequences of three filamentous cyanobacteria isolated from brackish habitats. PMID:33613774
SARS-CoV-2 Genomes From Oklahoma, United States. PMID:33613621
Resolving Recalcitrant Clades in the Pantropical Ochnaceae: Insights From Comparative Phylogenomics of Plastome and Nuclear Genomic Data Derived From Targeted Sequencing. PMID:33613613
Overexpression of DBF-Interactor Protein 6 Containing an R3H Domain Enhances Drought Tolerance in Populus L. (Populus tomentosa). PMID:33613597
Pollen Streptomyces Produce Antibiotic That Inhibits the Honey Bee Pathogen Paenibacillus larvae. PMID:33613504
Species Diversity and Molecular Phylogeny of Cyanosporus (Polyporales, Basidiomycota). PMID:33613501
Metabolic Potential for Reductive Acetogenesis and a Novel Energy-Converting [NiFe] Hydrogenase in Bathyarchaeia From Termite Guts - A Genome-Centric Analysis. PMID:33613473
Full-Length 16S rRNA and ITS Gene Sequencing Revealed Rich Microbial Flora in Roots of Cycas spp. in China. PMID:33613025
Molecular basis of tail-anchored integral membrane protein recognition by the cochaperone Sgt2. PMID:33610544
Chromosome-scale assembly of the genome of Salix dunnii reveals a male-heterogametic sex determination system on chromosome 7. PMID:33609314
Soybean anthracnose caused by Colletotrichum species: Current status and future prospects. PMID:33609073
Expression of the qepA1 gene is induced under antibiotic exposure. PMID:33608713
Two PAAR Proteins with Different C-Terminal Extended Domains Have Distinct Ecological Functions in Myxococcus xanthus. PMID:33608292
A genome-scale phylogeny of the kingdom Fungi. PMID:33607033
Metagenomic Analysis of the Gut Microbiota of Wild Mice, a Newly Identified Reservoir of Campylobacter. PMID:33604305
Wide geographic distribution of overlooked parasites: Rare Microsporidia in Gammarus balcanicus, a species complex with a high rate of endemism. PMID:33604238
Local dynamics of a white syndrome outbreak and changes in the microbial community associated with colonies of the scleractinian brain coral Pseudodiploria strigosa. PMID:33604172
PANDAA intentionally violates conventional qPCR design to enable durable, mismatch-agnostic detection of highly polymorphic pathogens. PMID:33603155
Comparative genomics reveals broad genetic diversity, extensive recombination and nascent ecological adaptation in Micrococcus luteus. PMID:33602135
High-quality carnivoran genomes from roadkill samples enable comparative species delineation in aardwolf and bat-eared fox. PMID:33599612
NGSpeciesID: DNA barcode and amplicon consensus generation from long-read sequencing data. PMID:33598139
The dysbiosis of ovine foot microbiome during the development and treatment of contagious ovine digital dermatitis. PMID:33597028
Genomic surveillance of SARS-CoV-2 during the first year of the pandemic in the Bronx enabled clinical and epidemiological inference. PMID:33594384
Early introductions and community transmission of SARS-CoV-2 variant B.1.1.7 in the United States. PMID:33594373
Surface-aerosol stability and pathogenicity of diverse MERS-CoV strains from 2012 - 2018. PMID:33594367
Environmental palaeogenomic reconstruction of an Ice Age algal population. PMID:33594237
Five animal phyla in glacier ice reveal unprecedented biodiversity in New Zealand's Southern Alps. PMID:33594128
Multiple Pathways to Homothallism in Closely Related Yeast Lineages in the Basidiomycota. PMID:33593979
Comprehensive mapping of mutations in the SARS-CoV-2 receptor-binding domain that affect recognition by polyclonal human plasma antibodies. PMID:33592168
Data science in unveiling COVID-19 pathogenesis and diagnosis: evolutionary origin to drug repurposing. PMID:33592108
Genetic and epigenetic variation in transposable element expression responses to abiotic stress in maize. PMID:33591319
Rapid molecular evolution of Spiroplasma symbionts of Drosophila. PMID:33591248
Two Complete Mitochondrial Genomes From Leuctridae (Plecoptera: Nemouroidea): Implications for the Phylogenetic Relationships Among Stoneflies. PMID:33590866
Hamster PIWI proteins bind to piRNAs with stage-specific size variations during oocyte maturation. PMID:33590099
Dynamics of Ku and bacterial non-homologous end-joining characterized using single DNA molecule analysis. PMID:33590005
Developmental fates of shark head cavities reveal mesodermal contributions to tendon progenitor cells in extraocular muscles. PMID:33588955
cognac: rapid generation of concatenated gene alignments for phylogenetic inference from large, bacterial whole genome sequencing datasets. PMID:33588753
Global Patterns of Recombination across Human Viruses. PMID:33585889
Genetic Diversity of African Trypanosomes in Tsetse Flies and Cattle From the Kafue Ecosystem. PMID:33585616
Tonsil Mycobiome in PFAPA (Periodic Fever, Aphthous Stomatitis, Pharyngitis, Adenitis) Syndrome: A Case-Control Study. PMID:33585283
Oral Microbiome Analysis in Prospective Genome Cohort Studies of the Tohoku Medical Megabank Project. PMID:33585276
Evolutionary analysis and lineage designation of SARS-CoV-2 genomes. PMID:33585048
Transfection of Arctic Bryum sp. KMR5045 as a Model for Genetic Engineering of Cold-Tolerant Mosses. PMID:33584753
Comparative Chloroplast Genomics of Corydalis Species (Papaveraceae): Evolutionary Perspectives on Their Unusual Large Scale Rearrangements. PMID:33584746
Indicator Regularized Non-Negative Matrix Factorization Method-Based Drug Repurposing for COVID-19. PMID:33584672
Yet Another Quick Assembly, Analysis and Trimming Tool (YAQAAT): A Server for the Automated Assembly and Analysis of Sanger Sequencing Data. PMID:33584150
Functional alterations caused by mutations reflect evolutionary trends of SARS-CoV-2. PMID:33580783
Prostaglandin E2 promotes intestinal inflammation via inhibiting microbiota-dependent regulatory T cells. PMID:33579710
Pathogenic Determinants of the Mycobacterium kansasii Complex: An Unsuspected Role for Distributive Conjugal Transfer. PMID:33578772
PanACoTA: a modular tool for massive microbial comparative genomics. PMID:33575648
Accelerating phylogeny-aware alignment with indel evolution using short time Fourier transform. PMID:33575636
aliFreeFoldMulti: alignment-free method to predict secondary structures of multiple RNA homologs. PMID:33575631
Third-generation sequencing-based mapping and visualization of single nucleotide polymorphism, meiotic recombination, illegitimate mutation and repeat-induced point mutation. PMID:33575607
Expanding the type IIB DNA topoisomerase family: identification of new topoisomerase and topoisomerase-like proteins in mobile genetic elements. PMID:33575570
Taxonomic resolution of the ribosomal RNA operon in bacteria: implications for its use with long-read sequencing. PMID:33575567
Characterization of Two Macrolide Resistance-Related Genes in Multidrug-Resistant Pseudomonas aeruginosa Isolates. PMID:33574864
Mangrove tree (Avicennia marina): insight into chloroplast genome evolutionary divergence and its comparison with related species from family Acanthaceae. PMID:33574434
Non-collinear Hox gene expression in bivalves and the evolution of morphological novelties in mollusks. PMID:33574385
The evolutionary history of manatees told by their mitogenomes. PMID:33574363
Complete Chloroplast Genome of Abutilon fruticosum: Genome Structure, Comparative and Phylogenetic Analysis. PMID:33573201
Parasitoid Distribution and Parasitism of the Fall Armyworm Spodoptera frugiperda (Lepidoptera: Noctuidae) in Different Maize Producing Regions of Uganda. PMID:33573080
Emergence of a Novel Pathogenic Poxvirus Infection in the Endangered Green Sea Turtle (Chelonia mydas) Highlights a Key Threatening Process. PMID:33572619
Characterization and Comparative Analysis of Complete Mitogenomes of Three Cacatua Parrots (Psittaciformes: Cacatuidae). PMID:33572592
Causes and Consequences of Bacteriophage Diversification via Genetic Exchanges across Lifestyles and Bacterial Taxa. PMID:33570565
A High-Quality Reference Genome for a Parasitic Bivalve with Doubly Uniparental Inheritance (Bivalvia: Unionida). PMID:33570560
Three new species of subterranean amphipods (Pseudocrangonyctidae: Pseudocrangonyx) from limestone caves in South Korea. PMID:33569255
Delimiting the genera of the Ficinia Clade (Cypereae, Cyperaceae) based on molecular phylogenetic data. PMID:33569253
Recent African strains of Zika virus display higher transmissibility and fetal pathogenicity than Asian strains. PMID:33568638
H7N7 Avian Influenza Virus Mutation from Low to High Pathogenicity on a Layer Chicken Farm in the UK. PMID:33567525
An epidemiological surveillance of hand foot and mouth disease in paediatric patients and in community: A Singapore retrospective cohort study, 2013-2018. PMID:33566802
Complete nucleotide sequence of chrysanthemum mosaic-associated virus, a novel emaravirus infecting chrysanthemum. PMID:33566195
Phylogenomics Identifies a New Major Subgroup of Apicomplexans, Marosporida class nov., with Extreme Apicoplast Genome Reduction. PMID:33566096
Donor to recipient transmission of SARS-CoV-2 by lung transplantation despite negative donor upper respiratory tract testing. PMID:33565705
Taxonomic Sampling and Rare Genomic Changes Overcome Long-Branch Attraction in the Phylogenetic Placement of Pseudoscorpions. PMID:33565584
Novel Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV2) and Other Coronaviruses: A Genome-wide Comparative Annotation and Analysis. PMID:33564990
Light environment drives evolution of color vision genes in butterflies and moths. PMID:33564115
Depth-discrete metagenomics reveals the roles of microbes in biogeochemical cycling in the tropical freshwater Lake Tanganyika. PMID:33564113
Microbiota Assessments for the Identification and Confirmation of Slit Defect-Causing Bacteria in Milk and Cheddar Cheese. PMID:33563789
Quantification and evolution of mitochondrial genome rearrangement in Amphibians. PMID:33563214
Population Genomics Insights into the First Wave of COVID-19. PMID:33562321
De novo genome assembly of the tobacco hornworm moth (Manduca sexta). PMID:33561252
Evolution of Chi motifs in Proteobacteria. PMID:33561247
Vagococcus fluvialis isolation and sequencing from urine of healthy cattle. PMID:33561240
Whole-genome sequencing from the New Zealand Saccharomyces cerevisiae population reveals the genomic impacts of novel microbial range expansion. PMID:33561237
De novo assembly of a chromosome-scale reference genome for the northern flicker Colaptes auratus. PMID:33561233
Diverse Eukaryotic CGG-Binding Proteins Produced by Independent Domestications of hAT Transposons. PMID:33561217
Characterization of the complete mitochondrial genome of Notocotylus sp. (Trematoda, Notocotylidae) and its phylogenetic implications. PMID:33559042
Intracellular bacteria are common and taxonomically diverse in cultured and in hospite algal endosymbionts of coral reefs. PMID:33558689
The origin of the expressed retrotransposed gene ACTBL2 and its influence on human melanoma cells' motility and focal adhesion formation. PMID:33558623
Beyond Drosophila: resolving the rapid radiation of schizophoran flies with phylotranscriptomics. PMID:33557827
SARS-CoV-2 mutation 614G creates an elastase cleavage site enhancing its spread in high AAT-deficient regions. PMID:33556558
Wide range of metabolic adaptations to the acquisition of the Calvin cycle revealed by comparison of microbial genomes. PMID:33556078
The complete plastid genome of Aletris megalantha (Nartheciaceae), an endemic species from Yunnan Province of China. PMID:33553648
Complete chloroplast genome of Engelhardtia fenzlii (Juglandaceae). PMID:33553647
The complete chloroplast genome of Scurrula chingii (W.C. Cheng) H.S. Kiu (Loranthaceae), a hemiparasitic shrub. PMID:33553646
Characterization of the complete plastid genome of Lysimachia christinae Hance (Primulaceae). PMID:33553641
Characterization of the complete chloroplast genome of Canavalia gladiata. PMID:33553637
The first complete chloroplast genome of Drynaria acuminata (Polypodiaceae), a local rare fern species. PMID:33553636
The complete chloroplast genome sequence of Sargentodoxa cuneata: genome structure and genomic resources. PMID:33553634
Characterization of the complete chloroplast genome of Carya hunanensis W. C. Cheng & R. H. Chang. PMID:33553631
A target enrichment probe set for resolving the flagellate land plant tree of life. PMID:33552748
The Pontastacus leptodactylus (Astacidae) Repeatome Provides Insight Into Genome Evolution and Reveals Remarkable Diversity of Satellite DNA. PMID:33552130
A Longitudinal Study of the Human Oropharynx Microbiota Over Time Reveals a Common Core and Significant Variations With Self-Reported Disease. PMID:33552004
Genetic conservation of SARS-CoV-2 RNA replication complex in globally circulating isolates and recently emerged variants from humans and minks suggests minimal pre-existing resistance to remdesivir. PMID:33549572
Adults with Prader-Willi syndrome exhibit a unique microbiota profile. PMID:33549146
Genetics of nodulation in Aeschynomene evenia uncovers mechanisms of the rhizobium-legume symbiosis. PMID:33547303
Phylogenetic analyses suggest centipede venom arsenals were repeatedly stocked by horizontal gene transfer. PMID:33547293
SARS-CoV-2 evolution during treatment of chronic infection. PMID:33545711
Characteristics of complete chloroplast genome of a high-quality forage on Qinghai-Tibet Plateau, Medicago archiducis-nicolai Sirj. (Fabaceae：Trifolieae). PMID:33542955
Complete Genome Sequence of a Phapecoctavirus Isolated from a Pigeon Cloacal Swab Sample. PMID:33541888
Ophiocordyceps salganeicola, a parasite of social cockroaches in Japan and insights into the evolution of other closely-related Blattodea-associated lineages. PMID:33541437
Chloroplast genome variation and phylogenetic relationships of Atractylodes species. PMID:33541261
The Evolution of Life Modes in Stictidaceae, with Three Novel Taxa. PMID:33540644
Novakomyces olei sp. nov., the First Member of a Novel Taphrinomycotina Lineage. PMID:33540601
Genomic Signatures of SARS-CoV-2 Associated with Patient Mortality. PMID:33540576
An indigenous Saccharomyces uvarum population with high genetic diversity dominates uninoculated Chardonnay fermentations at a Canadian winery. PMID:33539404
Characterization of the complete chloroplast genome of traditional Chinese herb, Solanum japonense Nakai. (Solanaceae). PMID:33537447
Characterization of the complete chloroplast genome of Sansevieria trifasciata var. Laurentii. PMID:33537442
The complete chloroplast genome of Rhododendron platypodum (Ericaceae): an endemic and endangered species from China. PMID:33537441
The complete chloroplast genome of Phyllostachys angusta McClure (Poaceae). PMID:33537438
The complete chloroplast genome of Polygonatum cirrhifolium (Wall.) Royle, a medicine herb. PMID:33537435
The complete chloroplast genome of Lepidium latifolium linnaeus and phylogenetic analysis of brassicaceae. PMID:33537434
The complete chloroplast genome of Chenopodium acuminatum Willd. (Amaranthaceae). PMID:33537433
The complete chloroplast genome sequence of Davidia involucrata. PMID:33537432
The complete chloroplast genome of Castanopsis mekongensis A. Camus (Fagaceae). PMID:33537431
Characterization of the complete chloroplast genome sequence of medicinal plant: Potentilla bifurca (Rosaceae). PMID:33537422
The complete chloroplast genome sequence of Carpinus tibetana (Betulaceae). PMID:33537421
Organization and phylogenetic relationships of the mitochondrial genomes of Speiredonia retorta and other lepidopteran insects. PMID:33536496
First finding of free-living representatives of Prokinetoplastina and their nuclear and mitochondrial genomes. PMID:33536456
Effects of Seasonal Anoxia on the Microbial Community Structure in Demosponges in a Marine Lake in Lough Hyne, Ireland. PMID:33536324
Recurrent deletions in the SARS-CoV-2 spike glycoprotein drive antibody escape. PMID:33536258
Recruitment of archaeal DTD is a key event toward the emergence of land plants. PMID:33536220
A persistent giant algal virus, with a unique morphology, encodes an unprecedented number of genes involved in energy metabolism. PMID:33536167
The leucine-rich repeats in allelic barley MLA immune receptors define specificity towards sequence-unrelated powdery mildew avirulence effectors with a predicted common RNase-like fold. PMID:33534797
The Genomes of Two Billfishes Provide Insights into the Evolution of Endothermy in Teleosts. PMID:33533895
A Comprehensive Evolutionary Scenario of Cell Division and Associated Processes in the Firmicutes. PMID:33533884
Genomic evidence of prevalent hybridization throughout the evolutionary history of the fig-wasp pollination mutualism. PMID:33531484
Host immunity modulates the efficacy of microbiota transplantation for treatment of Clostridioides difficile infection. PMID:33531483
Essential Amino Acid Enrichment and Positive Selection Highlight Endosymbiont's Role in a Global Virus-Vectoring Pest. PMID:33531407
Ecotyping of Anaplasma phagocytophilum from Wild Ungulates and Ticks Shows Circulation of Zoonotic Strains in Northeastern Italy. PMID:33530571
The Mastigamoeba balamuthi Genome and the Nature of the Free-Living Ancestor of Entamoeba. PMID:33528570
A Highly Contiguous Genome Assembly of a Polyphagous Predatory Mite Stratiolaelaps scimitus (Womersley) (Acari: Laelapidae). PMID:33528489
metaXplor: an interactive viral and microbial metagenomic data manager. PMID:33527143
The Origin and Evolution of Antistasin-like Proteins in Leeches (Hirudinida, Clitellata). PMID:33527140
Identification and analysis of splicing quantitative trait loci across multiple tissues in the human genome. PMID:33526779
Phylogenetic Placement and Phylogeography of Large-Flowered Lotus Species (Leguminosae) Formerly Classified in Dorycnium: Evidence of Pre-Pleistocene Differentiation of Western and Eastern Intraspecific Groups. PMID:33525693
The SARS-Coronavirus Infection Cycle: A Survey of Viral Membrane Proteins, Their Functional Interactions and Pathogenesis. PMID:33525632
InpactorDB: A Classified Lineage-Level Plant LTR Retrotransposon Reference Library for Free-Alignment Methods Based on Machine Learning. PMID:33525408
Investigating the Diversity and Host Range of Novel Parvoviruses from North American Ducks Using Epidemiology, Phylogenetics, Genome Structure, and Codon Usage Analysis. PMID:33525386
Genomic Characterisation of a Novel Avipoxvirus Isolated from an Endangered Yellow-Eyed Penguin (Megadyptes antipodes). PMID:33525382
A Conserved Motif in Intracellular Loop 1 Stabilizes the Outward-Facing Conformation of TmrAB. PMID:33524413
The complete plastid genome of Phoenix canariensis Chabaud (Arecaceae) and phylogenetic analysis. PMID:33521288
Complete chloroplast genome sequence and phylogenetic analysis of a wild species of abiu fruit, Pouteria caimito (Ruiz & Pavon.) Radlk. PMID:33521287
The complete chloroplast genome of Campanula takesimana Nakai from Dokdo Island in Korea (Campanulaceae). PMID:33521286
The complete mitochondrial genome of Neurigona zhejiangensis (Diptera: Dolichopodidae). PMID:33521285
The complete chloroplast genomes of Lycopus lucidus and Agastache rugosa, two herbal species in tribe Mentheae of Lamiaceae family. PMID:33521278
The complete chloroplast genome of Scutellaria scordifolia (Labiatae). PMID:33521276
The complete mitochondrial genome of Aphis gossypii Glover, 1877 (Hemiptera: Aphididae) isolated from Leonurus japonicus in Korea. PMID:33521268
Characterization of the complete plastome of Cyperus rotundus L. (Cyperaceae). PMID:33521266
The complete chloroplast genome sequences of Hippuris vulgaris (Plantaginaceae). PMID:33521262
Complete chloroplast genome of a high-quality forage in north China, Medicago ruthenica (Fabaceae：Trifolieae). PMID:33521260
The complete chloroplast genome sequence of the biofuel plant Sacha Inchi, Plukenetia volubilis. PMID:33521257
Regulation of Exocyst Function in Pollen Tube Growth by Phosphorylation of Exocyst Subunit EXO70C2. PMID:33519861
Comparative Analyses of Chloroplast Genomes From 14 Zanthoxylum Species: Identification of Variable DNA Markers and Phylogenetic Relationships Within the Genus. PMID:33519856
The Deep Evolutionary Relationships of the Morphologically Heterogeneous Nolinoideae (Asparagaceae) Revealed by Transcriptome Data. PMID:33519845
Hybridization History and Repetitive Element Content in the Genome of a Homoploid Hybrid, Yucca gloriosa (Asparagaceae). PMID:33519836
Change in Sucrose Cleavage Pattern and Rapid Starch Accumulation Govern Lily Shoot-to-Bulblet Transition in vitro. PMID:33519832
Gemmatimonas groenlandica sp. nov. Is an Aerobic Anoxygenic Phototroph in the Phylum Gemmatimonadetes. PMID:33519753
Analysis of Hepatitis B Virus Genotype D in Greenland Suggests the Presence of a Novel Quasi-Subgenotype. PMID:33519744
Metagenomic Insights Into the Microbial Assemblage Capable of Quorum Sensing and Quorum Quenching in Particulate Organic Matter in the Yellow Sea. PMID:33519743
Drug repositioning based on similarity constrained probabilistic matrix factorization: COVID-19 as a case study. PMID:33519322
Additions to Italian Pleosporinae, including Italica heraclei sp. nov. PMID:33519261
P*R*O*P: a web application to perform phylogenetic analysis considering the effect of gaps. PMID:33516169
Amynthas corticis genome reveals molecular mechanisms behind global distribution. PMID:33514865
The Rubisco small subunits in the green algal genus Chloromonas provide insights into evolutionary loss of the eukaryotic carbon-concentrating organelle, the pyrenoid. PMID:33514317
Pervasive duplication of tumor suppressors in Afrotherians during the evolution of large bodies and reduced cancer risk. PMID:33513090
Integrating Sequence Capture and Restriction Site-Associated DNA Sequencing to Resolve Recent Radiations of Pelagic Seabirds. PMID:33512506
Whole-Genome Comparisons of Ergot Fungi Reveals the Divergence and Evolution of Species within the Genus Claviceps Are the Result of Varying Mechanisms Driving Genome Evolution and Host Range Expansion. PMID:33512490
The origin and evolution of the diosgenin biosynthetic pathway in yam. PMID:33511341
Evolution of Tandem Repeats Is Mirroring Post-polyploid Cladogenesis in Heliophila (Brassicaceae). PMID:33510751
Rediscovery of Pogostemon dielsianus (Lamiaceae, Lamioideae), a rare endemic species from southwestern China, after one century. PMID:33510576
Genomic epidemiology of the early stages of the SARS-CoV-2 outbreak in Russia. PMID:33510171
Identification and characterization of the LRR repeats in plant LRR-RLKs. PMID:33509084
Herpesvirus surveillance and discovery in zoo-housed ruminants. PMID:33508038
Granick revisited: Synthesizing evolutionary and ecological evidence for the late origin of bacteriochlorophyll via ghost lineages and horizontal gene transfer. PMID:33507911
The rise and fall of the ancient northern pike master sex-determining gene. PMID:33506762
Cenote-Taker 2 democratizes virus discovery and sequence annotation. PMID:33505708
Genome Assembly and Transcriptome Analysis of the Fungus Coniella diplodiella During Infection on Grapevine (Vitis vinifera L.). PMID:33505371
Cryphonectriaceae associated with rust-infected Syzygium jambos in Hawaii. PMID:33505197
Lake Poso's shrimp fauna revisited: the description of five new species of the genus Caridina (Crustacea, Decapoda, Atyidae) more than doubles the number of endemic lacustrine species. PMID:33505196
Caridina sinanensis, a new species of stygobiotic atyid shrimp (Decapoda, Caridea, Atyidae) from a karst cave in the Guizhou Province, southwestern China. PMID:33505186
Shards, sequences, and shorelines: two new species of Bembidion from North America (Coleoptera, Carabidae). PMID:33505182
Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass. PMID:33505029
Mercury methylation by metabolically versatile and cosmopolitan marine bacteria. PMID:33504941
One is not enough: On the effects of reference genome for the mapping and subsequent analyses of short-reads. PMID:33503026
Complete genome sequence of ornithogalum virus 3. PMID:33502594
A Draft Genome Assembly of Culex pipiens pallens (Diptera: Culicidae) Using PacBio Sequencing. PMID:33501937
Synonymous mutations and the molecular evolution of SARS-CoV-2 origins. PMID:33500788
Mash-based analyses of Escherichia coli genomes reveal 14 distinct phylogroups. PMID:33500552
Evolutionary Trajectory of the Replication Mode of Bacterial Replicons. PMID:33500342
Temporal changes in the gut microbiota in farmed Atlantic cod (Gadus morhua) outweigh the response to diet supplementation with macroalgae. PMID:33500003
Changes in the faecal microbiome of pied tamarins (Saguinus bicolor) associated with chronic, recurrent diarrhoea and weight loss. PMID:33500002
Oregano essential oil improves piglet health and performance through maternal feeding and is associated with changes in the gut microbiota. PMID:33499989
Survey of rumen microbiota of domestic grazing yak during different growth stages revealed novel maturation patterns of four key microbial groups and their dynamic interactions. PMID:33499950
The microbiome of captive hamadryas baboons. PMID:33499948
Genomic Evidence for Sequestration of Influenza A Virus Lineages in Sea Duck Host Species. PMID:33498851
First Complete Mitochondrial Genome of Melyridae (Coleoptera, Cleroidea): Genome Description and Phylogenetic Implications. PMID:33498432
Antibiotic Resistance and Phylogeny of Pseudomonas spp. Isolated over Three Decades from Chicken Meat in the Norwegian Food Chain. PMID:33498315
Genome Sequence and Adaptation Analysis of the Human and Rice Pathogenic Strain Burkholderia glumae AU6208. PMID:33498266
Distinct antibody repertoires against endemic human coronaviruses in children and adults. PMID:33497357
Local Transmission of SARS-CoV-2 Lineage B.1.1.7, Brazil, December 2020. PMID:33496249
PRMT3 interacts with ALDH1A1 and regulates gene-expression by inhibiting retinoic acid signaling. PMID:33495566
Convergence of sphingolipid desaturation across over 500 million years of plant evolution. PMID:33495556
Discovery of a colossal slickhead (Alepocephaliformes: Alepocephalidae): an active-swimming top predator in the deep waters of Suruga Bay, Japan. PMID:33495481
Prospective mapping of viral mutations that escape antibodies used to treat COVID-19. PMID:33495308
An unusual overrepresentation of genetic factors related to iron homeostasis in the genome of the fluorescent Pseudomonas sp. ABC1. PMID:33492712
In-depth and 3-dimensional exploration of the budding yeast phosphoproteome. PMID:33491328
Mutational analysis of SARS-CoV-2 ORF8 during six months of COVID-19 pandemic. PMID:33490718
Chloroplast genome structure and phylogenetic position of Lophatherum gracile. PMID:33490590
The complete mitochondrial genome of Myzus persicae (Sulzer, 1776; Hemiptera: Aphididae) isolated in Korea. PMID:33490586
The complete chloroplast genome sequence of Camellia sinensis cv. Dahongpao: a most famous variety of Wuyi tea (Synonym: Thea bohea L.). PMID:33490583
Characterization of the complete chloroplast genome of Pinus wangii (Pinaceae), an endangered and endemic species in China. PMID:33490571
The complete chloroplast genome of Pterospermum kingtungense, a Critically Endangered species. PMID:33490567
The complete chloroplast genome of the Chinese Abelia Lineae chinensis (R.Br.) A.Braun & Vatke (Caprifoliaceae). PMID:33490560
The complete chloroplast genome of Glehnia littoralis, an Endangered medicinal herb of Apiaceae family. PMID:33490554
Characterization of the complete mitochondrial genome of the common smoothhound shark, Mustelus mustelus (Carcharhiniformes: Triakidae). PMID:33490549
The complete chloroplast genome of Macrothelypteris torresiana, a reputed medicinal fern (Thelypteridaceae). PMID:33490548
The complete chloroplast genome of the invasive fern Lygodium microphyllum (Cav.) R. Br. PMID:33490533
The complete mitochondrial genome of the longfin dragonfish Tactostoma macropus (Stomiiformes: Stomiidae). PMID:33490517
Analysis of the complete organellar genomes of the rockweed Fucus spiralis (Fucaceae, Phaeophyceae) supports its infraspecific recognition as Fucus vesiculosus var. spiralis. PMID:33490516
The complete chloroplast genome sequence of wild banana, Musa balbisiana variety 'Pisang Klutuk Wulung' (Musaceae). PMID:33490514
The complete chloroplast genome of tropical and sub-tropical fruit tree Lucuma nervosa (Sapotaceae). PMID:33490512
The complete mitochondrial genome of Bathygobius cocosensis (Perciformes, Gobiidae). PMID:33490499
Complete chloroplast genome sequences of Wonwhang (Pyrus pyrifolia) and its phylogenetic analysis. PMID:33490449
Organellar genome analysis of the marine red alga Dasya binghamiae (Dasyaceae, Rhodophyta) reveals an uncharacteristic florideophyte mitogenome structure. PMID:33490405
Niche-Specific Adaptive Evolution of Lactobacillus plantarum Strains Isolated From Human Feces and Paocai. PMID:33489942
RIG-I Has a Role in Immunity Against Haemonchus contortus, a Gastrointestinal Parasite in Ovis aries: A Novel Report. PMID:33488570
Genomic Insights of "Candidatus Nitrosocaldaceae" Based on Nine New Metagenome-Assembled Genomes, Including "Candidatus Nitrosothermus" Gen Nov. and Two New Species of "Candidatus Nitrosocaldus". PMID:33488549
Chemoreceptor Diversity in Apoid Wasps and Its Reduction during the Evolution of the Pollen-Collecting Lifestyle of Bees (Hymenoptera: Apoidea). PMID:33484563
Identifying the true number of specimens of the extinct blue antelope (Hippotragus leucophaeus). PMID:33483538
New Endohyphal Relationships between Mucoromycota and Burkholderiaceae Representatives. PMID:33483310
Locus of Heat Resistance (LHR) in Meat-Borne Escherichia coli: Screening and Genetic Characterization. PMID:33483306
Identification of microbial signatures linked to oilseed rape yield decline at the landscape scale. PMID:33482913
The role of host promiscuity in the invasion process of a seaweed holobiont. PMID:33479490
Abundantly expressed class of noncoding RNAs conserved through the multicellular evolution of dictyostelid social amoebas. PMID:33479022
Resistance to pirimiphos-methyl in West African Anopheles is spreading via duplication and introgression of the Ace1 locus. PMID:33476334
Mitogenome analysis of a green tide forming Ulva from California, USA confirms its identity as Ulva expansa (Ulvaceae, Chlorophyta). PMID:33474501
Complete chloroplast genome sequence of the Pseudostellaria longipedicellata S. Lee, K. Heo & S. C. Kim (Caryophyllaceae). PMID:33474499
The complete chloroplast genome of Mazus pumilus (Mazaceae). PMID:33474460
The complete chloroplast genome of Tetradoxa omeiensis (Adoxaceae) provides insights into the phylogenetic relationship of Adoxaceae. PMID:33474447
Characterization of the whole plastid genome sequence of Abies chensiensis (Pinaceae), an endangered endemic conifer in China. PMID:33474445
Characterization of the complete chloroplast genome of Camellia granthamiana (Theaceae), a Vulnerable species endemic to China. PMID:33474444
The complete chloroplast genome of Antiaris toxicaria, a medicinal and extremely toxic species. PMID:33474432
Characterization of the complete chloroplast genome of summer snowflake (Leucojum aestivum, Amaryllidaceae). PMID:33474418
Characterization of the complete chloroplast genome of endangered Cycads Zamia fischeri Miq. ex Lem. PMID:33474414
The complete chloroplast genome sequence of Hosta capitata (Koidz.) Nakai (Asparagaceae). PMID:33474411
Characterization of the complete chloroplast genome sequence of Sphagneticola calendulacea (Asteraceae). PMID:33474403
Characterization of the complete chloroplast genome of Lonicera macranthoides. PMID:33474395
The complete chloroplast genome sequence of Styrax zhejiangensis, a species with an extremely small population. PMID:33474394
The chloroplast genome of an Endangered orchid species, Gastrochilus calceolaris (Orchidaceae: Aeridinae). PMID:33474389
The complete chloroplast genome of Cycas Szechuanensis, an extremely endangered species. PMID:33474385
The complete chloroplast genome sequence of flowering banana, Musa ornata. PMID:33474380
The first complete chloroplast genome of Pteris vittata (Pteridaceae), an arsenic hyperaccumulating fern. PMID:33474375
The complete chloroplast genome sequence of Abies beshanzuensis, a highly endangered fir species from south China. PMID:33474367
The mitochondrial genomes of five frog species of the Neotropical genus Ischnocnema (Anura: Brachycephaloidea: Brachycephalidae). PMID:33474365
Chloroplast genome of tropical and sub-tropical fruit tree Syzygium samarangense (Myrtaceae). PMID:33474355
The complete chloroplast genome of monotypic fern, Mesopteris tonkinensis (Thelypteridaceae). PMID:33474348
Characterization of the complete chloroplast genome of Chinese privet Ligustrum lucidum (Oleaceae). PMID:33474345
The complete nucleotide sequence of chloroplast genome of Euphorbia kansui (Euphorbiaceae), an endemic herb in China. PMID:33474339
The complete chloroplast genome of Pyrrosia bonii (Polypodiaceae), an important ornamental and medical fern. PMID:33474328
The complete chloroplast genome of Leptochilus hemionitideus, a traditional Chinese medical fern. PMID:33474322
The complete chloroplast genome of Magnolia sinostellata (Magnoliaceae), a rare and endangered species of China. PMID:33474307
The complete chloroplast genome sequence of Sphagneticola trilobata (Asteraceae). PMID:33474306
Characterization of the complete mitochondrial genome of the lung fluke, Paragonimus kellicotti. PMID:33474294
Complete chloroplast genome of Ulleung Island endemic, Epilobium ulleungensis (Onagraceae), in Korea. PMID:33474291
The complete chloroplast genome sequences of Barnardia japonica (Thunb.) Schult. and Schult.f. PMID:33474288
The complete chloroplast genome of Carpinus hebestroma, a critically endangered species endemic to Taiwan. PMID:33474286
Complete chloroplast genome of Ulleung Island endemic basswood, Tilia insularis (Malvaceae), in Korea. PMID:33474259
Characterization of the complete mitochondrial genome of the lung fluke, Paragonimus heterotremus. PMID:33474240
Chloroplast genome of tropical and sub-tropical fruit tree Clausena lansium (Rutaceae). PMID:33474224
The complete chloroplast genome of the endangered species Triaenophora shennongjiaensis (Orobanchaceae s.l.). PMID:33474222
The complete mitochondrial genome of the common vole, Microtus arvalis (Rodentia: Arvicolinae). PMID:33474199
The complete mitochondrial genome sequence of the sakura shrimp, Sergia lucens (Crustacea, Decapoda, Sergestidae). PMID:33474198
The complete chloroplast genome sequence of Camellia ptilophylla (Theaceae): a natural caffeine-free tea plant endemic to China. PMID:33474191
The complete plastid genome of Suaeda malacosperma (Amaranthaceae/Chenopodiaceae), a vulnerable halophyte in coastal regions of Korea and Japan. PMID:33474177
The complete chloroplast genome of a Korean endemic plant Chrysosplenium aureobracteatum Y.I. Kim & Y.D. Kim (Saxifragaceae). PMID:33474176
Complete chloroplast genome of glyphosate resistant Sonchus oleraceus L. from Australia, with notes on the small single copy (SSC) region orientation. PMID:33474170
The chloroplast genome sequence of Magnolia kobus DC. (Magnoliaceae). PMID:33474163
Complete chloroplast genome of Ulleung Island endemic flowering cherry, Prunus takesimensis (Rosaceae), in Korea. PMID:33474139
Complete chloroplast genome of an Endangered mangrove plant Hernandia nymphiifolia (C. Presl) Kubitzki (Hernandiaceae). PMID:33474126
The complete chloroplast genome sequence of Phedimus Kamtschaticus (Crassulaceae) in Korea. PMID:33474125
Characterization of the complete chloroplast genome of toad lily Tricyrtis Macropoda (Liliaceae). PMID:33474100
Complete mitochondrial genome sequence of Glaucosoma buergeri (Pempheriformes: Glaucosomatidae) with implications based on the phylogenetic position. PMID:33474085
Complete chloroplast genome of the tree fern Alsophila podophylla (Cyatheaceae). PMID:33474061
Complete chloroplast genome of Pluchea indica (L.) Less. (Asteraceae) and its phylogenetic analysis. PMID:33474035
The complete mitochondrial genome of the horned lizard Phrynosoma blainvillii (Squamata: Phrynosomatidae) from California, USA. PMID:33474009
The complete chloroplast genome sequence of Barthea barthei (Melastomataceae), a shrub endemic to southern China. PMID:33473991
The complete mitochondrial genome of Pristurus rupestris rupestris. PMID:33473987
The complete chloroplast genome sequence of Korean raspberry Rubus crataegifolius (Rosaceae). PMID:33473983
The complete chloroplast genome sequence of the Japanese Camellia (Camellia japonica L.). PMID:33473909
Complete chloroplast genome of glyphosate resistant Conyza bonariensis (L.) Cronquist from Australia. PMID:33473856
Complete chloroplast genomes of the Chlamydomonas reinhardtii nonphotosynthetic mutants CC-1375, CC-373, CC-4199, CC-2359 and CC-1051. PMID:33473842
Complete mitochondrial genome and phylogenetic analysis of willow ptarmigan (Lagopus lagopus) and rock ptarmigan (Lagopus muta) (Galliformes: Phasianidae: Tetraoninae). PMID:33473840
The mitochondrial genomes of three species of poison frogs (Anura: Dendrobates). PMID:33473839
The mitochondrial genomes of Atlas Geckos (Quedenfeldtia): mitogenome assembly from transcriptomes and anchored hybrid enrichment datasets. PMID:33473826
Complete mitochondrial genome of the smallmouth hardyhead (Atherinosoma microstoma) and its phylogenetic position among the Atheriniform fishes. PMID:33473813
Complete mitochondrial genome and the phylogenetic position of the Lake Eyre hardyhead (Craterocephalus eyresii), a freshwater atherinid fish endemic to Lake Eyre Basin, South Australia. PMID:33473812
Complete mitochondrial genome of a bat-eared fox (Otocyon megalotis), along with phylogenetic considerations. PMID:33473804
The complete chloroplast genome sequence of Melastoma candidum (Melastomataceae). PMID:33473785
The complete mitogenome of the rockweed Fucus distichus (Fucaceae, Phaeophyceae). PMID:33473768
The complete mitochondrial genome of Xiphister atropurpureus (Perciformes: Stichaeidae). PMID:33473752
The complete mitochondrial genome of Cerion uva uva (Gastropoda: Panpulmonata: Stylommatophora: Cerionidae). PMID:33473751
The complete mitochondrial genome of a yeti crab Kiwa tyleri Thatje, 2015 (Crustacea: Decapod: Anomura: Kiwaidae) from deep-sea hydrothermal vent. PMID:33473745
The complete mitochondrial genome of the 'solar-powered' sea slug Plakobranchus cf. ocellatus (Heterobranchia: Panpulmonata: Sacoglossa). PMID:33473741
The complete mitochondrial genome of the Bechstein's bat, Myotis bechsteinii (Chiroptera, Vespertilionidae). PMID:33473727
The complete mitochondrial genome of the White-Nose Syndrome pathogen, Pseudogymnoascus destructans. PMID:33473712
The complete mitochondrial genome of a cryptic amphipod species from the Gammarus fossarum complex. PMID:33473701
Complete chloroplast genome sequences of six lines of Echinochloa colona (L.) link. PMID:33473687
The complete mitochondrial genome of the parthenogenetic Caucasian rock lizard Darevskia unisexualis (Squamata: lacertidae) contains long tandem repeat formed by 59 bp monomer. PMID:33473663
The complete mitochondrial genome of the stream snail Clithon retropictus (Neritimorpha: Neritidae). PMID:33473640
Mitochondrial and plastid genome analysis of the heteromorphic red alga Mastocarpus papillatus (C. Agardh) Kützing (Phyllophoraceae, Rhodophyta) reveals two characteristic florideophyte organellar genomes. PMID:33473594
The complete mitochondrial genome of sponge Halichondria (Halichondria) sp. (Demospongiae, Suberitida, Halichondriidae). PMID:33473538
Complete mitochondrial genomes of the Laotian Rock Rat (Laonastes aenigmamus) confirm deep divergence within the species. PMID:33473528
The complete mitochondrial genome of sponge Tethya sp. (Demospongiae, Tethyida, Tethyidae). PMID:33473525
Mitochondrial and plastid genome analysis of the marine red alga Coeloseira compressa (Champiaceae, Rhodophyta). PMID:33473518
Mitogenome of Mytilus trossulus (Mytilidae, Bivalvia) isolated from a 1920 herbarium specimen. PMID:33473516
Mitochondrial genomes of the South American electric knifefishes (Order Gymnotiformes). PMID:33473497
Transcriptomic analysis of s-methoprene resistance in the lesser grain borer, Rhyzopertha dominica, and evaluation of piperonyl butoxide as a resistance breaker. PMID:33472593
In silico comparative genomics of SARS-CoV-2 to determine the source and diversity of the pathogen in Bangladesh. PMID:33471859
V-pipe: a computational pipeline for assessing viral genetic diversity from high-throughput data. PMID:33471068
Mutation rates and selection on synonymous mutations in SARS-CoV-2. PMID:33469589
Phylogenetic Distribution of Plastic-Degrading Microorganisms. PMID:33468707
SARS-CoV-2 Genomic Variation in Space and Time in Hospitalized Patients in Philadelphia. PMID:33468702
Natural Bacterial Assemblages in Arabidopsis thaliana Tissues Become More Distinguishable and Diverse during Host Development. PMID:33468687
The Tiger Rattlesnake genome reveals a complex genotype underlying a simple venom phenotype. PMID:33468678
Intranasal Infection of Ferrets with SARS-CoV-2 as a Model for Asymptomatic Human Infection. PMID:33467732
Differentiation of Hedyotis diffusa and Common Adulterants Based on Chloroplast Genome Sequencing and DNA Barcoding Markers. PMID:33467716
An Integrated Approach to Identify New Anti-Filarial Leads to Treat River Blindness, a Neglected Tropical Disease. PMID:33466870
Design and Characterization of a DNA Vaccine Based on Spike with Consensus Nucleotide Sequence against Infectious Bronchitis Virus. PMID:33466810
The complete chloroplast genome of Drymocallis saviczii (Rosaceae: Potentilleae). PMID:33465180
The complete chloroplast genome of Sibbaldia aphanopetala (Rosaceae: Potentilleae). PMID:33465175
Intra-host changes in Kaposi sarcoma-associated herpesvirus genomes in Ugandan adults with Kaposi sarcoma. PMID:33465147
Multiple origins of a frameshift insertion in a mitochondrial gene in birds and turtles. PMID:33463679
Anomalous Phylogenetic Behavior of Ribosomal Proteins in Metagenome-Assembled Asgard Archaea. PMID:33462601
The emergence of the brain non-CpG methylation system in vertebrates. PMID:33462491
Analysis of global human gut metagenomes shows that metabolic resilience potential for short-chain fatty acid production is strongly influenced by lifestyle. PMID:33462272
Sarcocystis cristata sp. nov. (Apicomplexa, Sarcocystidae) in the imported great blue turaco Corythaeola cristata (Aves, Musophagidae). PMID:33461619
Giant lungfish genome elucidates the conquest of land by vertebrates. PMID:33461212
The complete chloroplast genome of a critically endangered tree species, Hopea reticulata (Dipterocarpaceae). PMID:33458242
Complete chloroplast genome sequence and phylogenetic analysis of Syzygium malaccense. PMID:33458237
The complete chloroplast genome sequence of Stilpnolepis centiflora (Asteraceae), an endemic desert species in Northern China. PMID:33458235
The complete chloroplast genome sequence of Hemerocallis fulva. PMID:33458234
Complete chloroplast genome sequence and phylogenetic analysis of Annona reticulata. PMID:33458233
Complete plastome sequence of Aspidopterys obcordata (Malpighiaceae), a traditional Dai medicinal plant from Xishuangbanna, Yunnan, China. PMID:33458230
Characterization of the plastome of Camellia pingguoensis (Theaceae), an endangered and endemic yellow camellia species in China. PMID:33458228
The complete mitochondrial genome of Chionoecetes japonicus (Crustacea: Decapoda: Majoidea). PMID:33458227
Characterization of the complete chloroplast genome of Coelogyne fimbriata (Orchidaceae). PMID:33458221
Mitochondrial genome of Salix cardiophylla and its implications for infrageneric division of the genus of Salix. PMID:33458213
Characterization of the complete mitochondrial DNA sequence of the Lagocephalus guentheri (Tetraodontidae, Tetraodontiformes). PMID:33458207
The complete chloroplast genome sequence of Bambusa beecheyana var.pubescens (Bambusodae). PMID:33458205
The complete chloroplast genome sequence of a medicinal orchid species Coelogyne fimbriata (Orchidaceae). PMID:33458197
The complete mitochondrial genome of new species candidate of Rosa rugosa (Rosaceae). PMID:33458196
The complete mitochondrial genome of Salix polaris, a specie in harsh arctic environment. PMID:33458194
The complete chloroplast genome of Phlegmariurus phlegmaria, one representative species of genus Phlegmariurus. PMID:33458191
The complete chloroplast genome sequence of Senna tora and phylogenetic analysis. PMID:33458190
The complete chloroplast genome of Hosta plantaginea (Lam.) Aschers. PMID:33458185
The complete nucleotide molecular sequence of plastid genome of Zanthoxylum armatum (Rutaceae). PMID:33458184
The complete chloroplast genome sequence of Hippeastrum rutilum (Amaryllidoideae). PMID:33458180
The complete chloroplast genome sequence of the medicinal plant Gonostegia hirta (Bl.) Miq. (Urticaceae). PMID:33458179
The complete mitochondrial genome of Monochamus alternatus alternatus (Coleoptera: Cerambycidae). PMID:33458177
The complete chloroplast genome sequence of a popular ornamental plant Calibrachoa hybrida (Solanaceae: Petunioideae). PMID:33458174
Complete mitogenome of the ixodid tick Dermacentor reticulatus (Acari: Ixodida). PMID:33458171
The complete mitochondrial genome of Wiesnerella denudata (Mitt.) Steph. (Wiesnerellaceae, Marchantiophyta): large number of intraspecific variations on mitochondrial genomes of W. denudata. PMID:33458166
Complete mitochondrial genome and phylogenetic analysis of the Weddell seal, Leptonychotes weddellii. PMID:33458160
Complete mitochondrial genome of the snow petrel, Pagodroma nivea. PMID:33458159
The complete chloroplast genome of Akebia trifoliata subsp. australis (Lardizabalaceae), a medicinal plant in China. PMID:33458157
The complete chloroplast genome of Annona muricata L.: a tropical fruit with important medicinal properties. PMID:33458156
The complete chloroplast genome of Heteromorpha arborescens (Apiaceae). PMID:33458154
Characterization of the complete chloroplast genome sequence of Koelreuteria bipinnata. PMID:33458153
The complete chloroplast genome sequence of Rosa minutifolia. PMID:33458151
Mitochondrial genome of the freshwater annelid Manayunkia occidentalis (Sabellida: Fabriciidae). PMID:33458144
The chloroplast genome of Adiantum reniforme var. sinense, an endangered fern endemic to China. PMID:33458143
Characterization of the complete chloroplast genome of Corydalis inopinata Prain ex Fedde (Papaveraceae). PMID:33458142
The complete chloroplast genome sequence of Nepeta cataria L. (Labiatae). PMID:33458140
Complete mitochondrial genome of Glomeridesmus spelaeus (Diplopoda, Glomeridesmida), a troglobitic species from iron-ore caves in Eastern Amazon. PMID:33458136
The complete chloroplast genome sequence of Butea monosperma (Fabaceae). PMID:33458130
The complete chloroplast genome sequence of Stellera chamaejasme f. chrysantha (Thymelaeaceae). PMID:33458128
The complete chloroplast genome of Lindera pulcherrima var. hemsleyana (Lauraceae). PMID:33458127
The complete genome sequence of Sorbus insignis (Rosaceae: Amygdaloideae), an epiphytic shrub in this genus. PMID:33458123
Phylogenetic analyses to uncover the evolutionary relationship of a newly sequenced mitochondrial genome from an Eastern spinebill (Acanthorhynchus tenuirostris). PMID:33458122
The complete chloroplast genome sequence of Rumex nepalensis Spreng. PMID:33458119
The complete chloroplast genome sequence of Garcinia oblongifolia (Clusiaceae). PMID:33458113
SMRT-based mitochondrial genome of the edible mushroom Morchella conica. PMID:33458112
The complete chloroplast genome sequences of two Chaenomeles species (Chaenomeles cathayensis and Chaenomeles thibetica). PMID:33458107
Characterization of the complete chloroplast genome of Ligusticum sinense, as a Chinese herb to treat toothache in China. PMID:33458101
The mitogenome of Mileewa margheritae (Hemiptera: Cicadellidae: Mileewinae). PMID:33458096
The complete chloroplast genome sequence of Acorus tatarinowii (Araceae) from Fujian, China. PMID:33458094
The complete chloroplast genome of Wiesnerella denudata (Mitt.) Steph. (Wiesnerellaceae, Marchantiophyta). PMID:33458082
Characterization of the complete chloroplast genome of Trachycarpus fortunei. PMID:33458075
The complete chloroplast genome of desert spiny semi-shrub Alhagi sparsifolia (Fabaceae) from Central Asia. PMID:33458072
The complete mitochondrial genome of Iphisa elegans (Reptilia: Squamata: Gymnophthalmidae). PMID:33458069
The complete chloroplast genome of Sedum emarginatum (Crassulaceae). PMID:33458067
The complete chloroplast genome of Ulmus parvifolia, an important landscaping tree. PMID:33458063
Characterization and phylogenetic relationships analysis of the complete chloroplast genome of Carya ovata. PMID:33458062
The complete chloroplast genome sequence of Lirianthe hodgsonii, a tree species of Magnoliaceae as least concern. PMID:33458060
Complete chloroplast genome of Synsepalum dulcificum D.: a magical plant that modifies sour flavors to sweet. PMID:33458055
The complete mitochondrial genome of the Pieris napi (Lepidoptera: Pieridae) and its phylogenetic implication. PMID:33458047
The complete chloroplast genome sequence of Red Asparagus Lettuce (Lactuca sativa var. asparagine L. red) (Asteraceae), endemic to China. PMID:33458037
Characterization of the complete chloroplast genome of Aconitum flavum (Ranunculaceae). PMID:33458024
The second complete mitochondrial genome of Alphitobius diaperinus Panzer, 1797 (Coleoptera: Tenebrionidae): investigation of intraspecific variations on mitochondrial genome. PMID:33458023
Characterization and phylogenetic analysis of the mitochondrial genome of Mileewa ponta (Hemiptera: Cicadellidae: Mileewinae). PMID:33458022
Complete chloroplast genome sequence of Bambusa rigida (Bambuseae). PMID:33458020
Characterization of the complete chloroplast genome of a medicinal plant, Portulaca oleracea. PMID:33458017
The complete chloroplast genome sequence of Ulmus parvifolia (Ulmaceae). PMID:33458016
The complete chloroplast genome sequence of the medicinal plant Lepidium meyenii Walp. (Cruciferae). PMID:33458005
The complete chloroplast genome sequence of Viola prionantha (Violaceae). PMID:33458004
Sequence and phylogenetic analysis of the chloroplast genome for Rosa xanthina. PMID:33458003
The complete chloroplast genome of Berchemia lineata, an important medicinal plant from China. PMID:33457996
The complete chloroplast genome of Scapania ampliata Steph., 1897 (Scapaniaceae, Jungermanniales). PMID:33457990
Complete mitochondrial genomes provide current refined phylogenomic hypotheses for relationships among ten Hirundo species. PMID:33457987
The complete mitochondrial genome of Aphis gossypii Glover, 1877 (Hemiptera: Aphididae) isolated from Plantago asiatica in Korea. PMID:33457986
Characterization of the complete chloroplast genome of Liriope platyphylla (Asparagaceae: Nolinoideae) isolated in Korea. PMID:33457984
The complete plastid genome sequence of Gleditsia sinensis, an ancient medicinal tree in China. PMID:33457978
A new gene order in the mitochondrial genome of the deep-sea diaphanous hatchet fish Sternoptyx diaphana Hermann, 1781 (Stomiiformes: Sternoptychidae). PMID:33457974
The complete chloroplast genome sequence of Castanopsis sclerophylla (Lindl.) Schott (Fagaceae). PMID:33457973
Complete chloroplast genome of Senna spectabilis (DC.) H.S. Irwin & Barneby (Fabaceae) and phylogenetic analysis. PMID:33457972
The complete chloroplast genome sequence of medicinal plant: Lepidium apetalum (Brassicaceae). PMID:33457970
Complete chloroplast genome sequence of Michelia champaca var. champaca Linnaeus, an ornamental tree species of Magnoliaceae. PMID:33457969
The complete chloroplast genome of Rhamnus globosa (Rhamnaceae). PMID:33457966
The complete chloroplast genome sequence of Malus toringo (Rosaceae). PMID:33457964
Complete chloroplast genome sequence of Homalium hainanense (Salicaceae). PMID:33457961
The complete mitochondrial genome of Anax parthenope (Odonata: Anisoptera) assembled from next-generation sequencing data. PMID:33457960
The complete chloroplast genome sequence of Malus toringoides (Rosaceae). PMID:33457949
The complete chloroplast genome sequence of Swertia diluta (Gentianaceae). PMID:33457940
The complete chloroplast genome of Catalpa 'Bairihua', a hybrid variety with multi season flowering. PMID:33457939
The complete chloroplast genome sequence of Elaeocarpus braceanus: the first Celastraceae plastome. PMID:33457938
The complete chloroplast genome sequence of Taxus yunnanensis. PMID:33457937
The complete chloroplast genome of Magnolia delavayi, a threatened species endemic to Southwest China. PMID:33457926
Plastid genome of stonecrop Hylotelephium verticillatum (Sedoideae; Crassulaceae): insight into structure and phylogenetic position. PMID:33457924
The complete chloroplast genome sequence of Viola prionantha (Violaceae). PMID:33457923
The complete chloroplast genome sequence of Michelia figo based on landscape design, and a comparative analysis with other Michelia species. PMID:33457921
The complete chloroplast genome sequence of Populus wilsonii based on landscape design, and a comparative analysis with other Populus species. PMID:33457918
The complete chloroplast genome sequence of Chlorella vulgaris and phylogenetic analysis. PMID:33457917
The complete chloroplast genome of Musa acuminata var. chinensis. PMID:33457907
The complete chloroplast genome sequence of Populus simonii, a medicinal plant for anti-lung cancer activity. PMID:33457906
The complete chloroplast genome of Acer tutcheri Duthie (Acereae, Sapindaceae): an ornamental tree endemic to China. PMID:33457905
Complete chloroplast genome sequence of Stachys japonica (Labiatae). PMID:33457900
The complete chloroplast genome sequence of Tapiscia sinensis (Staphyleaceae). PMID:33457896
Characterization of the complete plastome sequence of perennial sowthistle, Sonchus arvensis (Asteraceae). PMID:33457894
The complete plastome and phylogeny of Barnardia japonica (Asparagaceae). PMID:33457890
The complete mitochondrial genome of Cervus canadensis (Erxleben, 1777), as a model species of Chronic Wasting Disease (CWD). PMID:33457884
Complete chloroplast genome sequence of Bambusa subtruncata (Bambusodae). PMID:33457879
The complete chloroplast genome sequence of medicinal plant, Selaginella involvens. PMID:33457877
The complete chloroplast genome of Russian sage Salvia yangii B. T. Drew (Lamiaceae). PMID:33457870
Characterization of the chloroplast genome of the Osmanthus didymopetalus. PMID:33457835
Chloroplast genome of silverleaf nightshade (Solanum elaeagnifolium Cav.), a Weed of National Significance in Australia. PMID:33457834
Characterization of the complete mitochondrial genome of Lymantria sugii from China and its phylogenetic analysis. PMID:33457832
The complete chloroplast genome sequence of Populus trinervis, and a comparative analysis with other Populus species. PMID:33457829
The complete chloroplast genome sequence of Populus rotundifolia, and a comparative analysis with other Populus species. PMID:33457828
The complete chloroplast genome sequence of Salvia miltiorrhiza, a medicinal plant for preventing and treating vascular dementia. PMID:33457827
Characterization of the complete chloroplast genome of Rumex nepalensis (Polygonaceae). PMID:33457826
The complete chloroplast genome sequence of corn and economic analysis on production costs profits in Zhengzhou city. PMID:33457821
Mitochondrial genome of Bactrocera tuberculata using next-generation sequencing from China and its phylogenetic implication. PMID:33457816
Complete chloroplast genome sequence of Lirianthe coco (Loureiro) N. H. Xia & C. Y. Wu (Magnoliaceae), a popular ornamental species. PMID:33457808
Complete mitochondrial genome of Niphades castanea (Coleoptera: Curculionidae). PMID:33457806
Complete chloroplast genome sequence of Liquidambar formosana, an ancient subtropical landscape plant to China. PMID:33457804
Characterization the complete chloroplast genome of Euryale ferox (Nymphaeaceae), an medicinal plant species in China. PMID:33457802
The complete mitochondrial genome of Norfolk Robin (Petroica multicolor: Petroicidae), an endemic endangered species in Norfolk Island. PMID:33457793
Characterization of the complete chloroplast genome of Tulipa iliensis (Liliaceae). PMID:33457791
Complete chloroplast genome of Tulipa buhseana (Liliaceae). PMID:33457790
The complete chloroplast genome of agave hybrid 11648. PMID:33457785
The complete chloroplast genome sequence of medicinal plant, Artemisia gmelinii. PMID:33457782
The complete chloroplast genome sequence of Populus davidiana, and a comparative analysis with other Populus species. PMID:33457780
The first complete mitogenome of Cervus canadensis nannodes (Merriam, 1905). PMID:33457766
Characterization of the complete chloroplast genome of Citrus reticulate (Rutaceae, Citrus). PMID:33457765
The complete chloroplast genome sequence of Centella asiatica (Linnaeus) Urban. PMID:33457762
The complete chloroplast genome sequence of Polygonum chinense L. PMID:33457758
The complete chloroplast genome sequence of Senna bicapsularis. PMID:33457756
Complete mitochondrial genome of Cyrenobatissa subsulcata (Veneroida:Corbiculidae). PMID:33457755
The complete chloroplast genome of Catalpa speciosa (Warder) Engelmann (Bignoniaceae). PMID:33457754
The complete chloroplast genome of paradox (Juglans major × J. regia), an interspecific hybrid in China. PMID:33457753
The complete mitochondrial and plastid genomes of the invasive marine red alga Caulacanthus okamurae (Caulacanthaceae, Rhodophyta) from Moss Landing, California, USA. PMID:33457745
The complete chloroplast genome of a medicinal plant Anemone flaccida (Ranunculaceae). PMID:33457744
The complete chloroplast genome of Atractylodes macrocephala Koidz. (Asteraceae). PMID:33457742
The complete chloroplast genome sequence of Liparis bootanensis (Orchidaceae). PMID:33457741
Characterization of the complete chloroplast genome of Syringa wolfii. PMID:33457739
The complete chloroplast genome sequence of Primula filchnerae Knuth (Primulaceae), an endangered species in China. PMID:33457737
The complete chloroplast genome sequence of Brainea insignis (Blechnaceae). PMID:33457732
The complete chloroplast genome sequence of Anogeissus acuminata (combretaceae). PMID:33457731
Characterization of the complete chloroplast genome of Allium mongolicum. PMID:33457730
The complete chloroplast genome sequence of Annamocarya sinensis (Juglandaceae), an Endangered species endemic to Yunnan Province, China. PMID:33457728
Mixotrophic chemosynthesis in a deep-sea anemone from hydrothermal vents in the Pescadero Basin, Gulf of California. PMID:33455582
Microbial Diversity of Deep-Sea Ferromanganese Crust Field in the Rio Grande Rise, Southwestern Atlantic Ocean. PMID:33452896
Newly discovered Asgard archaea Hermodarchaeota potentially degrade alkanes and aromatics via alkyl/benzyl-succinate synthase and benzoyl-CoA pathway. PMID:33452484
Comparative genomics reveals new functional insights in uncultured MAST species. PMID:33452482
Linkage mapping identifies a non-synonymous mutation in FLOWERING LOCUS T (FT-B1) increasing spikelet number per spike. PMID:33452357
Black spicules from a new interstitial opheliid polychaete Thoracophelia minuta sp. nov. (Annelida: Opheliidae). PMID:33452319
De novo assembled salivary gland transcriptome and expression pattern analyses for Rhipicephalus evertsi evertsi Neuman, 1897 male and female ticks. PMID:33452281
Draft Genome Sequences of Thelohania contejeani and Cucumispora dikerogammari, Pathogenic Microsporidia of Freshwater Crustaceans. PMID:33446596
Mitochondrial genomes of two eucotylids as the first representatives from the superfamily Microphalloidea (Trematoda) and phylogenetic implications. PMID:33446249
Horizontally acquired antibacterial genes associated with adaptive radiation of ladybird beetles. PMID:33446206
Paracoccidioides Genomes Reflect High Levels of Species Divergence and Little Interspecific Gene Flow. PMID:33443110
Identification of SARS-CoV-2 Nucleocapsid and Spike T-Cell Epitopes for Assessing T-Cell Immunity. PMID:33443088
Uncovering dynamic evolution in the plastid genome of seven Ligusticum species provides insights into species discrimination and phylogenetic implications. PMID:33441833
Characterization and comparative analysis among plastome sequences of eight endemic Rubus (Rosaceae) species in Taiwan. PMID:33441744
Structural and functional analysis of the Francisella lysine decarboxylase as a key actor in oxidative stress resistance. PMID:33441661
Signatures of conserved and unique molecular features in Afrotheria. PMID:33441654
The pineapple MADS-box gene family and the evolution of early monocot flower. PMID:33441609
Genome-wide macroevolutionary signatures of key innovations in butterflies colonizing new host plants. PMID:33441560
Inferring the Phylogenetic Positions of Two Fig Wasp Subfamilies of Epichrysomallinae and Sycophaginae Using Transcriptomes and Mitochondrial Data. PMID:33440891
The First Complete Mitochondrial Genome of Lachninae Species and Comparative Genomics Provide New Insights into the Evolution of Gene Rearrangement and the Repeat Region. PMID:33440807
Markers for genetic change. PMID:33437884
A molecular phylogeny of historical and contemporary specimens of an under-studied micro-invertebrate group. PMID:33437431
Phylogeny and biogeography of the Japanese rhinoceros beetle, Trypoxylus dichotomus (Coleoptera: Scarabaeidae) based on SNP markers. PMID:33437420
Transcription Inhibitors with XRE DNA-Binding and Cupin Signal-Sensing Domains Drive Metabolic Diversification in Pseudomonas. PMID:33436508
Phage Origin of Mitochondrion-Localized Family A DNA Polymerases in Kinetoplastids and Diplonemids. PMID:33432342
Implications of genome simple sequence repeats signature in 98 Polyomaviridae species. PMID:33432281
Long rDNA amplicon sequencing of insect-infecting nephridiophagids reveals their affiliation to the Chytridiomycota and a potential to switch between hosts. PMID:33431987
Phylogenomics of the Hyalella amphipod species-flock of the Andean Altiplano. PMID:33431936
Analysis of an Ebola virus disease survivor whose host and viral markers were predictive of death indicates the effectiveness of medical countermeasures and supportive care. PMID:33430949
Multiple New Strains of Amphidomataceae (Dinophyceae) from the North Atlantic Revealed a High Toxin Profile Variability of Azadinium spinosum and a New Non-Toxigenic Az. cf. spinosum. PMID:33430155
The complete chloroplast genome sequence of Catalpa bungei (Bignoniaceae): a high-quality timber species from China. PMID:33426301
The complete mitochondrial genome of the millipede Epanerchodus koreanus Verhoeff, 1937 collected in limestone cave of Korea (Polydesmidae: Polydesmida). PMID:33426298
The complete chloroplast genome sequence of Lophatherum gracile. PMID:33426297
The complete chloroplast genome of endangered Zhangjiajie sage Salvia daiguii Y. K. Wei & Y. B. Huang (Lamiaceae). PMID:33426293
The complete mitochondrial genome of Ricania shantungensis (Hemiptera: Ricaniidae) in Korea. PMID:33426286
The complete plastid genome sequence of Ilex micrococca Maxim. PMID:33426280
Complete chloroplast genome sequence and phylogenetic analysis of Ilex viridis Champ. ex Benth. PMID:33426279
The complete mitochondrial genome of Nylanderia flavipes (Smith, 1874) (Hymenoptera: Formicidae). PMID:33426274
Mitochondrial genome of Brachystomella parvula (Collembola: Brachystomellidae). PMID:33426271
Efficient treatment of a preclinical inflammatory bowel disease model with engineered bacteria. PMID:33426148
Regulator Network Analysis of Rice and Maize Yield-Related Genes. PMID:33425929
Selective Sweeps Lead to Evolutionary Success in an Amazonian Hyperdominant Palm. PMID:33424928
The Genus Pachyma (Syn. Wolfiporia) Reinstated and Species Clarification of the Cultivated Medicinal Mushroom "Fuling" in China. PMID:33424793
Saccharibacteria as Organic Carbon Sinks in Hydrocarbon-Fueled Communities. PMID:33424787
Human SARS CoV-2 spike protein mutations. PMID:33423311
Geosmithia associated with hardwood-infesting bark and ambrosia beetles, with the description of three new species from Poland. PMID:33420645
Comparative analysis of chloroplast genomes indicated different origin for Indian tea (Camellia assamica cv TV1) as compared to Chinese tea. PMID:33420248
HIV-1 diversity considerations in the application of the Intact Proviral DNA Assay (IPDA). PMID:33420062
Evolution of regulatory networks associated with traits under selection in cichlids. PMID:33419455
An updated tribal classification of Lamiaceae based on plastome phylogenomics. PMID:33419433
Gastric Adenocarcinomas and Signet-Ring Cell Carcinoma: Unraveling Gastric Cancer Complexity through Microbiome Analysis-Deepening Heterogeneity for a Personalized Therapy. PMID:33419357
Comparative and Phylogenetic Analysis of Complete Chloroplast Genomes in Eragrostideae (Chloridoideae, Poaceae). PMID:33419221
Genetic and Antigenetic Characterization of the Novel Kotalahti Bat Lyssavirus (KBLV). PMID:33419096
A comprehensive and high-quality collection of Escherichia coli genomes and their genes. PMID:33417534
Evolutionary histories and mycorrhizal associations of mycoheterotrophic plants dependent on saprotrophic fungi. PMID:33417080
A simple and effective F0 knockout method for rapid screening of behaviour and other complex phenotypes. PMID:33416493
A high prevalence of bla OXA-48 in Klebsiella (Raoultella) ornithinolytica and related species in hospital wastewater in South West England. PMID:33416467
Diversity analysis of thermophilic hydrogenogenic carboxydotrophs by carbon monoxide dehydrogenase amplicon sequencing using new primers. PMID:33415441
Coding-Complete Genome Sequences of Six Influenza Type A Strains Circulating in Lithuania in the 2009-2010 Epidemic Season. PMID:33414352
Draft Genome Sequences of Three Strains of Pseudomonas syringae pv. eriobotryae, a Pathogen Causing Canker Disease in Loquat, Isolated in Japan. PMID:33414289
Characterization of a Complete Genome Sequence of Molluscum Contagiosum Virus from an Adult Woman in Australia. PMID:33414285
An integrated in silico immuno-genetic analytical platform provides insights into COVID-19 serological and vaccine targets. PMID:33413610
Transcriptome of nasopharyngeal samples from COVID-19 patients and a comparative analysis with other SARS-CoV-2 infection models reveal disparate host responses against SARS-CoV-2. PMID:33413422
Comparative genomic analysis of Polypodiaceae chloroplasts reveals fine structural features and dynamic insertion sequences. PMID:33413107
Diverse viral proteases activate the NLRP1 inflammasome. PMID:33410748
Complex Evolution of the Mismatch Repair System in Eukaryotes is Illuminated by Novel Archaeal Genomes. PMID:33409543
Specificity of assemblage, not fungal partner species, explains mycorrhizal partnerships of mycoheterotrophic Burmannia plants. PMID:33408367
Escherichia ruysiae sp. nov., a novel Gram-stain-negative bacterium, isolated from a faecal sample of an international traveller. PMID:33406029
Experimental crossover study on the effects of withholding feed for 24 h on the equine faecal bacterial microbiota in healthy mares. PMID:33402190
Genomic Evidence of In-Flight Transmission of SARS-CoV-2 Despite Predeparture Testing. PMID:33400642
European context of the diversity and phylogenetic position of SARS-CoV-2 sequences from Polish COVID-19 patients. PMID:33400131
Reduced Environmental Microbial Diversity on the Cuticle and in the Galleries of a Subterranean Termite Compared to Surrounding Soil. PMID:33399932
Neutralising antibodies in Spike mediated SARS-CoV-2 adaptation. PMID:33398302
Improved metagenome binning and assembly using deep variational autoencoders. PMID:33398153
Hidden Diversity within Common Protozoan Parasites as Revealed by a Novel Genomotyping Scheme. PMID:33397705
Salmonella Genomics and Population Analyses Reveal High Inter- and Intraserovar Diversity in Freshwater. PMID:33397693
Re-Evaluating the Internal Phylogenetic Relationships of Collembola by Means of Mitogenome Data. PMID:33396901
Darwin Returns to the Galapagos: Genetic and Morphological Analyses Confirm the Presence of Tramea darwini at the Archipelago (Odonata, Libellulidae). PMID:33396276
Insights into the origin and diversification of bovine viral diarrhea virus 1 subtypes. PMID:33392819
Diversification and selection pattern of CYP6B genes in Japanese Papilio butterflies and their association with host plant spectra. PMID:33391886
A Previously Undescribed Helotialean Fungus That Is Superabundant in Soil Under Maritime Antarctic Higher Plants. PMID:33391247
Comparative Genomic Analysis of Ochratoxin A Biosynthetic Cluster in Producing Fungi: New Evidence of a Cyclase Gene Involvement. PMID:33391201
The First Report for the Presence of Spiroplasma and Rickettsia in Red Palm Weevil Rhynchophorus ferrugineus (Coleoptera: Curculionidae) in Egypt. PMID:33389546
A phylogeny for the Drosophila montium species group: A model clade for comparative analyses. PMID:33387647
Eimeria varia Upton, Campbell, Weigel & McKown, 1990 is a Junior Synonym of Eimeria megabubonis Upton, Campbell, Weigel & McKown, 1990. PMID:33387271
Taxonomic study of a new green alga, Annulotesta cochlephila gen. et sp. nov. (Kornmanniaceae, Ulvales, Ulvophyceae), growing on the shells of door snails. PMID:33387091
Phytoactinopolyspora limicola sp. nov., an alkaliphilic actinomycete isolated from a soda alkali-saline soil. PMID:33386868
Plastid genome evolution in Amazonian açaí palm (Euterpe oleracea Mart.) and Atlantic forest açaí palm (Euterpe edulis Mart.). PMID:33386578
Frequent Association of Colletotrichum Species with Citrus Fruit and Leaf Spot Disease Symptoms and their Genetic Diversity in Ethiopia. PMID:33384880
Implication of the Identification of an Earlier Pseudorabies Virus (PRV) Strain HLJ-2013 to the Evolution of Chinese PRVs. PMID:33384679
A phylogenetic and taxonomic review of baviine jumping spiders (Araneae, Salticidae, Baviini). PMID:33384565
Effectors with Different Gears: Divergence of Ustilago maydis Effector Genes Is Associated with Their Temporal Expression Pattern during Plant Infection. PMID:33383948
Click Beetle Mitogenomics with the Definition of a New Subfamily Hapatesinae from Australasia (Coleoptera: Elateridae). PMID:33383651
Genome-Wide Analysis of LysM-Containing Gene Family in Wheat: Structural and Phylogenetic Analysis during Development and Defense. PMID:33383636
Trypanosoma (Herpetosoma) diversity in rodents and lagomorphs of New Mexico with a focus on epizootological aspects of infection in Southern Plains woodrats (Neotoma micropus). PMID:33382847
Mixed cytomegalovirus genotypes in HIV-positive mothers show compartmentalization and distinct patterns of transmission to infants. PMID:33382036
IMGT® Biocuration and Comparative Analysis of Bos taurus and Ovis aries TRA/TRD Loci. PMID:33379283
Origin and evolution of a gibberellin-deactivating enzyme GAMT. PMID:33376939
Natural Variation and Domestication Selection of ZmCKX5 with Root Morphological Traits at the Seedling Stage in Maize. PMID:33375032
Identification of Rice Seed-Derived Fusarium Spp. and Development of LAMP Assay against Fusarium Fujikuroi. PMID:33374990
Genomic Analysis of Antimicrobial Resistance Genotype-to-Phenotype Agreement in Helicobacter pylori. PMID:33374988
New Insights on the Zika Virus Arrival in the Americas and Spatiotemporal Reconstruction of the Epidemic Dynamics in Brazil. PMID:33374816
Structural analysis of RIG-I-like receptors reveals ancient rules of engagement between diverse RNA helicases and TRIM ubiquitin ligases. PMID:33373584
Non-Destructive Genotyping of Honeybee Queens to Support Selection and Breeding. PMID:33371316
Phylogenomics of 8,839 Clostridioides difficile genomes reveals recombination-driven evolution and diversification of toxin A and B. PMID:33370413
Identification and characterization of Cercospora beticola necrosis-inducing effector CbNip1. PMID:33369055
HAPHPIPE: Haplotype Reconstruction and Phylodynamics for Deep Sequencing of Intrahost Viral Populations. PMID:33367849
Variation Patterns of NLR Clusters in Arabidopsis thaliana Genomes. PMID:33367252
Phylogenomic Insights into Deep Phylogeny of Angiosperms Based on Broad Nuclear Gene Sampling. PMID:33367231
The complete mitochondrial genome of Ricania speculum (Walker, 1851) (Hemiptera: Ricaniidae): investigation of intraspecific variations on mitochondrial genome. PMID:33367111
The complete chloroplast genome sequence of Laplacea alpestris and its phylogenetic position. PMID:33367108
A chloroplast genome of Forsythia saxatilis (Nakai) Nakai, an endemic species in Korea. PMID:33367083
The complete chloroplast genome of Polygonatum odoratum (Liliaceae), an endemic medicinal herb. PMID:33367082
The complete plastome of Nannoglottis ravida, an extremely endangered species in the Qinghai-Tibet Plateau. PMID:33367078
Chloroplast characterizations of a Phalaenopsis native to China, Phalaenopsis mannii (Orchidaceae). PMID:33367077
Characterization of the complete chloroplast genome of Populus deltoides Zhonglin 2025. PMID:33367076
The complete chloroplast genome of Polygonatum odoratum (Liliaceae), an endemic medicinal herb. PMID:33367072
The complete chloroplast genome of Douinia plicata (Lindb.) Konstant. & Vilnet (Scapaniaceae, Jungermanniales). PMID:33367065
Complete chloroplast genome sequence of Murraya paniculata (Rutaceae): a widely used folk medicinal herb. PMID:33367064
Characterization of the complete mitochondrial DNA sequence of the Lagocephalus gloveri (Tetraodontidae, Tetraodontiformes). PMID:33367059
Complete chloroplast genome sequence of an alpine rhubarb Rheum likiangense. PMID:33367058
The complete chloroplast genome of Amana baohuaensis (Liliaceae). PMID:33367052
The complete chloroplast genome sequence of medicinal plant: Astragalus laxmannii (Fabaceae). PMID:33367050
The complete chloroplast genome of Edgeworthia chrysantha (Thymelaeaceae). PMID:33367048
Next-generation sequencing yields a nearly complete mitochondrial genome of Plestiodon liui (Reptilia, Squamata, Scincidae) endemic to China. PMID:33367047
Chloroplast genome sequence of a yellow colored rice (Oryza sativa L.): insight into the genome structure and phylogeny. PMID:33367045
The complete chloroplast genome of Zanthoxylum acanthopodium DC. (Rutaceae) and its phylogenetic analysis. PMID:33367039
Mitochondrial genome and phylogenetic analysis of Psylliodes punctifrons Baly (Coleoptera: Chrysomelidae: Galerucinae). PMID:33367037
The complete chloroplast genome of an endangered orchid Paphiopedilum spicerianum. PMID:33367030
The complete chloroplast genome of Hydrangea davidii (Hydrangeaceae). PMID:33367027
The mitochondrial genome and phylogenetic position of a marine snail Nerita (Heminerita) japonica (Gastropoda: Neritimorpha: Neritidae). PMID:33367024
The complete chloroplast genome sequence of Meconopsis punicea. PMID:33367023
Complete mitochondrial genome sequence of Afla-Guard®, commercially available non-toxigenic Aspergillus flavus. PMID:33367022
Complete mitochondrial genome sequence of Aspergillus flavus SRRC1009: insight of intraspecific variations on A. flavus mitochondrial genomes. PMID:33367020
The complete mitochondrial genome of the estuarine amphipod Grandidierella osakaensis (Crustacea: Amphipoda). PMID:33367014
The complete chloroplast genome of Eurya loquaiana (Pentaphylacaceae). PMID:33367013
The complete mitochondrial genome of Alphitobius diaperinus Panzer, 1797 (Coleoptera: Tenebrionidae). PMID:33367012
The complete chloroplast genome of Syringa oblata (Oleaceae). PMID:33367007
Characterization of the chloroplast genome of Calanthe henryi (Epidendroideae; Orchidaceae). PMID:33367005
The complete chloroplast genome of Agrimonia pilosa Ledeb. isolated in Korea (Rosaceae): investigation of intraspecific variations on its chloroplast genomes. PMID:33367001
The complete chloroplast genomes of the mangrove fern Acrostichum aureum. PMID:33366998
The complete chloroplast genome sequence of Clematis Montana Buch.-Ham. (Ranunculaceae) and its phylogenetic analysis. PMID:33366992
Complete chloroplast genome sequence of Ampelocalamus scandens (Arundinarodae). PMID:33366988
The complete chloroplast genome sequence of Carya illinoinensis cv. wichita and its phylogenetic analysis. PMID:33366987
The complete chloroplast genome of Camellia nitidissima (Theaceae). PMID:33366984
The complete plastome of a folk medicinal herb Isodon lophanthoides var. graciliflorus. PMID:33366980
The complete chloroplast genome sequence of Populus davidiana (Salicaceae). PMID:33366978
The complete chloroplast genome of Toxicodendron griffithii. PMID:33366976
Chloroplast genome and phylogenetic analyses of Poncirus trifoliata (Rutaceae). PMID:33366973
Chloroplast genome and phylogenetic analyses of Morus alba (Moraceae). PMID:33366972
Phylogenetic analyses of Lycium chinense (Solanaceae) and its coordinal species applying chloroplast genome. PMID:33366971
The complete chloroplast genome sequence of Chrysophyllum cainito, a semidomesticated species. PMID:33366970
The complete chloroplast genome sequence of Kadsura heteroclita. PMID:33366969
The complete chloroplast genome sequence of Populus tremula (Salicaceae). PMID:33366968
The complete chloroplast genome sequence of Litsea cubeba. PMID:33366967
Characterization of the complete mitochondrial genome of Drosophila busckii (Diptera: Drosophilidae). PMID:33366965
The complete chloroplast genome sequence of Sorbus amabilis (Rosaceae). PMID:33366963
The complete chloroplast genome of Zelkova serrata and its phylogenetic position within Ulmaceae. PMID:33366962
The complete chloroplast genome sequence of Artemisia ordosica. PMID:33366961
Characterization of the complete chloroplast genome of Salvia tiliifolia Vahl (Lamiaceae). PMID:33366958
The first complete chloroplast genome sequence of Paris polyphylla var. emeiensis, a rare and endangered species. PMID:33366957
Complete chloroplast genome sequence of Betula microphylla (Betulaceae). PMID:33366950
The complete chloroplast genome sequence of medicinal plant, Artemisia Montana. PMID:33366948
The complete chloroplast genome sequence of Begonia versicolor Irmsch. (Begoniaceae). PMID:33366938
The complete chloroplast genome of Myxopyrum hainanense and phylogenic analysis of Oleaceae. PMID:33366933
Characteristic and phylogenetic analyses of chloroplast genome for Mentha haplocalyx (Lamiaceae). PMID:33366931
Chloroplast genome for Crataegus pinnatifida (Rosaceae) and phylogenetic analyses with its coordinal species. PMID:33366930
The complete chloroplast genome sequence of Michelia floribunda. PMID:33366921
The complete mitochondrial genome of Riccia fluitans L. (Ricciaceae, Marchantiophyta): investigation of intraspecific variations on mitochondrial genomes of R. fluitans. PMID:33366919
Characterization of the complete chloroplast genome of Viburnum schensianum (Adoxaceae). PMID:33366910
The complete chloroplast genome of Philadelphus pekinensis Rupr. (Hydrangeaceae). PMID:33366907
The complete chloroplast genome sequence of Litsea garrettii. PMID:33366894
The complete mitochondrial genome of the meerkat (Suricata suricatta) and its phylogenetic relationship with other feliform species. PMID:33366892
The complete chloroplast genome and phylogenetic analysis of Cuminum cyminum. PMID:33366883
Complete mitochondrial genome of Eilema ussiricum (Lepidoptera: Erebidae). PMID:33366876
Complete mitochondrial genome of Dioryctria yiai (Lepidoptera: Pyralidae). PMID:33366875
The complete chloroplast genome of Aquilegia barnebyi, a basal eudicot species. PMID:33366874
De novo assembling a complete mitochondrial genome of Pedicularis rex (Orobanchaceae) using GetOrganelle toolkit. PMID:33366872
Characterization of the complete chloroplast genome of Salix maizhokunggarensis (Salicaceae). PMID:33366871
The complete chloroplast genome sequence of Altingia yunnanensis. PMID:33366869
The complete chloroplast genome sequence of Amomum villosum Lour. PMID:33366865
The complete chloroplast genome sequence of Taiwania flousiana. PMID:33366864
The complete chloroplast genome sequence of Michelia wilsonii: an endangered species in China. PMID:33366863
Characterization and phylogenetic analysis of the complete mitochondrial genome of Eristalia cerealis (Diptera: Syrphidae). PMID:33366848
The complete plastome of Hyacinthoides non-scripta (L.) Chouard ex Rothm. (Asparagaceae). PMID:33366847
Sequencing and characterization of mitochondrial genome of Idaea effusaria (Lepidoptera: Geometridae). PMID:33366846
The complete chloroplast genome sequence of Hippophae rhamnoides subsp. sinensis. PMID:33366837
The complete chloroplast genome of Pertya phylicoides (Asteraceae, Pertyeae): a shurby endemic species from China. PMID:33366828
The complete chloroplast genome of Styrax dasyanthus Perkins (Styracaceae). PMID:33366827
Characterization of the complete chloroplast genome of Hovenia acerba (Rhamnaceae). PMID:33366816
Characterization of the complete chloroplast genome of Prunus davidiana, an excellent horticultural species. PMID:33366815
Characterization of the complete mitochondrial genome of Caryopemon giganteus Pic (Coleoptera: Chrysomelidae: Bruchinae). PMID:33366814
The complete chloroplast genome sequence of Quercus phillyraeoides (Fagaceae). PMID:33366805
Characterization of the complete chloroplast genome of Gentiana rhodantha (Gentianaceae). PMID:33366804
Complete chloroplast genome sequences of Lagotis yunnanensis (Scrophulariaceae): an Endangered species endemic to the Hengduan Mountains region. PMID:33366802
The complete chloroplast genome sequence H olmskioldia sanguinea retz., an ornamental plant of Lamiaceae. PMID:33366801
Characterization of the complete chloroplast genome sequence of Anisodus acutangulus (Solanaceae). PMID:33366800
The complete chloroplast genome of Bougainvillea glabra. PMID:33366799
Characterization of the complete mitochondrial genome of the predatory mite Stratiolaelaps scimitus (Acari: Laelapidae). PMID:33366797
The complete chloroplast genome of Amomum tsao-ko. PMID:33366779
The complete chloroplast genome sequence of Plagiogyria euphlebia, a fascinating fern with important taxonomic significance. PMID:33366777
The complete chloroplast genome sequence of Magnolia maudiae. PMID:33366772
The complete plastome sequence of a subtropical tree Pyrus betulaefolia (Rosaceae). PMID:33366769
The complete chloroplast genome sequence of Styrax hemsleyanus (Styracaceae). PMID:33366759
The complete chloroplast genome sequence of Populus koreana (Salicaceae). PMID:33366754
Complete chloroplast genome sequence of Bambusa pervariabilis (Bambusodae). PMID:33366752
Characterization of the complete plastome of Saposhnikovia divaricata (Turcz.) Schischk. PMID:33366750
The complete plastid genome of Delonix regia (Hook.) Raf. (Leguminosae). PMID:33366749
Characterization of the complete chloroplast genome of Pterocarya stenoptera, a tall deciduous tree of the family Juglandaceae. PMID:33366746
The complete chloroplast genome sequence of Styrax calvescens Perk. (Styracaceae). PMID:33366743
The complete chloroplast genome sequence of Kadsura ananosma. PMID:33366742
The complete chloroplast genome of Cuscuta australis R. Br. (Convolvulaceae) and its phylogenetic implication. PMID:33366741
The complete chloroplast genome sequence of Afzelia xylocarpa. PMID:33366739
The complete chloroplast genome sequence of Xylia xylocarpa. PMID:33366732
Complete chloroplast genome sequence and phylogenetic analysis of Magnolia pilocarpa, a highly ornamental species endemic in central China. PMID:33366719
The complete chloroplast genome sequence of Pterocarpus macrocarpus. PMID:33366718
The complete chloroplast genome sequence of Fagraea fragrans. PMID:33366715
The complete chloroplast genome sequence of Dalbergia oliveri. PMID:33366713
Complete mitochondrial genome of Mycalesis intermedia (Lepidoptera: Nymphalidae). PMID:33366711
Whole chloroplast genome sequence of a subtropical tree Eriobotrya bengalensis (Rosaceae). PMID:33366708
The complete chloroplast genome of Semiliquidambar cathayensis (Hamamelidaceae). PMID:33366707
The first complete chloroplast genome of Hovenia acerba Lindl. PMID:33366691
The complete chloroplast genome of Cucumis anguria var. anguria (Cucurbitaceae) and its phylogenetic implication. PMID:33366689
Complete chloroplast genome sequence of Peganum harmala, an important medicinal plant. PMID:33366688
The complete chloroplast genome of a medicinal plant, Wikstroemia chamaedaphne (Thymelaeaceae). PMID:33366686
The complete chloroplast genome sequence of an invasive plant Solanum rostratum (Solanaceae). PMID:33366676
Characterization of the complete chloroplast genome of Calophaca sinica Rehd. PMID:33366671
Complete chloroplast genome sequence of Acer ginnala, an important ornamental tree. PMID:33366669
The complete chloroplast genome of Protea kilimandscharica Engl. (Proteaceae). PMID:33366666
Complete mitochondrial genome of Plodia interpunctella (Lepidoptera: Pyralidae). PMID:33366657
High-throughput sequencing-based assembly of chloroplast genomes of five pine tree species. PMID:33366655
The complete chloroplast genome of Potaninia mongolica (Rosaceae) from China. PMID:33366653
Characterization of the complete chloroplast genome of Cornus bretschneideri (cornaceae). PMID:33366639
Complete chloroplast genome sequence of Maytenus guangxiensis (celastraceae), a rare and critically endangered species endemic to China. PMID:33366636
The complete chloroplast genome sequence of Altingia excelsa. PMID:33366635
The re-sequencing of complete chloroplast genome of Cinnamomum camphora (Lauraceae) from Quanzhou, China. PMID:33366629
The complete chloroplast genome sequence of Kadsura interior. PMID:33366627
The complete chloroplast genome of Eleutherococcus trifoliatus (Araliaceae): a wild edible plant in the coastal region of South China. PMID:33366626
Characterization of the complete chloroplast genome of Saussurea involuerata (Compositae), an endangered species endemic to China. PMID:33366625
Characterization of the complete chloroplast genome of Leycesteria formosa wall. (Caprifoliaceae), a medicinal plant in southwest China. PMID:33366620
The complete mitochondrial genome of Aphaenogaster famelica (Smith, 1874) (Hymenoptera: Formicidae). PMID:33366617
The complete chloroplast genome sequence of Acorus gramineus (Acoraceae). PMID:33366615
The complete mitochondrial genome of the Xinyuan honey bee, Apis mellifera sinisxinyuan (Insecta: Hymenoptera: Apidae). PMID:33366614
Characterization of the complete chloroplast genome of a well-known Chinese medicinal herb, Scrophularia ningpoensis. PMID:33366613
The complete chloroplast genome sequence of Citrus maxima (Burm.) Merr. 'Guanximiyou'. PMID:33366612
Chloroplast characterization and phylogenetic relationship of Cymbidium aloifolium (Orchidaceae). PMID:33366610
The complete chloroplast genome sequence of Aglaia odorata. PMID:33366607
The complete chloroplast genome of Acer pentaphyllum (Sapindaceae), a critically endangered maple endemic to China. PMID:33366606
The complete chloroplast genome sequence of Santalum album. PMID:33366578
Characterization of the complete chloroplast genome of Ottelia alismoides (Hydrocharitaceae), a vulnerable submerged macrophyte in China. PMID:33366577
Characterization and phylogenetic analysis of the complete plastome of Alopecurus japonicus (Gramineae), an annual weed. PMID:33366573
Complete mitochondrial genome of Pseudachorutes palmiensis (Collembola: Neanuridae). PMID:33366572
The complete plastid genome of Holcoglossum singchianum (Orchidaceae, Vandeae). PMID:33366570
The complete plastid genome of Thrixspermum tsii (Orchidaceae, Aeridinae). PMID:33366567
The complete chloroplast genome of Morinda citrifolia (noni). PMID:33366564
The complete chloroplast genome of Saposhnikovia divaricata. PMID:33366556
The complete mitochondrial genome of Rotunda rotundapex (Miyata & Kishida, 1990) (Lepidoptera: Bombycidae). PMID:33366554
Complete chloroplast genome of Helicia nilagirica Bedd. and its phylogenetic analysis. PMID:33366548
The complete mitochondrial genome of Orthonychiurus folsomi (Collembola: Onychiuridae). PMID:33366547
The complete chloroplast genome sequence of Cinnamomum kotoense. PMID:33366543
Characterization of the complete chloroplast genome of orchid family species Cymbidium bicolor (Orchidaceae). PMID:33366539
Complete chloroplast genome sequence of Sophora japonica 'JinhuaiJ2' (Papilionaceae), an important traditional chinese herb. PMID:33366537
Complete mitochondrial genome of Sesia siningensis (Lepidoptera: Sesiidae). PMID:33366536
The complete chloroplast genome of a species Cansjera rheedei (Opiliaceae). PMID:33366535
Complete chloroplast genome sequence of Gigantochloa verticillata (Bambusodae). PMID:33366532
The complete chloroplast genome of Reevesia thyrsoidea (Malvaceae). PMID:33366525
The first complete chloroplast genome sequence of the medicinal plant Bletilla formosana (Orchidaceae). PMID:33366522
The complete chloroplast genome sequence of Populus deltoides 'Siyang-2'. PMID:33366521
Complete plastid genome of Holcoglossum tsii (Orchidaceae, Aeridinae) and phylogenetic analysis. PMID:33366520
The second complete chloroplast genome sequence of the Viburnum erosum (Adoxaceae) showed a low level of intra-species variations. PMID:33366517
The complete mitochondrial genome of the critically endangered Atlantic humpback dolphin, Sousa teuszii (Kükenthal, 1892). PMID:33366511
The complete chloroplast genome sequence of a rambler rose, Rosa wichuraiana (Rosaceae). PMID:33366509
The complete chloroplast genome sequence of Aconitum austroyunnanense W. T. Wang (Ranunculaceae): a medicinal plant endemic to China. PMID:33366507
The complete mitochondrial genome of the aquatic coralsnake Micrurus surinamensis (Reptilia, Serpentes, Elapidae). PMID:33366501
Complete plastome sequence of Acorus tatarinowii (Acoraceae), a traditional Chinese medicinal plant from Xishuangbanna, Yunnan, China. PMID:33366498
The complete chloroplast genome of an endangered and endemic species, Acer yangbiense (Aceraceae). PMID:33366497
The complete chloroplast genome sequence of Garcinia pedunculata. PMID:33366495
The complete chloroplast genome sequence of Phoebe puwenensis. PMID:33366494
The complete chloroplast genome sequence of Caryodaphnopsis tonkinensis. PMID:33366487
Characterization of the complete chloroplast genome of Linnaea borealis, a rare, clonal self-incompatible plant. PMID:33366486
The complete chloroplast genome sequence of Cinnamomum longipetiolatum. PMID:33366485
Characterization of the complete chloroplast genome of Salix variegata (Salicaceae). PMID:33366484
Complete chloroplast genome sequence of Ilex latifolia (Aquifoliaceae), a traditional Chinese tea. PMID:33366481
Complete chloroplast genome sequence of Stephania kwangsiensis (Menispermaceae), a rare and critically endangered species endemic to China. PMID:33366480
Characterization of the complete chloroplast genome of Allium przewalskianum (Amaryllidaceae). PMID:33366479
The complete chloroplast genome of Primula beesiana, an ornamental alpine plant from SW China. PMID:33366477
The complete chloroplast genome sequence of a Castanea henryi cultivar. PMID:33366476
The complete chloroplast genome sequence of Populus mexicana (Salicaceae). PMID:33366473
The complete chloroplast genome of Leptodermis scabrida (Rubiaceae): an endemic shrub in Himalaya-Hengduan Mountains. PMID:33366471
Complete chloroplast genome of Physalis chenopodifolia Lam. (Solanaceae). PMID:33366468
The complete chloroplast genome sequence of a traditional Chinese medicine: Achyranthes bidentata (Amaranthaceae). PMID:33366466
Characterization and phylogenetic analysis of the complete chloroplast genome of Cercis canadensis 'Forest Pansy'. PMID:33366464
The complete mitochondrial genome of Ochetellus glaber (Mayr, 1862) (Hymenoptera:Formicidae). PMID:33366461
Complete chloroplast genome of Meconopsis integrifolia (Papaveraceae). PMID:33366459
Characterization of the complete chloroplast genome of traditional Tibetan herb, Rheum Pumilum Maxim. (Polygonaceae). PMID:33366455
The complete chloroplast genome of Quercus robur 'Fastigiata'. PMID:33366453
The complete chloroplast genome of Liparis nervosa (Orchidaceae). PMID:33366450
The complete chloroplast genome sequence of horticultural plant, Impatiens hawkeri (Sect. Balsaminacea, Impatiens). PMID:33366448
The complete chloroplast genome of Styrax faberi Perk. (Styracaceae). PMID:33366440
The complete chloroplast genome sequence of Actinidia styracifolia C. F. Liang. PMID:33366436
The complete chloroplast genome sequence of a medicinal herb Liriope Platyphylla (Asparagaceae). PMID:33366434
Characterization of the complete chloroplast genome of a medicinal plant, Wikstroemia indica (Thymelaeaceae). PMID:33366433
The complete chloroplast genome of Styrax japonicus. PMID:33366432
The complete chloroplast genome of Forsythia mira, an endemic medicinal shrub in China. PMID:33366420
The mitochondrial genome of Tetrahymena rostrata. PMID:33366418
Complete chloroplast genome sequences of two species used for Tibetan medicines, Meconopsis punicea vig. and M. henrici vig. (Papaveraceae). PMID:33366416
Characterization of the complete chloroplast genome of Delphinium grandiflorum L. PMID:33366410
Complete chloroplast genome of Panax japonicus var. major (Burkill) C. Y. Wu & K. M. Feng (Araliaceae) and phylogenetic analysis. PMID:33366400
The complete chloroplast genome sequence of an alpine wildflower, Philadelphus calvescens (Rehd.) S. M. Hwang (Saxifragaceae). PMID:33366399
Complete chloroplast genome sequence of Dysosma versipellis (Berberidaceae), a rare and threatened species endemic to China. PMID:33366390
Characterization of the complete plastome of Alopecurus aequalis (Poaceae), a widespread weed. PMID:33366389
The complete plastid genome of Iris domestica: a traditional Chinese medicine. PMID:33366388
The complete plastid genome sequence of Phyllodium pulchellum (L.) Desv. (Leguminosae). PMID:33366385
The complete chloroplast genome of Triosteum himalayanum (Caprifoliaceae), a perennial alpine herb. PMID:33366379
Characterization of the complete chloroplast genome of Phleum pratense L. cv. Minshan. PMID:33366372
The complete chloroplast genome and phylogenetic analysis of Veratrum mengtzeanum Loes. F. (Liliaceae). PMID:33366367
Complete chloroplast genome sequence of Swertia mileensis (Gentianaceae): a medicinal species endemic to China. PMID:33366365
Complete chloroplast genome sequence of Pueraria thomsonii, an important traditional Chinese medicine plant. PMID:33366364
The complete chloroplast genome of Theobroma grandiflorum, an important tropical crop. PMID:33366361
Characterization of the complete chloroplast genome of Ulleung-do Island endemic, Zabelia insularis (Caprifoliaceae), in Korea. PMID:33366353
Characterization of the complete chloroplast genome of Ginkgo biloba L. (Ginkgoaceae), an endangered species endemic to China. PMID:33366350
The complete chloroplast genome sequence of Camellia granthamiana. PMID:33366343
The complete chloroplast genome sequence of Moringa oleifera Lam. (Moringaceae). PMID:33366334
The complete chloroplast genomes of rare medical herb Glycyrrhiza inflata and its relative G. aspera (Fabaceae). PMID:33366329
The complete chloroplast genome of Changium smyrnioides Wolff. PMID:33366328
Complete chloroplast genome sequence of Hopea chinensis (Dipterocarpaceae), a rare and critically endangered species. PMID:33366327
Characterization of the complete chloroplast genome of Paederia scandens (Rubiaceae): a Chinese folk medicinal plant. PMID:33366325
Whole plastid genome of Anemone taipaiensis (Ranunculaceae), an endemic herb plant in China. PMID:33366321
Characterization of the complete plastid genome of Acer tsinglingense, an endemic tree species in China. PMID:33366320
The complete chloroplast genome sequence of Melliodendron wangianum (Styracaceae). PMID:33366314
The complete chloroplast genome sequence of Ficus hirta (Moraceae). PMID:33366308
Complete chloroplast genome sequence of Ardisia gigantifolia (Myrsinaceae), a vulnerable medicinal plant. PMID:33366306
The complete mitogenome of the invasive Japanese mud snail Batillaria attramentaria (Gastropoda: Batillariidae) from Elkhorn Slough, California, USA. PMID:33366303
Complete mitochondrial sequence of Auricularia heimuer, one of the most popular edible fungus in China. PMID:33366302
Sequencing and phylogenetic analysis of the complete chloroplast genome of Cassia tora Linn. PMID:33366301
The complete chloroplast genome sequence of Eranthis stellate (Ranunculaceae). PMID:33366300
Characterization of the complete plastid genome of fireweed, Epilobium angustifolium, Shaanxi, China. PMID:33366299
Complete chloroplast genome sequence of Mirabilis himalaica (Nyctaginaceae). PMID:33366298
The complete chloroplast genome sequences of Zanthoxylum nitidum var. nitidum and Z. nitidum var. tomentosum. PMID:33366297
Complete chloroplast genome sequence of Bougainvillea Spectabilis (Nyctaginaceae). PMID:33366293
The complete chloroplast genome of Cymbidium changningense (Orchidaceae). PMID:33366285
The complete plastid genome of Vanda xichangensis (Orchidaceae, Aeridinae). PMID:33366282
The complete chloroplast genome sequence of Casimiroa edulis. PMID:33366279
The complete chloroplast genome sequence of Phlegmariurus carinatus. PMID:33366278
The complete mitochondrial genome of the national bird of Peru: Rupicola peruvianus (Aves, Passeriformes, Cotingidae). PMID:33366277
The complete chloroplast genome sequence of the medicinal plant Paris polyphylla (Melanthiaceae). PMID:33366275
Characterization of the complete chloroplast genome of Ajuga forrestii (Lamiaceae), a medicinal plant in southwest of China. PMID:33366274
Complete chloroplast genome sequence of Gynostemma pentaphyllum (Cucurbitaceae), a perennial medicinal herb. PMID:33366273
Complete chloroplast genome sequence of Zanthoxylum nitidum (Rutaceae), an important medicinal shrub. PMID:33366272
The complete chloroplast genome sequence of Pericampylus glaucus. PMID:33366271
The complete chloroplast genome sequence of Cautleya gracilis. PMID:33366270
The complete chloroplast genome sequence of Pittosporum kerrii: the first Pittosporaceae plastome. PMID:33366269
Next-generation sequencing yields the complete organellar genomes of kelp Lessonia flavicans (Lessoniaceae, Phaeophyceae) from the Sub-Antarctic ecoregion of Magallanes, Chile. PMID:33366267
The complete chloroplast genome sequence of Pometia tomentosa. PMID:33366265
The complete chloroplast genome sequence of Pellacalyx yunnanensis: an endangered species in China. PMID:33366264
The complete chloroplast genome sequence of Aphanamixis polystachya. PMID:33366262
Characterization of the complete mitochondrial genome of Homidia socia (Collembola: Entomobryidae). PMID:33366261
The complete chloroplast genome of Mahonia eurybracteata subsp. Ganpinensis (H.Lév.) T. S. Ying & Boufford (Berberidaceae). PMID:33366258
The complete chloroplast genome sequence of Populus tremuloides (Salicaceae). PMID:33366252
The complete mitochondrial genome of the fall armyworm, Spodoptera frugiperda Smith, 1797 (Lepidoptera; Noctuidae), firstly collected in Korea. PMID:33366251
The complete chloroplast genome sequence of Mytilaria laosensis. PMID:33366250
Characterization of the complete chloroplast genome of an annual halophyte, Chenopodium glaucum (Amaranthaceae). PMID:33366241
Chloroplast genome of critically endangered Cotoneaster wilsonii (Rosaceae) endemic to Ulleung Island, Korea. PMID:33366238
The complete chloroplast genome of Paris polyphylla var. chinensis, an endemic medicinal herb in China. PMID:33366236
The complete chloroplast genome sequence and phylogenetic analysis of the medicinal plant Lysimachia hemsleyana. PMID:33366231
The complete chloroplast genome of Impatiens uliginosa Franch., an endemic species in Southwest China. PMID:33366215
The complete chloroplast genome sequence of Brasenia schreberi (Cabombaceae). PMID:33366213
The complete plastid genome of Chinese cinnamon, Cinnamomum aromaticum Nees (Lauraceae). PMID:33366208
The complete chloroplast genome sequence of Erigeron breviscapus and Erigeron multiradiatus (Asteraceae). PMID:33366206
Complete chloroplast genome sequence of Annamocarya sinensis (Juglandaceae), an endangered perennial plant. PMID:33366197
Complete chloroplast genome sequences of two Amomum species (Zingiberaceae). PMID:33366195
Next-generation sequencing yields mitochondrial genome of Coccidophilus cariba Gordon (Coleoptera: Coccinellidae) from museum specimen. PMID:33366188
The complete chloroplast genome sequence of Oxytropis bicolor Bunge (Fabaceae). PMID:33366179
The complete chloroplast genome of Cotoneaster schantungensis. PMID:33366178
The complete chloroplast genome of Cirsium setosum and its phylogenetic analysis. PMID:33366176
The first complete chloroplast genome of Liparis nervosa and its phylogenetic position within Orchidaceae. PMID:33366174
The complete chloroplast genome sequence of Prunus Cerasifera Ehrh. 'Pissardii' (Rosaceae). PMID:33366170
The complete chloroplast genome sequence of Kerria japonica (L.) DC. 'pleniflora' (Rosaceae). PMID:33366160
The complete mitochondrial genome of heartbreak grass Gelsemium elegans (Gardner & Champ.) Benth. (Gelsemiaceae). PMID:33366159
Complete chloroplast genome sequence of Heteroplexis sericophylla (Asteraceae), a rare and vulnerable species endemic to China. PMID:33366158
The complete chloroplast genome of a new candidate cultivar, Sang Jae, of Abeliophyllum distichum Nakai (Oleaceae): initial step of A. distichum intraspecies variations atlas. PMID:33366157
The complete chloroplast genome of a new candidate cultivar, Dae Ryun, of Abeliophyllum distichum Nakai (Oleaceae). PMID:33366156
Characterization of the complete chloroplast genome of Microcycas calocoma (Zamiaceae), an Endangered monotypic cycad species from Cuba. PMID:33366148
Characterization of the complete chloroplast genome of Buddleja alternifolia (Buddleiaceae). PMID:33366145
Complete plastid genome of Vanda concolor (Orchidaceae, Aeridinae). PMID:33366144
The complete chloroplast genome of Vitis amurensis Rupr., an economic plant to China. PMID:33366142
Characterization of the complete chloroplast genome of Epimedium brevicornu (Berberidaceae). PMID:33366141
The complete chloroplast genome sequence of Melliodendron xylocarpum (Styracaceae). PMID:33366139
The complete chloroplast genome sequence of Cynanchum forrestii Schltr. (Asclepiadaceae) and its phylogenetic analysis. PMID:33366138
The complete chloroplast genome of Primula bulleyana, a popular ornamental species. PMID:33366137
The complete chloroplast genome sequence of Spiraea blumei G. Don (Rosaceae). PMID:33366136
The complete chloroplast genome sequence of Ludisia discolor from Hainan of China. PMID:33366132
Characterization of the complete chloroplast genome of Magnolia wilsonii (Magnoliaceae). PMID:33366130
The complete plastid genome of cherry plants Prunus discoidea (Rosaceae) and its phylogenetic implication. PMID:33366121
Characterisation of the complete chloroplast genome of Gentiana delavayi Franch. (gentianaceae), a medicinal plant in southwest of China. PMID:33366120
The complete chloroplast genome of Dipterocarpus turbinatus Gaertn. F. PMID:33366119
The first complete chloroplast genome of Quercus coccinea (Scarlet Oak) and its phylogenetic position within Fagaceae. PMID:33366118
The chloroplast genome of silk floss tree (Ceiba speciosa). PMID:33366117
The complete chloroplast genome of Yunnanopilia longistaminea (Opiliaceae), an endemic species in southwest China. PMID:33366113
The complete plastome of Peucedanum praeruptorum (Apiaceae). PMID:33366108
The complete chloroplast genome sequence of the medicinal plant Salvia yunnanensis C. H. Wright. (Lamiaceae). PMID:33366104
The complete chloroplast genome of Mexican marigold (Tagetes erecta L., Asteraceae). PMID:33366097
The complete chloroplast genome sequence of Rosa laevigata (Rosaceae). PMID:33366083
The complete chloroplast genome sequence of the medicinal plant Paeonia delavayi Franchet. (Paeoniaceae). PMID:33366082
The complete chloroplast genome sequence of Eriobotrya fragrans. PMID:33366080
Complete chloroplast genome of a widely distributed species in southwest China, Hemiphragma heterophyllum Wall. (Scrophulariaceae). PMID:33366072
Complete chloroplast genome of Exacum affine (Gentianaceae): the first plastome of the tribe Exaceae in the family Gentianaceae. PMID:33366071
Characterization of the complete chloroplast genome of Saussurea integrifolia (Compositae). PMID:33366059
Characterization of the complete chloroplast genome of Sinosenecio oldhamianus (Compositae). PMID:33366056
The complete chloroplast genome sequence of Kandelia obovata (Rhizophoraceae). PMID:33366055
The complete chloroplast genome sequence of Euscaphis japonica (Staphyleaceae). PMID:33366050
The complete chloroplast genome sequence of Goodyera foliosa（Orchidaceae）. PMID:33366047
The complete chloroplast genome sequence of Canarium album. PMID:33366044
The complete chloroplast genome sequence of Spathodea campanulata. PMID:33366043
The complete chloroplast genome sequence of Cipadessa cinerascens. PMID:33366042
The complete chloroplast genome sequence of Ziziphus incurva. PMID:33366041
The complete chloroplast genome sequence of Celtis tetrandra. PMID:33366040
The complete plastid genome of Hong Kong Orchid Tree, Bauhinia × blakeana Dunn (Leguminosae). PMID:33366036
The complete chloroplast genome of Cratoxylum cochinchinense (Hypericaceae). PMID:33366035
The complete mitogenome of the Arctic moss Aulacomnium turgidum (Wahlenb.) Schwaegr. PMID:33366032
The complete mitochondrial genome of Gruberia lanceolata (Gruber, 1884) Kahl, 1932 (Ciliophora: Heterotrichea). PMID:33366031
Complete mitochondrial genome sequence of lettuce pathogenic fungus, Fusarium oxysporum f. sp. lactucae 09-002. PMID:33366027
The complete chloroplast genome of Salix psamaphila, a desert shrub in northwest China. PMID:33366026
Complete plastid genome of Dendrobium naungmungense (Orchidaceae). PMID:33366022
The complete chloroplast genome of a mangrove Kandelia obovata Sheue, Liu & Yong. PMID:33366018
The complete chloroplast genome of newly alien medicinal and toxic species, Zaleya pentandra (L.) C.Jeffrey (Aizoaceae), in China. PMID:33366017
The complete chloroplast genome of Aconitum coreanum (H. Lév.) Rapaics (Ranunculaceae). PMID:33366014
The complete chloroplast genome of Osmanthus serrulatus rehd., a natural sweet olive endemic to China. PMID:33366010
Characterization of the complete chloroplast genome of the woody sow-thistle, Sonchus leptocephalus (Asteraceae) endemic to the Canary Islands. PMID:33366006
The complete chloroplast genome of the Abies yuanbaoshanensis, an endangered Pinaceae species in Southern China. PMID:33366005
The complete chloroplast genome of a medical herb, Halenia elliptica D.Don (Gentianaceae), from Qinghai-Tibet Plateau in China. PMID:33366003
The complete chloroplast genome sequence of Vitis davidii Foex strain 'SJTU003'. PMID:33365998
The complete plastome of Daphne laureola L. (Thymelaeaceae). PMID:33365995
Characterization of the complete plastome of Elymus tangutorum (Poaceae: Triticeae). PMID:33365991
Characterization of the complete chloroplast genome of Leptochilus decurrens (Polypodiaceae), a least concern folk medicinal fern. PMID:33365986
The complete chloroplast genome sequence of Onosma paniculatum Bur. et Franch. (Boraginaceae), a medicinal plant in Yunnan and its adjacent regions. PMID:33365979
Characterization of the complete chloroplast genome of medicinal tea tree (Melaleuca alternifolia). PMID:33365968
The complete chloroplast genome sequence of Xylosma congesta. PMID:33365957
The complete chloroplast genome sequence of Viburnum erosum (Adoxaceae). PMID:33365955
Complete chloroplast genome of Isoetes sinensis, an endemic fern in China. PMID:33365954
The complete chloroplast genome of Laurocerasus zippeliana (Rosaceae). PMID:33365948
The complete chloroplast genome sequence of Abies chensiensis (Pinaceae). PMID:33365947
Characterization of the complete plastome of Ophrys aveyronensis, a Euro-Mediterranean orchid with an intriguing disjunct geographic distribution. PMID:33365944
Complete chloroplast genome sequence of Semiliquidambar cathayensis (hamamelidaceae), a rare and endangered species endemic to China. PMID:33365942
Complete chloroplast genome of Eurycorymbus Cavaleriei (Sapindaceae), a tertiary relic rare tree. PMID:33365941
The complete chloroplast genome of alien invasive species, Diodia virginiana L. (rubiaceae), in China. PMID:33365940
The complete mitochondrial genome of the hybrid of Haliotis discus hannai (♀) × Haliotis Iris (♂). PMID:33365936
The complete chloroplast genome sequence of Chimonanthus praecox cv. concolor. PMID:33365934
The complete chloroplast genome sequence of Flacourtia jangomas. PMID:33365932
Complete mitochondrial genome sequence of lettuce pathogenic fungus, Fusarium oxysporum f. sp. lactucae 16-086. PMID:33365930
The complete plastome of Taxillus vestitus (Loranthaceae), a hemiparasitic plant. PMID:33365912
Complete plastome sequence of Eustoma grandiflorum (Gentianaceae), a popular cut flower. PMID:33365900
Complete mitochondrial genomes of two scaphopod molluscs. PMID:33365899
Complete mitochondrial genome of the sea star Archaster typicus (Asteroidea: Archasteridae). PMID:33365885
Characterization of the plastid genome of the monotypic genus Bryocarpum (Primulaceae). PMID:33365881
The complete chloroplast genome of Elytranthe Albida (Loranthaceae), a hemiparasitic shrub. PMID:33365876
Characterization of the complete plastome of Dendrophthoe pentandra (Loranthaceae), a stem hemiparasite. PMID:33365870
The complete mitochondrial genome of Ceutorhynchus obstrictus (Marsham, 1802) (Coleoptera: Curculionidae). PMID:33365869
Complete chloroplast genome sequence of Taxillus chinensis (Loranthaceae): a hemiparasitic shrub in South China. PMID:33365863
The complete chloroplast genome of an endangered species Cymbidium mastersii (Orchidaceae). PMID:33365859
Characterization of the complete chloroplast genome of Boschniakia himalaica J. D. Hooker & Thomson (Orobanchaceae), a medicinal species in southwest China. PMID:33365857
Characterization of the complete chloroplast genome of Scutellaria amoena C. H. Wright (Lamiaceae), a medicinal plant in southwest China. PMID:33365854
The complete chloroplast genome sequence of the medicinal plant Colquhounia coccinea var. mollis (Lamiaceae). PMID:33365853
The complete chloroplast genome sequence of Docynia indica (Wall.) Decne. PMID:33365849
The complete chloroplast genome of Curcuma longa L. (Zingiberaceae). PMID:33365848
The complete mitochondrial genome of Paracolopha morrisoni (Baker, 1919) (Hemiptera: Aphididae). PMID:33365845
The complete chloroplast genome sequence of Rhodiola sacra (Prain ex Hamet) S. H. Fu. PMID:33365843
Complete chloroplast genome sequence of Heteroplexis incana (Asteraceae), a rare species endemic to China. PMID:33365842
The complete chloroplast genome sequence of Scurrula parasitica (Loranthaceae). PMID:33365841
Complete chloroplast genome of Mesua ferrea: the first Calophyllaceae plastome. PMID:33365840
Complete chloroplast genome of Toona sinensis (Meliaceae), a goluptious 'tree vegetables'. PMID:33365839
The complete plastid genome of Camellia Octopetala (Theaceae). PMID:33365834
The complete chloroplast genome of Uvaria macrophylla Roxb. (Annonaceae). PMID:33365833
The complete mitochondrial genome of Aphis gossypii Glover, 1877 (Hemiptera: Aphididae) collected in Korean peninsula. PMID:33365831
Chloroplast genome structure and phylogeny of Spiranthes sinensis, an endangered medicinal orchid plant. PMID:33365826
The complete chloroplast genome sequence of Olea ferruginea. PMID:33365824
The complete chloroplast genome sequence of Dendrocalamus sinicus. PMID:33365823
The complete chloroplast genome sequence of Rubus eucalyptus (Rosaceae). PMID:33365817
Complete chloroplast genome of Chloranthus henryi (chloranthaceae). PMID:33365812
The complete chloroplast genome of Leucobryum juniperoideum (brid.) C. Müll. (Leucobryaceae, Bryophyta). PMID:33365811
The complete chloroplast genome of Sesbania cannabina. PMID:33365808
Complete chloroplast genome of an orchid species Cymbidium floribundum Lindl. PMID:33365802
Complete mitochondrial genome of the Antarctic fur seal (Arctocephalus gazella). PMID:33365800
The complete plastid genome of Zenia insignis Chun (Leguminosae). PMID:33365795
Chloroplast genome structure and phylogenetic position of Ruppia sinensis Shuo Yu & den Hartog. PMID:33365790
Complete plastome sequence of Rumex japonicus (Polygonaceae) in Dok-do Island, Korea. PMID:33365778
Complete chloroplast genome sequence of bamboo Dendrocalamopsis vario-striata (Gramineae Bambusoideae). PMID:33365769
Characterization of the complete chloroplast genome of Allium tuberosum. PMID:33365764
The complete chloroplast genome of Quercus fabri (Fagaceae) from China. PMID:33365761
The complete chloroplast genome sequence of precious tree, Magnolia baillonii. PMID:33365753
The complete chloroplast genome and phylogenetic analysis of Begonia pulchrifolia, a near endangered Begoniaceae plant. PMID:33365748
The complete chloroplast genome of Pouteria caimito. PMID:33365745
The complete chloroplast genome sequence of Dactylorhiza majalis (Rchb.) P.F. Hunt et Summerh. (Orchidaceae). PMID:33365744
The complete chloroplast genome of Streblus indicus. PMID:33365741
The complete chloroplast genome sequence of Helixanthera parasitica (Loranthaceae). PMID:33365736
The complete chloroplast genome of a medicinal resource plant (Rumex crispus). PMID:33365734
The complete chloroplast genome of an annual halophyte herb, Suaeda glauca (Amaranthaceae). PMID:33365725
The complete chloroplast genome of Aralia atropurpurea (Araliaceae, the ginseng family) from the Sino-Himalayan region, China. PMID:33365722
The complete chloroplast genome of Craigia yunnanensis, an endangered plant species with extremely small populations (PSESP) from South China. PMID:33365708
The complete chloroplast genome of Rungia pectinata (Acanthaceae). PMID:33365706
Complete mitochondrial genome of Hemiptelea davidii (Ulmaceae) and phylogenetic analysis. PMID:33365699
The complete chloroplast genome sequence of Goodyera schlechtendaliana in Korea (Orchidaceae). PMID:33365686
The complete chloroplast genome sequence of Platanthera chlorantha (Orchidaceae). PMID:33365682
The complete chloroplast genome of new alien species, Celosia trigyna L. (Amaranthaceae), in China. PMID:33365673
The complete chloroplast genome of Horsfieldia hainanensis, an Endangered species with extremely small populations. PMID:33365668
The complete chloroplast genome of Aster hypoleucus (Asteraceae: Astereae): an endemic species from China. PMID:33365665
Characterization of the complete chloroplast genome of Asparagus setaceus. PMID:33365661
The complete chloroplast genome of Myricaria prostrata, a threatened plant in the Qinghai-Tibetan Plateau. PMID:33365660
The complete chloroplast genome sequence of Polypodiodes amoena (Polypodiaceae), an important medical fern. PMID:33365658
The chloroplast genome sequence of Commelina communis (Commelinaceae). PMID:33365657
The complete chloroplast genome of Primula tsiangii W. W. Smith (Primulaceae): a karst endemic primrose in Southwest China. PMID:33365655
The complete chloroplast genome sequence of a vulnerable legume species Dalbergia tonkinensis prain in Vietnam. PMID:33365645
The complete chloroplast genome of Pinus yunnanensis Franchet (Pinaceae). PMID:33365643
The complete nucleotide sequence of chloroplast genome of Gentiana apiata (Gentianaceae), an endemic medicinal herb in China. PMID:33365641
Analysis of the complete organellar genomes of the economically valuable kelp Lessonia spicata (Lessoniaceae, Phaeophyceae) from Chile. PMID:33365635
Characterization of the complete chloroplast genome of Pterygocalyx volubilis (Gentianaceae). PMID:33365634
The complete mitochondrial genome of Cryptotermes declivis Tsai et Chen (Isoptera: Kalotermitidae). PMID:33365628
The complete mitochondrial genome of marmoset rats Hapalomys delacouri (Rodentia: Muridae). PMID:33365611
The complete chloroplast genome of tulip tree, Liriodendron tulifipera L. (Magnoliaceae): investigation of intra-species chloroplast variations. PMID:33365610
The complete chloroplast and mitochondrial genomes of Hyunsasi tree, Populus alba x Populus glandulosa (Salicaceae). PMID:33365609
The complete chloroplast genome sequence of Helicia shweliensis. PMID:33365608
The complete chloroplast genome sequence of Zanthoxylum armatum. PMID:33365605
The complete plastid genome sequence of Neopicrorhiza scrophulariiflora (Plantaginaceae): an endangered species endemic to The Himalayas regions. PMID:33365601
The complete chloroplast genome sequence of Quercus gilva（Fagaceae）. PMID:33365597
The complete chloroplast genome of sweet tea (Lithocarpus polystachyus). PMID:33365595
Characterization of the complete plastome of Atriplex centralasiatica (Chenopodiaceae), an annual halophytic herb. PMID:33365589
The complete chloroplast genome of coffee tree, Coffea arabica L. 'Blue Mountain' (Rubiaceae). PMID:33365575
The complete chloroplast genome of candidate new species from Rosa rugosa in Korea (Rosaceae). PMID:33365574
Characterization of the complete chloroplast genome of Amomum longiligulare (Zingiberaceae). PMID:33365573
The complete chloroplast genome of Korean Pyrus ussuriensis Maxim. (Rosaceae): providing genetic background of two types of P. ussuriensis. PMID:33365570
Complete mitochondrial genome sequence of a xerophilic fungus, Aspergillus pseudoglaucus. PMID:33365569
The complete chloroplast genome of Potentilla Freyniana Bornm. (Rosaceae). PMID:33365568
Complete chloroplast genome sequence of Betula alnoides (Betulaceae). PMID:33365566
The complete chloroplast genome sequence of Vitellaria paradoxa. PMID:33365563
Complete chloroplast genome of Prunus canescens: an endemic shrub in China. PMID:33365554
The complete chloroplast genome of Zabelia dielsii (Graebn.) Rehd. (Caprifoliaceae), an important horticultural plant in China. PMID:33365553
The complete chloroplast genome sequence of Belosynapsis ciliata (Blume) R. S. Rao (Commelinaceae). PMID:33365550
The complete chloroplast genome of Korean endemic species, Cirsium rhinoceros (H.Lév. & vaniot) Nakai (Asteraceae). PMID:33365539
The complete mitochondrial genome of Neocaridina heteropoda koreana Kubo, 1938 (Decapoda: Atyidae). PMID:33365530
The complete chloroplast genome of Vaccinium fragile (Vacciniaceae), a shrub endemic to China. PMID:33365519
The complete chloroplast genome sequence of an Alpine flowering plant Kuepferia otophora (Gentianaceae). PMID:33365518
The complete chloroplast genome of an Antarctic moss Syntrichia filaris (Müll.Hal.) R.H. Zander. PMID:33365516
Complete chloroplast genome of a Chinese endemic species Corydalis trisecta Franch. (Papaveraceae). PMID:33365510
The complete chloroplast genome sequence of Pinus kesiya var. langbianensis. PMID:33365509
Analysis of Poncirus polyandra (Rutaceae) chloroplast genome and its phylogenetic implications. PMID:33365508
Characteristic and phylogenetic analyses of chloroplast genome for an endangered species Manglietia lucida (Magnoliaceae). PMID:33365507
The complete chloroplast genome of Prince Ginseng, Pseudostellaria heterophylla (Miq.) Pax (Caryophyllaceae). PMID:33365497
The complete mitochondrial genome of West Indian drywood termite, Cryptotermes brevis (Walker) (Isoptera: Kalotermitidae). PMID:33365495
The complete mitochondrial genome of Exorista japonica (Townsend, 1909) (Diptera:Tachinidae). PMID:33365494
The complete mitochondrial genome of Laodelphax striatellus (Fallén, 1826) (Hemiptera: Delphacidae) collected in a southern part of Korean peninsula. PMID:33365493
The complete chloroplast genome of coffee tree, Coffea arabica L. 'Typica' (Rubiaceae). PMID:33365492
Complete chloroplast genome of Cymbidium ensifolium（Orchidaceae）. PMID:33365490
The complete mitochondrial genome of Laodelphax striatellus (Fallén, 1826) (Hemiptera: Delphacidae) collected in a mid-Western part of Korean peninsula. PMID:33365487
The complete chloroplast genome of a Chinese endemic ornamental plant Sorbus unguiculata Koehne (Rosaceae). PMID:33365486
The complete chloroplast genome of Fissidens nobilis Griff. (Fissidentaceae, Bryophyta). PMID:33365485
The complete chloroplast genome of Vaccinium duclouxii, an endemic species in China. PMID:33365480
Complete chloroplast genome sequence of Prunus mahaleb. PMID:33365475
Characterization of the complete chloroplast genome of Actinidia Melanandra (Actinidiaceae). PMID:33365471
The complete chloroplast genome of Primula obconica (Primulaceae). PMID:33365468
The complete chloroplast genome of Gentaina urnula (Gentianaceae). PMID:33365448
The complete chloroplast genome of Juniperus squamata (Cupressaceae), a shrubby conifer from Asian Mountains. PMID:33365443
Characterization of the complete chloroplast genome of Suaeda salsa (Amaranthaceae/Chenopodiaceae), an annual succulent halophyte. PMID:33365441
The complete chloroplast genome sequence of Manilkara zapota (Linn.) van Royen. PMID:33365438
The complete chloroplast genome sequence of plumed cockscomb (Celosia argentea, Amaranthaceae). PMID:33365436
The complete chloroplast genome sequence of rose-gold pussy willow, Salix gracilistyla Miq. (Salicaceae). PMID:33365434
The complete chloroplast genome sequence of Actinidia eriantha. PMID:33365432
Next-generation sequencing yields the complete chloroplast genome of Abies kawakamii. PMID:33365407
The complete chloroplast genome of the lipstick tree, Bixa Orellana (Bixaceae). PMID:33365401
The complete chloroplast genome of Azara serrata (Salicaceae) from Chile. PMID:33365399
Complete chloroplast genome of Ulleung Island endemic pokeweed, Phytolacca insularis (Phytolaccaceae), in Korea. PMID:33365397
A new mitochondrial gene order in the banded cusk-eel Raneya brasiliensis (Actinopterygii, Ophidiiformes). PMID:33365395
Phylogeny and Biogeography of Spinicaudata (Crustacea: Branchiopoda). PMID:33365101
Species Delimitation of the Eisenia nordenskioldi Complex (Oligochaeta, Lumbricidae) Using Transcriptomic Data. PMID:33365049
Characterization of DNA methylation in Malawian Mycobacterium tuberculosis clinical isolates. PMID:33362962
Hybrid Incompatibilities and Transgressive Gene Expression Between Two Closely Related Subspecies of Drosophila. PMID:33362859
Initial Complete Chloroplast Genomes of Alchemilla (Rosaceae): Comparative Analysis and Phylogenetic Relationships. PMID:33362846
Species Diversity With Comprehensive Annotations of Wood-Inhabiting Poroid and Corticioid Fungi in Uzbekistan. PMID:33362746
Functional metagenomics of the thioredoxin superfamily. PMID:33361108
SARS-Cov-2 ORF3a: Mutability and function. PMID:33359807
Folding Stability of Pax9 Intronic G-Quadruplex Correlates with Relative Molar Size in Eutherians. PMID:33355664
Monadelpha (Euphorbiaceae, Plukenetieae), a new genus of Tragiinae from the Amazon rainforest of Venezuela and Brazil. PMID:33354142
Pogostemon guamensis Lorence & W.L.Wagner (Lamiaceae), a new species from Guam, Mariana Islands. PMID:33354139
Phylogenetic supertree reveals detailed evolution of SARS-CoV-2. PMID:33353955
Molecular Phylogeny and Phylogeography of Potentilla multifida L. agg. (Rosaceae) in Northern Eurasia with Special Focus on Two Rare and Critically Endangered Endemic Species, P. volgarica and P. eversmanniana. PMID:33352996
Coronavirus genomes carry the signatures of their habitats. PMID:33351847
Phylogenomics of white-eyes, a 'great speciator', reveals Indonesian archipelago as the center of lineage diversity. PMID:33350381
CheckV assesses the quality and completeness of metagenome-assembled viral genomes. PMID:33349699
Telomeric TART elements target the piRNA machinery in Drosophila. PMID:33347429
Confronting Sources of Systematic Error to Resolve Historically Contentious Relationships: A Case Study Using Gadiform Fishes (Teleostei, Paracanthopterygii, Gadiformes). PMID:33346841
FireProtASR: A Web Server for Fully Automated Ancestral Sequence Reconstruction. PMID:33346815
CRISPR Arrays Away from cas Genes. PMID:33346707
Recognition of plausible therapeutic agents to combat COVID-19: An omics data based combined approach. PMID:33346100
Genomic epidemiology of coxsackievirus A16 in mainland of China, 2000-18. PMID:33343924
Efficient inference, potential, and limitations of site-specific substitution models. PMID:33343922
Dissection for Floral Micromorphology and Plastid Genome of Valuable Medicinal Borages Arnebia and Lithospermum (Boraginaceae). PMID:33343605
A Novel Family of Acinetobacter Mega-Plasmids Are Disseminating Multi-Drug Resistance Across the Globe While Acquiring Location-Specific Accessory Genes. PMID:33343549
A Biological Inventory of Prophages in A. baumannii Genomes Reveal Distinct Distributions in Classes, Length, and Genomic Positions. PMID:33343523
Pervasive prophage recombination occurs during evolution of spore-forming Bacilli. PMID:33343000
Furin cleavage sites naturally occur in coronaviruses. PMID:33340798
Out of India, thrice: diversification of Asian forest scorpions reveals three colonizations of Southeast Asia. PMID:33339838
Microbial community composition in the rhizosphere of Larix decidua under different light regimes with additional focus on methane cycling microorganisms. PMID:33339837
Mutation Spectra of the MRN (MRE11, RAD50, NBS1/NBN) Break Sensor in Cancer Cells. PMID:33339169
RBM-MHC: A Semi-Supervised Machine-Learning Method for Sample-Specific Prediction of Antigen Presentation by HLA-I Alleles. PMID:33338400
A unique chromatin profile defines adaptive genomic regions in a fungal plant pathogen. PMID:33337321
Emerging phylogenetic structure of the SARS-CoV-2 pandemic. PMID:33335743
On the transformation of MinHash-based uncorrected distances into proper evolutionary distances for phylogenetic inference. PMID:33335719
The global epidemiology of emerging Histoplasma species in recent years. PMID:33335607
Secondary metabolites of Bacillus subtilis impact the assembly of soil-derived semisynthetic bacterial communities. PMID:33335606
Metabolic Contributions of an Alphaproteobacterial Endosymbiont in the Apicomplexan Cardiosporidium cionae. PMID:33335517
Inter-protein residue covariation information unravels physically interacting protein dimers. PMID:33334319
Establishment of a Challenge Model for Sheeppox Virus Infection. PMID:33333872
Linked by Ancestral Bonds: Multiple Whole-Genome Duplications and Reticulate Evolution in a Brassicaceae Tribe. PMID:33331908
Natural SARS-CoV-2 infections, including virus isolation, among serially tested cats and dogs in households with confirmed human COVID-19 cases in Texas, USA. PMID:33330861
Novel species of Pestalotiopsis fungi on Dracaena from Thailand. PMID:33329926
A Chromosome-Level Genome Assembly of the Anglerfish Lophius litulon. PMID:33329719
Cascabel: A Scalable and Versatile Amplicon Sequence Data Analysis Pipeline Delivering Reproducible and Documented Results. PMID:33329686
Highly Reduced Plastid Genomes of the Non-photosynthetic Dictyochophyceans Pteridomonas spp. (Ochrophyta, SAR) Are Retained for tRNA-Glu-Based Organellar Heme Biosynthesis. PMID:33329672
Genomic Characterization of the Japanese Indigenous Wine Grape Vitis sp. cv. Koshu. PMID:33329619
Morphology, Multilocus Phylogeny, and Toxin Analysis Reveal Amanita albolimbata, the First Lethal Amanita Species From Benin, West Africa. PMID:33329489
Analysis of Indian SARS-CoV-2 Genomes Reveals Prevalence of D614G Mutation in Spike Protein Predicting an Increase in Interaction With TMPRSS2 and Virus Infectivity. PMID:33329480
Exploring the Microbiota of East African Indigenous Leafy Greens for Plant Growth, Health, and Resilience. PMID:33329455
The Mosaic Architecture of NRPS-PKS in the Arbuscular Mycorrhizal Fungus Gigaspora margarita Shows a Domain With Bacterial Signature. PMID:33329443
High Representation of Archaea Across All Depths in Oxic and Low-pH Sediment Layers Underlying an Acidic Stream. PMID:33329440
A chromosome-scale reference genome of Lobularia maritima, an ornamental plant with high stress tolerance. PMID:33328471
Genetic dissection of climacteric fruit ripening in a melon population segregating for ripening behavior. PMID:33328460
Genomic and physiological mechanisms underlying skin plasticity during water to air transition in an amphibious fish. PMID:33328287
High-Resolution Typing of Staphylococcus epidermidis Based on Core Genome Multilocus Sequence Typing To Investigate the Hospital Spread of Multidrug-Resistant Clones. PMID:33328176
Characterization and Diversity of 243 Complete Human Papillomavirus Genomes in Cervical Swabs Using Next Generation Sequencing. PMID:33327447
Alterations in Gut Microbiota Do Not Play a Causal Role in Diet-independent Weight Gain Caused by Ovariectomy. PMID:33324864
The evolutionary history and global spatio-temporal dynamics of potato virus Y. PMID:33324488
The Response of Estuarine Ammonia-Oxidizing Communities to Constant and Fluctuating Salinity Regimes. PMID:33324363
Genomes of the "Candidatus Actinomarinales" Order: Highly Streamlined Marine Epipelagic Actinobacteria. PMID:33323418
Austrian Raw-Milk Hard-Cheese Ripening Involves Successional Dynamics of Non-Inoculated Bacteria and Fungi. PMID:33322552
Immunoproteomic Analysis Reveals Novel Candidate Antigens for the Diagnosis of Paracoccidioidomycosis Due to Paracoccidioides lutzii. PMID:33322269
Phylogenomic Analysis of Global Isolates of Canid Alphaherpesvirus 1. PMID:33322040
Expression of Piwi Genes during the Regeneration of Lineus sanguineus (Nemertea, Pilidiophora, Heteronemertea). PMID:33321919
The sulfur formation system mediating extracellular cysteine-cystine recycling in Fervidobacterium islandicum AW-1 is associated with keratin degradation. PMID:33320434
Structural basis for effector transmembrane domain recognition by type VI secretion system chaperones. PMID:33320089
Extensive genetic diversity and host range of rodent-borne coronaviruses. PMID:33318860
Using target enrichment sequencing to study the higher-level phylogeny of the largest lichen-forming fungi family: Parmeliaceae (Ascomycota). PMID:33317627
Molecular Identification and Phylogenetic Placement of Rosa arabica Crép. (Rosaceae), a Critically Endangered Plant Species. PMID:33317197
Multiple Introductions Followed by Ongoing Community Spread of SARS-CoV-2 at One of the Largest Metropolitan Areas of Northeast Brazil. PMID:33316947
Phylogenetic Analysis of SARS-CoV-2 Data Is Difficult. PMID:33316067
A dynamic, ring-forming MucB / RseB-like protein influences spore shape in Bacillus subtilis. PMID:33315869
Combining traditional and molecular epidemiology methods to quantify local HIV transmission among foreign-born residents. PMID:33315589
Food Resource Sharing of Alder Leaf Beetle Specialists (Coleoptera: Chrysomelidae) as Potential Insect-Plant Interface for Horizontal Transmission of Endosymbionts. PMID:33315074
Chromosome-level genome assembly of the aphid parasitoid Aphidius gifuensis using Oxford Nanopore sequencing and Hi-C technology. PMID:33314728
Repeated Evolution of Inactive Pseudonucleases in a Fungal Branch of the Dis3/RNase II Family of Nucleases. PMID:33313834
First Record of the Complete Mitochondrial Genome of a Saprotrophic and Opportunistic Human Pathogenic Fungus, Scopulariopsis brevicaulis. PMID:33312021
Taxonomic Study of the Genus Pholiota (Strophariaceae, Basidiomycota) in Korea. PMID:33312014
The Genus Acervus from Southwestern China and Northern Thailand. PMID:33312013
Penicillium from Rhizosphere Soil in Terrestrial and Coastal Environments in South Korea. PMID:33312010
Structural and functional comparison of SARS-CoV-2-spike receptor binding domain produced in Pichia pastoris and mammalian cells. PMID:33311634
Genomic epidemiology reveals transmission patterns and dynamics of SARS-CoV-2 in Aotearoa New Zealand. PMID:33311501
Plastome comparison and evolution within the tribes of Plantaginaceae: Insights from an Asian gypsyweed. PMID:33304160
A global meta-analysis of ITS rDNA sequences from material belonging to the genus Ganoderma (Basidiomycota, Polyporales) including new data from selected taxa. PMID:33304123
Hydrostachys flabellifera (Hydrostachyaceae), a new species from Madagascar. PMID:33304118
Chaotic genetic structure and past demographic expansion of the invasive gastropod Tritia neritea in its native range, the Mediterranean Sea. PMID:33303767
Phylogenetic analysis of SARS-CoV-2 in Boston highlights the impact of superspreading events. PMID:33303686
Intruder (DD38E), a recently evolved sibling family of DD34E/Tc1 transposons in animals. PMID:33303022
Dissecting protein domain variability in the core RNA interference machinery of five insect orders. PMID:33302789
Unique Mitochondrial Single Nucleotide Polymorphisms Demonstrate Resolution Potential to Discriminate Theileria parva Vaccine and Buffalo-Derived Strains. PMID:33302571
Chromosome-level draft genome of a diploid plum (Prunus salicina). PMID:33300949
Amilorides inhibit SARS-CoV-2 replication in vitro by targeting RNA structures. PMID:33299997
Prospective mapping of viral mutations that escape antibodies used to treat COVID-19. PMID:33299993
Characterization of an IncR Plasmid with Two Copies of ISCR-Linked qnrB6 from ST968 Klebsiella pneumoniae. PMID:33299848
Gene expression data support the hypothesis that Isoetes rootlets are true roots and not modified leaves. PMID:33299010
Patient-derived SARS-CoV-2 mutations impact viral replication dynamics and infectivity in vitro and with clinical implications in vivo. PMID:33298872
Mitochondrial DNAs provide insight into trypanosome phylogeny and molecular evolution. PMID:33297939
The Complete Mitochondrial Genome of Four Hylicinae (Hemiptera: Cicadellidae): Structural Features and Phylogenetic Implications. PMID:33297415
Infection Patterns and Fitness Effects of Rickettsia and Sodalis Symbionts in the Green Lacewing Chrysoperla carnea. PMID:33297293
The applicability of forensic time since death estimation methods for buried bodies in advanced decomposition stages. PMID:33296399
The Venus flytrap trigger hair-specific potassium channel KDM1 can reestablish the K+ gradient required for hapto-electric signaling. PMID:33296375
Adaptive Immunity and Pathogenesis of Diabetes: Insights Provided by the α4-Integrin Deficient NOD Mouse. PMID:33291571
Whole Genome Characterization and Evolutionary Analysis of G1P[8] Rotavirus A Strains during the Pre- and Post-Vaccine Periods in Mozambique (2012-2017). PMID:33291333
Multiple SARS-CoV-2 Introductions Shaped the Early Outbreak in Central Eastern Europe: Comparing Hungarian Data to a Worldwide Sequence Data-Matrix. PMID:33291299
The International Virus Bioinformatics Meeting 2020. PMID:33291220
Degree of Functional Divergence in Duplicates Is Associated with Distinct Roles in Plant Evolution. PMID:33290522
'Candidatus Phytoplasma stylosanthis', a novel taxon with a diverse host range in Australia, characterised using multilocus sequence analysis of 16S rRNA, secA, tuf, and rp genes. PMID:33289625
Antigenic variation of SARS-CoV-2 in response to immune pressure. PMID:33289207
Histone variants in archaea and the evolution of combinatorial chromatin complexity. PMID:33288720
Geochemical transition zone powering microbial growth in subsurface sediments. PMID:33288718
New view on the organization and evolution of Palaeognathae mitogenomes poses the question on the ancestral gene rearrangement in Aves. PMID:33287726
Molecular epidemiology of SARS-CoV-2 clusters caused by asymptomatic cases in Anhui Province, China. PMID:33287717
Plant Health and Rhizosphere Microbiome: Effects of the Bionematicide Aphanocladium album in Tomato Plants Infested by Meloidogyne javanica. PMID:33287243
Sodium-bile acid co-transporter is crucial for survival of a carcinogenic liver fluke Clonorchis sinensis in the bile. PMID:33284789
Dynamics in Secondary Metabolite Gene Clusters in Otherwise Highly Syntenic and Stable Genomes in the Fungal Genus Botrytis. PMID:33283866
Symbiotic and Nonsymbiotic Members of the Genus Ensifer (syn. Sinorhizobium) Are Separated into Two Clades Based on Comparative Genomics and High-Throughput Phenotyping. PMID:33283865
Evolution and rapid spread of a reassortant A(H3N2) virus that predominated the 2017-2018 influenza season. PMID:33282337
Genome Size Variation and Comparative Genomics Reveal Intraspecific Diversity in Brassica rapa. PMID:33281844
Wenzhouxiangella Strain AB-CW3, a Proteolytic Bacterium From Hypersaline Soda Lakes That Preys on Cells of Gram-Positive Bacteria. PMID:33281797
The Transition From Stochastic to Deterministic Bacterial Community Assembly During Permafrost Thaw Succession. PMID:33281795
Distribution and Evolution of the Bacteriophage WO and Its Antagonism With Wolbachia. PMID:33281793
Phylogenomic Analysis of Campylobacter fetus Reveals a Clonal Structure of Insertion Element ISCfe1 Positive Genomes. PMID:33281781
Individualistic evolutionary responses of Central African rain forest plants to Pleistocene climatic fluctuations. PMID:33277432
Efficient COI barcoding using high throughput single-end 400 bp sequencing. PMID:33276723
The Complete Chloroplast Genome of the Vulnerable Oreocharis esquirolii (Gesneriaceae): Structural Features, Comparative and Phylogenetic Analysis. PMID:33276435
Living in the dark: Bat caves as hotspots of fungal diversity. PMID:33275627
Mutational Pressure Drives Differential Genome Conservation in Two Bacterial Endosymbionts of Sap-Feeding Insects. PMID:33275136
Systematic prediction of genes functionally associated with bacterial retrons and classification of the encoded tripartite systems. PMID:33275130
A putative origin of the insect chemosensory receptor superfamily in the last common eukaryotic ancestor. PMID:33274716
Re-assembly of nineteenth-century smallpox vaccine genomes reveals the contemporaneous use of horsepox and horsepox-related viruses in the USA. PMID:33272280
Population Genetics of Odontarrhena (Brassicaceae) from Albania: The Effects of Anthropic Habitat Disturbance, Soil, and Altitude on a Ni-Hyperaccumulator Plant Group from a Major Serpentine Hotspot. PMID:33271845
Developmental remodelling of non-CG methylation at satellite DNA repeats. PMID:33271598
Primate phylogenomics uncovers multiple rapid radiations and ancient interspecific introgression. PMID:33270638
Integrative taxonomy and analysis of species richness patterns of nocturnal Darwin wasps of the genus Enicospilus Stephens (Hymenoptera, Ichneumonidae, Ophioninae) in Japan. PMID:33269011
Comparison of ZMAC and MARC-145 Cell Lines for Improving Porcine Reproductive and Respiratory Syndrome Virus Isolation from Clinical Samples. PMID:33268540
Pattern blending enriches the diversity of animal colorations. PMID:33268371
Vickermania gen. nov., trypanosomatids that use two joined flagella to resist midgut peristaltic flow within the fly host. PMID:33267865
Does respiratory co-infection facilitate dispersal of SARS-CoV-2? investigation of a super-spreading event in an open-space office. PMID:33267855
Moose genomes reveal past glacial demography and the origin of modern lineages. PMID:33267779
Characteristics of the completed chloroplast genome sequence of Xanthium spinosum: comparative analyses, identification of mutational hotspots and phylogenetic implications. PMID:33267775
ClipKIT: A multiple sequence alignment trimming software for accurate phylogenomic inference. PMID:33264284
Lacydoniidae (Annelida) Off the Coast of North-eastern Japan: A Description of Lacydonia japonica sp. nov. PMID:33262851
Molecular phylogeny inferred from the mitochondrial genomes of Plecoptera with Oyamia nigribasis (Plecoptera: Perlidae). PMID:33262442
Deep learning suggests that gene expression is encoded in all parts of a co-evolving interacting gene regulatory structure. PMID:33262328
Genomic Characterization of a Novel Tenericutes Bacterium from Deep-Sea Holothurian Intestine. PMID:33260795
Comparative Analysis of Complete Chloroplast Genome Sequences of Wild and Cultivated Bougainvillea (Nyctaginaceae). PMID:33260641
Complete Mapping of Mutations to the SARS-CoV-2 Spike Receptor-Binding Domain that Escape Antibody Recognition. PMID:33259788
Archaeological mitogenomes illuminate the historical ecology of sea otters (Enhydra lutris) and the viability of reintroduction. PMID:33259759
Beta- and Novel Delta-Coronaviruses Are Identified from Wild Animals in the Qinghai-Tibetan Plateau, China. PMID:33259031
Phylogenetic comparison of egg transparency in ascidians by hyperspectral imaging. PMID:33257720
Fruiting body form, not nutritional mode, is the major driver of diversification in mushroom-forming fungi. PMID:33257574
Prediction of the incubation period for COVID-19 and future virus disease outbreaks. PMID:33256718
Comparative Genomics and Functional Studies of Wheat BED-NLR Loci. PMID:33256067
Yil102c-A is a Functional Homologue of the DPMII Subunit of Dolichyl Phosphate Mannose Synthase in Saccharomyces cerevisiae. PMID:33255655
Molecular Epidemiology and Genotyping of Infectious Bronchitis Virus and Avian Metapneumovirus in Backyard and Commercial Chickens in Jimma Zone, Southwestern Ethiopia. PMID:33255570
Unlocking Survival Mechanisms for Metal and Oxidative Stress in the Extremely Acidophilic, Halotolerant Acidihalobacter Genus. PMID:33255299
Bracon brevicornis Genome Showcases the Potential of Linked-Read Sequencing in Identifying a Putative Complementary Sex Determiner Gene. PMID:33255162
Genomic analysis reveals an exogenous viral symbiont with dual functionality in parasitoid wasps and their hosts. PMID:33253317
SARS-CoV-2 lineage B.6 was the major contributor to early pandemic transmission in Malaysia. PMID:33253226
SARS-CoV-2 Among Military and Civilian Patients, Metro Manila, Philippines. PMID:33252670
Plastome phylogenomics of Cephalotaxus (Cephalotaxaceae) and allied genera. PMID:33252661
Phylogenomics of the Andean Tetraploid Clade of the American Amaryllidaceae (Subfamily Amaryllidoideae): Unlocking a Polyploid Generic Radiation Abetted by Continental Geodynamics. PMID:33250911
Selective Bacterial Colonization of the Murine Larynx in a Gnotobiotic Model. PMID:33250883
Analysis of Drosophila Atg8 proteins reveals multiple lipidation-independent roles. PMID:33249988
A Sister Lineage of Sampled Retroviruses Corroborates the Complex Evolution of Retroviruses. PMID:33249491
Coevolutionary forces shaping the fitness of SARS-CoV-2 spike glycoprotein against human receptor ACE2. PMID:33249264
Case Study: Prolonged Infectious SARS-CoV-2 Shedding from an Asymptomatic Immunocompromised Individual with Cancer. PMID:33248470
The complete chloroplast genome sequences of five pinnate-leaved Primula species and phylogenetic analyses. PMID:33247172
Wild black bears harbor simple gut microbial communities with little difference between the jejunum and colon. PMID:33247155
Genomic signatures in the coral holobiont reveal host adaptations driven by Holocene climate change and reef specific symbionts. PMID:33246955
Cloning of the first cDNA encoding a putative CCRFamide precursor: identification of the brain, eyestalk ganglia, and cardiac ganglion as sites of CCRFamide expression in the American lobster, Homarus americanus. PMID:33244646
Genome skimming and exploration of DNA barcodes for Taiwan endemic cypresses. PMID:33244113
CAPRIB: a user-friendly tool to study amino acid changes and selection for the exploration of intra-genus evolution. PMID:33243176
Complete mitogenome data from a European specimen of Ostrinia scapulalis (Walker, 1859) (Lepidoptera, Pyraloidea, Crambidae, Pyraustinae). PMID:33241091
The land flatworm Amaga expatria (Geoplanidae) in Guadeloupe and Martinique: new reports and molecular characterization including complete mitogenome. PMID:33240595
Novel hepaci- and pegi-like viruses in native Australian wildlife and non-human primates. PMID:33240526
Phylogeny, Diversification Rate, and Divergence Time of Agave sensu lato (Asparagaceae), a Group of Recent Origin in the Process of Diversification. PMID:33240289
No evidence for increased transmissibility from recurrent mutations in SARS-CoV-2. PMID:33239633
Conserved Genomic Terminals of SARS-CoV-2 as Coevolving Functional Elements and Potential Therapeutic Targets. PMID:33239366
Antibody Isotype Switching as a Mechanism to Counter HIV Neutralization Escape. PMID:33238131
Cerumen microbial community shifts between healthy and otitis affected dogs. PMID:33237912
CATH: increased structural coverage of functional space. PMID:33237325
GreenPhylDB v5: a comparative pangenomic database for plant genomes. PMID:33237299
Method comparison of targeted influenza A virus typing and whole-genome sequencing from respiratory specimens of companion animals. PMID:33234046
Anaplasma and Theileria Pathogens in Cattle of Lambwe Valley, Kenya: A Case for Pro-Active Surveillance in the Wildlife-Livestock Interface. PMID:33233713
Endolysins from Antarctic Pseudomonas Display Lysozyme Activity at Low Temperature. PMID:33233712
Badnaviruses and banana genomes: a long association sheds light on Musa phylogeny and origin. PMID:33231927
The Order of Trait Emergence in the Evolution of Cyanobacterial Multicellularity. PMID:33231627
Zschokkella epinepheli n. sp. (Myxosporea: Myxidiidae) infecting the gallbladder of the white grouper Epinephelus aeneus (Serranidae) from Tunisian waters. PMID:33230611
Mycena genomes resolve the evolution of fungal bioluminescence. PMID:33229585
Genetic characterization of a Marek's disease virus strain isolated in Japan. PMID:33228722
Serpentovirus (Nidovirus) and Orthoreovirus Coinfection in Captive Veiled Chameleons (Chamaeleo calyptratus) with Respiratory Disease. PMID:33228135
Systemic paralogy and function of retinal determination network homologs in arachnids. PMID:33225889
Effect of pH on the Ability of N-Terminal Domain of Human NPC1 to Recognize, Bind, and Transfer Cholesterol. PMID:33225153
Plastid Phylogenomics of Dendroseris (Cichorieae; Asteraceae): Insights Into Structural Organization and Molecular Evolution of an Endemic Lineage From the Juan Fernández Islands. PMID:33224173
Evolutionary Convergence of C4 Photosynthesis: A Case Study in the Nyctaginaceae. PMID:33224166
Taxonomic revision of Russula subsection Amoeninae from South Korea. PMID:33223919
Morphology and phylogenetic analysis of five deep-sea golden gorgonians (Cnidaria, Octocorallia, Chrysogorgiidae) in the Western Pacific Ocean, with the description of a new species. PMID:33223893
New record of Nausithoe werneri (Scyphozoa, Coronatae, Nausithoidae) from the Brazilian coast and a new synonymy for Nausithoe maculata. PMID:33223866
Morphology, ultrastructure, genomics, and phylogeny of Euplotes vanleeuwenhoeki sp. nov. and its ultra-reduced endosymbiont "Candidatus Pinguicoccus supinus" sp. nov. PMID:33219271
Insights into Comparative Genomics, Codon Usage Bias, and Phylogenetic Relationship of Species from Biebersteiniaceae and Nitrariaceae Based on Complete Chloroplast Genomes. PMID:33218207
EukRef-excavates: seven curated SSU ribosomal RNA gene databases. PMID:33216898
Comparative Genomics of Strictly Vertically Transmitted, Feminizing Microsporidia Endosymbionts of Amphipod Crustaceans. PMID:33216144
A Chemical Probe for Dark Kinase STK17B Derives Its Potency and High Selectivity through a Unique P-Loop Conformation. PMID:33215924
Isolation and structure determination of new linear azole-containing peptides spongiicolazolicins A and B from Streptomyces sp. CWH03. PMID:33215256
Draft Genome Sequence of Naganishia liquefaciens Strain N6, Isolated from the Japan Trench. PMID:33214294
Genomic Analysis Enlightens Agaricales Lifestyle Evolution and Increasing Peroxidase Diversity. PMID:33211093
Why are ACE2 binding coronavirus strains SARS-CoV/SARS-CoV-2 wild and NL63 mild? PMID:33210300
Phytohormones and volatile organic compounds, like geosmin, in the ectomycorrhiza of Tricholoma vaccinum and Norway spruce (Picea abies). PMID:33210234
Detection of haemosporidian parasites in wild and domestic birds in northern and central provinces of Iran: Introduction of new lineages and hosts. PMID:33209581
Caught in the Act: Variation in plastid genome inverted repeat expansion within and between populations of Medicago minima. PMID:33209275
Mimicry and mitonuclear discordance in nudibranchs: New insights from exon capture phylogenomics. PMID:33209263
Genome-enabled discovery of anthraquinone biosynthesis in Senna tora. PMID:33208749
The genomic timeline of cichlid fish diversification across continents. PMID:33208747
Meta-Transcriptomic Analysis Reveals the Virome and Viral Genomic Evolution of Medically Important Mites. PMID:33208452
Recombination and Positive Selection Differentially Shaped the Diversity of Betacoronavirus Subgenera. PMID:33207802
Metabolic Responses to Butyrate Supplementation in LF- and HF-Fed Mice Are Cohort-Dependent and Associated with Changes in Composition and Function of the Gut Microbiota. PMID:33207675
Comprehensive genome analyses of Sellimonas intestinalis, a potential biomarker of homeostasis gut recovery. PMID:33206037
Evolution of Oxidative Phosphorylation (OXPHOS) Genes Reflecting the Evolutionary and Life Histories of Fig Wasps (Hymenoptera, Chalcidoidea). PMID:33203150
Genetic and Antigenic Evolution of European Swine Influenza A Viruses of HA-1C (Avian-Like) and HA-1B (Human-Like) Lineages in France from 2000 to 2018. PMID:33202972
Comparative Genomics Reveals Novel Target Genes towards Specific Control of Plant-Parasitic Nematodes. PMID:33202889
Conservative route to genome compaction in a miniature annelid. PMID:33199869
Analysis of Whole-Genome Sequences of Infectious laryngotracheitis Virus Isolates from Poultry Flocks in Canada: Evidence of Recombination. PMID:33198373
Identification of Novel Astroviruses in the Gastrointestinal Tract of Domestic Cats. PMID:33198334
Plastome Characterization and Phylogenomics of East Asian Beeches with a Special Emphasis on Fagus multinervis on Ulleung Island, Korea. PMID:33198274
Soybean Viromes in the Republic of Korea Revealed by RT-PCR and Next-Generation Sequencing. PMID:33198273
Obesity-Related Metabolome and Gut Microbiota Profiles of Juvenile Göttingen Minipigs-Long-Term Intake of Fructose and Resistant Starch. PMID:33198236
dbCNS: A New Database for Conserved Noncoding Sequences. PMID:33196844
Comparative Genomics within and across Bilaterians Illuminates the Evolutionary History of ALK and LTK Proto-Oncogene Origination and Diversification. PMID:33196781
Easy phylotyping of Escherichia coli via the EzClermont web app and command-line tool. PMID:33195978
The complete chloroplast genome data of Areca catechu (Arecaceae). PMID:33195770
Survey of Zoonotic and Non-zoonotic Vector-Borne Pathogens in Military Horses in Lisbon, Portugal. PMID:33195629
New Parasite Records for the Sunfish Mola mola in the Mediterranean Sea and Their Potential Use as Biological Tags for Long-Distance Host Migration. PMID:33195589
Alterations in the Gut Microbiota of Zebrafish (Danio rerio) in Response to Water-Soluble Crude Oil Components and Its Mixture With a Chemical Dispersant. PMID:33194990
Characterization of Chloroplast Genomes From Two Salvia Medicinal Plants and Gene Transfer Among Their Mitochondrial and Chloroplast Genomes. PMID:33193683
Comparative and Phylogenetic Analysis of the Complete Chloroplast Genomes of Three Paeonia Section Moutan Species (Paeoniaceae). PMID:33193580
Co-infection of Chicken Layers With Histomonas meleagridis and Avian Pathogenic Escherichia coli Is Associated With Dysbiosis, Cecal Colonization and Translocation of the Bacteria From the Gut Lumen. PMID:33193238
Genome Characterization of a Novel Wastewater Bacteroides fragilis Bacteriophage (vB_BfrS_23) and its Host GB124. PMID:33193224
Cosmopolitan Distribution of Endozoicomonas-Like Organisms and Other Intracellular Microcolonies of Bacteria Causing Infection in Marine Mollusks. PMID:33193196
Hydrocarbon-Degrading Bacteria Alcanivorax and Marinobacter Associated With Microalgae Pavlova lutheri and Nannochloropsis oculata. PMID:33193176
Comparative Genomic Analysis Reveals Genetic Mechanisms of the Variety of Pathogenicity, Antibiotic Resistance, and Environmental Adaptation of Providencia Genus. PMID:33193173
The Enigmatic Thelebolaceae (Thelebolales, Leotiomycetes): One New Genus Solomyces and Five New Species. PMID:33193172
Interpretations of Environmental Microbial Community Studies Are Biased by the Selected 16S rRNA (Gene) Amplicon Sequencing Pipeline. PMID:33193131
Transcriptome Analysis and Knockdown of the Juvenile Hormone Esterase Gene Reveal Abnormal Feeding Behavior in the Sugarcane Giant Borer. PMID:33192604
Zehneria grandibracteata (Cucurbitaceae), an overlooked new species from western Kenyan forests. PMID:33192148
Two new species of freshwater crabs of the genera Eosamon Yeo & Ng, 2007 and Indochinamon Yeo & Ng, 2007 (Crustacea, Brachyura, Potamidae) from southern Yunnan, China. PMID:33192135
Structures of diverse poxin cGAMP nucleases reveal a widespread role for cGAS-STING evasion in host-pathogen conflict. PMID:33191912
Chloroplast genomes elucidate diversity, phylogeny, and taxonomy of Pulsatilla (Ranunculaceae). PMID:33188288
Identification and dereplication of endophytic Colletotrichum strains by MALDI TOF mass spectrometry and molecular networking. PMID:33188275
Repeated gain and loss of a single gene modulates the evolution of vascular plant pathogen lifestyles. PMID:33188025
Plastomes of eight Ligusticum species: characterization, genome evolution, and phylogenetic relationships. PMID:33187470
A clade of SARS-CoV-2 viruses associated with lower viral loads in patient upper airways. PMID:33186810
Whole-Genome Transcriptome Analyses of Native Symbionts Reveal Host Coral Genomic Novelties for Establishing Coral-Algae Symbioses. PMID:33185681
Evolutionary History of Mitochondrial Genomes in Discoba, Including the Extreme Halophile Pleurostomum flabellatum (Heterolobosea). PMID:33185659
A quick and sensitive diagnostic tool for detection of Maize streak virus. PMID:33184360
A genome-wide screening for RNAi pathway proteins in Acari. PMID:33183236
Bovine Coronavirus: Variability, Evolution, and Dispersal Patterns of a No Longer Neglected Betacoronavirus. PMID:33182765
Complete Plastid Genome Sequencing of Eight Species from Hansenia, Haplosphaera and Sinodielsia (Apiaceae): Comparative Analyses and Phylogenetic Implications. PMID:33182384
The Unexplored Virome of Two Atlantic Coast Fish: Contribution of Next-Generation Sequencing to Fish Virology. PMID:33182306
Partitioned Gene-Tree Analyses and Gene-Based Topology Testing Help Resolve Incongruence in a Phylogenomic Study of Host-Specialist Bees (Apidae: Eucerinae). PMID:33179746
New Insights Into DAEC and EAEC Pathogenesis and Phylogeny. PMID:33178627
Rediscovery of Seven Long-Forgotten Species of Peronospora and Plasmopara (Oomycota). PMID:33177913
Dense sampling of bird diversity increases power of comparative genomics. PMID:33177665
Discovery and comparative genomic analysis of elk circovirus (ElkCV), a novel circovirus species and the first reported from a cervid host. PMID:33177604
Unexpected Discovery and Expression of Amphibian Class II Endogenous Retroviruses. PMID:33177199
Dictyocoela microsporidia diversity and co-diversification with their host, a gammarid species complex (Crustacea, Amphipoda) with an old history of divergence and high endemic diversity. PMID:33176694
Evidence of homologous recombination as a driver of diversity in Brachyspira pilosicoli. PMID:33174833
Genomic and phenotypic analysis of COVID-19-associated pulmonary aspergillosis isolates of Aspergillus fumigatus. PMID:33173866
Molecular evolution of GDP-L-galactose phosphorylase, a key regulatory gene in plant ascorbate biosynthesis. PMID:33173574
Mrakia panshiensis sp. nov. a new member of the Cystofilobasidiales from soil in China, and description of the teleomorphic-stage of M. arctica. PMID:33173405
Loss of the Conserved Alveolate Kinase MAPK2 Decouples Toxoplasma Cell Growth from Cell Division. PMID:33173004
New Light on Historical Specimens Reveals a New Species of Ladybird (Coleoptera: Coccinellidae): Morphological, Museomic, and Phylogenetic Analyses. PMID:33172182
A Novel Anphevirus in Aedes albopictus Mosquitoes Is Distributed Worldwide and Interacts with the Host RNA Interference Pathway. PMID:33172032
Exercise and/or Genistein Treatment Impact Gut Microbiota and Inflammation after 12 Weeks on a High-Fat, High-Sugar Diet in C57BL/6 Mice. PMID:33172007
Transcriptional and Morpho-Physiological Responses of Marchantia polymorpha upon Phosphate Starvation. PMID:33171770
Contrasted histories of organelle and nuclear genomes underlying physiological diversification in a grass species. PMID:33171085
Large scale genomic analysis of 3067 SARS-CoV-2 genomes reveals a clonal geo-distribution and a rich genetic variations of hotspots mutations. PMID:33170902
Calcium salts of long-chain fatty acids from linseed oil decrease methane production by altering the rumen microbiome in vitro. PMID:33170886
A genomic catalog of Earth's microbiomes. PMID:33169036
Common occurrence of Belerina virus, a novel paramyxovirus found in Belgian hedgehogs. PMID:33168902
Genome-wide mapping of SARS-CoV-2 RNA structures identifies therapeutically-relevant elements. PMID:33166999
Integrative genomic phylogeography reveals signs of mitonuclear incompatibility in a natural hybrid goby population. PMID:33165944
Large-scale genome-wide association study, using historical data, identifies conserved genetic architecture of cyanogenic glucoside content in cassava (Manihot esculenta Crantz) root. PMID:33164279
Genomic exploration light on multiple origin with potential parsimony-informative sites of the severe acute respiratory syndrome coronavirus 2 in Bangladesh. PMID:33163695
Succinate dehydrogenase gene as a marker for studying Blastocystis genetic diversity. PMID:33163680
The large single-copy (LSC) region functions as a highly effective and efficient molecular marker for accurate authentication of medicinal Dendrobium species. PMID:33163349
A targeted sequence capture array for phylogenetics and population genomics in the Salicaceae. PMID:33163293
Epidemiological hypothesis testing using a phylogeographic and phylodynamic framework. PMID:33159066
Bacterial-Like Nonribosomal Peptide Synthetases Produce Cyclopeptides in the Zygomycetous Fungus Mortierella alpina. PMID:33158886
New insights into the genetic diversity of the stone crayfish: taxonomic and conservation implications. PMID:33158414
Portable Rabies Virus Sequencing in Canine Rabies Endemic Countries Using the Oxford Nanopore MinION. PMID:33158200
Myelin as a regulator of development of the microbiota-gut-brain axis. PMID:33157256
Emergence of a novel chikungunya virus strain bearing the E1:V80A substitution, out of the Mombasa, Kenya 2017-2018 outbreak. PMID:33156857
Muricauda brasiliensis sp. nov., isolated from a mat-forming cyanobacterial culture. PMID:33155174
Miocene Diversification and High-Altitude Adaptation of Parnassius Butterflies (Lepidoptera: Papilionidae) in Qinghai-Tibet Plateau Revealed by Large-Scale Transcriptomic Data. PMID:33153157
Vaginal Microbiota Is Stable throughout the Estrous Cycle in Arabian Maress. PMID:33153053
PRE-1 Revealed Previous Unknown Introgression Events in Eurasian Boars during the Middle Pleistocene. PMID:33151306
Oceanic dispersal barriers in a holoplanktonic gastropod. PMID:33150701
First confirmed record of Trichobilharzia franki Müller & Kimmig, 1994, from Radix auricularia (Linnaeus, 1758) for Austria. PMID:33150513
Isolation and evolutionary analyses of porcine epidemic diarrhea virus in Asia. PMID:33150069
In-depth transcriptome reveals the potential biotechnological application of Bothrops jararaca venom gland. PMID:33149734
Morphological and phylogenetic characterisations reveal three new species of Samsoniella (Cordycipitaceae, Hypocreales) from Guizhou, China. PMID:33149720
Genome-scale phylogeny and contrasting modes of genome evolution in the fungal phylum Ascomycota. PMID:33148650
The Genus Pratylenchus (Nematoda: Pratylenchidae) in Israel: From Taxonomy to Control Practices. PMID:33147883
Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research. PMID:33147627
Novel Type V-A CRISPR Effectors Are Active Nucleases with Expanded Targeting Capabilities. PMID:33146573
A New Dinoflagellate Genome Illuminates a Conserved Gene Cluster Involved in Sunscreen Biosynthesis. PMID:33146374
Genetic diversity analysis of papaya leaf distortion mosaic virus isolates infecting transgenic papaya "Huanong No. 1" in South China. PMID:33144992
Distribution and biogeography of Sanguina snow algae: Fine-scale sequence analyses reveal previously unknown population structure. PMID:33144969
Revealing fine-scale spatiotemporal differences in SARS-CoV-2 introduction and spread. PMID:33144575
Geothermal Gases Shape the Microbial Community of the Volcanic Soil of Pantelleria, Italy. PMID:33144309
Molecular epidemiology of fowl adenoviruses in Greece. PMID:33142516
Evidence supporting the microbiota-gut-brain axis in a songbird. PMID:33142087
Culicidae evolutionary history focusing on the Culicinae subfamily based on mitochondrial phylogenomics. PMID:33139764
A catalogue of biochemically diverse CRISPR-Cas9 orthologs. PMID:33139742
Distance metrics for ranked evolutionary trees. PMID:33139566
Expanding the Geographic Characterisation of Epstein-Barr Virus Variation through Gene-Based Approaches. PMID:33138327
A spectrum of verticality across genes. PMID:33137105
CATH functional families predict functional sites in proteins. PMID:33135053
Similar mycorrhizal fungal communities associated with epiphytic and lithophytic orchids of Coelogyne corymbosa. PMID:33134620
The complete plastome sequences of five Aponogeton species (Aponogetonaceae): Insights into the structural organization and mutational hotspots. PMID:33134616
SURF1 related Leigh syndrome: Clinical and molecular findings of 16 patients from Turkey. PMID:33134083
Characterization of the Complete Mitochondrial Genomes of Two Sibling Species of Parasitic Roundworms, Haemonchus contortus and Teladorsagia circumcincta. PMID:33133162
Transit From Autotrophism to Heterotrophism: Sequence Variation and Evolution of Chloroplast Genomes in Orobanchaceae Species. PMID:33133143
Directional divergence of Ep300 duplicates in teleosts and its implications. PMID:33129255
Evolution of the Brassicaceae-specific MS5-Like family and neofunctionalization of the novel MALE STERILITY 5 gene essential for male fertility in Brassica napus. PMID:33128826
Genomic surveillance of COVID-19 cases in Beijing. PMID:33127911
Hikarchaeia demonstrate an intermediate stage in the methanogen-to-halophile transition. PMID:33127909
Molecular Architecture of Early Dissemination and Massive Second Wave of the SARS-CoV-2 Virus in a Major Metropolitan Area. PMID:33127862
Dilution-to-Stimulation/Extinction Method: a Combination Enrichment Strategy To Develop a Minimal and Versatile Lignocellulolytic Bacterial Consortium. PMID:33127812
Expanding magnetic organelle biogenesis in the domain Bacteria. PMID:33126926
Review on the molecular study of the Diplozoidae: analyses of currently available genetic data, what it tells us, and where to go from here. PMID:33126913
Genomic and phylogenetic characterization of ChPV2, a novel goat PV closely related to the Xi-PV1 species infecting bovines. PMID:33126890
Molecular Diagnosis, Prevalence and Importance of Zoonotic Vector-Borne Pathogens in Cuban Shelter Dogs-A Preliminary Study. PMID:33126690
Comparative Genome Analysis of 33 Chlamydia Strains Reveals Characteristic Features of Chlamydia Psittaci and Closely Related Species. PMID:33126635
Geographically structured genomic diversity of non-human primate-infecting Treponema pallidum subsp. pertenue. PMID:33125317
Comprehensive screening of genomic and metagenomic data reveals a large diversity of tetracycline resistance genes. PMID:33125315
PUMAA: A Platform for Accessible Microbiome Analysis in the Undergraduate Classroom. PMID:33123113
The Transfer of the Ferredoxin Gene From the Chloroplast to the Nuclear Genome Is Ancient Within the Paraphyletic Genus Thalassiosira. PMID:33123095
Metagenomic Approach with the NetoVIR Enrichment Protocol Reveals Virus Diversity within Ethiopian Honey Bees (Apis mellifera simensis). PMID:33121140
Desert truffle genomes reveal their reproductive modes and new insights into plant-fungal interaction and ectendomycorrhizal lifestyle. PMID:33118170
A Phylogenetic Rate Parameter Indicates Different Sequence Divergence Patterns in Orthologs and Paralogs. PMID:33118098
Ventral dermatitis in rowi (Apteryx rowi) caused by cutaneous capillariasis. PMID:33117650
Variation in Botryosphaeriaceae from Eucalyptus plantations in YunNan Province in southwestern China across a climatic gradient. PMID:33117629
Genetic, transcriptional, and regulatory landscape of monolignol biosynthesis pathway in Miscanthus × giganteus. PMID:33117433
Four new species of Trichoderma in the Harzianum clade from northern China. PMID:33117081
Fungal Planet description sheets: 1042-1111. PMID:33116344
Phylogeny and species delimitation of Strobilomyces (Boletaceae), with an emphasis on the Asian species. PMID:33116338
Enteric neurons increase maternal food intake during reproduction. PMID:33116314
Cultivated Tomato (Solanum lycopersicum L.) Suffered a Severe Cytoplasmic Bottleneck during Domestication: Implications from Chloroplast Genomes. PMID:33114641
The Untapped Australasian Diversity of Astaxanthin-Producing Yeasts with Biotechnological Potential-Phaffia australis sp. nov. and Phaffia tasmanica sp. nov. PMID:33114402
High-Density Amplicon Sequencing Identifies Community Spread and Ongoing Evolution of SARS-CoV-2 in the Southern United States. PMID:33113345
Acidification decreases microbial community diversity in the Salish Sea, a region with naturally high pCO2. PMID:33112901
The role of the cytoskeletal proteins MreB and FtsZ in multicellular cyanobacteria. PMID:33112491
Mosaic genome evolution and phylogenetics of Chrysodeixis includens nucleopolyhedrovirus (ChinNPV) and virulence of seven new isolates from the Brazilian states of Minas Gerais and Mato Grosso. PMID:33111162
Comparative ACE2 variation and primate COVID-19 risk. PMID:33110195
Estimation of Full-Length TprK Diversity in Treponema pallidum subsp. pallidum. PMID:33109767
Origins and Molecular Evolution of the NusG Paralog RfaH. PMID:33109766
A CozE Homolog Contributes to Cell Size Homeostasis of Streptococcus pneumoniae. PMID:33109762
Population Analysis of Staphylococcus aureus Reveals a Cryptic, Highly Prevalent Superantigen SElW That Contributes to the Pathogenesis of Bacteremia. PMID:33109757
phyloFlash: Rapid Small-Subunit rRNA Profiling and Targeted Assembly from Metagenomes. PMID:33109753
Developmental constraint shaped genome evolution and erythrocyte loss in Antarctic fishes following paleoclimate change. PMID:33108368
Drivers and sites of diversity in the DNA adenine methylomes of 93 Mycobacterium tuberculosis complex clinical isolates. PMID:33107429
Timing the origin of eukaryotic cellular complexity with ancient duplications. PMID:33106602
Defining the sediment prokaryotic communities of the Indian River Lagoon, FL, USA, an Estuary of National Significance. PMID:33105476
Microbiota profile and efficacy of probiotic supplementation on laxation in adults affected by Prader-Willi Syndrome: A randomized, double-blind, crossover trial. PMID:33103385
Anaerobic Conversion of Saline Phenol-Containing Wastewater Under Thermophilic Conditions in a Membrane Bioreactor. PMID:33102455
Characteristics of Organellar Genomes and Nuclear Internal Transcribed Spacers in the Tertiary Relict Genus Dipelta and Their Phylogenomic Implications. PMID:33101393
Molecular Evolution and Expansion of the KUP Family in the Allopolyploid Cotton Species Gossypium hirsutum and Gossypium barbadense. PMID:33101325
Cycloheximide-Producing Streptomyces Associated With Xyleborinus saxesenii and Xyleborus affinis Fungus-Farming Ambrosia Beetles. PMID:33101237
Seasonal and Geographical Transitions in Eukaryotic Phytoplankton Community Structure in the Atlantic and Pacific Oceans. PMID:33101224
Characterization of an eutherian gene cluster generated after transposon domestication identifies Bex3 as relevant for advanced neurological functions. PMID:33100228
Microbiome and environment explain the absence of correlations between consumers and their diet in Bornean microsnails. PMID:33098661
Increased power from conditional bacterial genome-wide association identifies macrolide resistance mutations in Neisseria gonorrhoeae. PMID:33097713
A duplex real-time PCR with probe for simultaneous detection of Geosmithia morbida and its vector Pityophthorus juglandis. PMID:33095845
Genome streamlining in a minute herbivore that manipulates its host plant. PMID:33095158
Sequencing identifies multiple early introductions of SARS-CoV-2 to the New York City region. PMID:33093069
Coding-Complete Genome Sequences of 23 SARS-CoV-2 Samples from the Philippines. PMID:33093050
Genetic and phylogenetic analysis of canine bufavirus from Anhui Province, Eastern China. PMID:33091576
Biological invasions alter environmental microbiomes: A meta-analysis. PMID:33091062
Positive selection within the genomes of SARS-CoV-2 and other Coronaviruses independent of impact on protein function. PMID:33088633
Conflicting phylogenetic signals in plastomes of the tribe Laureae (Lauraceae). PMID:33088627
Systematic analysis of the OFP genes in six Rosaceae genomes and their roles in stress response in Chinese pear (Pyrus bretschneideri). PMID:33088052
The complete chloroplast genome of the rare species Epimedium tianmenshanensis and comparative analysis with related species. PMID:33088051
Microbial community dynamics in phyto-thermotherapy baths viewed through next generation sequencing and metabolomics approach. PMID:33087817
The Cryptic Plastid of Euglena longa Defines a New Type of Nonphotosynthetic Plastid Organelle. PMID:33087518
Metatranscriptomic Identification of Diverse and Divergent RNA Viruses in Green and Chlorarachniophyte Algae Cultures. PMID:33086653
Plastome structure and adaptive evolution of Calanthe s.l. species. PMID:33083127
The highly rearranged mitochondrial genomes of three economically important scale insects and the mitochondrial phylogeny of Coccoidea (Hemiptera: Sternorrhyncha). PMID:33083111
The genome of Chinese flowering cherry (Cerasus serrulata) provides new insights into Cerasus species. PMID:33082971
Diversity of voltage-gated potassium channels and cyclic nucleotide-binding domain-containing channels in eukaryotes. PMID:33082475
Investigation of Outbreaks of Extended-Spectrum Beta-Lactamase-Producing Klebsiella Pneumoniae in Three Neonatal Intensive Care Units Using Whole Genome Sequencing. PMID:33081087
Combined Comparative Genomics and Gene Expression Analyses Provide Insights into the Terpene Synthases Inventory in Trichoderma. PMID:33081019
Genome-wide analysis of the Firmicutes illuminates the diderm/monoderm transition. PMID:33077930
Genome of the four-finger threadfin Eleutheronema tetradactylum (Perciforms: Polynemidae). PMID:33076831
Predicting antimicrobial resistance using conserved genes. PMID:33075053
Towards a unified classification for human respiratory syncytial virus genotypes. PMID:33072402
Role of BgaA as a Pneumococcal Virulence Factor Elucidated by Molecular Evolutionary Analysis. PMID:33072054
No Assembly Required: Using BTyper3 to Assess the Congruency of a Proposed Taxonomic Framework for the Bacillus cereus Group With Historical Typing Methods. PMID:33072050
Large scale genome reconstructions illuminate Wolbachia evolution. PMID:33067437
A Survey of Mycoviral Infection in Fusarium spp. Isolated from Maize and Sorghum in Argentina Identifies the First Mycovirus from Fusarium verticillioides. PMID:33066620
Complete Chloroplast Genome of Argania spinosa: Structural Organization and Phylogenetic Relationships in Sapotaceae. PMID:33066261
Insights into Genomic Epidemiology, Evolution, and Transmission Dynamics of Genotype VII of Class II Newcastle Disease Virus in China. PMID:33066232
Multiple Non-Species-Specific Pathogens Possibly Triggered the Mass Mortality in Pinna nobilis. PMID:33066230
Adaptive evolution shapes the present-day distribution of the thermal sensitivity of population growth rate. PMID:33064736
Insights into population structure of East African sweetpotato cultivars from hybrid assembly of chloroplast genomes. PMID:33062940
Two extremely rare new species of fossorial salamanders of the genus Oedipina (Plethodontidae) from northwestern Ecuador. PMID:33062424
Cultivable marine fungi from the Arctic Archipelago of Svalbard and their antibacterial activity. PMID:33062384
Molecular data reveals a new holomorphic marine fungus, Halobyssothecium estuariae, and the asexual morph of Keissleriella phragmiticola. PMID:33062380
Complete Coding Sequences of 22 East/Central/South African Genotype Chikungunya Virus Isolates from Thailand (2018 to 2019). PMID:33060262
Reconstruction of ancient homeobox gene linkages inferred from a new high-quality assembly of the Hong Kong oyster (Magallana hongkongensis) genome. PMID:33059600
Genomic evidence for reinfection with SARS-CoV-2: a case study. PMID:33058797
Taxonomic notes on Leptonetidae (Arachnida, Araneae) from China, with descriptions of one new genus and eight new species. PMID:33058572
Stabilizing AqdC, a Pseudomonas Quinolone Signal-Cleaving Dioxygenase from Mycobacteria, by FRESCO-Based Protein Engineering. PMID:33058333
Parallel ddRAD and Genome Skimming Analyses Reveal a Radiative and Reticulate Evolutionary History of the Temperate Bamboos. PMID:33057686
Mind the Outgroup and Bare Branches in Total-Evidence Dating: a Case Study of Pimpliform Darwin Wasps (Hymenoptera, Ichneumonidae). PMID:33057674
Comparative Genomics Analyses of Lifestyle Transitions at the Origin of an Invasive Fungal Pathogen in the Genus Cryphonectria. PMID:33055257
Accurate reconstruction of bacterial pan- and core genomes with PEPPAN. PMID:33055096
Human pegivirus (HPgV, GBV-C) RNA in volunteer blood donors from a public hemotherapy service in Northern Brazil. PMID:33054824
Two divergent chloroplast genome sequence clades captured in the domesticated rice gene pool may have significance for rice production. PMID:33054735
Characterization and evolutionary origin of novel C<sub>2</sub>H<sub>2</sub> zinc finger protein (ZNF648) required for both erythroid and megakaryocyte differentiation in humans. PMID:33054117
m6A RNA Methylation in Marine Plants: First Insights and Relevance for Biological Rhythms. PMID:33053767
Genomic and transcriptional analysis of genes containing fibrinogen and IgSF domains in the schistosome vector Biomphalaria glabrata, with emphasis on the differential responses of snails susceptible or resistant to Schistosoma mansoni. PMID:33052953
Aspergillus fumigatus G-Protein Coupled Receptors GprM and GprJ Are Important for the Regulation of the Cell Wall Integrity Pathway, Secondary Metabolite Production, and Virulence. PMID:33051372
From People to Panthera: Natural SARS-CoV-2 Infection in Tigers and Lions at the Bronx Zoo. PMID:33051368
EXO70A2 Is Critical for Exocyst Complex Function in Pollen Development. PMID:33051268
Identification of polycomb repressive complex 1 and 2 core components in hexaploid bread wheat. PMID:33050875
Characterization of the Complete Mitochondrial Genomes of Two Species with Preliminary Investigation on Phylogenetic Status of Zyginellini (Hemiptera: Cicadellidae: Typhlocybinae). PMID:33050478
Unmapped RNA Virus Diversity in Termites and their Symbionts. PMID:33050289
Chloroplast Genome Analysis of Two Medicinal Coelogyne spp. (Orchidaceae) Shed Light on the Genetic Information, Comparative Genomics, and Species Identification. PMID:33050285
Evolutionary Analysis of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Reveals Genomic Divergence with Implications for Universal Vaccine Efficacy. PMID:33050053
Multilocus phylogeny- and fruiting feature-assisted delimitation of European Cyclocybe aegerita from a new Asian species complex and related species. PMID:33046967
Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits. PMID:33046698
COVID-Align: accurate online alignment of hCoV-19 genomes using a profile HMM. PMID:33045068
Single-Cell Transcriptomics of Abedinium Reveals a New Early-Branching Dinoflagellate Lineage. PMID:33045041
Whole genome sequencing of Plasmodium vivax isolates reveals frequent sequence and structural polymorphisms in erythrocyte binding genes. PMID:33044985
Flexible, Functional, and Familiar: Characteristics of SARS-CoV-2 Spike Protein Evolution. PMID:33042039
Identification and Characterization of Neuropeptides and Their G Protein-Coupled Receptors (GPCRs) in the Cowpea Aphid Aphis craccivora. PMID:33042012
Hybridization and recurrent evolution of left-right reversal in the land snail genus Schileykula (Orculidae, Pulmonata). PMID:33041524
Dispersal out of Wallacea spurs diversification of Pteropus flying foxes, the world's largest bats (Mammalia: Chiroptera). PMID:33041434
The elephant grass (Cenchrus purpureus) genome provides insights into anthocyanidin accumulation and fast growth. PMID:33040437
Phylogenetic inference enables reconstruction of a long-overlooked outbreak of almond leaf scorch disease (Xylella fastidiosa) in Europe. PMID:33037293
Chemotaxonomic Monitoring of Genetically Authenticated Amomi Fructus Using High-Performance Liquid Chromatography-Diode Array Detector with Chemometric Analysis. PMID:33036491
Identification of Entomopathogenic Fungi as Naturally Occurring Enemies of the Invasive Oak Lace Bug, Corythucha arcuata (Say) (Hemiptera: Tingidae). PMID:33036392
Pollinators drive floral evolution in an Atlantic Forest genus. PMID:33033591
Origin and adaptation to high altitude of Tibetan semi-wild wheat. PMID:33033250
The mole genome reveals regulatory rearrangements associated with adaptive intersexuality. PMID:33033216
High conservation combined with high plasticity: genomics and evolution of Borrelia bavariensis. PMID:33032522
A plate of viruses: Viral metagenomics of supermarket chicken, pork and beef from Brazil. PMID:33032031
Mitochondrial Genome Evolution of Placozoans: Gene Rearrangements and Repeat Expansions. PMID:33031489
Phylogenomics from transcriptomic "bycatch" clarify the origins and diversity of avian trypanosomes in North America. PMID:33031471
Real-time tracking of Tomato brown rugose fruit virus (ToBRFV) outbreaks in the Netherlands using Nextstrain. PMID:33031371
Common origin of ornithine-urea cycle in opisthokonts and stramenopiles. PMID:33028894
The flattened and needlelike leaves of the pine family (Pinaceae) share a conserved genetic network for adaxial-abaxial polarity but have diverged for photosynthetic adaptation. PMID:33028198
Analysis of Genomic Characteristics and Transmission Routes of Patients With Confirmed SARS-CoV-2 in Southern California During the Early Stage of the US COVID-19 Pandemic. PMID:33026453
Molecular Architecture of Early Dissemination and Massive Second Wave of the SARS-CoV-2 Virus in a Major Metropolitan Area. PMID:33024977
Quinquelaophonte enormis sp. nov., a new interstitial copepod (Harpacticoida: Laophontidae) from Korea. PMID:33024639
Variation of mitochondrial minichromosome composition in Hoplopleura lice (Phthiraptera: Hoplopleuridae) from rats. PMID:33023651
Surveillance of Human Rotavirus in Wuhan, China (2011-2019): Predominance of G9P[8] and Emergence of G12. PMID:33023203
Chromoblastomycosis in an Endemic Area of Brazil: A Clinical-Epidemiological Analysis and a Worldwide Haplotype Network. PMID:33022951
New Environment, New Invaders-Repeated Horizontal Transfer of LINEs to Sea Snakes. PMID:33022046
Benchmarking Orthogroup Inference Accuracy: Revisiting Orthobench. PMID:33022036
Mitochondrial genomes of stick insects (Phasmatodea) and phylogenetic considerations. PMID:33021991
First confirmed occurrence of the yellow fever virus and dengue virus vector Aedes (Stegomyia) luteocephalus (Newstead, 1907) in Mozambique. PMID:33019944
Co-infection of Malassezia sympodialis With Bacterial Pathobionts Pseudomonas aeruginosa or Staphylococcus aureus Leads to Distinct Sinonasal Inflammatory Responses in a Murine Acute Sinusitis Model. PMID:33014894
Reassortment Between Divergent Strains of Camp Ripley Virus (Hantaviridae) in the Northern Short-Tailed Shrew (Blarina brevicauda). PMID:33014888
IMA Genome - F13: Draft genome sequences of Ambrosiella cleistominuta, Cercospora brassicicola, C. citrullina, Physcia stellaris, and Teratosphaeria pseudoeucalypti. PMID:33014691
RskA Is a Dual Function Activator-Inhibitor That Controls SigK Activity Across Distinct Bacterial Genera. PMID:33013790
Dysbiosis in the Dead: Human Postmortem Microbiome Beta-Dispersion as an Indicator of Manner and Cause of Death. PMID:33013786
Genomic Survey of E. coli From the Bladders of Women With and Without Lower Urinary Tract Symptoms. PMID:33013764
Identification and Expression Profile Analysis of Chemosensory Genes From the Antennal Transcriptome of Bamboo Locust (Ceracris kiangsu). PMID:33013431
Variola virus genome sequenced from an eighteenth-century museum specimen supports the recent origin of smallpox. PMID:33012235
Paleogenomic insights into the red complex bacteria Tannerella forsythia in Pre-Hispanic and Colonial individuals from Mexico. PMID:33012233
Biased Gene Retention in the Face of Introgression Obscures Species Relationships. PMID:33011798
Phylogenomic analysis sheds light on the evolutionary pathways towards acoustic communication in Orthoptera. PMID:33009390
Migration dynamics of an important rice pest: The brown planthopper (Nilaparvata lugens) across Asia-Insights from population genomics. PMID:33005233
Multicentric origin and diversification of atp6-orf79-like structures reveal mitochondrial gene flows in Oryza rufipogon and Oryza sativa. PMID:33005224
A new species of snailfish of the genus Paraliparis (Liparidae) from the western North Pacific, with a redescription of the poorly known species Paraliparis mandibularis. PMID:33005085
The complete chloroplast genome of Gleditsia sinensis and Gleditsia japonica: genome organization, comparative analysis, and development of taxon specific DNA mini-barcodes. PMID:33005000
Large-scale phylogenomics reveals ancient introgression in Asian Hepatica and new insights into the origin of the insular endemic Hepatica maxima. PMID:33004955
Draft Genome Sequence of a Novel "Candidatus Liberibacter" Species Detected in a Zanthoxylum Species from Bhutan. PMID:33004455
Draft Genome Sequences of Four Aspergillus Section Fumigati Clinical Strains. PMID:33004453
Genome Sequence of the Banana Aphid, Pentalonia nigronervosa Coquerel (Hemiptera: Aphididae) and Its Symbionts. PMID:33004433
Genetic Diversity of Serine Protease Inhibitors in Myxozoan (Cnidaria, Myxozoa) Fish Parasites. PMID:33003479
High-quality nuclear genome for Sarcoptes scabiei-A critical resource for a neglected parasite. PMID:33001992
The complete chloroplast genome sequence of Gynostemma yixingense and comparative analysis with congeneric species. PMID:33001132
Dynamically evolving novel overlapping gene as a factor in the SARS-CoV-2 pandemic. PMID:33001029
Experimental Infection and Genetic Characterization of Two Different Capripox Virus Isolates in Small Ruminants. PMID:32998423
Chicken Astrovirus (CAstV) Molecular Studies Reveal Evidence of Multiple Past Recombination Events in Sequences Originated from Clinical Samples of White Chick Syndrome (WCS) in Western Canada. PMID:32998356
An evolutionary portrait of the progenitor SARS-CoV-2 and its dominant offshoots in COVID-19 pandemic. PMID:32995781
Neodactylariales, Neodactylariaceae (Dothideomycetes, Ascomycota): new order and family, with a new species from China. PMID:32994703
Dental black plaque: metagenomic characterization and comparative analysis with white-plaque. PMID:32994464
Seven New Cytotoxic and Antimicrobial Xanthoquinodins from Jugulospora vestita. PMID:32992954
Novel Insights into the Effect of Pythium Strains on Rapeseed Metabolism. PMID:32992822
The Female-Specific W Chromosomes of Birds Have Conserved Gene Contents but Are Not Feminized. PMID:32992746
Meta-Transcriptomic Discovery of a Divergent Circovirus and a Chaphamaparvovirus in Captive Reptiles with Proliferative Respiratory Syndrome. PMID:32992674
Analysis of the Codon Usage Pattern of HA and NA Genes of H7N9 Influenza A Virus. PMID:32992529
Structural and Functional Analysis of the D614G SARS-CoV-2 Spike Protein Variant. PMID:32991842
Sleeve gastrectomy prevents hypertension associated with unique shifts in the gut microbiome. PMID:32989546
Takeaways from Mobile DNA Barcoding with BentoLab and MinION. PMID:32987804
Interrogating Genomic-Scale Data to Resolve Recalcitrant Nodes in the Spider Tree of Life. PMID:32986823
Chloroplast genome features of an important medicinal and edible plant: Houttuynia cordata (Saururaceae). PMID:32986773
Polyphyletic origin, intracellular invasion, and meiotic genes in the putatively asexual agamococcidians (Apicomplexa incertae sedis). PMID:32985520
Selective pressure on SARS-CoV-2 protein coding genes and glycosylation site prediction. PMID:32984566
Sequencing and Analysis of the Complete Organellar Genomes of Prototheca wickerhamii. PMID:32983192
High-Throughput Sequencing and Unsupervised Analysis of Formyltetrahydrofolate Synthetase (FTHFS) Gene Amplicons to Estimate Acetogenic Community Structure. PMID:32983047
VHSV Single Amino Acid Polymorphisms (SAPs) Associated With Virulence in Rainbow Trout. PMID:32983011
Comparative analysis of chloroplast genomes in Vasconcellea pubescens A.DC. and Carica papaya L. PMID:32978465
Genome Analysis of a Novel Clade b Betabaculovirus Isolated from the Legume Pest Matsumuraeses phaseoli (Lepidoptera: Tortricidae). PMID:32977681
Comprehensive Analyses of the Complete Mitochondrial Genome of Figulus binodulus (Coleoptera: Lucanidae). PMID:32976575
A survey of RNA secondary structural propensity encoded within human herpesvirus genomes: global comparisons and local motifs. PMID:32974099
Different Families of Retrotransposons and DNA Transposons Are Actively Transcribed and May Have Transposed Recently in Physcomitrium (Physcomitrella) patens. PMID:32973835
Pathogenomics Characterization of an Emerging Fungal Pathogen, Fusarium oxysporum f. sp. lycopersici in Greenhouse Tomato Production Systems. PMID:32973719
Paralogs and off-target sequences improve phylogenetic resolution in a densely-sampled study of the breadfruit genus (Artocarpus, Moraceae). PMID:32970819
A symbiotic nutrient exchange within the cyanosphere microbiome of the biocrust cyanobacterium, Microcoleus vaginatus. PMID:32968213
Ancestral sequence reconstruction produces thermally stable enzymes with mesophilic enzyme-like catalytic properties. PMID:32968141
Tissue Tropisms of Avian Influenza A Viruses Affect Their Spillovers from Wild Birds to Pigs. PMID:32967956
African Swine Fever Circulation among Free-Ranging Pigs in Sardinia: Data from the Eradication Program. PMID:32967098
Chromosome-Scale Genome Assemblies of Aphids Reveal Extensively Rearranged Autosomes and Long-Term Conservation of the X Chromosome. PMID:32966576
Comparative genomic analyses illuminate the distinct evolution of megabats within Chiroptera. PMID:32966557
The Complete Chloroplast Genome of Arabidopsis thaliana Isolated in Korea (Brassicaceae): An Investigation of Intraspecific Variations of the Chloroplast Genome of Korean A. thaliana. PMID:32964010
Comprehensive genomic analysis reveals dynamic evolution of endogenous retroviruses that code for retroviral-like protein domains. PMID:32963593
Single cell transcriptomes reveal expression patterns of chemoreceptor genes in olfactory sensory neurons of the Caribbean spiny lobster, Panulirus argus. PMID:32962631
Diet Breadth Affects Bacterial Identity but Not Diversity in the Pollen Provisions of Closely Related Polylectic and Oligolectic Bees. PMID:32962223
Novel Gene Rearrangement and the Complete Mitochondrial Genome of Cynoglossus monopus: Insights into the Envolution of the Family Cynoglossidae (Pleuronectiformes). PMID:32962212
Metagenomic sequencing of stool samples in Bangladeshi infants: virome association with poliovirus shedding after oral poliovirus vaccination. PMID:32958861
Ultrasensitive CRISPR-based diagnostic for field-applicable detection of Plasmodium species in symptomatic and asymptomatic malaria. PMID:32958655
Evolutionary Study of the Crassphage Virus at Gene Level. PMID:32957679
Molecular Characterisation of a Novel and Highly Divergent Passerine Adenovirus 1. PMID:32957674
A Highly Conserved Iron-Sulfur Cluster Assembly Machinery between Humans and Amoeba Dictyostelium discoideum: The Characterization of Frataxin. PMID:32957566
Re-Evaluation of the Order Sordariales: Delimitation of Lasiosphaeriaceae s. str., and Introduction of the New Families Diplogelasinosporaceae, Naviculisporaceae, and Schizotheciaceae. PMID:32957559
Cross-serotypically conserved epitope recommendations for a universal T cell-based dengue vaccine. PMID:32956362
Dietary osteopontin-enriched algal protein as nutritional support in weaned pigs infected with F18-fimbriated enterotoxigenic Escherichia coli. PMID:32954424
"Into and Out of" the Qinghai-Tibet Plateau and the Himalayas: Centers of origin and diversification across five clades of Eurasian montane and alpine passerine birds. PMID:32953061
Plasmopara elegantissima sp. nov. (Oomycota, Peronosporales), a Downy Mildew Species Specialized to Impatiens textori (Balsaminaceae). PMID:32952413
Two New Species of Laccaria (Agaricales, Basidiomycota) from Korea. PMID:32952411
A novel negevirus isolated from Aedes vexans mosquitoes in Finland. PMID:32951134
Flatfishes colonised freshwater environments by acquisition of various DHA biosynthetic pathways. PMID:32948803
Genome-Centric Metagenomic Insights into the Impact of Alkaline/Acid and Thermal Sludge Pretreatment on the Microbiome in Digestion Sludge. PMID:32948522
Identification and Distribution of Novel Cressdnaviruses and Circular molecules in Four Penguin Species in South Georgia and the Antarctic Peninsula. PMID:32947826
Long-read only assembly of Drechmeria coniospora genomes reveals widespread chromosome plasticity and illustrates the limitations of current nanopore methods. PMID:32947622
Phylogenetic diversity in fim and mfa gene clusters between Porphyromonas gingivalis and Porphyromonas gulae, as a potential cause of host specificity. PMID:32944148
Comparative genomics reveals insights into cyanobacterial evolution and habitat adaptation. PMID:32943748
Characterization of raffinose metabolism genes uncovers a wild Arachis galactinol synthase conferring tolerance to abiotic stresses. PMID:32943670
Skeletal muscle and cardiac transcriptomics of a regionally endothermic fish, the Pacific bluefin tuna, Thunnus orientalis. PMID:32942994
SARS-CoV-2 ORF3b Is a Potent Interferon Antagonist Whose Activity Is Increased by a Naturally Occurring Elongation Variant. PMID:32941788
Tracing the Diploid Ancestry of the Cultivated Octoploid Strawberry. PMID:32941604
Genetic grouping of SARS-CoV-2 coronavirus sequences using informative subtype markers for pandemic spread visualization. PMID:32941419
Heteroonops (Araneae, Oonopidae) spiders from Hispaniola: the discovery of ten new species. PMID:32939145
Biogeographic problem-solving reveals the Late Pleistocene translocation of a short-faced bear to the California Channel Islands. PMID:32938967
Reconstruction of the birth of a male sex chromosome present in Atlantic herring. PMID:32938798
Microbial dark matter filling the niche in hypersaline microbial mats. PMID:32938503
Spatio-Temporal Mutational Profile Appearances of Swedish SARS-CoV-2 during the Early Pandemic. PMID:32937868
Structural Modeling of Cell Wall Peptidase CwpFM (EntFM) Reveals Distinct Intrinsically Disordered Extensions Specific to Pathogenic Bacillus cereus Strains. PMID:32937845
Comparative sequences of the Wolbachia genomes of drug-sensitive and resistant isolates of Dirofilaria immitis. PMID:32937243
Isolation and characterization of severe acute respiratory syndrome coronavirus 2 in Turkey. PMID:32936826
Identification of Avramr1 from Phytophthora infestans using long read and cDNA pathogen-enrichment sequencing (PenSeq). PMID:32935441
Complete mapping of mutations to the SARS-CoV-2 spike receptor-binding domain that escape antibody recognition. PMID:32935107
Reassessment of Bournea Oliver (Gesneriaceae) based on molecular and palynological evidence. PMID:32934446
Origins and Evolution of Cuticle Biosynthetic Machinery in Land Plants. PMID:32934149
Horizontal Gene Transfer Clarifies Taxonomic Confusion and Promotes the Genetic Diversity and Pathogenicity of Plesiomonas shigelloides. PMID:32934114
Bacteria Contribute to Plant Secondary Compound Degradation in a Generalist Herbivore System. PMID:32934088
Geographic and host distribution of haemosporidian parasite lineages from birds of the family Turdidae. PMID:32933526
Feeding specialization and longer generation time are associated with relatively larger brains in bees. PMID:32933447
Genetic Evidence for a Mixed Composition of the Genus Myoxocephalus (Cottoidei: Cottidae) Necessitates Generic Realignment. PMID:32933022
CoV-Seq, a New Tool for SARS-CoV-2 Genome Analysis and Visualization: Development and Usability Study. PMID:32931441
The Molecular Machinery of Gametogenesis in Geodia Demosponges (Porifera): Evolutionary Origins of a Conserved Toolkit across Animals. PMID:32929503
Bridging the membrane lipid divide: bacteria of the FCB group superphylum have the potential to synthesize archaeal ether lipids. PMID:32929208
The Globin Gene Family in Arthropods: Evolution and Functional Diversity. PMID:32922435
A graph-based approach identifies dynamic H-bond communication networks in spike protein S of SARS-CoV-2. PMID:32919067
Community composition of arctic root-associated fungi mirrors host plant phylogeny. PMID:32918451
Comparative analyses of saprotrophy in Salisapilia sapeloensis and diverse plant pathogenic oomycetes reveal lifestyle-specific gene expression. PMID:32918444
Multiple transcriptome mining coupled with tissue specific molecular cloning and mass spectrometry provide insights into agatoxin-like peptide conservation in decapod crustaceans. PMID:32916171
Origin and Evolution of Fusidane-Type Antibiotics Biosynthetic Pathway through Multiple Horizontal Gene Transfers. PMID:32915993
Revision of Coelastrella (Scenedesmaceae, Chlorophyta) and first register of this green coccoid microalga for continental Norway. PMID:32914262
Plastid transit peptides-where do they come from and where do they all belong? Multi-genome and pan-genomic assessment of chloroplast transit peptide evolution. PMID:32913678
Genomic epidemiology and evolutionary dynamics of respiratory syncytial virus group B in Kilifi, Kenya, 2015-17. PMID:32913665
Emergence and evolution of highly pathogenic porcine epidemic diarrhea virus by natural recombination of a low pathogenic vaccine isolate and a highly pathogenic strain in the spike gene. PMID:32913664
Increased resolution of African swine fever virus genome patterns based on profile HMMs of protein domains. PMID:32913663
A role for gorilla APOBEC3G in shaping lentivirus evolution including transmission to humans. PMID:32913367
Evolution of isoprenyl diphosphate synthase-like terpene synthases in fungi. PMID:32913319
Cryptic transmission of SARS-CoV-2 in Washington state. PMID:32913002
The emergence of SARS-CoV-2 in Europe and North America. PMID:32912998
Annotated genome sequences of the carnivorous plant Roridula gorgonias and a non-carnivorous relative, Clethra arborea. PMID:32912303
Characterization of Two Complete Mitochondrial Genomes of Ledrinae (Hemiptera: Cicadellidae) and Phylogenetic Analysis. PMID:32911645
Fifty years after: A taxonomic revision of the amphibian species from the Ecuadorian biodiversity hotspot Abra de Zamora, with description of two new Pristimantis species. PMID:32911497
Cell Type-Dependent Escape of Capsid Inhibitors by Simian Immunodeficiency Virus SIVcpz. PMID:32907979
Metagenomic Analysis of the Virome of Mosquito Excreta. PMID:32907949
The Husavirus Posa-Like Viruses in China, and a New Group of Picornavirales. PMID:32906743
A Fresh Look at Grape Powdery Mildew (Erysiphe necator) A and B Genotypes Revealed Frequent Mixed Infections and Only B Genotypes in Flag Shoot Samples. PMID:32906683
BioAider: An efficient tool for viral genome analysis and its application in tracing SARS-CoV-2 transmission. PMID:32904401
A new genus of Bambusicolaceae (Pleosporales) on Corylus avellana (Fagales) from Italy. PMID:32904352
A new species of Nephus (Nephus) (Coleoptera, Coccinellidae) described from Reunion Island. PMID:32904313
Investigation of Bartonella spp. in brazilian mammals with emphasis on rodents and bats from the Atlantic Forest. PMID:32904298
The phoma-like dilemma. PMID:32904212
A new species of Raffaelea from beetle-infested Leucaena leucocephala. PMID:32904154
Bolbea parasitica gen. et sp. nov., a cultivable holocarpic parasitoid of the early-diverging Saprolegniomycetes. PMID:32904153
The PhyloCode applied to Cintractiellales, a new order of smut fungi with unresolved phylogenetic relationships in the Ustilaginomycotina. PMID:32904025
Expression Profiles of ANGUSTIFOLIA3 and SHOOT MERISTEMLESS, Key Genes for Meristematic Activity in a One-Leaf Plant Monophyllaea glabra, Revealed by Whole-Mount In Situ Hybridization. PMID:32903463
Analysis of partial sequences of the RNA-dependent RNA polymerase gene as a tool for genus and subgenus classification of coronaviruses. PMID:32902374
Predicting the recombination potential of severe acute respiratory syndrome coronavirus 2 and Middle East respiratory syndrome coronavirus. PMID:32902372
Amalgamated cross-species transcriptomes reveal organ-specific propensity in gene expression evolution. PMID:32900997
Obesity-associated microbiota contributes to mucus layer defects in genetically obese mice. PMID:32900852
Survey of Early-Diverging Lineages of Fungi Reveals Abundant and Diverse Mycoviruses. PMID:32900807
Repetitive Elements Contribute to the Diversity and Evolution of Centromeres in the Fungal Genus Verticillium. PMID:32900804
Echolocation call frequency variation in horseshoe bats: molecular basis revealed by comparative transcriptomics. PMID:32900318
An Overview of Duplicated Gene Detection Methods: Why the Duplication Mechanism Has to Be Accounted for in Their Choice. PMID:32899740
Phylogenetic and Comparative Analyses of Complete Chloroplast Genomes of Chinese Viburnum and Sambucus (Adoxaceae). PMID:32899372
Myxosporea (Myxozoa, Cnidaria) Lack DNA Cytosine Methylation. PMID:32898240
Temporal changes in the fecal bacterial community in Holstein dairy calves from birth through the transition to a solid diet. PMID:32898158
Biogeography of marine giant viruses reveals their interplay with eukaryotes and ecological functions. PMID:32895519
Impact and consequences of intensive chemotherapy on intestinal barrier and microbiota in acute myeloid leukemia: the role of mucosal strengthening. PMID:32893715
Comparative Analysis of Bacterial Diversity and Community Structure in the Rhizosphere and Root Endosphere of Two Halophytes, Salicornia europaea and Glaux maritima, Collected from Two Brackish Lakes in Japan. PMID:32893195
Potential causes and consequences of rapid mitochondrial genome evolution in thermoacidophilic Galdieria (Rhodophyta). PMID:32892741
Improved binding of SARS-CoV-2 Envelope protein to tight junction-associated PALS1 could play a key role in COVID-19 pathogenesis. PMID:32891874
Diversity and pathogenicity of Colletotrichum species causing strawberry anthracnose in Taiwan and description of a new species, Colletotrichum miaoliense sp. nov. PMID:32887909
Occurrence of Chlamydiaceae in Raptors and Crows in Switzerland. PMID:32887370
Soil Type Affects Organic Acid Production and Phosphorus Solubilization Efficiency Mediated by Several Native Fungal Strains from Mexico. PMID:32887277
An Unexpectedly Complex Mitoribosome in Andalucia godoyi, a Protist with the Most Bacteria-like Mitochondrial Genome. PMID:32886790
CoreCruncher: Fast and Robust Construction of Core Genomes in Large Prokaryotic Data Sets. PMID:32886787
Colocality to Cofunctionality: Eukaryotic Gene Neighborhoods as a Resource for Function Discovery. PMID:32886760
Early vertebrate origin of CTCFL, a CTCF paralog, revealed by proximity-guided shark genome scaffolding. PMID:32884037
Mitochondrial genomes illuminate the evolutionary history of the Western honey bee (Apis mellifera). PMID:32884034
Disrupted architecture and fast evolution of the mitochondrial genome of Argeia pugettensis (Isopoda): implications for speciation and fitness. PMID:32883208
Genome based evolutionary lineage of SARS-CoV-2 towards the development of novel chimeric vaccine. PMID:32882432
DNA barcoding of Oryza: conventional, specific, and super barcodes. PMID:32880855
Molecular cloning and characterization of HSP60 gene in domestic pigeons (Columba livia) and differential expression patterns under temperature stress. PMID:32880058
Mutation density changes in SARS-CoV-2 are related to the pandemic stage but to a lesser extent in the dominant strain with mutations in spike and RdRp. PMID:32879797
Three new species of Junghuhnia (Polyporales, Basidiomycota) from China. PMID:32879617
Sex-biased patterns shaped the genetic history of Roma. PMID:32879340
Eighteen Coral Genomes Reveal the Evolutionary Origin of Acropora Strategies to Accommodate Environmental Changes. PMID:32877528
Sarcopterygian fin ontogeny elucidates the origin of hands with digits. PMID:32875118
Unveiling Crucivirus Diversity by Mining Metagenomic Data. PMID:32873755
RRE-Finder: a Genome-Mining Tool for Class-Independent RiPP Discovery. PMID:32873609
A Model for the Production of Regulatory Grade Viral Hemorrhagic Fever Exposure Stocks: From Field Surveillance to Advanced Characterization of SFTSV. PMID:32872451
Comparative Genomics and Phylogenetic Analyses of Christia vespertilionis and Urariopsis brevissima in the Tribe Desmodieae (Fabaceae: Papilionoideae) Based on Complete Chloroplast Genomes. PMID:32872316
Determining the Authenticity of Shark Meat Products by DNA Sequencing. PMID:32872285
Exploring Protein Space: From Hydrolase to Ligase by Substitution. PMID:32870983
Phylogenetic analysis of SARS-CoV-2 in the Boston area highlights the role of recurrent importation and superspreading events. PMID:32869040
Plant expression of NifD protein variants resistant to mitochondrial degradation. PMID:32868448
A SARS-CoV-2 vaccine candidate would likely match all currently circulating variants. PMID:32868447
In Vitro Activity of the Ultra-Broad-Spectrum Beta-Lactamase Inhibitor QPX7728 in Combination with Meropenem against Clinical Isolates of Carbapenem-Resistant Acinetobacter baumannii. PMID:32868334
Automatic Identification of Players in the Flavonoid Biosynthesis with Application on the Biomedicinal Plant Croton tiglium. PMID:32867203
Differential Evolution of α-Glucan Water Dikinase (GWD) in Plants. PMID:32867090
Comprehensive evolution and molecular characteristics of a large number of SARS-CoV-2 genomes reveal its epidemic trends. PMID:32866640
Human Adenovirus 7-Associated Hemophagocytic Lymphohistiocytosis-like Illness: Clinical and Virological Characteristics in a Cluster of Five Pediatric Cases. PMID:32866230
LncRNA-SLC16A1-AS1 induces metabolic reprogramming during Bladder Cancer progression as target and co-activator of E2F1. PMID:32863950
A dated phylogeny of the genus Pennantia (Pennantiaceae) based on whole chloroplast genome and nuclear ribosomal 18S-26S repeat region sequences. PMID:32863722
Diversity in the intrinsic apoptosis pathway of nematodes. PMID:32859965
2000-year-old pathogen genomes reconstructed from metagenomic analysis of Egyptian mummified individuals. PMID:32859198
Molecular Characterization of Hemorrhagic Enteritis Virus (HEV) Obtained from Clinical Samples in Western Canada 2017-2018. PMID:32858877
Structural Comparison of Diverse HIV-1 Subtypes using Molecular Modelling and Docking Analyses of Integrase Inhibitors. PMID:32858802
Azolla ferns testify: seed plants and ferns share a common ancestor for leucoanthocyanidin reductase enzymes. PMID:32858769
New insights into the systematics of Bactrodesmium and its allies and introducing new genera, species and morphological patterns in the Pleurotheciales and Savoryellales (Sordariomycetes). PMID:32855744
Mollisiaceae: An overlooked lineage of diverse endophytes. PMID:32855742
Updating the taxonomy of Aspergillus in South Africa. PMID:32855741
Classification of Aspergillus, Penicillium, Talaromyces and related genera (Eurotiales): An overview of families, genera, subgenera, sections, series and species. PMID:32855739
Association of Body Mass Index with Fecal Microbial Diversity and Metabolites in the Northern Finland Birth Cohort. PMID:32855266
Molecular Evidence for Hybrid Origin and Phenotypic Variation of Rosa Section Chinenses. PMID:32854427
The Phylogeny of Class B Flavoprotein Monooxygenases and the Origin of the YUCCA Protein Family. PMID:32854417
Costus stripe mosaic virus, a tentative new member of the genus Potyvirus. PMID:32851430
Transcriptome of the Southern Muriqui Brachyteles arachnoides (Primates:Platyrrhini), a Critically Endangered New World Monkey: Evidence of Adaptive Evolution. PMID:32849820
The Genome Sequence of Alpine Megacarpaea delavayi Identifies Species-Specific Whole-Genome Duplication. PMID:32849811
The Complete Chloroplast Genome Sequences of 14 Curcuma Species: Insights Into Genome Evolution and Phylogenetic Relationships Within Zingiberales. PMID:32849804
A Global Survey of Carbohydrate Esterase Families 1 and 10 in Oomycetes. PMID:32849784
Evolutionary and Molecular Analysis of Complete Genome Sequences of Norovirus From Brazil: Emerging Recombinant Strain GII.P16/GII.4. PMID:32849456
Seasonal Niche Partitioning of Surface Temperate Open Ocean Prokaryotic Communities. PMID:32849378
Microbiota in Dung and Milk Differ Between Organic and Conventional Dairy Farms. PMID:32849375
Genetic Diversity Among Mycobacterium avium Subspecies Revealed by Analysis of Complete Genome Sequences. PMID:32849358
Diverse Microorganisms in Sediment and Groundwater Are Implicated in Extracellular Redox Processes Based on Genomic Analysis of Bioanode Communities. PMID:32849356
Novel Antimicrobial Cellulose Fleece Inhibits Growth of Human-Derived Biofilm-Forming Staphylococci During the SIRIUS19 Simulated Space Mission. PMID:32849336
Functionally uncoupled transcription-translation in Bacillus subtilis. PMID:32848247
Strain Structure and Dynamics Revealed by Targeted Deep Sequencing of the Honey Bee Gut Microbiome. PMID:32848005
Brassicaceous roots as an unexpected diversity hot-spot of helotialean endophytes. PMID:32844083
Genomic content of chemosensory receptors in two sister blister beetles facilitates characterization of chemosensory evolution. PMID:32842954
Baculovirus Expression and Functional Analysis of Vpa2 Proteins from Bacillus thuringiensis. PMID:32842608
A genetic barcode of SARS-CoV-2 for monitoring global distribution of different clades during the COVID-19 pandemic. PMID:32841689
Deep Mutational Scanning of SARS-CoV-2 Receptor Binding Domain Reveals Constraints on Folding and ACE2 Binding. PMID:32841599
Horizontal transmission and recombination maintain forever young bacterial symbiont genomes. PMID:32841233
Intracellular amorphous Ca-carbonate and magnetite biomineralization by a magnetotactic bacterium affiliated to the Alphaproteobacteria. PMID:32839547
An ancient tropical origin, dispersals via land bridges and Miocene diversification explain the subcosmopolitan disjunctions of the liverwort genus Lejeunea. PMID:32839508
Cross-Species Transmission of Deltacoronavirus and the Origin of Porcine Deltacoronavirus. PMID:32837537
SARS-CoV-2, an evolutionary perspective of interaction with human ACE2 reveals undiscovered amino acids necessary for complex stability. PMID:32837536
Genome evolution of SARS-CoV-2 and its virological characteristics. PMID:32834891
Ocrepeira klamt sp. n. (Araneae: Araneidae), a novel spider species from an Andean páramo in Colombia. PMID:32833963
Genome-wide characterization of the GRF family and their roles in response to salt stress in Gossypium. PMID:32831017
Sodium action potentials in placozoa: Insights into behavioral integration and evolution of nerveless animals. PMID:32828537
Characterization of Neoschoengastia gallinarum from subtropical China by rDNA and identification of two genotypes based on mitochondrial cox1. PMID:32827102
Neutralizing Antibodies Correlate with Protection from SARS-CoV-2 in Humans during a Fishery Vessel Outbreak with a High Attack Rate. PMID:32826322
Molecular Characterization of Newcastle Disease Viruses Isolated from Chickens in Tanzania and Ghana. PMID:32825492
Comparative Microbiome Study of Mummified Peach Fruits by Metagenomics and Metatranscriptomics. PMID:32824817
Whole Genome Sequencing of SARS-CoV-2: Adapting Illumina Protocols for Quick and Accurate Outbreak Investigation during a Pandemic. PMID:32824573
Molecular Characterisation of a Rare Reassortant Porcine-Like G5P[6] Rotavirus Strain Detected in an Unvaccinated Child in Kasama, Zambia. PMID:32824526
Mitochondrial HMG-Box Containing Proteins: From Biochemical Properties to the Roles in Human Diseases. PMID:32824374
Epidemiological Trends of Five Common Diarrhea-Associated Enteric Viruses Pre- and Post-Rotavirus Vaccine Introduction in Coastal Kenya. PMID:32824245
Characterization of the Complete Mitochondrial Genome of Drabescus ineffectus and Roxasellana stellata (Hemiptera: Cicadellidae: Deltocephalinae: Drabescini) and Their Phylogenetic Implications. PMID:32824108
Molecular Epidemiology Analysis of SARS-CoV-2 Strains Circulating in Romania during the First Months of the Pandemic. PMID:32823907
Phylogenetic Analyses of Glycosyl Hydrolase Family 6 Genes in Tunicates: Possible Horizontal Transfer. PMID:32823766
Dietary Supplementation with Sugar Beet Fructooligosaccharides and Garlic Residues Promotes Growth of Beneficial Bacteria and Increases Weight Gain in Neonatal Lambs. PMID:32823755
Identification of viruses infecting six plum cultivars in Korea by RNA-sequencing. PMID:32821540
The genus Clavariadelphus (Clavariadelphaceae, Gomphales) in China. PMID:32821216
Additions to Phaeosphaeriaceae (Pleosporales): Elongaticollum gen. nov., Ophiosphaerella taiwanensis sp. nov., Phaeosphaeriopsis beaucarneae sp. nov. and a new host record of Neosetophoma poaceicola from Musaceae. PMID:32821215
Evolutionary and structural analyses of SARS-CoV-2 D614G spike protein mutation now documented worldwide. PMID:32820179
Ovine congenital progressive muscular dystrophy (OCPMD) is a model of TNNT1 congenital myopathy. PMID:32819427
Fatal Measles Inclusion-Body Encephalitis in Adult with Untreated AIDS, France. PMID:32818389
Novel xylose transporter Cs4130 expands the sugar uptake repertoire in recombinant Saccharomyces cerevisiae strains at high xylose concentrations. PMID:32818042
Neutralizing antibodies correlate with protection from SARS-CoV-2 in humans during a fishery vessel outbreak with high attack rate. PMID:32817980
Genetic diversity and evolution of Hantaan virus in China and its neighbors. PMID:32817670
Genome-wide analyses reveal drivers of penguin diversification. PMID:32817535
Variation Among Biosynthetic Gene Clusters, Secondary Metabolite Profiles, and Cards of Virulence Across Aspergillus Species. PMID:32817009
Interplay of Disorder and Sequence Specificity in the Formation of Stable Dynein-Dynactin Complexes. PMID:32814057
Spider phylosymbiosis: divergence of widow spider species and their tissues' microbiomes. PMID:32811423
Genome-wide functional analysis of hot pepper immune receptors reveals an autonomous NLR clade in seed plants. PMID:32810286
The complete chloroplast genome of Papaver setigerum and comparative analyses in Papaveraceae. PMID:32808964
Impacts of Habitual Diets Intake on Gut Microbial Counts in Healthy Japanese Adults. PMID:32806561
Are Nonsynonymous Transversions Generally More Deleterious than Nonsynonymous Transitions? PMID:32805043
Rhizobium dioscoreae sp. nov., a plant growth-promoting bacterium isolated from yam (Dioscorea species). PMID:32804605
In silico functional and evolutionary analyses of rubber oxygenases (RoxA and RoxB). PMID:32802718
Advances in optical mapping for genomic research. PMID:32802277
Comparative Genomics Underlines Multiple Roles of Profftella, an Obligate Symbiont of Psyllids: Providing Toxins, Vitamins, and Carotenoids. PMID:32797185
A Thermostable mRNA Vaccine against COVID-19. PMID:32795413
Assessing the diversity and distribution of potential intermediate hosts snails for urogenital schistosomiasis: Bulinus spp. (Gastropoda: Planorbidae) of Lake Victoria. PMID:32795373
Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020. PMID:32794443
Analysis of Natural Selection of Immune Genes in Spinibarbus caldwelli by Transcriptome Sequencing. PMID:32793279
Coronaviruses in the Sea. PMID:32793180
Genomic Characteristics and Potential Metabolic Adaptations of Hadal Trench Roseobacter and Alteromonas Bacteria Based on Single-Cell Genomics Analyses. PMID:32793171
Acrogenospora (Acrogenosporaceae, Minutisphaerales) Appears to Be a Very Diverse Genus. PMID:32793142
Molecular evolution of coxsackievirus A24v in Cuba over 23-years, 1986-2009. PMID:32792520
Alterations in Intestinal Microbiota of Children With Celiac Disease at the Time of Diagnosis and on a Gluten-free Diet. PMID:32791131
Amoeba Genome Reveals Dominant Host Contribution to Plastid Endosymbiosis. PMID:32790833
Diversity and structure of prokaryotic communities within organic and conventional farming systems in central highlands of Kenya. PMID:32790770
Ecological factors associated with persistent circulation of multiple highly pathogenic avian influenza viruses among poultry farms in Taiwan during 2015-17. PMID:32790744
Lichens and associated fungi from Glacier Bay National Park, Alaska. PMID:32788812
Discovery of EMRE in fungi resolves the true evolutionary history of the mitochondrial calcium uniporter. PMID:32788582
Molecular analysis of polymorphic species of the genus Marshallagia (Nematoda: Ostertagiinae). PMID:32787940
Disentangling Sources of Gene Tree Discordance in Phylogenomic Data Sets: Testing Ancient Hybridizations in Amaranthaceae s.l. PMID:32785686
Supersized Ribosomal RNA Expansion Segments in Asgard Archaea. PMID:32785681
Epidemiology and associated microbiota changes in deployed military personnel at high risk of traveler's diarrhea. PMID:32785284
Complete genome of a unicellular parasite (Antonospora locustae) and transcriptional interactions with its host locust. PMID:32783805
Herpes Simplex Virus Mistyping due to HSV-1 × HSV-2 Interspecies Recombination in Viral Gene Encoding Glycoprotein B. PMID:32781734
SARS-CoV-2 Consensus-Sequence and Matching Overlapping Peptides Design for COVID19 Immune Studies and Vaccine Development. PMID:32781672
An Unbiased Molecular Approach Using 3'-UTRs Resolves the Avian Family-Level Tree of Life. PMID:32781465
SHAMAN: a user-friendly website for metataxonomic analysis from raw reads to statistical analysis. PMID:32778056
Genomic epidemiology of Campylobacter jejuni associated with asymptomatic pediatric infection in the Peruvian Amazon. PMID:32776937
Ophiostomatoid fungi associated with mites phoretic on bark beetles in Qinghai, China. PMID:32775175
Treatment with the traditional Chinese medicine BuYang HuanWu Tang induces alterations that normalize the microbiome in ASD patients. PMID:32775128
Plastid genomics of Nicotiana (Solanaceae): insights into molecular evolution, positive selection and the origin of the maternal genome of Aztec tobacco (Nicotiana rustica). PMID:32775052
Overlooked but not forgotten: the first new extant species of Hawaiian land snail described in 60 years, Auriculella gagneorum sp. nov. (Achatinellidae, Auriculellinae). PMID:32774098
Recurrent sequence evolution after independent gene duplication. PMID:32770961
Distinct evolutionary trajectories of V1R clades across mouse species. PMID:32770934
Composition and activity of nitrifier communities in soil are unresponsive to elevated temperature and CO2, but strongly affected by drought. PMID:32770119
Genesis and spread of multiple reassortants during the 2016/2017 H5 avian influenza epidemic in Eurasia. PMID:32769208
Alterocin, an Antibiofilm Protein Secreted by Pseudoalteromonas sp. Strain 3J6. PMID:32769182
Transcriptional variation of sensory-related genes in natural populations of Aedes albopictus. PMID:32767966
Fagopyrum esculentum ssp. ancestrale-A Hybrid Species Between Diploid F. cymosum and F. esculentum. PMID:32765557
Australia: A Continent Without Native Powdery Mildews? The First Comprehensive Catalog Indicates Recent Introductions and Multiple Host Range Expansion Events, and Leads to the Re-discovery of Salmonomyces as a New Lineage of the Erysiphales. PMID:32765452
Genomic Surveillance of Yellow Fever Virus Epizootic in São Paulo, Brazil, 2016 - 2018. PMID:32764827
Hidden biodiversity in Neotropical streams: DNA barcoding uncovers high endemicity of freshwater macroinvertebrates at small spatial scales. PMID:32764752
Transcriptomic Analysis of Four Cerianthid (Cnidaria, Ceriantharia) Venoms. PMID:32764303
Proteotranscriptomic Insights into the Venom Composition of the Wolf Spider Lycosa tarantula. PMID:32764230
Comparative Proteomics of Octocoral and Scleractinian Skeletomes and the Evolution of Coral Calcification. PMID:32761183
Optimizing the widely used nuclear protein-coding gene primers in beetle phylogenies and their application in the genus Sasajiscymnus Vandenberg (Coleoptera: Coccinellidae). PMID:32760560
Diet of a rare herbivore based on DNA metabarcoding of feces: Selection, seasonality, and survival. PMID:32760553
Plastome phylogenomics and phylogenetic diversity of endangered and threatened grassland species (Poaceae) in a North American tallgrass prairie. PMID:32760551
Evaluating the effect of reference genome divergence on the analysis of empirical RADseq datasets. PMID:32760550
Journey to the West: Trans-Pacific Historical Biogeography of Fringehead Blennies in the Genus Neoclinus (Teleostei: Blenniiformes). PMID:32760455
Effects of Zinc Pollution and Compost Amendment on the Root Microbiome of a Metal Tolerant Poplar Clone. PMID:32760392
Genomic Variation and Arsenic Tolerance Emerged as Niche Specific Adaptations by Different Exiguobacterium Strains Isolated From the Extreme Salar de Huasco Environment in Chilean - Altiplano. PMID:32760381
Fasciola hepatica serine protease inhibitor family (serpins): Purposely crafted for regulating host proteases. PMID:32760059
Chikungunya virus Detection in Aedes aegypti and Culex quinquefasciatus during an Outbreak in the Amazon Region. PMID:32759878
Partitiviruses Infecting Drosophila melanogaster and Aedes aegypti Exhibit Efficient Biparental Vertical Transmission. PMID:32759315
Differential neuropeptide modulation of premotor and motor neurons in the lobster cardiac ganglion. PMID:32755328
Museomics Unveil the Phylogeny and Biogeography of the Neglected Juan Fernandez Archipelago Megalachne and Podophorus Endemic Grasses and Their Connection With Relict Pampean-Ventanian Fescues. PMID:32754167
Investigation on the Evolution of Shiga Toxin-Converting Phages Based on Whole Genome Sequencing. PMID:32754128
Genomic analyses of a livestock pest, the New World screwworm, find potential targets for genetic control programs. PMID:32753684
Bactopia: a Flexible Pipeline for Complete Analysis of Bacterial Genomes. PMID:32753501
BKTyper: Free Online Tool for Polyoma BK Virus VP1 and NCCR Typing. PMID:32751885
Phylogeny and Comparative Analysis of Chinese Chamaesium Species Revealed by the Complete Plastid Genome. PMID:32751647
Effects of Thymol Supplementation on Goat Rumen Fermentation and Rumen Microbiota In Vitro. PMID:32751619
Fungal Community in Antarctic Soil Along the Retreating Collins Glacier (Fildes Peninsula, King George Island). PMID:32751125
Epidemic history and baseline resistance to NS5A-specific direct acting drugs of hepatitis C virus in Spain. PMID:32747734
Comparison of eight complete chloroplast genomes of the endangered Aquilaria tree species (Thymelaeaceae) and their phylogenetic relationships. PMID:32747724
Circumpolar diversification of the Ixodes uriae tick virome. PMID:32745135
Genomic and transcriptomic evidence for descent from Plasmodium and loss of blood schizogony in Hepatocystis parasites from naturally infected red colobus monkeys. PMID:32745123
Comparative gut transcriptome analysis of Diatraea saccharalis in response to the dietary source. PMID:32745084
Plastome comparative genomics in maples resolves the infrageneric backbone relationships. PMID:32742784
Evolution of pogo, a separate superfamily of IS630-Tc1-mariner transposons, revealing recurrent domestication events in vertebrates. PMID:32742312
Recent hybrid speciation at the origin of the narrow endemic Pulmonaria helvetica. PMID:32738145
Unravelling the diversity of magnetotactic bacteria through analysis of open genomic databases. PMID:32737307
The utility of DNA barcodes to confirm the identification of palm collections in botanical gardens. PMID:32735584
A human MMTV-like betaretrovirus linked to breast cancer has been present in humans at least since the copper age. PMID:32735554
Six new species of Begonia from Guangxi, China. PMID:32734318
Novel species of Huntiella from naturally-occurring forest trees in Greece and South Africa. PMID:32733148
Nested whole-genome duplications coincide with diversification and high morphological disparity in Brassicaceae. PMID:32732942
Ancient Evolutionary Origin of Intrinsically Disordered Cancer Risk Regions. PMID:32731489
Methylobacterium, a major component of the culturable bacterial endophyte community of wild Brassica seed. PMID:32728495
Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors. PMID:32728126
Genomic-based taxonomic classification of the family Erythrobacteraceae. PMID:32726199
A murine model of pediatric inflammatory bowel disease causes microbiota-gut-brain axis deficits in adulthood. PMID:32726162
Patterns of host-parasite associations in tropical lice and their passerine hosts in Cameroon. PMID:32724529
Haplotype networks of SARS-CoV-2 infections in the Diamond Princess cruise ship outbreak. PMID:32723824
A survey of RNA viruses in mosquitoes from Mozambique reveals novel genetic lineages of flaviviruses and phenuiviruses, as well as frequent flavivirus-like viral DNA forms in Mansonia. PMID:32723369
Description of Deladenus brevis n. sp. (Sphaerularioidea: Neotylenchidae) from Iran: a morphological and molecular phylogenetic study. PMID:32722902
First report of Meloidogyne javanica infecting Zinnia elegans in Ceará State, Brazil. PMID:32722900
What Drives the Diversity of the Most Abundant Terrestrial Cercozoan Family (Rhogostomidae, Cercozoa, Rhizaria)? PMID:32722603
Effect of Choline Forms and Gut Microbiota Composition on Trimethylamine-N-Oxide Response in Healthy Men. PMID:32722424
Molecular Tracing of SARS-CoV-2 in Italy in the First Three Months of the Epidemic. PMID:32722343
Vaginal Microbiota Changes During Estrous Cycle in Dairy Heifers. PMID:32719814
The Genome of Microthlaspi erraticum (Brassicaceae) Provides Insights Into the Adaptation to Highly Calcareous Soils. PMID:32719698
High Diversity of Cytospora Associated With Canker and Dieback of Rosaceae in China, With 10 New Species Described. PMID:32719689
First Genome Sequences of Two Multidrug-Resistant Candida haemulonii var. vulnera Isolates From Pediatric Patients With Candidemia. PMID:32719671
Prospects of GWAS and predictive breeding for European winter wheat's grain protein content, grain starch content, and grain hardness. PMID:32719416
An evolutionary approach to systematic discovery of novel deubiquitinases, applied to Legionella. PMID:32719160
Whole-Genome-Based Survey for Polyphyletic Serovars of Salmonella enterica subsp. enterica Provides New Insights into Public Health Surveillance. PMID:32718035
Complete Chloroplast Genome Characterization of Oxalis Corniculata and Its Comparison with Related Species from Family Oxalidaceae. PMID:32717796
Evolution of viral quasispecies during SARS-CoV-2 infection. PMID:32717416
The evolution and functional divergence of the histone H2B family in plants. PMID:32716939
Distribution of trichodorid species in mainland China with description of Trichodorus hangzhouensis sp. nov. (Nematoda, Triplonchida). PMID:32714010
Egg parasitoids of Arboridia apicalis (Nawa, 1913) (Hemiptera, Cicadellidae), a leafhopper pest of grapevines in Japan, with description of a new species of Anagrus Haliday, 1833 (Hymenoptera, Mymaridae). PMID:32714008
Characterization and comparative analysis of the complete mitochondrial genome of Azygia hwangtsiyui Tsin, 1933 (Digenea), the first for a member of the family Azygiidae. PMID:32714004
Mutations Strengthened SARS-CoV-2 Infectivity. PMID:32710986
Culturable diversity of bacterial endophytes associated with medicinal plants of the Western Ghats, India. PMID:32710748
Polymorphism and Selection Pressure of SARS-CoV-2 Vaccine and Diagnostic Antigens: Implications for Immune Evasion and Serologic Diagnostic Performance. PMID:32709055
Aphid Transmission of Potyvirus: The Largest Plant-Infecting RNA Virus Genus. PMID:32708998
Genetic Diversity Among SARS-CoV2 Strains in South America may Impact Performance of Molecular Detection. PMID:32708840
Phytophthora Diversity in Pennsylvania Nurseries and Greenhouses Inferred from Clinical Samples Collected over Four Decades. PMID:32708553
Concurrent Infection of Skunk Adenovirus-1, Listeria monocytogenes, and a Regionally Specific Clade of Canine Distemper Virus in One Gray Fox (Urocyon cinereoargenteus) and Concurrent Listeriosis and Canine Distemper in a Second Gray Fox. PMID:32708148
Simple and Divided Leaves in Ferns: Exploring the Genetic Basis for Leaf Morphology Differences in the Genus Elaphoglossum (Dryopteridaceae). PMID:32707812
Computational predicting the human infectivity of H7N9 influenza viruses isolated from avian hosts. PMID:32706427
Mate discrimination among subspecies through a conserved olfactory pathway. PMID:32704542
Eukaryote-Conserved Methylarginine Is Absent in Diplomonads and Functionally Compensated in Giardia. PMID:32702104
Understanding leptospirosis eco-epidemiology by environmental DNA metabarcoding of irrigation water from two agro-ecological regions of Sri Lanka. PMID:32701971
Genetic characteristics and pathogenesis of H5 low pathogenic avian influenza viruses from wild birds and domestic ducks in South Korea. PMID:32699272
The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest. PMID:32698880
Positive Selection and Gene Expression Analyses from Salivary Glands Reveal Discrete Adaptations within the Ecologically Diverse Bat Family Phyllostomidae. PMID:32697843
Airborne bacterial emission fluxes from manure-fertilized agricultural soil. PMID:32697046
A Hopeful Sea-Monster: A Very Large Homologous Recombination Event Impacting the Core Genome of the Marine Pathogen Vibrio anguillarum. PMID:32695083
Molecular phylogenetic analysis and morphological reassessments of thief ants identify a new potential case of biological invasions. PMID:32694527
Reference Genome for the Highly Transformable Setaria viridis ME034V. PMID:32694197
Discovery and Genomic Characterization of a 382-Nucleotide Deletion in ORF7b and ORF8 during the Early Evolution of SARS-CoV-2. PMID:32694143
Soil Bacterial Communities Exhibit Strong Biogeographic Patterns at Fine Taxonomic Resolution. PMID:32694128
Neural architecture and regeneration in the acoel Hofstenia miamia. PMID:32693729
Phylogenetic and phylodynamic analyses of SARS-CoV-2. PMID:32687861
Evidence for Strong Mutation Bias toward, and Selection against, U Content in SARS-CoV-2: Implications for Vaccine Design. PMID:32687176
Plastome Phylogenomic and Biogeographical Study on Thuja (Cupressaceae). PMID:32685531
Characterization and Comparative Analysis of Two Rheum Complete Chloroplast Genomes. PMID:32685515
Addressing incomplete lineage sorting and paralogy in the inference of uncertain salmonid phylogenetic relationships. PMID:32685284
The origins and genomic diversity of American Civil War Era smallpox vaccine strains. PMID:32684155
FluConvert and IniFlu: a suite of integrated software to identify novel signatures of emerging influenza viruses with increasing risk. PMID:32682392
The Identification and Evolutionary Trends of the Solute Carrier Superfamily in Arthropods. PMID:32681801
Evolutionary Genomics of Structural Variation in Asian Rice (Oryza sativa) Domestication. PMID:32681796
Expansions and contractions in gene families of independently-evolved blood-feeding insects. PMID:32680460
De Novo Assembly-Based Analysis of RPGR Exon ORF15 in an Indigenous African Cohort Overcomes Limitations of a Standard Next-Generation Sequencing (NGS) Data Analysis Pipeline. PMID:32679846
Rapid implementation of SARS-CoV-2 sequencing to investigate cases of health-care associated COVID-19: a prospective genomic surveillance study. PMID:32679081
Genomic Determination of Relative Risks for Clostridioides difficile Infection From Asymptomatic Carriage in Intensive Care Unit Patients. PMID:32676661
Distinct patterns of SARS-CoV-2 transmission in two nearby communities in Wisconsin, USA. PMID:32676620
Conserved Genomic Terminals of SARS-CoV-2 as Co-evolving Functional Elements and Potential Therapeutic Targets. PMID:32676601
Antibacterial Potential of Secondary Metabolites from Indonesian Marine Bacterial Symbionts. PMID:32676116
Validation of Variant Assembly Using HAPHPIPE with Next-Generation Sequence Data from Viruses. PMID:32674515
Ancient co-option of an amino acid ABC transporter locus in Pseudomonas syringae for host signal-dependent virulence gene regulation. PMID:32673374
The origin of domestication genes in goats. PMID:32671210
Functional Validation of Two Fungal Subfamilies in Carbohydrate Esterase Family 1 by Biochemical Characterization of Esterases From Uncharacterized Branches. PMID:32671051
Diverse Partitiviruses From the Phytopathogenic Fungus, Rosellinia necatrix. PMID:32670213
Bacterial Community Structure Dynamics in Meloidogyne incognita-Infected Roots and Its Role in Worm-Microbiome Interactions. PMID:32669465
Duplication of Symbiotic Lysin Motif Receptors Predates the Evolution of Nitrogen-Fixing Nodule Symbiosis. PMID:32669419
Characterization and Comparison of Two Complete Plastomes of Rosaceae Species (Potentilla dickinsii var. glabrata and Spiraea insularis) Endemic to Ulleung Island, Korea. PMID:32668601
The Aspergillus fumigatus transcription factor RglT is important for gliotoxin biosynthesis and self-protection, and virulence. PMID:32667960
Analysis of the diversity of the glycoside hydrolase family 130 in mammal gut microbiomes reveals a novel mannoside-phosphorylase function. PMID:32667876
A one-step, one-tube real-time RT-PCR based assay with an automated analysis for detection of SARS-CoV-2. PMID:32665985
The characterization of two novel neotropical primate papillomaviruses supports the ancient within-species diversity model. PMID:32665860
GBA3: a polymorphic pseudogene in humans that experienced repeated gene loss during mammalian evolution. PMID:32665690
Evolutionary Timeline and Genomic Plasticity Underlying the Lifestyle Diversity in Rhizobiales. PMID:32665328
Selection for Reducing Energy Cost of Protein Production Drives the GC Content and Amino Acid Composition Bias in Gene Transfer Agents. PMID:32665274
Insights into the dynamics between viruses and their hosts in a hot spring microbial mat. PMID:32661357
Evolutionary dynamics of the chloroplast genome sequences of six Colobanthus species. PMID:32661280
To gel or not to gel: differential expression of carrageenan-related genes between the gametophyte and tetasporophyte life cycle stages of the red alga Chondrus crispus. PMID:32661246
Is Phylotranscriptomics as Reliable as Phylogenomics? PMID:32658973
The evolutionary history of mariner elements in stalk-eyed flies reveals the horizontal transfer of transposons from insects into the genome of the cnidarian Hydra vulgaris. PMID:32658920
Microbial community analysis in the gills of abalones suggested possible dominance of epsilonproteobacterium in Haliotis gigantea. PMID:32655989
DNA Methylation and Demethylation Are Regulated by Functional DNA Methyltransferases and DnTET Enzymes in Diuraphis noxia. PMID:32655611
Identification and Expression Profiling of Chemosensory Genes in Hermetia illucens via a Transcriptomic Analysis. PMID:32655421
Phylogenomic Analysis of R2R3 MYB Transcription Factors in Sorghum and their Role in Conditioning Biofuel Syndrome. PMID:32655308
Speciation through chromosomal fusion and fission in Lepidoptera. PMID:32654638
Dual roles of yeast Rad51 N-terminal domain in repairing DNA double-strand breaks. PMID:32652040
Evolutionary and phylogenetic aspects of the chloroplast genome of Chaenomeles species. PMID:32651417
Biological rhythms in the deep-sea hydrothermal mussel Bathymodiolus azoricus. PMID:32651383
Mapping of Recognition Sites of Monoclonal Antibodies Responsible for the Inhibition of Pneumolysin Functional Activity. PMID:32650398
Development of a Multilocus Sequence Typing Scheme for Giardia intestinalis. PMID:32650382
Draft genome sequences of five Calonectria species from Eucalyptus plantations in China, Celoporthe dispersa, Sporothrix phasma and Alectoria sarmentosa. PMID:32647626
Genome-scale data resolve ancestral rock-inhabiting lifestyle in Dothideomycetes (Ascomycota). PMID:32647623
Phylogenetic study documents different speciation mechanisms within the Russula globispora lineage in boreal and arctic environments of the Northern Hemisphere. PMID:32647614
Biodiversity of Lecanosticta pine-needle blight pathogens suggests a Mesoamerican Centre of origin. PMID:32647611
A multigene phylogeny toward a new phylogenetic classification of Leotiomycetes. PMID:32647610
Structures of Human Antibodies Bound to SARS-CoV-2 Spike Reveal Common Epitopes and Recurrent Features of Antibodies. PMID:32645326
Schistosoma mansoni immunomodulatory molecule Sm16/SPO-1/SmSLP is a member of the trematode-specific helminth defence molecules (HDMs). PMID:32644998
Mutual antagonism between Hippo signaling and cyclin E drives intracellular pattern formation. PMID:32642758
Anaerobic metabolism of Foraminifera thriving below the seafloor. PMID:32641728
Interactions in multi-pattern Müllerian communities support origins of new patterns, false structures, imperfect resemblance and mimetic sexual dimorphism. PMID:32641709
Serpentoviruses: More than Respiratory Pathogens. PMID:32641481
Avian Metapneumovirus subtype B around Europe: a phylodynamic reconstruction. PMID:32641149
SLFinder, a pipeline for the novel identification of splice-leader sequences: a good enough solution for a complex problem. PMID:32640978
Phylogenetic and Timescale Analysis of Barmah Forest Virus as Inferred from Genome Sequence Analysis. PMID:32640629
Overview of Schistochilopsis (Hepaticae) in Pacific Asia with the Description Protochilopsis gen. nov. PMID:32640627
Targeting HIV-1 RNase H: N'-(2-Hydroxy-benzylidene)-3,4,5-Trihydroxybenzoylhydrazone as Selective Inhibitor Active against NNRTIs-Resistant Variants. PMID:32640577
Epidemiology and Genotypic Diversity of Eurasian Avian-Like H1N1 Swine Influenza Viruses in China. PMID:32638231
TreeSAPP: the Tree-based Sensitive and Accurate Phylogenetic Profiler. PMID:32637989
Hidden genomic diversity of SARS-CoV-2: implications for qRT-PCR diagnostics and transmission. PMID:32637955
Structural and Functional Analysis of the D614G SARS-CoV-2 Spike Protein Variant. PMID:32637944
A kinase bioscavenger provides antibiotic resistance by extremely tight substrate binding. PMID:32637600
Chloroplast Phylogenomics Reveals the Intercontinental Biogeographic History of the Liquorice Genus (Leguminosae: Glycyrrhiza). PMID:32636856
Insights Into Chloroplast Genome Evolution Across Opuntioideae (Cactaceae) Reveals Robust Yet Sometimes Conflicting Phylogenetic Topologies. PMID:32636853
The Podovirus ϕ80-18 Targets the Pathogenic American Biotype 1B Strains of Yersinia enterocolitica. PMID:32636826
Continent-Scale Sampling Reveals Fine-Scale Turnover in a Beneficial Bug Symbiont. PMID:32636818
The Intrinsically Disordered Protein CARP9 Bridges HYL1 to AGO1 in the Nucleus to Promote MicroRNA Activity. PMID:32636339
Abundant and Diverse RNA Viruses in Insects Revealed by RNA-Seq Analysis: Ecological and Evolutionary Implications. PMID:32636338
Population Analysis and Evolution of Saccharomyces cerevisiae Mitogenomes. PMID:32635509
Genomic Comparison of Insect Gut Symbionts from Divergent Burkholderia Subclades. PMID:32635398
Molecular phylogeny and distribution of dengue virus serotypes circulating in Nepal in 2017. PMID:32634137
Genomic Characteristics of a Novel Species of Ammonia-Oxidizing Archaea from the Jiulong River Estuary. PMID:32631866
Exploring neighborhoods in large metagenome assembly graphs using spacegraphcats reveals hidden sequence diversity. PMID:32631445
How being synanthropic affects the gut bacteriome and mycobiome: comparison of two mouse species with contrasting ecologies. PMID:32631223
RNA-Seq of three free-living flatworm species suggests rapid evolution of reproduction-related genes. PMID:32631219
Identifying Leafhopper Targets for Controlling Aster Yellows in Carrots and Celery. PMID:32630777
Recombination Analysis of Non-Poliovirus Members of the Enterovirus C Species; Restriction of Recombination Events to Members of the Same 3DPol Cluster. PMID:32629843
Adaptation Evolution and Phylogenetic Analyses of Species in Chinese Allium Section Pallasia and Related Species Based on Complete Chloroplast Genome Sequences. PMID:32626767
Cross-Species Annotation of Expressed Genes and Detection of Different Functional Gene Modules Between 10 Cold- and 10 Hot-Propertied Chinese Herbal Medicines. PMID:32625232
Degradative Capacity of Two Strains of Rhodonia placenta: From Phenotype to Genotype. PMID:32625194
Megaevolutionary dynamics and the timing of evolutionary innovation in reptiles. PMID:32620878
Ophiostomatoid fungi associated with Ips subelongatus, including eight new species from northeastern China. PMID:32617255
Reclassification of Pterulaceae Corner (Basidiomycota: Agaricales) introducing the ant-associated genus Myrmecopterula gen. nov., Phaeopterula Henn. and the corticioid Radulomycetaceae fam. nov. PMID:32617254
The identification of sulfide oxidation as a potential metabolism driving primary production on late Noachian Mars. PMID:32616785
Genome Sequencing of a Severe Acute Respiratory Syndrome Coronavirus 2 Isolate Obtained from a South African Patient with Coronavirus Disease 2019. PMID:32616644
Main Routes of Entry and Genomic Diversity of SARS-CoV-2, Uganda. PMID:32614767
A new species of frog (Terrarana, Strabomantidae, Phrynopus) from the Peruvian Andean grasslands. PMID:32612895
The Complete Plastomes of Five Hemiparasitic Plants (Osyris wightiana, Pyrularia edulis, Santalum album, Viscum liquidambaricolum, and V. ovalifolium): Comparative and Evolutionary Analyses Within Santalales. PMID:32612639
Rapid and Sensitive Direct Detection and Identification of Poliovirus from Stool and Environmental Surveillance Samples by Use of Nanopore Sequencing. PMID:32611795
Limited Cross-Protection Provided by Prior Infection Contributes to High Prevalence of Influenza D Viruses in Cattle. PMID:32611750
Phosphoregulation of a Conserved Herpesvirus Tegument Protein by a Virally Encoded Protein Kinase in Viral Pathogenicity and Potential Linkage between Its Evolution and Viral Phylogeny. PMID:32611749
Multimodal Approach to Assessment of Fecal Microbiota Donors based on Three Complementary Methods. PMID:32610522
Molecular analysis of Spiophanes bombyx complex (Annelida: Spionidae) with description of a new species. PMID:32609771
UPΦ phages, a new group of filamentous phages found in several members of Enterobacteriales. PMID:32607251
High dispersal capacity and biogeographic breaks shape the genetic diversity of a globally distributed reef-dwelling calcifier. PMID:32607205
A comparative plastomics approach reveals available molecular markers for the phylogeographic study of Dendrobium huoshanense, an endangered orchid with extremely small populations. PMID:32607156
Two new species of Ophiostomatales (Sordariomycetes) associated with the bark beetle Dryocoetes alni from Poland. PMID:32607057
A novel Borrelia species, intermediate between Lyme disease and relapsing fever groups, in neotropical passerine-associated ticks. PMID:32606328
Lateral Gene Transfer Drives Metabolic Flexibility in the Anaerobic Methane-Oxidizing Archaeal Family Methanoperedenaceae. PMID:32605988
Divergent Evolution of PcF/SCR74 Effectors in Oomycetes Is Associated with Distinct Recognition Patterns in Solanaceous Plants. PMID:32605983
The evolution of the Puf superfamily of proteins across the tree of eukaryotes. PMID:32605621
Microbial succession during the transition from active to inactive stages of deep-sea hydrothermal vent sulfide chimneys. PMID:32605604
Genome assembly of the basket willow, Salix viminalis, reveals earliest stages of sex chromosome expansion. PMID:32605573
Betacoronavirus Genomes: How Genomic Information has been Used to Deal with Past Outbreaks and the COVID-19 Pandemic. PMID:32604724
Coevolution in Hybrid Genomes: Nuclear-Encoded Rubisco Small Subunits and Their Plastid-Targeting Translocons Accompanying Sequential Allopolyploidy Events in Triticum. PMID:32602899
Multiple Invasions of Visitor, a DD41D Family of Tc1/mariner Transposons, throughout the Evolution of Vertebrates. PMID:32602886
HA stabilization promotes replication and transmission of swine H1N1 gamma influenza viruses in ferrets. PMID:32602461
Declining genetic diversity of European honeybees along the twentieth century. PMID:32601293
Structural variation of the malaria-associated human glycophorin A-B-E region. PMID:32600246
Nosocomial outbreak of the Middle East Respiratory Syndrome coronavirus: A phylogenetic, epidemiological, clinical and infection control analysis. PMID:32599173
Analysis of p67 allelic sequences reveals a subtype of allele type 1 unique to buffalo-derived Theileria parva parasites from southern Africa. PMID:32598384
Evolutionary History of the Globin Gene Family in Annelids. PMID:32597988
Matrix-assisted laser desorption/ionization time-of-flight MS for the accurate identification of Burkholderia cepacia complex and Burkholderia gladioli in the clinical microbiology laboratory. PMID:32597748
Homodimerization of a glycoside hydrolase family GH1 β-glucosidase suggests distinct activity of enzyme different states. PMID:32597558
Sars-CoV-2 Envelope and Membrane Proteins: Structural Differences Linked to Virus Characteristics? PMID:32596311
Determining the Genetic Characteristics of Resistance and Virulence of the "Epidermidis Cluster Group" Through Pan-Genome Analysis. PMID:32596166
Meta-Analysis and Evaluation by Insect-Mediated Baiting Reveal Different Patterns of Hypocrealean Entomopathogenic Fungi in the Soils From Two Regions of China. PMID:32595616
One species, two developmental modes: a case of geographic poecilogony in marine gastropods. PMID:32591013
Genomic nucleotide-based distance analysis for delimiting old world monkey derived herpes simplex virus species. PMID:32590937
Taxonomic scheme of the order Chaetophorales (Chlorophyceae, Chlorophyta) based on chloroplast genomes. PMID:32590931
Molecular identification of Cryptococcus gattii from cerebrospinal fluid using single-cell sequencing: A case study. PMID:32590007
Only a Single Taxonomically Restricted Gene Family in the Drosophila melanogaster Subgroup Can Be Identified with High Confidence. PMID:32589737
Deep mutational scanning of SARS-CoV-2 receptor binding domain reveals constraints on folding and ACE2 binding. PMID:32587970
Plastid genomes of the North American Rhus integrifolia-ovata complex and phylogenomic implications of inverted repeat structural evolution in Rhus L. PMID:32587799
Genome Sequence of SARS-CoV-2 Isolate Cali-01, from Colombia, Obtained Using Oxford Nanopore MinION Sequencing. PMID:32586872
Interspecific analysis of diurnal gene regulation in panicoid grasses identifies known and novel regulatory motifs. PMID:32586356
------Widespread conservation and lineage-specific diversification of genome-wide DNA methylation patterns across arthropods. PMID:32584820
SARS-CoV-2 Genome Analysis of Japanese Travelers in Nile River Cruise. PMID:32582136
Metatranscriptomic Analysis of Virus Diversity in Urban Wild Birds with Paretic Disease. PMID:32581107
Epstein-Barr Virus Genomes Reveal Population Structure and Type 1 Association with Endemic Burkitt Lymphoma. PMID:32581102
Genomic Surveillance Enables Suitability Assessment of Salmonella Gene Targets Used for Culture-Independent Diagnostic Testing. PMID:32580953
An exploration of the complex biogeographical history of the Neotropical banner-wing damselflies (Odonata: Polythoridae). PMID:32580705
A Differential Metabarcoding Approach to Describe Taxonomy Profiles of Bacteria and Archaea in the Saltern of Margherita di Savoia (Italy). PMID:32580393
Virome of crab-eating (Cerdocyon thous) and pampas foxes (Lycalopex gymnocercus) from southern Brazil and Uruguay. PMID:32580027
Leaf reflectance spectra capture the evolutionary history of seed plants. PMID:32579721
Natural selection in the evolution of SARS-CoV-2 in bats, not humans, created a highly capable human pathogen. PMID:32577659
Structures of human antibodies bound to SARS-CoV-2 spike reveal common epitopes and recurrent features of antibodies. PMID:32577645
The role of Rhipicephalus sanguineus ticks parasitizing dogs in the spread of tick-borne rickettsial pathogens in the city of Sevastopol. PMID:32577290
Symbiotic bacterial communities in rainforest fungus-farming ants: evidence for species and colony specificity. PMID:32576863
Genotypic and Phenotypic Diversity of Staphylococcus aureus Isolates from Cystic Fibrosis Patient Lung Infections and Their Interactions with Pseudomonas aeruginosa. PMID:32576671
A Unique Isolation of a Lytic Bacteriophage Infected Bacillus anthracis Isolate from Pafuri, South Africa. PMID:32575780
A secreted LysM effector protects fungal hyphae through chitin-dependent homodimer polymerization. PMID:32574207
Draft genomic sequence of Armillaria gallica 012m: insights into its symbiotic relationship with Gastrodia elata. PMID:32572836
Comparative chloroplast genome analysis of Artemisia (Asteraceae) in East Asia: insights into evolutionary divergence and phylogenomic implications. PMID:32571207
A divergent cyclin/cyclin-dependent kinase complex controls the atypical replication of a malaria parasite during gametogony and transmission. PMID:32568069
Transcriptome data of temporal and cingulate cortex in the Rett syndrome brain. PMID:32561870
The rise of diversity in metabolic platforms across the Candidate Phyla Radiation. PMID:32560683
Characterization and Analysis of the Full-Length Transcriptomes of Multiple Organs in Pseudotaxus chienii (W.C.Cheng) W.C.Cheng. PMID:32560294
Wolbachia (Rickettsiales: Alphaproteobacteria) Infection in the Leafhopper Vector of Sugarcane White Leaf Disease. PMID:32559297
Molecular relationships of Campomanesia xanthocarpa within Myrtaceae based on the complete plastome sequence and on the plastid ycf2 gene. PMID:32555941
Complete genome analysis and characterization of neurotropic dengue virus 2 cosmopolitan genotype isolated from the cerebrospinal fluid of encephalitis patients. PMID:32555732
Draft genome of the European medicinal leech Hirudo medicinalis (Annelida, Clitellata, Hirudiniformes) with emphasis on anticoagulants. PMID:32555498
Sex in Symbiodiniaceae dinoflagellates: genomic evidence for independent loss of the canonical synaptonemal complex. PMID:32555361
Differential Responses of a Coastal Prokaryotic Community to Phytoplanktonic Organic Matter Derived from Cellular Components and Exudates. PMID:32554942
Measles virus and rinderpest virus divergence dated to the sixth century BCE. PMID:32554594
SARS-CoV-2 infection in farmed minks, the Netherlands, April and May 2020. PMID:32553059
Evolutionary analysis of exogenous and integrated HHV-6A/HHV-6B populations. PMID:32551136
A taxonomic reassessment of the genus Balsamia from China. PMID:32550792
Distoseptispora bambusae sp. nov. (Distoseptisporaceae) on bamboo from China and Thailand. PMID:32547305
Alterations in the Gut Microbiome in the Progression of Cirrhosis to Hepatocellular Carcinoma. PMID:32546668
The Complete Chloroplast Genome Sequencing and Comparative Analysis of Reed Canary Grass (Phalaris arundinacea) and Hardinggrass (P. aquatica). PMID:32545897
Signatures of TRI5, TRI8 and TRI11 Protein Sequences of Fusarium incarnatum-equiseti Species Complex (FIESC) Indicate Differential Trichothecene Analogue Production. PMID:32545314
Year‑Round Influenza A Virus Surveillance in Mallards (Anas platyrhynchos) Reveals Genetic Persistence During the Under‑Sampled Spring Season. PMID:32545281
A Novel Microbialite-Associated Phototrophic Chloroflexi Lineage Exhibiting a Quasi-Clonal Pattern along Depth. PMID:32544224
Nucleosome-CHD4 chromatin remodeler structure maps human disease mutations. PMID:32543371
Structure of complete Pol II-DSIF-PAF-SPT6 transcription complex reveals RTF1 allosteric activation. PMID:32541898
Full-length transcript sequencing accelerates the transcriptome research of Gymnocypris namensis, an iconic fish of the Tibetan Plateau. PMID:32541658
The GTPase-activating protein p120RasGAP has an evolutionarily conserved "FLVR-unique" SH2 domain. PMID:32540970
Shifting evolutionary sands: transcriptome characterization of the Aptostichus atomarius species complex. PMID:32539685
Rampant Nuclear Transfer and Substitutions of Plastid Genes in Passiflora. PMID:32539116
Comparative Analysis of Genomic Repeat Content in Gomphocerine Grasshoppers Reveals Expansion of Satellite DNA and Helitrons in Species with Unusually Large Genomes. PMID:32539114
Isolation and transcriptomic analysis of Anopheles gambiae oenocytes enables the delineation of hydrocarbon biosynthesis. PMID:32538778
Ancient genetic divergence in bumblebee catfish of the genus Pseudopimelodus (Pseudopimelodidae: Siluriformes) from northwestern South America. PMID:32537262
Fatty acid bioconversion in harpacticoid copepods in a changing environment: a transcriptomic approach. PMID:32536309
Fruit ripening in Lycium barbarum and Lycium ruthenicum is associated with distinct gene expression patterns. PMID:32533890
Enhanced Triacylglycerol Metabolism Contributes to Efficient Oil Utilization and High-Level Production of Salinomycin in Streptomyces albus ZD11. PMID:32532869
Complete chloroplast genome sequence of Barleria prionitis, comparative chloroplast genomics and phylogenetic relationships among Acanthoideae. PMID:32532210
Conserved white-rot enzymatic mechanism for wood decay in the Basidiomycota genus Pycnoporus. PMID:32531032
Dissecting the genome of star fruit (Averrhoa carambola L.). PMID:32528706
Hybrid de novo genome assembly of red gromwell (Lithospermum erythrorhizon) reveals evolutionary insight into shikonin biosynthesis. PMID:32528694
Characterization of Burkholderia cepacia Complex Core Genome and the Underlying Recombination and Positive Selection. PMID:32528528
Genome Assembly and Annotation of Soft-Shelled Adlay (Coix lacryma-jobi Variety ma-yuen), a Cereal and Medicinal Crop in the Poaceae Family. PMID:32528499
Genome-wide analysis of the Saccharina japonica sulfotransferase genes and their transcriptional profiles during whole developmental periods and under abiotic stresses. PMID:32527219
Recovery of Vaginal Microbiota After Standard Treatment for Bacterial Vaginosis Infection: An Observational Study. PMID:32527048
Duplication and divergence of the retrovirus restriction gene Fv1 in Mus caroli allows protection from multiple retroviruses. PMID:32525879
Origin and evolution of dengue virus type 2 causing outbreaks in Kenya: Evidence of circulation of two cosmopolitan genotype lineages. PMID:32523778
Replication of Influenza D Viruses of Bovine and Swine Origin in Ovine Respiratory Explants and Their Attachment to the Respiratory Tract of Bovine, Sheep, Goat, Horse, and Swine. PMID:32523585
Phytopathogenic Rhodococcus Have Diverse Plasmids With Few Conserved Virulence Functions. PMID:32523572
Whole Genome Sequencing of Hepatitis A Virus Using a PCR-Free Single-Molecule Nanopore Sequencing Approach. PMID:32523561
Patterns and Rates of Plastid rps12 Gene Evolution Inferred in a Phylogenetic Context using Plastomic Data of Ferns. PMID:32523061
An iron (II) dependent oxygenase performs the last missing step of plant lysine catabolism. PMID:32523014
Genomic determinants of pathogenicity in SARS-CoV-2 and other human coronaviruses. PMID:32522874
Aerosol Transmission from Infected Swine to Ferrets of an H3N2 Virus Collected from an Agricultural Fair and Associated with Human Variant Infections. PMID:32522849
Lateral Gene Transfer Acts As an Evolutionary Shortcut to Efficient C4 Biochemistry. PMID:32521019
Evaluating Eucalyptus leaf colonization by Brasilonema octagenarum (Cyanobacteria, Scytonemataceae) using in planta experiments and genomics. PMID:32518725
Can Mitogenomes of the Northern Wheatear (Oenanthe oenanthe) Reconstruct Its Phylogeography and Reveal the Origin of Migrant Birds? PMID:32518318
Chytrid rhizoid morphogenesis resembles hyphal development in multicellular fungi and is adaptive to resource availability. PMID:32517626
MYB Superfamily in Brassica napus: Evidence for Hormone-Mediated Expression Profiles, Large Expansion, and Functions in Root Hair Development. PMID:32517318
A new method of metabarcoding Microsporidia and their hosts reveals high levels of microsporidian infections in mosquitoes (Culicidae). PMID:32516485
Whole genome resequencing of four Italian sweet pepper landraces provides insights on sequence variation in genes of agronomic value. PMID:32514106
Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations. PMID:32513234
Complete plastome sequencing resolves taxonomic relationships among species of Calligonum L. (Polygonaceae) in China. PMID:32513105
A Divergent Articulavirus in an Australian Gecko Identified Using Meta-Transcriptomics and Protein Structure Comparisons. PMID:32512909
Hidden in Plain Sight: Comprehensive Molecular Phylogeny of Keroplatidae and Lygistorrhinidae (Diptera) Reveals Parallel Evolution and Leads to a Revised Family Classification. PMID:32512775
Cryptic transmission of SARS-CoV-2 in Washington State. PMID:32511596
Sequencing identifies multiple early introductions of SARS-CoV-2 to the New York City Region. PMID:32511587
Shotgun Transcriptome and Isothermal Profiling of SARS-CoV-2 Infection Reveals Unique Host Responses, Viral Diversification, and Drug Interactions. PMID:32511352
Comparative ACE2 variation and primate COVID-19 risk. PMID:32511330
Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes. PMID:32511309
Recombination and lineage-specific mutations linked to the emergence of SARS-CoV-2. PMID:32511304
Genomic determinants of pathogenicity in SARS-CoV-2 and other human coronaviruses. PMID:32511301
Genetic and functional diversification of chemosensory pathway receptors in mosquito-borne filarial nematodes. PMID:32511224
Insights on early mutational events in SARS-CoV-2 virus reveal founder effects across geographical regions. PMID:32509472
A new species of freshwater crab of the genus Qianguimon Huang, 2018 (Decapoda: Brachyura: Potamidae) from Guangxi, Southern China. PMID:32509462
Comparative analysis of four Zantedeschia chloroplast genomes: expansion and contraction of the IR region, phylogenetic analyses and SSR genetic diversity assessment. PMID:32509453
The Phylogenetic Implications of the Mitochondrial Genomes of Macropsis notata and Oncopsis nigrofasciata. PMID:32508875
Genomic Sequencing and Analysis of Eight Camel-Derived Middle East Respiratory Syndrome Coronavirus (MERS-CoV) Isolates in Saudi Arabia. PMID:32503352
Pathogenic Allodiploid Hybrids of Aspergillus Fungi. PMID:32502407
Real-time dynamics of Plasmodium NDC80 reveals unusual modes of chromosome segregation during parasite proliferation. PMID:32501284
Highly active rubiscos discovered by systematic interrogation of natural sequence diversity. PMID:32500941
A Novel Retrovirus (Gunnison's Prairie Dog Retrovirus) Associated With Thymic Lymphoma in Gunnison's Prairie Dogs in Colorado, USA. PMID:32498297
Comment on "Genetic variants and source of introduction of SARS-CoV-2 in South America". PMID:32497295
Characterizing the microbiome of ectoparasitic louse flies feeding on migratory raptors. PMID:32497084
Freezing and water availability structure the evolutionary diversity of trees across the Americas. PMID:32494713
Metagenomic growth rate inferences of strains in situ. PMID:32494636
An integrative phylogenomic approach to elucidate the evolutionary history and divergence times of Neuropterida (Insecta: Holometabola). PMID:32493355
The nuclear and mitochondrial genomes of Frieseomelitta varia - a highly eusocial stingless bee (Meliponini) with a permanently sterile worker caste. PMID:32493270
Regional Transmission and Reassortment of 2.3.4.4b Highly Pathogenic Avian Influenza (HPAI) Viruses in Bulgarian Poultry 2017/18. PMID:32492965
Mapping of HIV-1C Transmission Networks Reveals Extensive Spread of Viral Lineages Across Villages in Botswana Treatment-as-Prevention Trial. PMID:32492145
Position specificity in the genus Coreomyces (Laboulbeniomycetes, Ascomycota). PMID:32490367
Postia caesia complex (Polyporales, Basidiomycota) in temperate Northern Hemisphere. PMID:32490363
Phylogeny and taxonomy of the genus Tubakia s. lat. PMID:32490362
Leishmania Encodes a Bacterium-like 2,4-Dienoyl-Coenzyme A Reductase That Is Required for Fatty Acid β-Oxidation and Intracellular Parasite Survival. PMID:32487758
Phylogenomics indicates Amazonia as the major source of Neotropical swarm-founding social wasp diversity. PMID:32486978
Identification and Functional Analysis of Temperate Siphoviridae Bacteriophages of Acinetobacter baumannii. PMID:32486497
Porcine epidemic diarrhea virus: Viral RNA detection and quantification using a validated one-step real time RT-PCR. PMID:32485176
The Origin of the Legumes is a Complex Paleopolyploid Phylogenomic Tangle Closely Associated with the Cretaceous-Paleogene (K-Pg) Mass Extinction Event. PMID:32483631
Mitochondrial genetic variation reveals phylogeographic structure and cryptic diversity in Trioza erytreae. PMID:32483282
Papuan mitochondrial genomes and the settlement of Sahul. PMID:32483274
An evolutionary path to altered cofactor specificity in a metalloenzyme. PMID:32483131
Effect of a Multispecies Probiotic on Intestinal and Skin Colonization by Multidrug-Resistant Gram-Negative Bacteria in Patients in a Long-Term Care Facility: A Pilot Study. PMID:32481668
What Can the Bacterial Community of Atta sexdens (Linnaeus, 1758) Tell Us about the Habitats in Which This Ant Species Evolves? PMID:32481532
Crystal structure of β-L-arabinobiosidase belonging to glycoside hydrolase family 121. PMID:32479540
Retrocopying expands the functional repertoire of APOBEC3 antiviral proteins in primates. PMID:32479260
Detection of Low Pathogenic Avian Influenza Virus Subtype H10N7 in Poultry and Environmental Water Samples During a Clinical Outbreak in Commercial Free-Range Layers, Netherlands 2017. PMID:32478107
A two-tier bioinformatic pipeline to develop probes for target capture of nuclear loci with applications in Melastomataceae. PMID:32477841
Subtypes of Neurohypophyseal Nonapeptide Receptors and Their Functions in Rat Kidneys. PMID:32477601
Genomic and Phenotypic Heterogeneity of Clinical Isolates of the Human Pathogens Aspergillus fumigatus, Aspergillus lentulus, and Aspergillus fumigatiaffinis. PMID:32477406
Microbial Ecology of Methanotrophy in Streams Along a Gradient of CH4 Availability. PMID:32477286
Hungry scale worms: Phylogenetics of Peinaleopolynoe (Polynoidae, Annelida), with four new species. PMID:32476973
Introductions and early spread of SARS-CoV-2 in the New York City area. PMID:32471856
Functional insights from the GC-poor genomes of two aphid parasitoids, Aphidius ervi and Lysiphlebus fabarum. PMID:32471448
Evidence for Common Horizontal Transmission of Wolbachia among Ants and Ant Crickets: Kleptoparasitism Added to the List. PMID:32471038
Uneven Missing Data Skew Phylogenomic Relationships within the Lories and Lorikeets. PMID:32470111
Revalidation of the Argentinian pouched lamprey Geotria macrostoma (Burmeister, 1868) with molecular and morphological evidence. PMID:32470001
Transcriptome-Wide Comparisons and Virulence Gene Polymorphisms of Host-Associated Genotypes of the Cnidarian Parasite Ceratonova shasta in Salmonids. PMID:32467979
Elaphomyces section Elaphomyces (Eurotiales, Ascomycota) - taxonomy and phylogeny of North European taxa, with the introduction of three new species. PMID:32467925
The Helvella corium species aggregate in Nordic countries - phylogeny and species delimitation. PMID:32467922
Phylogenetic placement of Paratrichaptum and reconsideration of Gloeophyllales. PMID:32467918
Diatomophthoraceae - a new family of olpidiopsis-like diatom parasitoids largely unrelated to Ectrogella. PMID:32467917
Cones, needles and wood: Micraspis (Micraspidaceae, Micraspidales fam. et ord. nov.) speciation segregates by host plant tissues. PMID:32467916
Taxonomic revision of the genus Zygorhizidium: Zygorhizidiales and Zygophlyctidales ord. nov. (Chytridiomycetes, Chytridiomycota). PMID:32467913
Penicillium diversity in Canadian bat caves, including a new species, P. speluncae. PMID:32467912
Holocarpic oomycete parasitoids of red algae are not Olpidiopsis. PMID:32467904
On the co-occurrence of species of Wynnea (Ascomycota, Pezizales, Sarcoscyphaceae) and Armillaria (Basidiomycota, Agaricales, Physalacriaceae). PMID:32467902
Epitypification of Cercospora rautensis, the causal agent of leaf spot disease on Securigera varia, and its first report from Iran. PMID:32467900
Allelochaeta (Sporocadaceae): pigmentation lost and gained. PMID:32467891
Balsamia (Sequestrate Helvellaceae, Ascomycota) in western North America. PMID:32467885
Arthrinium species associated with bamboo and reed plants in China. PMID:32467884
Molecular delimitation of European leafy liverworts of the genus Calypogeia based on plastid super-barcodes. PMID:32466772
Complete chloroplast genomes of four Physalis species (Solanaceae): lights into genome structure, comparative analysis, and phylogenetic relationships. PMID:32466748
Comparative Analyses of Five Complete Chloroplast Genomes from the Genus Pterocarpus (Fabacaeae). PMID:32466556
Impact of Gut Bacteria on the Infection and Transmission of Pathogenic Arboviruses by Biting Midges and Mosquitoes. PMID:32462391
Complete Chloroplast Genomes of 14 Mangroves: Phylogenetic and Comparative Genomic Analyses. PMID:32462024
The DNA methylation landscape of giant viruses. PMID:32461636
Multi-faceted analysis provides little evidence for recurrent whole-genome duplications during hexapod evolution. PMID:32460826
Genome skimming and microsatellite analysis reveal contrasting patterns of genetic diversity in a rare sandhill endemic (Erysimum teretifolium, Brassicaceae). PMID:32459825
Barrita Virus, a Novel Virus of the Patois Serogroup (Genus Orthobunyavirus; Family Peribunyaviridae). PMID:32458789
Morphologic, molecular, and pathogenic characterization of Phytophthora palmivora isolates causing flower rot on azalea. PMID:32458260
The Mitochondrial Genome of the Phytopathogenic Fungus Bipolaris sorokiniana and the Utility of Mitochondrial Genome to Infer Phylogeny of Dothideomycetes. PMID:32457727
Unraveling the Diversity of Eukaryotic Microplankton in a Large and Deep Perialpine Lake Using a High Throughput Sequencing Approach. PMID:32457713
Complete Mitochondrial Genome of the Fungal Biocontrol Agent Trichoderma atroviride: Genomic Features, Comparative Analysis and Insight Into the Mitochondrial Evolution in Trichoderma. PMID:32457712
Evolutionary analyses reveal independent origins of gene repertoires and structural motifs associated to fast inactivation in calcium-selective TRPV channels. PMID:32457384
A novel cyanobacterial geosmin producer, revising GeoA distribution and dispersion patterns in Bacteria. PMID:32457360
Is Shiga Toxin-Producing Escherichia coli O45 No Longer a Food Safety Threat? The Danger is Still Out There. PMID:32455956
Restriction of S-adenosylmethionine conformational freedom by knotted protein binding sites. PMID:32453784
Environmental DNA surveys detect distinct metazoan communities across abyssal plains and seamounts in the western Clarion Clipperton Zone. PMID:32452072
Convergent molecular evolution among ash species resistant to the emerald ash borer. PMID:32451426
Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. PMID:32451391
Evolution of the Insecticide Target Rdl in African Anopheles Is Driven by Interspecific and Interkaryotypic Introgression. PMID:32449755
Association between algal productivity and phycosphere composition in an outdoor Chlorella sorokiniana reactor based on multiple longitudinal analyses. PMID:32449601
Morphological and molecular characterization of Ektaphelenchoides pini () (Aphelenchoididae; Ektaphelenchinae) from Iran, with morphological and taxonomic observations on some species. PMID:32449330
Interactions between Schistosoma haematobium group species and their Bulinus spp. intermediate hosts along the Niger River Valley. PMID:32448268
Genomes of the dinoflagellate Polarella glacialis encode tandemly repeated single-exon genes with adaptive functions. PMID:32448240
The features of polyglutamine regions depend on their evolutionary stability. PMID:32448113
Stability of RNA sequences derived from the coronavirus genome in human cells. PMID:32446559
An Unusual Amino Acid Substitution Within Hummingbird Cytochrome c Oxidase Alters a Key Proton-Conducting Channel. PMID:32444359
Sawfly Genomes Reveal Evolutionary Acquisitions That Fostered the Mega-Radiation of Parasitoid and Eusocial Hymenoptera. PMID:32442304
Recurrent Loss of abaA, a Master Regulator of Asexual Development in Filamentous Fungi, Correlates with Changes in Genomic and Morphological Traits. PMID:32442273
Genomic Epidemiology of 2015-2016 Zika Virus Outbreak in Cape Verde. PMID:32441631
The mitochondrial genome of Acrobeloides varius (Cephalobomorpha) confirms non-monophyly of Tylenchina (Nematoda). PMID:32440374
Reduced Genome of the Gut Symbiotic Bacterium "Candidatus Benitsuchiphilus tojoi" Provides Insight Into Its Possible Roles in Ecology and Adaptation of the Host Insect. PMID:32435239
CD95 Structure, Aggregation and Cell Signaling. PMID:32432115
IMGT® Biocuration and Comparative Study of the T Cell Receptor Beta Locus of Veterinary Species Based on Homo sapiens TRB. PMID:32431713
Complete Mitochondrial Genomes of Two Toxin-Accumulated Nassariids (Neogastropoda: Nassariidae: Nassarius) and Their Implication for Phylogeny. PMID:32429583
Diversity and Toxicity of the Genus Coolia Meunier in Brazil, and Detection of 44-Methyl Gambierone in Coolia tropicalis. PMID:32429280
Taxon-rich phylogeny and taxonomy of the genus Phacus (Euglenida) based on morphological and molecular data. PMID:32428982
Morphological, genotypic and metabolomic signatures confirm interfamilial hybridization between the ubiquitous kelps Macrocystis (Arthrothamnaceae) and Lessonia (Lessoniaceae). PMID:32427928
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0. PMID:32427907
The evolutionary origins of the cat attractant nepetalactone in catnip. PMID:32426505
A phylogenetically novel cyanobacterium most closely related to Gloeobacter. PMID:32424249
The microbiome of alpine snow algae shows a specific inter-kingdom connectivity and algae-bacteria interactions with supportive capacities. PMID:32424246
Synergistic depletion of gut microbial consortia, but not individual antibiotics, reduces amyloidosis in APPPS1-21 Alzheimer's transgenic mice. PMID:32424118
Rarity is a more reliable indicator of land-use impacts on soil invertebrate communities than other diversity metrics. PMID:32423527
Metabolic diversity and co-occurrence of multiple Ferrovum species at an acid mine drainage site. PMID:32423375
rps3 as a Candidate Mitochondrial Gene for the Molecular Identification of Species from the Colletotrichum acutatum Species Complex. PMID:32422999
Comparative Analysis of the Complete Chloroplast Genomes in Allium Subgenus Cyathophora (Amaryllidaceae): Phylogenetic Relationship and Adaptive Evolution. PMID:32420321
ModiBodies: A computational method for modifying nanobodies in nanobody-antigen complexes to improve binding affinity and specificity. PMID:32418062
Genomes of the Venus Flytrap and Close Relatives Unveil the Roots of Plant Carnivory. PMID:32413308
Intrinsically disordered regions are abundant in simplexvirus proteomes and display signatures of positive selection. PMID:32411391
Evolutionary Changes in DnaA-Dependent Chromosomal Replication in Cyanobacteria. PMID:32411117
Development of nuclear SSR and chloroplast genome markers in diverse Liriodendron chinense germplasm based on low-coverage whole genome sequencing. PMID:32410692
Genomic evidence for convergent evolution of gene clusters for momilactone biosynthesis in land plants. PMID:32409606
Complete Genome Sequences of SARS-CoV-2 Strains Detected in Malaysia. PMID:32409547
Phylogenomic incongruence in Ceratocystis: a clue to speciation? PMID:32408859
Large-scale metabarcoding analysis of epipelagic and mesopelagic copepods in the Pacific. PMID:32407365
Are pangolins the intermediate host of the 2019 novel coronavirus (SARS-CoV-2)? PMID:32407364
Detection of Astrovirus in a Cow with Neurological Signs by Nanopore Technology, Italy. PMID:32403368
Diversity of Glutathione S-Transferases (GSTs) in Cyanobacteria with Reference to Their Structures, Substrate Recognition and Catalytic Functions. PMID:32403363
The draft genome of Staphylococcus warneri TRPF4, a bacteriocin producer with potent activity against the causative agent of Legionnaires' Disease. PMID:32399382
State-of-the-art tools unveil potent drug targets amongst clinically approved drugs to inhibit helicase in SARS-CoV-2. PMID:32399096
State-of-the-art tools to identify druggable protein ligand of SARS-CoV-2. PMID:32399095
SLX4 interacts with RTEL1 to prevent transcription-mediated DNA replication perturbations. PMID:32398829
Fish oil supplementation reduces maternal defensive inflammation and predicts a gut bacteriome with reduced immune priming capacity in infants. PMID:32398661
Structural venomics reveals evolution of a complex venom by duplication and diversification of an ancient peptide-encoding gene. PMID:32398368
Bacillus telluris sp. nov. Isolated from Greenhouse Soil in Beijing, China. PMID:32397635
Bioinformatic and Molecular Analysis of Satellite Repeat Diversity in Vaccinium Genomes. PMID:32397417
Identification of CSP Types and Genotypic Variability of Clinical and Environmental Isolates of Aspergillus fumigatus from Different Geographic Origins. PMID:32397318
PCR-RFLP Detection and Genogroup Identification of Piscirickettsia salmonis in Field Samples. PMID:32397152
Genome reconstruction of the non-culturable spinach downy mildew Peronospora effusa by metagenome filtering. PMID:32396560
Pervasive and non-random recombination in near full-length HIV genomes from Uganda. PMID:32395255
Molecular Epidemiology and Vaccine Compatibility Analysis of Seasonal Influenza Viruses in Wuhan, 2016-2019. PMID:32394327
Polyploidy breaks speciation barriers in Australian burrowing frogs Neobatrachus. PMID:32392206
Ultra-Barcoding Discovers a Cryptic Species in Paris yunnanensis (Melanthiaceae), a Medicinally Important Plant. PMID:32391031
Plastome Evolution in Saxifragaceae and Multiple Plastid Capture Events Involving Heuchera and Tiarella. PMID:32391025
Genome Sequencing of SAV3 Reveals Repeated Seeding Events of Viral Strains in Norwegian Aquaculture. PMID:32390982
The role of reactive oxygen species in the virulence of wheat leaf rust fungus Puccinia triticina. PMID:32390310
Emergence of genomic diversity and recurrent mutations in SARS-CoV-2. PMID:32387564
Coding potential and sequence conservation of SARS-CoV-2 and related animal viruses. PMID:32387562
Chlorcyclizine Inhibits Viral Fusion of Hepatitis C Virus Entry by Directly Targeting HCV Envelope Glycoprotein 1. PMID:32386595
The First Draft Genome of the Plasterer Bee Colletes gigas (Hymenoptera: Colletidae: Colletes). PMID:32386319
The Protector within: Comparative Genomics of APSE Phages across Aphids Reveals Rampant Recombination and Diverse Toxin Arsenals. PMID:32386316
Plastid Genome Evolution in the Subtribe Calypsoinae (Epidendroideae, Orchidaceae). PMID:32386305
Body-size Scaling is Related to Gut Microbial Diversity, Metabolism and Dietary Niche of Arboreal Folivorous Flying Squirrels. PMID:32385374
The loss of photosynthesis pathway and genomic locations of the lost plastid genes in a holoparasitic plant Aeginetia indica. PMID:32384868
Past and ongoing adaptation of human cytomegalovirus to its host. PMID:32384127
Alterations of fecal microbiome characteristics by dietary soy isoflavone ingestion in growing pigs infected with porcine reproductive and respiratory syndrome virus. PMID:32379891
Leveraging plastomes for comparative analysis and phylogenomic inference within Scutellarioideae (Lamiaceae). PMID:32379799
The Quest for Orthologs benchmark service and consensus calls in 2020. PMID:32374845
Crepis desertorum (Asteraceae, Cichorieae), a new species from northern Xinjiang (China) based on morphological and molecular data. PMID:32373765
Evolution of Neuropeptide Precursors in Polyneoptera (Insecta). PMID:32373067
SARS-CoV-2 and ORF3a: Nonsynonymous Mutations, Functional Domains, and Viral Pathogenesis. PMID:32371472
Spectral sensitivity of cone vision in the diurnal murid Rhabdomys pumilio. PMID:32371443
Microbial Metabolic Potential of Phenol Degradation in Wastewater Treatment Plant of Crude Oil Refinery: Analysis of Metagenomes and Characterization of Isolates. PMID:32365784
New Species of Termitomyces (Lyophyllaceae, Basidiomycota) from Sabah (Northern Borneo), Malaysia. PMID:32363037
Genomic Epidemiology of SARS-CoV-2 in Guangdong Province, China. PMID:32359424
Phylogenomics Reveals Ancient Gene Tree Discordance in the Amphibian Tree of Life. PMID:32359157
A common allosteric mechanism regulates homeostatic inactivation of auxin and gibberellin. PMID:32358569
A Fog-Irrigated Soil Substrate System Unifies and Optimizes Cyanobacterial Biocrust Inoculum Production. PMID:32358005
Uncharted digenean diversity in Lake Tanganyika: cryptogonimids (Digenea: Cryptogonimidae) infecting endemic lates perches (Actinopterygii: Latidae). PMID:32357898
IMA Genome-F 11: Draft genome sequences of Fusarium xylarioides, Teratosphaeria gauchensis and T. zuluensis and genome annotation for Ceratocystis fimbriata. PMID:32355613
Addressing the diversity of Xylodon raduloides complex through integrative taxonomy. PMID:32355610
Development but not diet alters microbial communities in the Neotropical arboreal trap jaw ant Daceton armigerum: an exploratory study. PMID:32355187
Independent Whole-Genome Duplications Define the Architecture of the Genomes of the Devastating West African Cacao Black Pod Pathogen Phytophthora megakarya and Its Close Relative Phytophthora palmivora. PMID:32354704
Development of CRISPR as an Antiviral Strategy to Combat SARS-CoV-2 and Influenza. PMID:32353252
Exploring novel bacterial terpene synthases. PMID:32353014
Interaction of two strongly divergent archaellins stabilizes the structure of the Halorubrum archaellum. PMID:32352651
Identification and Quality Evaluation of Raw and Processed Asarum Species Using Microscopy, DNA Barcoding, and Gas Chromatography-Mass Spectrometry. PMID:32351753
Plastome Evolution in Dolomiaea (Asteraceae, Cardueae) Using Phylogenomic and Comparative Analyses. PMID:32351518
Patterns in Microbial Assemblages Exported From the Meltwater of Arctic and Sub-Arctic Glaciers. PMID:32351489
Genomic Investigation of the Strawberry Pathogen Phytophthora fragariae Indicates Pathogenicity Is Associated With Transcriptional Variation in Three Key Races. PMID:32351458
Decoding the evolution and transmissions of the novel pneumonia coronavirus (SARS-CoV-2 / HCoV-19) using whole genomic data. PMID:32351056
Phylodynamic analysis and evaluation of the balance between anthropic and environmental factors affecting IBV spreading among Italian poultry farms. PMID:32350378
Under-the-Radar Dengue Virus Infections in Natural Populations of Aedes aegypti Mosquitoes. PMID:32350095
Evaluation of the relative roles of the Tabanidae and Glossinidae in the transmission of trypanosomosis in drug resistance hotspots in Mozambique. PMID:32349788
Massively multiplexed nucleic acid detection with Cas13. PMID:32349121
Structural analysis of pathogenic missense mutations in GABRA2 and identification of a novel de novo variant in the desensitization gate. PMID:32347641
Catalase and Ascorbate Peroxidase in Euglenozoan Protists. PMID:32344595
Monkeypox virus emergence in wild chimpanzees reveals distinct clinical outcomes and viral diversity. PMID:32341480
Diversity of mycorrhizal Tulasnella associated with epiphytic and rupicolous orchids from the Brazilian Atlantic Forest, including four new species. PMID:32341376
Unraveling the Phylogenomic Relationships of the Most Diverse African Palm Genus Raphia (Calamoideae, Arecaceae). PMID:32340211
Antifungal compounds with anticancer potential from Trichoderma sp. P8BDA1F1, an endophytic fungus from Begonia venosa. PMID:32333271
A Soluble Fiber Diet Increases Bacteroides fragilis Group Abundance and Immunoglobulin A Production in the Gut. PMID:32332136
Comparative Analysis of the Complete Plastid Genome of Five Bupleurum Species and New Insights into DNA Barcoding and Phylogenetic Relationship. PMID:32331381
Mitochondrial COI gene is valid to delimitate Tylenchidae (Nematoda: Tylenchomorpha) species. PMID:32330378
Cephalenchus driekieae n. sp. (Nematoda: Tylenchidae) from South Africa, a new member of the genus with a long pharyngeal overlap. PMID:32329292
Natronomonas salsuginis sp. nov., a New Inhabitant of a Marine Solar Saltern. PMID:32326357
Non-parametric and semi-parametric support estimation using SEquential RESampling random walks on biomolecular sequences. PMID:32322294
Isolation and characterization of diverse microbial representatives from the human skin microbiome. PMID:32321582
Phylogenetic Analysis and Structural Modeling of SARS-CoV-2 Spike Protein Reveals an Evolutionary Distinct and Proteolytically Sensitive Activation Loop. PMID:32320687
Expansion of the Transporter-Opsin-G protein-coupled receptor superfamily with five new protein families. PMID:32320418
Virome Analysis of Aphid Populations That Infest the Barley Field: The Discovery of Two Novel Groups of Nege/Kita-Like Viruses and Other Novel RNA Viruses. PMID:32318034
The Computational Diet: A Review of Computational Methods Across Diet, Microbiome, and Health. PMID:32318028
Sitticine jumping spiders: phylogeny, classification, and chromosomes (Araneae, Salticidae, Sitticini). PMID:32317852
Severe Plastid Genome Size Reduction in a Mycoheterotrophic Orchid, Danxiaorchis singchiana, Reveals Heavy Gene Loss and Gene Relocations. PMID:32316476
Clade composition of a plant community indicates its phylogenetic diversity. PMID:32313633
From conservation to structure, studies of magnetosome associated cation diffusion facilitators (CDF) proteins in Proteobacteria. PMID:32310978
Genomic analysis of natural intra-specific hybrids among Ethiopian isolates of Leishmania donovani. PMID:32310945
Characterization and spontaneous induction of urinary tract Streptococcus anginosus prophages. PMID:32310742
Gene Function Rather than Reproductive Mode Drives the Evolution of RNA Helicases in Sexual and Apomictic Boechera. PMID:32302391
Detection and genotypes of Toxoplasma gondii DNA in feces of domestic cats in Colombia. PMID:32302287
Comparative analyses of the V4 and V9 regions of 18S rDNA for the extant eukaryotic community using the Illumina platform. PMID:32300168
Genome-wide analysis of the citrus B3 superfamily and their association with somatic embryogenesis. PMID:32299363
A new stunt nematode, Geocenamus chengi n. sp. (Nematoda: Merliniinae) in the rhizosphere of tea (Camellia sinensis) from Zhejiang Province, China. PMID:32298059
Newly identified viral genomes in pangolins with fatal disease. PMID:32296543
Repeated horizontal gene transfers triggered parallel evolution of magnetotaxis in two evolutionary divergent lineages of magnetotactic bacteria. PMID:32296121
PCR-based detection and genetic characterization of porcine parvoviruses in South Korea in 2018. PMID:32295585
Population structure of Lassa Mammarenavirus in West Africa. PMID:32294960
ECuADOR-Easy Curation of Angiosperm Duplicated Organellar Regions, a tool for cleaning and curating plastomes assembled from next generation sequencing pipelines. PMID:32292644
Two freshwater shrimp species of the genus Caridina (Decapoda, Caridea, Atyidae) from Dawanshan Island, Guangdong, China, with the description of a new species. PMID:32292268
Insights into the Diversification and Evolution of R2R3-MYB Transcription Factors in Plants. PMID:32291329
The Aphid X Chromosome Is a Dangerous Place for Functionally Important Genes: Diverse Evolution of Hemipteran Genomes Based on Chromosome-Level Assemblies. PMID:32289166
Characterization of viruses in a tapeworm: phylogenetic position, vertical transmission, and transmission to the parasitized host. PMID:32286546
Sustained RNA virome diversity in Antarctic penguins and their ticks. PMID:32286545
Integrating structural and evolutionary data to interpret variation and pathogenicity in adapter protein complex 4. PMID:32285480
Genome sequence of Gossypium herbaceum and genome updates of Gossypium arboreum and Gossypium hirsutum provide insights into cotton A-genome evolution. PMID:32284579
An ancient evolutionary connection between Ribonuclease A and EndoU families. PMID:32284351
Aerococcus urinae Isolated from Women with Lower Urinary Tract Symptoms: In Vitro Aggregation and Genome Analysis. PMID:32284319
In silico Analysis of Genetic Diversity of Human Hepatitis B Virus in Southeast Asia, Australia and New Zealand. PMID:32283837
Tracing the Origin of Planktonic Protists in an Ancient Lake. PMID:32283732
Application of Adaptive Evolution to Improve the Stability of Bacteriophages during Storage. PMID:32283683
The Complete Chloroplast Genome of Two Important Annual Clover Species, Trifolium alexandrinum and T. resupinatum: Genome Structure, Comparative Analyses and Phylogenetic Relationships with Relatives in Leguminosae. PMID:32283660
Conserved nuclear hormone receptors controlling a novel plastic trait target fast-evolving genes expressed in a single cell. PMID:32282814
New Genomes from the Congo Basin Expand History of CRF01_AE Origin and Dissemination. PMID:32281388
Evaluating DCA-based method performances for RNA contact prediction by a well-curated data set. PMID:32276988
A Tale of Two Families: Whole Genome and Segmental Duplications Underlie Glutamine Synthetase and Phosphoenolpyruvate Carboxylase Diversity in Narrow-Leafed Lupin (Lupinus angustifolius L.). PMID:32276381
The rare lncRNA GOLLD is widespread and structurally conserved among Mycobacterium tRNA arrays. PMID:32275844
Rapid mitochondrial genome sequencing based on Oxford Nanopore Sequencing and a proxy for vertebrate species identification. PMID:32274008
The major subunit of widespread competence pili exhibits a novel and conserved type IV pilin fold. PMID:32273343
Insights into the origin of metazoan multicellularity from predatory unicellular relatives of animals. PMID:32272915
A benchmark study of ab initio gene prediction methods in diverse eukaryotic organisms. PMID:32272892
Complete Mitogenomic Structure and Phylogenetic Implications of the Genus Ostrinia (Lepidoptera: Crambidae). PMID:32272743
Comprehensive Transcriptome Analysis Reveals Insights into Phylogeny and Positively Selected Genes of Sillago Species. PMID:32272562
Lignicolous freshwater ascomycota from Thailand: Phylogenetic and morphological characterisation of two new freshwater fungi: Tingoldiago hydei sp. nov. and T. clavata sp. nov. from Eastern Thailand. PMID:32269482
Compartmentalization and Clonal Amplification of HIV-1 in the Male Genital Tract Characterized Using Next-Generation Sequencing. PMID:32269124
Genomic Epidemiology and Evolution of Diverse Lineages of Clinical Campylobacter jejuni Cocirculating in New Hampshire, USA, 2017. PMID:32269101
Spaghetti to a Tree: A Robust Phylogeny for Terebelliformia (Annelida) Based on Transcriptomes, Molecular and Morphological Data. PMID:32268525
Reconstructing the Complex Evolutionary History of the Papuasian Schefflera Radiation Through Herbariomics. PMID:32265950
Complex intron generation in the yeast genus Lipomyces. PMID:32265493
A multidimensional systems biology analysis of cellular senescence in aging and disease. PMID:32264951
A Novel Divergent Geminivirus Identified in Asymptomatic New World Cactaceae Plants. PMID:32260283
Evolution of Predicted Acid Resistance Mechanisms in the Extremely Acidophilic Leptospirillum Genus. PMID:32260256
Morphology and molecular phylogeny of three new deep-sea species of Chrysogorgia (Cnidaria, Octocorallia) from seamounts in the tropical Western Pacific Ocean. PMID:32257645
Architectural instability, inverted skews and mitochondrial phylogenomics of Isopoda: outgroup choice affects the long-branch attraction artefacts. PMID:32257344
Chromosome-level genome assembly, annotation and evolutionary analysis of the ornamental plant Asparagus setaceus. PMID:32257234
Complete Chloroplast Genome Sequence of Hibiscus cannabinus and Comparative Analysis of the Malvaceae Family. PMID:32256523
Characterisation of Myxobolus stellatus n. sp. (Cnidaria: Myxobolidae) infecting the cranial nerves and ganglia of the spotfin hatchetfish Thoracocharax stellatus (Kner) (Characiformes: Gasteropelecidae) from Colombia. PMID:32253575
Loss of Filamentous Multicellularity in Cyanobacteria: the Extremophile Gloeocapsopsis sp. Strain UTEX B3054 Retained Multicellular Features at the Genomic and Behavioral Levels. PMID:32253342
Characteristic features of the SERA multigene family in the malaria parasite. PMID:32252804
Differences in Tissue and Species Tropism of Reptarenavirus Species Studied by Vesicular Stomatitis Virus Pseudotypes. PMID:32252443
An Optimized Metabarcoding Method for Mimiviridae. PMID:32252306
Characterization of Nuclear and Mitochondrial Genomes of Two Tobacco Endophytic Fungi Leptosphaerulina chartarum and Curvularia trifolii and Their Contributions to Phylogenetic Implications in the Pleosporales. PMID:32252284
Genome sequencing of Rigidoporus microporus provides insights on genes important for wood decay, latex tolerance and interspecific fungal interactions. PMID:32251355
miRNA target identification and prediction as a function of time in gene expression data. PMID:32249661
Gene drive and resilience through renewal with next generation Cleave and Rescue selfish genetic elements. PMID:32245808
A Host-Specific Blocking Primer Combined with Optimal DNA Extraction Improves the Detection Capability of a Metabarcoding Protocol for Canine Vector-Borne Bacteria. PMID:32244645
Inventory and Evolution of Mitochondrion-localized Family A DNA Polymerases in Euglenozoa. PMID:32244644
Histone Methyltransferase DOT1L is Involved in Larval Molting and Second Stage Nymphal Feeding in Ornithodoros Moubata. PMID:32244625
The First Genome Survey of the Antarctic Krill (Euphausia superba) Provides a Valuable Genetic Resource for Polar Biomedical Research. PMID:32244466
OLGenie: Estimating Natural Selection to Predict Functional Overlapping Genes. PMID:32243542
MitoFinder: Efficient automated large-scale extraction of mitogenomic data in target enrichment phylogenomics. PMID:32243090
Metagenomic views of microbial dynamics influenced by hydrocarbon seepage in sediments of the Gulf of Mexico. PMID:32238866
Computational Inference of Selection Underlying the Evolution of the Novel Coronavirus, Severe Acute Respiratory Syndrome Coronavirus 2. PMID:32238584
Identification of Reptarenaviruses, Hartmaniviruses, and a Novel Chuvirus in Captive Native Brazilian Boa Constrictors with Boid Inclusion Body Disease. PMID:32238580
Molecular Drivers of Lymphocyte Organization in Vertebrate Mucosal Surfaces: Revisiting the TNF Superfamily Hypothesis. PMID:32238457
Toxin-Antitoxin Gene Pairs Found in Tn3 Family Transposons Appear To Be an Integral Part of the Transposition Module. PMID:32234815
Genetic and molecular characterization of multicomponent resistance of Pseudomonas against allicin. PMID:32234751
Deep evolutionary analysis reveals the design principles of fold A glycosyltransferases. PMID:32234211
Comparison of pathogenicity of subtype H9 avian influenza wild-type viruses from a wide geographic origin expressing mono-, di-, or tri-basic hemagglutinin cleavage sites. PMID:32234073
Bringing to light the molecular evolution of GUX genes in plants. PMID:32232316
Impatiens glandulifera (Himalayan balsam) chloroplast genome sequence as a promising target for populations studies. PMID:32231875
Ooctonus vulgatus (Hymenoptera, Mymaridae), a potential biocontrol agent to reduce populations of Philaenus spumarius (Hemiptera, Aphrophoridae) the main vector of Xylella fastidiosa in Europe. PMID:32231870
Interspecific Signaling Between the Parasitic Plant and the Host Plants Regulate Xylem Vessel Cell Differentiation in Haustoria of Cuscuta campestris. PMID:32231674
Egyptian Rousette IFN-ω Subtypes Elicit Distinct Antiviral Effects and Transcriptional Responses in Conspecific Cells. PMID:32231668
Different Genetic Sources Contribute to the Small RNA Population in the Arbuscular Mycorrhizal Fungus Gigaspora margarita. PMID:32231650
A Sample-to-Report Solution for Taxonomic Identification of Cultured Bacteria in the Clinical Setting Based on Nanopore Sequencing. PMID:32229603
Alternate expression of CONSTANS-LIKE 4 in short days and CONSTANS in long days facilitates day-neutral response in Rosa chinensis. PMID:32227095
Complete Genome Sequencing, Molecular Epidemiological, and Pathogenicity Analysis of Pigeon Paramyxoviruses Type 1 Isolated in Guangxi, China during 2012-2018. PMID:32224965
Genome-scale metabolic models of Microbacterium species isolated from a high altitude desert environment. PMID:32221328
In silico assessment of the impact of 2019 novel coronavirus genomic variation on the efficiency of published real-time quantitative polymerase chain reaction detection assays. PMID:32221132
Miconia lucenae (Melastomataceae), a new species from montane Atlantic Forest in Espírito Santo, Brazil. PMID:32219027
Disentangling the interplay of positive and negative selection forces that shaped mitochondrial genomes of Gammarus pisinnus and Gammarus lacustris. PMID:32218929
Assessment and comparison of putative amine receptor complement/diversity in the brain and eyestalk ganglia of the lobster, Homarus americanus. PMID:32215729
Back to the roots: a reappraisal of Neocosmospora. PMID:32214499
Two cases of type-a Haemophilus influenzae meningitis within the same week in the same hospital are phylogenetically unrelated but recently exchanged capsule genes. PMID:32213257
Inferring Tunicate Relationships and the Evolution of the Tunicate Hox Cluster with the Genome of Corella inflata. PMID:32211845
The Quaternary evolutionary history of Bristol rock cress (Arabis scabra, Brassicaceae), a Mediterranean element with an outpost in the north-western Atlantic region. PMID:32211750
The complete mitochondrial genome of Flavoperla biocellata Chu, 1929 (Plecoptera: Perlidae) and the phylogenetic analyses of Plecoptera. PMID:32211236
Detection of H3N8 influenza A virus with multiple mammalian-adaptive mutations in a rescued Grey seal (Halichoerus grypus) pup. PMID:32211197
The complete chloroplast genome of Myriophyllum spicatum reveals a 4-kb inversion and new insights regarding plastome evolution in Haloragaceae. PMID:32211179
A Giant Genome for a Giant Crayfish (Cherax quadricarinatus) With Insights Into cox1 Pseudogenes in Decapod Genomes. PMID:32211032
New Insights Into the Plastome Evolution of the Millettioid/Phaseoloid Clade (Papilionoideae, Leguminosae). PMID:32210983
Sergentomyia schwetzi: Salivary gland transcriptome, proteome and enzymatic activities in two lineages adapted to different blood sources. PMID:32208452
Can we use it? On the utility of de novo and reference-based assembly of Nanopore data for plant plastome sequencing. PMID:32208422
Diversity and phylogeny of basidiomycetous yeasts from plant leaves and soil: Proposal of two new orders, three new families, eight new genera and one hundred and seven new species. PMID:32206137
Transcriptome reconstruction and functional analysis of eukaryotic marine plankton communities via high-throughput metagenomics and metatranscriptomics. PMID:32205368
Expansion of the Major Facilitator Superfamily (MFS) to include novel transporters as well as transmembrane-acting enzymes. PMID:32205149
Hyena paleogenomes reveal a complex evolutionary history of cross-continental gene flow between spotted and cave hyena. PMID:32201717
Co-expression clustering across flower development identifies modules for diverse floral forms in Achimenes (Gesneriaceae). PMID:32201652
Patterns of change in α and β taxonomic and phylogenetic diversity in the secondary succession of semi-natural grasslands in the Northern Apennines. PMID:32201641
What lies beneath: Hydra provides cnidarian perspectives into the evolution of FGFR docking proteins. PMID:32198667
Discovery of a novel integron-borne aminoglycoside resistance gene present in clinical pathogens by screening environmental bacterial communities. PMID:32197644
Functional Characterization of Sex Pheromone Receptors in the Fall Armyworm (Spodoptera frugiperda). PMID:32197457
Identification, Characterization and Expression Analysis of TRP Channel Genes in the Vegetable Pest, Pieris rapae. PMID:32197450
Functional integration of "undead" neurons in the olfactory system. PMID:32195354
Under the Christmas Tree: Belowground Bacterial Associations With Abies nordmanniana Across Production Systems and Plant Development. PMID:32194515
Identification and engineering of 32 membered antifungal macrolactone notonesomycins. PMID:32192516
Free to Circulate: An Update on the Epidemiological Dynamics of Porcine Circovirus 2 (PCV-2) in Italy Reveals the Role of Local Spreading, Wild Populations, and Foreign Countries. PMID:32192210
Chromosome-level genome assembly of Aldrichina grahami, a forensically important blowfly. PMID:32191812
Gene editing of three BnITPK genes in tetraploid oilseed rape leads to significant reduction of phytic acid in seeds. PMID:32191373
Unmatched Level of Molecular Convergence among Deeply Divergent Complex Multicellular Fungi. PMID:32191325
Arboricolonus simplex gen. et sp. nov. and novelties in Cadophora, Minutiella and Proliferodiscus from Prunus wood in Germany. PMID:32189979
Stable species boundaries despite ten million years of hybridization in tropical eels. PMID:32188850
Comparative Analysis of RNA Virome Composition in Rabbits and Associated Ectoparasites. PMID:32188733
A new rare nematode Nothocriconemoides hangzhouensis n. sp. (Nematoda: Criconematidae) from Hangzhou, China. PMID:32185945
Evolutionary rate variation among genes involved in galactomannan biosynthesis in Coffea canephora. PMID:32185001
New genome assembly of the barn owl (Tyto alba alba). PMID:32184981
The C-Terminal RRM/ACT Domain Is Crucial for Fine-Tuning the Activation of 'Long' RelA-SpoT Homolog Enzymes by Ribosomal Complexes. PMID:32184768
Neuropeptides and G-Protein Coupled Receptors (GPCRs) in the Red Palm Weevil Rhynchophorus ferrugineus Olivier (Coleoptera: Dryophthoridae). PMID:32184735
The Early Peopling of the Philippines based on mtDNA. PMID:32184451
Genetic Adaptations of an Island Pit-Viper to a Unique Sedentary Life with Extreme Seasonal Food Availability. PMID:32184370
Drosophila SLC22 Orthologs Related to OATs, OCTs, and OCTNs Regulate Development and Responsiveness to Oxidative Stress. PMID:32183456
A Novel, Integron-Regulated, Class C β-Lactamase. PMID:32183280
Molecular basis for catabolism of the abundant metabolite trans-4-hydroxy-L-proline by a microbial glycyl radical enzyme. PMID:32180548
Description of Laimaphelenchus sinensis n. sp. (Nematoda: Aphelenchoididae) from declining Chinese pine, Pinus tabuliformis in Beijing, China. PMID:32180385
Niche Partitioning with Temperature among Heterocystous Cyanobacteria (Scytonema spp., Nostoc spp., and Tolypothrix spp.) from Biological Soil Crusts. PMID:32178304
Complex Evolutionary History of the Y Chromosome in Flies of the Drosophila obscura Species Group. PMID:32176296
Leucine-rich repeat receptor-like kinase II phylogenetics reveals five main clades throughout the plant kingdom. PMID:32175641
Evolutionary history of the Cameroon radiation of puddle frogs (Phrynobatrachidae: Phrynobatrachus), with descriptions of two critically endangered new species from the northern Cameroon Volcanic Line. PMID:32175182
Genome-wide survey of the bHLH super gene family in Brassica napus. PMID:32171243
Anthoceros genomes illuminate the origin of land plants and the unique biology of hornworts. PMID:32170292
Performance of virtual screening against GPCR homology models: Impact of template selection and treatment of binding site plasticity. PMID:32168319
Towards conserving natural diversity: A biotic inventory by observations, specimens, DNA barcoding and high-throughput sequencing methods. PMID:32165853
Metabolomic-guided discovery of cyclic nonribosomal peptides from Xylaria ellisii sp. nov., a leaf and stem endophyte of Vaccinium angustifolium. PMID:32165688
Draft genomes of female and male turbot Scophthalmus maximus. PMID:32165614
Virome diversity analysis reveals novel enteroviruses and a human picobirnavirus in stool samples from African green monkeys with diarrhea. PMID:32165243
The low-copy nuclear gene Agt1 as a novel DNA barcoding marker for Bromeliaceae. PMID:32164546
Circulation of pantropic canine coronavirus in autochthonous and imported dogs, Italy. PMID:32163663
Comparison of transcriptomes from two chemosensory organs in four decapod crustaceans reveals hundreds of candidate chemoreceptor proteins. PMID:32163507
Characterization of the prohormone complement in Amphiprion and related fish species integrating genome and transcriptome assemblies. PMID:32163422
De novo sequence of the mitochondrial genome of Tyrophagus putrescentiae (Acari: Sarcoptiformes) including 22 tRNA sequences and the largest non-coding region. PMID:32162137
Adaptations of Interferon Regulatory Factor 3 with Transition from Terrestrial to Aquatic Life. PMID:32161340
Comprehensive phylogenomic analysis of ERF genes in sorghum provides clues to the evolution of gene functions and redundancy among gene family members. PMID:32158635
Indigenous Ammonia-Oxidizing Archaea in Oxic Subseafloor Oceanic Crust. PMID:32156797
New Viral Sequences Identified in the Flavescence Dorée Phytoplasma Vector Scaphoideus titanus. PMID:32155753
Identification of trypanosomatids and blood feeding preferences of phlebotomine sand fly species common in Sicily, Southern Italy. PMID:32155171
Initial Characterization of the Chloroplast Genome of Vicia sepium, an Important Wild Resource Plant, and Related Inferences About Its Evolution. PMID:32153639
Systems Biology Analysis Reveals Eight SLC22 Transporter Subgroups, Including OATs, OCTs, and OCTNs. PMID:32150922
Long transposon-rich centromeres in an oomycete reveal divergence of centromere features in Stramenopila-Alveolata-Rhizaria lineages. PMID:32150559
Comparative Genomics of Actinobacillus pleuropneumoniae Serotype 8 Reveals the Importance of Prophages in the Genetic Variability of the Species. PMID:32149072
Macrostylis metallicola spec. nov.-an isopod with geographically clustered genetic variability from a polymetallic-nodule area in the Clarion-Clipperton Fracture Zone. PMID:32149025
Iroki: automatic customization and visualization of phylogenetic trees. PMID:32149022
Maritime trap-jaw ants (Hymenoptera, Formicidae, Ponerinae) of the Indo-Australian region - redescription of Odontomachus malignus Smith and description of a related new species from Singapore, including first descriptions of males. PMID:32148428
Parallel evolution of arborescent carrots (Daucus) in Macaronesia. PMID:32147817
Chloroplast genomic comparison of two sister species Allium macranthum and A. fasciculatum provides valuable insights into adaptive evolution. PMID:32146713
The evolutionarily conserved HtrA is associated with stress tolerance and protein homeostasis in the halotolerant cyanobacterium Halothece sp. PCC7418. PMID:32146515
Rabies in Uganda: rabies knowledge, attitude and practice and molecular characterization of circulating virus strains. PMID:32143593
Nonstructural proteins NS7b and NS8 are likely to be phylogenetically associated with evolution of 2019-nCoV. PMID:32142938
Characterization and Incidence of the First Member of the Genus Mitovirus Identified in the Phytopathogenic Species Fusarium oxysporum. PMID:32138251
PromA Plasmids Are Instrumental in the Dissemination of Linuron Catabolic Genes Between Different Genera. PMID:32132980
Genome-based classification of Burkholderia cepacia complex provides new insight into its taxonomic status. PMID:32131884
Trichoderma from Brazilian garlic and onion crop soils and description of two new species: Trichoderma azevedoi and Trichoderma peberdyi. PMID:32130211
Phylogenomics of Rhodocyclales and its distribution in wastewater treatment systems. PMID:32127605
Expanded inverted repeat region with large scale inversion in the first complete plastid genome sequence of Plantago ovata. PMID:32127603
Distribution of Candidatus Liberibacter species in Eastern Africa, and the First Report of Candidatus Liberibacter asiaticus in Kenya. PMID:32127552
Using Colonization Assays and Comparative Genomics To Discover Symbiosis Behaviors and Factors in Vibrio fischeri. PMID:32127462
Origin and Evolution of Polycyclic Triterpene Synthesis. PMID:32125435
Deep Evolutionary History of the Phox and Bem1 (PB1) Domain Across Eukaryotes. PMID:32123237
The Gossypium longicalyx Genome as a Resource for Cotton Breeding and Evolution. PMID:32122962
The draft nuclear genome sequence and predicted mitochondrial proteome of Andalucia godoyi, a protist with the most gene-rich and bacteria-like mitochondrial genome. PMID:32122349
Evolution of metabolic capabilities and molecular features of diplonemids, kinetoplastids, and euglenids. PMID:32122335
Comparative functional genomics analysis of cytochrome P450 gene superfamily in wheat and maize. PMID:32122306
The First Plastid Genome of the Holoparasitic Genus Prosopanche (Hydnoraceae). PMID:32121567
Complete Chloroplast Genomes of Chlorophytum comosum and Chlorophytum gallabatense: Genome Structures, Comparative and Phylogenetic Analysis. PMID:32121524
Clinical Presentation and Serologic Response during a Rabies Epizootic in Captive Common Vampire Bats (Desmodus rotundus). PMID:32121499
Genotyping Porcine Circovirus 3 (PCV-3) Nowadays: Does It Make Sense? PMID:32121102
Genomic recombination between infectious laryngotracheitis vaccine strains occurs under a broad range of infection conditions in vitro and in ovo. PMID:32119681
Phytoplankton thermal responses adapt in the absence of hard thermodynamic constraints. PMID:32118294
Genome sequence of the agarwood tree Aquilaria sinensis (Lour.) Spreng: the first chromosome-level draft genome in the Thymelaeceae family. PMID:32118265
The complete mitogenome of Arion vulgaris Moquin-Tandon, 1855 (Gastropoda: Stylommatophora): mitochondrial genome architecture, evolution and phylogenetic considerations within Stylommatophora. PMID:32117634
Invasive vegetation affects amphibian skin microbiota and body condition. PMID:32117625
A Phylogenomic Perspective on Evolution and Discordance in the Alpine-Arctic Plant Clade Micranthes (Saxifragaceae). PMID:32117341
Passion Fruit Green Spot Virus Genome Harbors a New Orphan ORF and Highlights the Flexibility of the 5'-End of the RNA2 Segment Across Cileviruses. PMID:32117189
In silico analyses suggest the cardiac ganglion of the lobster, Homarus americanus, contains a diverse array of putative innexin/innexin-like proteins, including both known and novel members of this protein family. PMID:32115669
A recently evolved diflavin-containing monomeric nitrate reductase is responsible for highly efficient bacterial nitrate assimilation. PMID:32111737
Identification of two novel adenoviruses in smooth-billed ani and tropical screech owl. PMID:32109945
Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes. PMID:32108862
Instruction of microbiome taxonomic profiling based on 16S rRNA sequencing. PMID:32108315
Correlation between Organelle Genetic Variation and RNA Editing in Dinoflagellates Associated with the Coral Acropora digitifera. PMID:32108224
Polymerization in the actin ATPase clan regulates hexokinase activity in yeast. PMID:32108112
Genomic insight into the origins and evolution of symbiosis genes in Phaseolus vulgaris microsymbionts. PMID:32106817
Preliminary Identification of Potential Vaccine Targets for the COVID-19 Coronavirus (SARS-CoV-2) Based on SARS-CoV Immunological Studies. PMID:32106567
Evolutionary history, potential intermediate animal host, and cross-species analyses of SARS-CoV-2. PMID:32104911
Asianopis gen. nov., a new genus of the spider family Deinopidae from Asia. PMID:32104139
Epidemiology of malaria and chloroquine resistance in Mizoram, northeastern India, a malaria-endemic region bordering Myanmar. PMID:32103751
Chromosomal-level assembly of Juglans sigillata genome using Nanopore, BioNano, and Hi-C analysis. PMID:32101299
Complex Evolution of Insect Insulin Receptors and Homologous Decoy Receptors, and Functional Significance of Their Multiplicity. PMID:32101294
Detection of live attenuated influenza vaccine virus and evidence of reassortment in the U.S. swine population. PMID:32100644
Data mining of metagenomes to find novel enzymes: a non-computationally intensive method. PMID:32099729
Tendentious effects of automated and manual metagenomic DNA purification protocols on broiler gut microbiome taxonomic profiling. PMID:32099013
Regulators of an ancient polyphenism evolved through episodic protein divergence and parallel gene radiations. PMID:32098612
Phylogenomic analysis of 589 metagenome-assembled genomes encompassing all major prokaryotic lineages from the gut of higher termites. PMID:32095380
High expression of ACE2 receptor of 2019-nCoV on the epithelial cells of oral mucosa. PMID:32094336
Dinoflagellates with relic endosymbiont nuclei as models for elucidating organellogenesis. PMID:32094181
Rapid in-country sequencing of whole virus genomes to inform rabies elimination programmes. PMID:32090172
The Role of Gut Microbiome Perturbation in Fatigue Induced by Repeated Stress from Chemoradiotherapy: A Proof of Concept Study. PMID:32090133
Revision of the Merodon serrulatus group (Diptera, Syrphidae). PMID:32089636
Rodents as intermediate hosts of cestode parasites of mammalian carnivores and birds of prey in Poland, with the first data on the life-cycle of Mesocestoides melesi. PMID:32087754
A New Family of Diverse Skin Peptides from the Microhylid Frog Genus Phrynomantis. PMID:32085597
Rooibos (Aspalathus linearis) Genome Size Estimation Using Flow Cytometry and K-Mer Analyses. PMID:32085566
Animal, Fungi, and Plant Genome Sequences Harbor Different Non-Canonical Splice Sites. PMID:32085510
A unique feature of swine ANP32A provides susceptibility to avian influenza virus infection in pigs. PMID:32084248
One step beyond a broad molecular phylogenetic analysis: Species delimitation of Adenomera marmorata Steindachner, 1867 (Anura: Leptodactylidae). PMID:32084229
Development of the Ileal Microbiota in Three Broiler Breeds. PMID:32083101
Linking influenza virus evolution within and between human hosts. PMID:32082616
Taxonomic Organization of the Family Brucellaceae Based on a Phylogenomic Approach. PMID:32082266
Virus Isolation from the First Patient with SARS-CoV-2 in Korea. PMID:32080990
A serine/threonine protein kinase encoding gene KERNEL NUMBER PER ROW6 regulates maize grain yield. PMID:32080171
A Molecular Phylogenetic Study of the Genus Phedimus for Tracing the Origin of "Tottori Fujita" Cultivars. PMID:32079195
Dynamic Evolution of De Novo DNA Methyltransferases in Rodent and Primate Genomes. PMID:32077945
Transcriptome-based target-enrichment baits for stony corals (Cnidaria: Anthozoa: Scleractinia). PMID:32077619
Diversity, structure, and synteny of the cutinase gene of Colletotrichum species. PMID:32076525
Discovery of Cytospora species associated with canker disease of tree hosts from Mount Dongling of China. PMID:32076384
Longistriata flava (Boletaceae, Basidiomycota) - a new monotypic sequestrate genus and species from Brazilian Atlantic Forest. PMID:32076382
Hydrogen peroxide sensor HPCA1 is an LRR receptor kinase in Arabidopsis. PMID:32076270
Extensive Genetic Diversity of Polyomaviruses in Sympatric Bat Communities: Host Switching versus Coevolution. PMID:32075934
Substantially adaptive potential in polyploid cyprinid fishes: evidence from biogeographic, phylogenetic and genomic studies. PMID:32075533
Whole genomic sequencing and sex-dependent abundance estimation of Cardinium sp., a common and hyperabundant bacterial endosymbiont of the American house dust mite, Dermatophagoides farinae. PMID:32072355
Complete Chloroplast Genome Sequence of Chinese Lacquer Tree (Toxicodendron vernicifluum, Anacardiaceae) and Its Phylogenetic Significance. PMID:32071921
Comparative analysis of chloroplast genomes for five Dicliptera species (Acanthaceae): molecular structure, phylogenetic relationships, and adaptive evolution. PMID:32071806
Molecular fossils reveal ancient associations of dsDNA viruses with several phyla of fungi. PMID:32071765
Phytochemical and comparative transcriptome analyses reveal different regulatory mechanisms in the terpenoid biosynthesis pathways between Matricaria recutita L. and Chamaemelum nobile L. PMID:32070270
Toward Modern Classification of Eustigmatophytes, Including the Description of Neomonodaceae Fam. Nov. and Three New Genera1. PMID:32068883
Pervasive Suicidal Integrases in Deep-Sea Archaea. PMID:32068866
Novel de Novo Genome of Cynopterus brachyotis Reveals Evolutionarily Abrupt Shifts in Gene Family Composition across Fruit Bats. PMID:32068833
Synteny-based analyses indicate that sequence divergence is not the main source of orphan genes. PMID:32066524
Exploration of Plastid Phylogenomic Conflict Yields New Insights into the Deep Relationships of Leguminosae. PMID:32065640
Genome structure reveals the diversity of mating mechanisms in Saccharomyces cerevisiae x Saccharomyces kudriavzevii hybrids, and the genomic instability that promotes phenotypic diversity. PMID:32065577
Reconstructing the evolutionary history of nitrogenases: Evidence for ancestral molybdenum-cofactor utilization. PMID:32065506
Parallel Microbial Ecology of Pasteuria and Nematode Species in Scottish Soils. PMID:32063916
Target Nuclear and Off-Target Plastid Hybrid Enrichment Data Inform a Range of Evolutionary Depths in the Orchid Genus Epidendrum. PMID:32063915
A pipeline for targeted metagenomics of environmental bacteria. PMID:32061258
Proteomic Characterization of Lignocellulolytic Enzymes Secreted by the Insect-Associated Fungus Daldinia decipiens oita, Isolated from a Forest in Northern Japan. PMID:32060026
Cultivable, Host-Specific Bacteroidetes Symbionts Exhibit Diverse Polysaccharolytic Strategies. PMID:32060023
Detection of fowl adenovirus D strains in wild birds in Poland by Loop-Mediated Isothermal Amplification (LAMP). PMID:32059679
Evolution of self-compatibility by a mutant Sm-RNase in citrus. PMID:32055045
Molecular phylogenetics and mitogenomics of three avian dicrocoeliids (Digenea: Dicrocoeliidae) and comparison with mammalian dicrocoeliids. PMID:32054541
Comparison of the abilities of universal, super, and specific DNA barcodes to discriminate among the original species of Fritillariae cirrhosae bulbus and its adulterants. PMID:32053689
RHS-elements function as type II toxin-antitoxin modules that regulate intra-macrophage replication of Salmonella Typhimurium. PMID:32053596
Clades of huge phages from across Earth's ecosystems. PMID:32051592
Southern Chinese populations harbour non-nucleatum Fusobacteria possessing homologues of the colorectal cancer-associated FadA virulence factor. PMID:32051205
The Mitochondrial Genome of Amara aulica (Coleoptera, Carabidae, Harpalinae) and Insights into the Phylogeny of Ground Beetles. PMID:32050506
Predicting antimicrobial resistance in Pseudomonas aeruginosa with machine learning-enabled molecular diagnostics. PMID:32048461
Identification of the molecular components of a putative Jasus edwardsii (Crustacea; Decapoda; Achelata) circadian signaling system. PMID:32048048
Characterizing lineage-specific evolution and the processes driving genomic diversification in chordates. PMID:32046633
Trait differentiation and modular toxin expression in palm-pitvipers. PMID:32046632
Combining genomics and epidemiology to track mumps virus transmission in the United States. PMID:32045407
Adaptive selection in the evolution of programmed cell death-1 and its ligands in vertebrates. PMID:32045365
A rapid pyrosequencing assay for the molecular detection of influenza viruses with reduced baloxavir susceptibility due to PA/I38X amino acid substitutions. PMID:32045100
The evolution of protein domain repertoires: Shedding light on the origins of the Herpesviridae family. PMID:32042448
Targeted-Release Organic Acids and Essential Oils Improve Performance and Digestive Function in Broilers Under a Necrotic Enteritis Challenge. PMID:32041160
Molecular and Biological Characterization of the First Hypovirus Identified in Fusarium oxysporum. PMID:32038565
Genomics Evolutionary History and Diagnostics of the Alternaria alternata Species Group Including Apple and Asian Pear Pathotypes. PMID:32038562
Shifts Between and Among Populations of Wheat Rhizosphere Pseudomonas, Streptomyces and Phyllobacterium Suggest Consistent Phosphate Mobilization at Different Wheat Growth Stages Under Abiotic Stress. PMID:32038552
Community Assembly of Endophytic Fungi in Ectomycorrhizae of Betulaceae Plants at a Regional Scale. PMID:32038548
Prediction, Diversity, and Genomic Analysis of Temperate Phages Induced From Shiga Toxin-Producing Escherichia coli Strains. PMID:32038541
Evolutionary Histories of Type III Polyketide Synthases in Fungi. PMID:32038517
Identification and Comparative Analysis of Venom Proteins in a Pupal Ectoparasitoid, Pachycrepoideus vindemmiae. PMID:32038312
Microbiota composition modulates inflammation and neointimal hyperplasia after arterial angioplasty. PMID:32035769
Developmental and sexual divergence in the olfactory system of the marine insect Clunio marinus. PMID:32034235
De novo emergence of adaptive membrane proteins from thymine-rich genomic sequences. PMID:32034123
CRK2 and C-terminal Phosphorylation of NADPH Oxidase RBOHD Regulate Reactive Oxygen Species Production in Arabidopsis. PMID:32034035
Comparative Chloroplast Genomics of Endangered Euphorbia Species: Insights into Hotspot Divergence, Repetitive Sequence Variation, and Phylogeny. PMID:32033491
Succession and Colonization Dynamics of Endolithic Phototrophs within Intertidal Carbonates. PMID:32033409
Fungal and Bacterial Microbiome Associated with the Rhizosphere of Native Plants from the Atacama Desert. PMID:32033093
A first view on the unsuspected intragenus diversity of N-glycans in Chlorella microalgae. PMID:32031706
RNA processing machineries in Archaea: the 5'-3' exoribonuclease aRNase J of the β-CASP family is engaged specifically with the helicase ASH-Ski2 and the 3'-5' exoribonucleolytic RNA exosome machinery. PMID:32030412
A cross-sectional study to characterize local HIV-1 dynamics in Washington, DC using next-generation sequencing. PMID:32029767
Transmission dynamics and evolutionary history of 2019-nCoV. PMID:32027035
A chromosome-scale genome assembly of Isatis indigotica, an important medicinal plant used in traditional Chinese medicine: An Isatis genome. PMID:32025321
Influenza A Virus Field Surveillance at a Swine-Human Interface. PMID:32024713
The First Non-LRV RNA Virus in Leishmania. PMID:32024293
Pathogenomic Analysis of a Novel Extensively Drug-Resistant Citrobacter freundii Isolate Carrying a blaNDM-1 Carbapenemase in South Africa. PMID:32024012
Multigene phylogeny and taxonomy of Dendryphion hydei and Torula hydei spp. nov. from herbaceous litter in northern Thailand. PMID:32023268
An Ancient Baboon Genome Demonstrates Long-Term Population Continuity in Southern Africa. PMID:32022848
Structure and function of crocodilian hemoglobins and allosteric regulation by chloride, ATP, and CO2. PMID:32022587
Identification and characterization of ERV-W-like sequences in Platyrrhini species provides new insights into the evolutionary history of ERV-W in primates. PMID:32021657
Considerations on the taxonomy and morphology of Microcotyle spp.: redescription of M. erythrini van Beneden & Hesse, 1863 (sensu stricto) (Monogenea: Microcotylidae) and the description of a new species from Dentex dentex (L.) (Teleostei: Sparidae). PMID:32020879
Nanopore sequencing-based genome assembly and evolutionary genomics of circum-basmati rice. PMID:32019604
Negative frequency dependent selection contributes to the maintenance of a global polymorphism in mitochondrial DNA. PMID:32019493
DNA preserved in jetsam whale ambergris. PMID:32019465
A new coronavirus associated with human respiratory disease in China. PMID:32015508
Influence of sulfonated and diet-derived human milk oligosaccharides on the infant microbiome and immune markers. PMID:32014993
Discovery of several thousand highly diverse circular DNA viruses. PMID:32014111
Comparison of the Pathogenicity in Mice of A(H1N1)pdm09 Viruses Isolated between 2009 and 2015 in Japan. PMID:32013144
Molecular and biological analysis revealed genetic diversity and high virulence strain of Toxoplasma gondii in Japan. PMID:32012177
Macrofungal Survey of the Tian Shan Mountains, Kyrgyzstan. PMID:32010459
Macrolepiota in Korea: New Records and a New Species. PMID:32010458
Comparative Genomic Analysis Reveals the Mechanism Driving the Diversification of Plastomic Structure in Taxaceae Species. PMID:32010180
Molecular Evolution of the Fusion Protein (F) Gene in Human Respirovirus 3. PMID:32010105
Genomic Insights Into the Mycobacterium kansasii Complex: An Update. PMID:32010067
Predicting the spread-risk potential of chronic wasting disease to sympatric ungulate species. PMID:32008428
Hidden diversity in the Brazilian Atlantic rainforest: the discovery of Jurasaidae, a new beetle family (Coleoptera, Elateroidea) with neotenic females. PMID:32005908
RNAconTest: comparing tools for noncoding RNA multiple sequence alignment based on structural consistency. PMID:32005745
Basal hsp70 expression levels do not explain adaptive variation of the warm- and cold-climate O3 + 4 + 7 and OST gene arrangements of Drosophila subobscura. PMID:32005133
Full-genome evolutionary analysis of the novel corona virus (2019-nCoV) rejects the hypothesis of emergence as a result of a recent recombination event. PMID:32004758
Genome-scale data reveal the role of hybridization in lichen-forming fungi. PMID:32001749
Increasing prevalence of a fluoroquinolone resistance mutation amongst Campylobacter jejuni isolates from four human infectious intestinal disease studies in the United Kingdom. PMID:31999701
Pseudolebinthus lunipterus sp. nov.: a striking deaf and mute new cricket from Malawi (Orthoptera, Gryllidae, Eneopterinae). PMID:31998551
Tackling Rapid Radiations With Targeted Sequencing. PMID:31998342
Molecular evidences confirm the taxonomic separation of two sympatric congeneric species (Mollusca, Gastropoda, Neritidae, Neritina). PMID:31997892
Potential of large "first generation" human-to-human transmission of 2019-nCoV. PMID:31997390
Influence of Substrate Concentration on the Culturability of Heterotrophic Soil Microbes Isolated by High-Throughput Dilution-to-Extinction Cultivation. PMID:31996418
100 Ma sweat bee nests: Early and rapid co-diversification of crown bees and flowering plants. PMID:31995815
Dictyosphaerium-like morphotype in terrestrial algae: what is Xerochlorella (Trebouxiophyceae, Chlorophyta)?1. PMID:31994728
Natronorubrum halophilum sp. nov. isolated from two inland salt lakes. PMID:31993986
A novel taxon selection method, aimed at minimizing recombination, clarifies the discovery of a new sub-population of Helicobacter pylori from Australia. PMID:31993076
Molecular Evolution of the Protease Region in Norovirus Genogroup II. PMID:31993031
The protandric life history of the Northern spot shrimp Pandalus platyceros: molecular insights and implications for fishery management. PMID:31992795
Exploring the therapeutic potential of modern and ancestral phenylalanine/tyrosine ammonia-lyases as supplementary treatment of hereditary tyrosinemia. PMID:31992763
The round goby genome provides insights into mechanisms that may facilitate biological invasions. PMID:31992286
Recurrent mutualism breakdown events in a legume rhizobia metapopulation. PMID:31992172
Virus Discovery in Desert Tortoise Fecal Samples: Novel Circular Single-Stranded DNA Viruses. PMID:31991902
Structural evolution drives diversification of the large LRR-RLK gene family. PMID:31990988
Characterization of sequence variability hotspots in Cranichideae plastomes (Orchidaceae, Orchidoideae). PMID:31990943
Distinct temporal diversity profiles for nitrogen cycling genes in a hyporheic microbiome. PMID:31986180
Acidithiobacillus ferrianus sp. nov.: an ancestral extremely acidophilic and facultatively anaerobic chemolithoautotroph. PMID:31980944
Identification of putative neuropeptidergic signaling systems in the spiny lobster, Panulirus argus. PMID:31980901
Ostreopsis cf. ovata (Dinophyceae) Molecular Phylogeny, Morphology, and Detection of Ovatoxins in Strains and Field Samples from Brazil. PMID:31979144
Unusual genome expansion and transcription suppression in ectomycorrhizal Tricholoma matsutake by insertions of transposable elements. PMID:31978083
Makorin 1 controls embryonic patterning by alleviating Bruno1-mediated repression of oskar translation. PMID:31978041
The mitochondrial genome of Apion squamigerum (Coleoptera, Curculionoidea, Brentidae) and the phylogenetic implications. PMID:31976182
Fungal Systematics and Evolution: FUSE 5. PMID:31975743
The C. difficile toxin B membrane translocation machinery is an evolutionarily conserved protein delivery apparatus. PMID:31974369
Comparative Chloroplast Genomics of Fritillaria (Liliaceae), Inferences for Phylogenetic Relationships between Fritillaria and Lilium and Plastome Evolution. PMID:31973113
Molecular Evolution of the Glutathione S-Transferase Family in the Bemisia tabaci Species Complex. PMID:31971586
The Genome of the Great Gerbil Reveals Species-Specific Duplication of an MHCII Gene. PMID:31971556
Evaluation of Genotypic Antiviral Resistance Testing as an Alternative to Phenotypic Testing in a Patient with DOCK8 Deficiency and Severe HSV-1 Disease. PMID:31970398
Persistent Infection of Simian Foamy Virus Derived from the Japanese Macaque Leads to the High-Level Expression of microRNA that Resembles the miR-1 microRNA Precursor Family. PMID:31969530
The Unique Antimicrobial Recognition and Signaling Pathways in Tardigrades with a Comparison Across Ecdysozoa. PMID:31969428
Phylogenetic Analysis and Substitution Rate Estimation of Colonial Volvocine Algae Based on Mitochondrial Genomes. PMID:31968709
Identification of A Novel Papillomavirus Associated with Squamous Cell Carcinoma in A Domestic Cat. PMID:31968684
Structural Insights into the Unique Activation Mechanisms of a Non-classical Calpain and Its Disease-Causing Variants. PMID:31968260
Cross-species transmission of the newly identified coronavirus 2019-nCoV. PMID:31967321
3D revelation of phenotypic variation, evolutionary allometry, and ancestral states of corolla shape: a case study of clade Corytholoma (subtribe Ligeriinae, family Gesneriaceae). PMID:31967295
Regenerative Capacity of the Upside-down Jellyfish Cassiopea xamachana. PMID:31966338
Description of A New Species of Freshwater Crab of the Genus Qianguimon Huang, 2018 (Crustacea: Decapoda: Brachyura: Potamidae) from Yulin, Guangxi, Southern China. PMID:31966332
Comprehensive Analysis of the Jellyfish Chrysaora pacifica (Goette, 1886) (Semaeostomeae: Pelagiidae) with Description of the Complete rDNA Sequence. PMID:31966291
Mining histone methyltransferases and demethylases from whole genome sequence. PMID:31965987
Four high-quality draft genome assemblies of the marine heterotrophic nanoflagellate Cafeteria roenbergensis. PMID:31964893
Functional variants of DOG1 control seed chilling responses and variation in seasonal life-history strategies in Arabidopsis thaliana. PMID:31964817
How Bacterial Chemoreceptors Evolve Novel Ligand Specificities. PMID:31964737
Bacterial Taxa and Functions Are Predictive of Sustained Remission Following Exclusive Enteral Nutrition in Pediatric Crohn's Disease. PMID:31961432
Independent domestication events in the blue-cheese fungus Penicillium roqueforti. PMID:31960565
Seasonal epiphytic microbial dynamics on grapevine leaves under biocontrol and copper fungicide treatments. PMID:31959791
Genomic Analysis of Wolbachia from Laodelphax striatellus (Delphacidae, Hemiptera) Reveals Insights into Its "Jekyll and Hyde" Mode of Infection Pattern. PMID:31958110
Detection and molecular characterization of Cryptosporidium species in wild-caught pet spiny-tailed lizards. PMID:31956481
Delineating the Rules for Structural Adaptation of Membrane-Associated Proteins to Evolutionary Changes in Membrane Lipidome. PMID:31956022
Stepwise evolution and convergent recombination underlie the global dissemination of carbapenemase-producing Escherichia coli. PMID:31955713
Toc75-V/OEP80 is processed during translocation into chloroplasts, and the membrane-embedded form exposes its POTRA domain to the intermembrane space. PMID:31953987
Signature of adaptive evolution in olfactory receptor genes in Cory's Shearwater supports molecular basis for smell in procellariiform seabirds. PMID:31953474
Reporter Assays for Ebola Virus Nucleoprotein Oligomerization, Virion-Like Particle Budding, and Minigenome Activity Reveal the Importance of Nucleoprotein Amino Acid Position 111. PMID:31952352
Comparative Genomic Analysis of Rhodococcus equi: An Insight into Genomic Diversity and Genome Evolution. PMID:31950028
Phylogenetic informativeness analyses to clarify past diversification processes in Cucurbitaceae. PMID:31949198
If host is refractory, insistent parasite goes berserk: Trypanosomatid Blastocrithidia raabei in the dock bug Coreus marginatus. PMID:31945116
Phosphatase POPX2 interferes with cell cycle by interacting with Chk1. PMID:31944151
tRNA 2'-O-methylation by a duo of TRM7/FTSJ1 proteins modulates small RNA silencing in Drosophila. PMID:31943105
Analysis of the RNA virome of basal hexapods. PMID:31942257
Isolation of an archaeon at the prokaryote-eukaryote interface. PMID:31942073
Immunophenotyping monocytes, macrophages and granulocytes in the Pteropodid bat Eonycteris spelaea. PMID:31941952
Whole-Genome-Sequence-Based Characterization of Extensively Drug-Resistant Acinetobacter baumannii Hospital Outbreak. PMID:31941816
CER16 Inhibits Post-Transcriptional Gene Silencing of CER3 to Regulate Alkane Biosynthesis. PMID:31941670
Genome-resolved metagenomics analysis provides insights into the ecological role of Thaumarchaeota in the Amazon River and its plume. PMID:31941452
Genlisea hawkingii (Lentibulariaceae), a new species from Serra da Canastra, Minas Gerais, Brazil. PMID:31940359
Molecular profiling of nematode associates with Rhynchophorus ferrugineus in southern Italy. PMID:31938519
Distinct but Intertwined Evolutionary Histories of Multiple Salmonella enterica Subspecies. PMID:31937675
A thirteen-million-year divergence between two lineages of Indonesian coelacanths. PMID:31932637
The evolution of sexual signaling is linked to odorant receptor tuning in perfume-collecting orchid bees. PMID:31932598
Clonorchis sinensis MF6p/HDM (CsMF6p/HDM) induces pro-inflammatory immune response in RAW 264.7 macrophage cells via NF-κB-dependent MAPK pathways. PMID:31931867
A competence-regulated toxin-antitoxin system in Haemophilus influenzae. PMID:31931516
TaWAK6 encoding wall-associated kinase is involved in wheat resistance to leaf rust similar to adult plant resistance. PMID:31929605
Phylogeographic analyses point to long-term survival on the spot in micro-endemic Lycian salamanders. PMID:31929551
Ithyoclinostomum yamagutii n. sp. (Digenea: Clinostomidae) in the great blue heron Ardea herodias L. (Aves: Ardeidae) from Mississippi, USA. PMID:31927705
Insights into the strategy of micro-environmental adaptation: Transcriptomic analysis of two alvinocaridid shrimps at a hydrothermal vent. PMID:31923275
Target Capture Sequencing Unravels Rubus Evolution. PMID:31921259
Bacterial Tradeoffs in Growth Rate and Extracellular Enzymes. PMID:31921094
Changes in Microbiota Across Developmental Stages of Aedes koreicus, an Invasive Mosquito Vector in Europe: Indications for Microbiota-Based Control Strategies. PMID:31921019
The Compositionally Distinct Cyanobacterial Biocrusts From Brazilian Savanna and Their Environmental Drivers of Community Diversity. PMID:31921007
Gene fragmentation and RNA editing without borders: eccentric mitochondrial genomes of diplonemids. PMID:31919519
Controlled sampling of ribosomally active protistan diversity in sediment-surface layers identifies putative players in the marine carbon sink. PMID:31919469
Basidioradulum mayi and B. tasmanicum spp. nov. (Hymenochaetales, Basidiomycota) from both sides of Bass Strait, Australia. PMID:31919462
Genome Evolution in Arabideae Was Marked by Frequent Centromere Repositioning. PMID:31919297
Coding-Complete Genome Sequence of Yada Yada Virus, a Novel Alphavirus Detected in Australian Mosquitoes. PMID:31919150
Long live the king: chromosome-level assembly of the lion (Panthera leo) using linked-read, Hi-C, and long-read data. PMID:31915011
Molecular characterisation of acanthocephalans from Australian marine teleosts: proposal of a new family, synonymy of another and transfer of taxa between orders. PMID:31912420
Structure of Drosophila melanogaster ARC1 reveals a repurposed molecule with characteristics of retroviral Gag. PMID:31911950
RNA isoform screens uncover the essentiality and tumor-suppressor activity of ultraconserved poison exons. PMID:31911676
Long-read sequencing reveals genomic structural variations that underlie creation of quality protein maize. PMID:31911615
Neoproterozoic origin and multiple transitions to macroscopic growth in green seaweeds. PMID:31911467
Mitochondrial localization of Dictyostelium discoideum dUTPase mediated by its N-terminus. PMID:31910901
CrABCA2 Facilitates Triacylglycerol Accumulation in Chlamydomonas reinhardtii under Nitrogen Starvation. PMID:31910336
Horizontal Gene Transfer of Short-Chain Dehydrogenase Coding Genes Contribute to the Biofilm Formation and Pathogenicity on Mycobacterium grossiae sp. nov. PB739T (=DSM 104744T). PMID:31907602
Nodal paralogues underlie distinct mechanisms for visceral left-right asymmetry in reptiles and mammals. PMID:31907383
Evidence for phylogenetically and catabolically diverse active diazotrophs in deep-sea sediment. PMID:31907368
Whole genome sequencing of Borrelia miyamotoi isolate Izh-4: reference for a complex bacterial genome. PMID:31906865
Complete Chloroplast Genome of Paphiopedilum delenatii and Phylogenetic Relationships among Orchidaceae. PMID:31906501
Identification and characterisation of common glow-worm RNA viruses. PMID:31900852
Wolbachia Endosymbiont of the Horn Fly (Haematobia irritans irritans): a Supergroup A Strain with Multiple Horizontally Acquired Cytoplasmic Incompatibility Genes. PMID:31900308
Whole genome sequencing and phylogenetic analysis of human metapneumovirus strains from Kenya and Zambia. PMID:31898474
Molecular phylogeny of Eupodidae reveals that the family Cocceupodidae (Actinotrichida; Eupodoidea) and its genus Filieupodes are valid taxa. PMID:31894442
A benchmark of transposon insertion detection tools using real data. PMID:31892957
Characterization of the complete chloroplast genome sequence of Dalbergia species and its phylogenetic implications. PMID:31892714
Duplication and parallel evolution of the pancreatic ribonuclease gene (RNASE1) in folivorous non-colobine primates, the howler monkeys (Alouatta spp.). PMID:31889139
AliClu - Temporal sequence alignment for clustering longitudinal clinical data. PMID:31888660
LMAP_S: Lightweight Multigene Alignment and Phylogeny eStimation. PMID:31888452
Genome-Wide Analysis of Cyclophilin Proteins in 21 Oomycetes. PMID:31888032
Novel RNA viruses associated with Plasmodium vivax in human malaria and Leucocytozoon parasites in avian disease. PMID:31887217
Hierarchical Hybrid Enrichment: Multitiered Genomic Data Collection Across Evolutionary Scales, With Application to Chorus Frogs (Pseudacris). PMID:31886503
Calcium exerts a strong influence upon phosphohydrolase gene abundance and phylogenetic diversity in soil. PMID:31885404
Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species. PMID:31883524
High prevalence and genetic diversity of Haemoproteus columbae (Haemosporida: Haemoproteidae) in feral pigeons Columba livia in Cape Town, South Africa. PMID:31883048
A genome-skimmed phylogeny of a widespread bryozoan family, Adeonidae. PMID:31881939
Type IV CRISPR-Cas systems are highly diverse and involved in competition between plasmids. PMID:31879772
Characterization and comparative analysis of the complete chloroplast genome sequence from Prunus avium 'Summit'. PMID:31879574
Additions to Chaetothyriaceae (Chaetothyriales): Longihyalospora gen. nov. and Ceramothyrium longivolcaniforme, a new host record from decaying leaves of Ficus ampelas. PMID:31879525
Analysis of NAC Domain Transcription Factor Genes of Tectona grandis L.f. Involved in Secondary Cell Wall Deposition. PMID:31878092
Prevalence of Non-B HIV-1 Subtypes in North Italy and Analysis of Transmission Clusters Based on Sequence Data Analysis. PMID:31878069
DNA Barcoding Subtropical Aphids and Implications for Population Differentiation. PMID:31877643
Tat IRES modulator of tat mRNA (TIM-TAM): a conserved RNA structure that controls Tat expression and acts as a switch for HIV productive and latent infection. PMID:31875221
Comparative analysis of microbiota along the length of the gastrointestinal tract of two tree squirrel species (Sciurus aberti and S. niger) living in sympatry. PMID:31871649
MYB20, MYB42, MYB43, and MYB85 Regulate Phenylalanine and Lignin Biosynthesis during Secondary Cell Wall Formation. PMID:31871072
Genetic determinants of genus-level glycan diversity in a bacterial protein glycosylation system. PMID:31869330
Deep Residual Neural Networks Resolve Quartet Molecular Phylogenies. PMID:31868908
Towards Improved Molecular Identification Tools in Fine Fescue (Festuca L., Poaceae) Turfgrasses: Nuclear Genome Size, Ploidy, and Chloroplast Genome Sequencing. PMID:31867041
Comparative Genomic Analysis of Citrobacter and Key Genes Essential for the Pathogenicity of Citrobacter koseri. PMID:31866966
A novel sequestrate species from Mexico: Aroramyces guanajuatensis sp. nov. (Hysterangiaceae, Hysterangiales). PMID:31866740
Mutant analysis in the nonlegume Parasponia andersonii identifies NIN and NF-YA1 transcription factors as a core genetic network in nitrogen-fixing nodule symbioses. PMID:31863481
Subdivision of Light Signaling Networks Contributes to Partitioning of C4 Photosynthesis. PMID:31862840
Prevalence and Implications of Contamination in Public Genomic Resources: A Case Study of 43 Reference Arthropod Assemblies. PMID:31862787
Topical Application of Adult Cecal Contents to Eggs Transplants Spore-Forming Microbiota but Not Other Members of the Microbiota to Chicks. PMID:31862722
Comparative Pangenomics of the Mammalian Gut Commensal Bifidobacterium longum. PMID:31861401
Whole Genome Sequencing and Assembly of the Asian Honey Bee Apis dorsata. PMID:31860080
Gyrodactylus magadiensis n. sp. (Monogenea, Gyrodactylidae) parasitising the gills of Alcolapia grahami (Perciformes, Cichlidae), a fish inhabiting the extreme environment of Lake Magadi, Kenya. PMID:31859621
A diverse uncultivated microbial community is responsible for organic matter degradation in the Black Sea sulphidic zone. PMID:31858660
Variation in plastid genomes in the gynodioecious species Silene vulgaris. PMID:31856730
Sequence analyses at mitochondrial and nuclear loci reveal a novel Theileria sp. and aid in the phylogenetic resolution of piroplasms from Australian marsupials and ticks. PMID:31851687
Contribution of Functional Divergence Through Copy Number Variations to the Inter-Species and Intra-Species Diversity in Specialized Metabolites. PMID:31850041
A Phylogenomic Analysis of the Floral Transcriptomes of Sexually Deceptive and Rewarding European Orchids, Ophrys and Gymnadenia. PMID:31850034
OXA-830, a Novel Chromosomally Encoded Extended-Spectrum Class D β-Lactamase in Aeromonas simiae. PMID:31849884
Characteristics of Wetting-Induced Bacteriophage Blooms in Biological Soil Crust. PMID:31848272
Analysis of EYA3 Phosphorylation by Src Kinase Identifies Residues Involved in Cell Proliferation. PMID:31847183
Necrotizing enterocolitis is preceded by increased gut bacterial replication, Klebsiella, and fimbriae-encoding bacteria. PMID:31844663
The genus Massalongia (lichenised ascomycetae) in the Southern Hemisphere. PMID:31844414
Retroviruses drive the rapid evolution of mammalian APOBEC3 genes. PMID:31843890
Identification of a distinct desensitisation gate in the ATP-gated P2X2 receptor. PMID:31843194
Biological attributes of the kissing bug Triatoma rubrofasciata from Vietnam. PMID:31842951
SimSpliceEvol: alternative splicing-aware simulation of biological sequence evolution. PMID:31842741
Convergent degeneration of olfactory receptor gene repertoires in marine mammals. PMID:31842731
Whole genome sequencing and novel candidate genes for CAKUT and altered nephrogenesis in the HSRA rat. PMID:31841396
New bobtail squid (Sepiolidae: Sepiolinae) from the Ryukyu islands revealed by molecular and morphological analysis. PMID:31840110
Amino acid exchangeabilities vary across the tree of life. PMID:31840062
Emission and biosynthesis of volatile terpenoids from the plasmodial slime mold Physarum polycephalum. PMID:31839833
Oxygenation properties of hemoglobin and the evolutionary origins of isoform multiplicity in an amphibious air-breathing fish, the blue-spotted mudskipper (Boleophthalmus pectinirostris). PMID:31836650
Profusion of G-quadruplexes on both subunits of metazoan ribosomes. PMID:31834895
Parental origin of the allotetraploid tobacco Nicotiana benthamiana. PMID:31833111
AcetoBase: a functional gene repository and database for formyltetrahydrofolate synthetase sequences. PMID:31832668
Swift evolutionary response of microbes to a rise in anthropogenic mercury in the Northern Hemisphere. PMID:31831837
Comprehensive analysis of chromosomal mobile genetic elements in the gut microbiome reveals phylum-level niche-adaptive gene pools. PMID:31830054
Morphology is not a reliable taxonomic tool for the genus Lernaea: molecular data and experimental infection reveal that L. cyprinacea and L. cruciata are conspecific. PMID:31829242
Phylogenetic analysis of ABCG subfamily proteins in plants: functional clustering and coevolution with ABCGs of pathogens. PMID:31828796
Differences in the intestinal microbiome of healthy children and patients with newly diagnosed Crohn's disease. PMID:31827191
Tempo and mode of allopatric divergence in the weakly electric fish Sternopygus dariensis in the Isthmus of Panama. PMID:31827183
Phagocytosis-like cell engulfment by a planctomycete bacterium. PMID:31827088
Microsporidia with Vertical Transmission Were Likely Shaped by Nonadaptive Processes. PMID:31825473
Warm temperatures, cool sponges: the effect of increased temperatures on the Antarctic sponge Isodictya sp. PMID:31824760
Phylogenetic re-evaluation of Thielavia with the introduction of a new family Podosporaceae. PMID:31824584
Whole Genome Assembly of the Snout Otter Clam, Lutraria rhynchaena, Using Nanopore and Illumina Data, Benchmarked Against Bivalve Genome Assemblies. PMID:31824566
Analyses of Plastome Sequences Improve Phylogenetic Resolution and Provide New Insight Into the Evolutionary History of Asian Sonerileae/Dissochaeteae. PMID:31824528
Taxonomy and phylogeny of the Leptographium olivaceum complex (Ophiostomatales, Ascomycota), including descriptions of six new species from China and Europe. PMID:31824211
The Pseudomonas aeruginosa accessory genome elements influence virulence towards Caenorhabditis elegans. PMID:31823826
Diversity, evolution, and classification of virophages uncovered through global metagenomics. PMID:31823797
Integrative systematics and ecology of a new deep-sea family of tanaidacean crustaceans. PMID:31822695
Hermetia illucens in diets for zebrafish (Danio rerio): A study of bacterial diversity by using PCR-DGGE and metagenomic sequencing. PMID:31821372
Phylogenomics provides robust support for a two-domains tree of life. PMID:31819234
Genome investigations show host adaptation and transmission of LA-MRSA CC398 from pigs into Danish healthcare institutions. PMID:31819134
Complete plastid genome of Suriana maritima L. (Surianaceae) and its implications in phylogenetic reconstruction of Fabales. PMID:31819026
Mitogenome analysis of dwarf pufferfish (Carinotetraodon travancoricus) endemic to southwest India and its implications in the phylogeny of Tetraodontidae. PMID:31819020
Antifungal Triazole Posaconazole Targets an Early Stage of the Parechovirus A3 Life Cycle. PMID:31818821
A Simple Method for Sample Preparation to Facilitate Efficient Whole-Genome Sequencing of African Swine Fever Virus. PMID:31817647
Natural Infection of Aedes aegypti by Chikungunya and Dengue type 2 Virus in a Transition Area of North-Northeast Brazil. PMID:31817553
Co-Isolation and Characterization of Two Pandoraviruses and a Mimivirus from a Riverbank in Japan. PMID:31817274
Genomic Diversity of Common Sequence Types of Listeria monocytogenes Isolated from Ready-to-Eat Products of Animal Origin in South Africa. PMID:31817243
Diversity of A(H5N1) clade 2.3.2.1c avian influenza viruses with evidence of reassortment in Cambodia, 2014-2016. PMID:31815962
The evolution and genetic diversity of avian influenza A(H9N2) viruses in Cambodia, 2015 - 2016. PMID:31815945
LCO Receptors Involved in Arbuscular Mycorrhiza Are Functional for Rhizobia Perception in Legumes. PMID:31813608
Novel genotypes and multilocus genotypes of Enterocytozoon bieneusi in two wild rat species in China: potential for zoonotic transmission. PMID:31811423
Crocodilepox Virus Evolutionary Genomics Supports Observed Poxvirus Infection Dynamics on Saltwater Crocodile (Crocodylus porosus). PMID:31810339
Paenibacillus lutrae sp. nov., A Chitinolytic Species Isolated from A River Otter in Castril Natural Park, Granada, Spain. PMID:31810255
De Novo Genome Assembly of Populus simonii Further Supports That Populus simonii and Populus trichocarpa Belong to Different Sections. PMID:31806765
Plastome phylogenomics, biogeography, and clade diversification of Paris (Melanthiaceae). PMID:31805856
Complete Mitogenome of a Leaf-Mining Buprestid Beetle, Trachys auricollis, and Its Phylogenetic Implications. PMID:31805706
Genetic and morphological divergence in the warm-water planktonic foraminifera genus Globigerinoides. PMID:31805130
Phylogenetic analysis of the hemagglutinin gene of influenza A(H1N1)pdm09 and A(H3N2) virus isolates from Haryana, India. PMID:31803799
Whole Plastome Sequencing Within Silene Section Psammophilae Reveals Mainland Hybridization and Divergence With the Balearic Island Populations. PMID:31803208
Cryptic intermediate snail host of the liver fluke Fasciola hepatica in Africa. PMID:31801595
Genetic variation associated with infection and the environment in the accidental pathogen Burkholderia pseudomallei. PMID:31799430
New skulls and skeletons of the Cretaceous legged snake Najash, and the evolution of the modern snake body plan. PMID:31799393
New insights into Sauropsid Papillomaviridae evolution and epizootiology: discovery of two novel papillomaviruses in native and invasive Island geckos. PMID:31798966
Genome-Wide Variation in Potyviruses. PMID:31798606
Whole-genome comparison between the type strain of Halobacterium salinarum (DSM 3754T ) and the laboratory strains R1 and NRC-1. PMID:31797576
Population genetic structure and phylogenetic analysis of gray's pipefish, Halicampus grayi in the South China Sea. PMID:31797312
Genotyping by Sequencing of Acanthamoeba and Naegleria Isolates from the Thermal Pool Distributed Throughout Turkey. PMID:31797194
The C-Fern (Ceratopteris richardii) genome: insights into plant genome evolution with the first partial homosporous fern genome assembly. PMID:31796775
Uncovering the Diversity and Activity of Methylotrophic Methanogens in Freshwater Wetland Soils. PMID:31796563
Genomic and evolutionary features of two AHPND positive Vibrio parahaemolyticus strains isolated from shrimp (Penaeus monodon) of south-west Bangladesh. PMID:31796006
Identification of four unconventional kinetoplastid kinetochore proteins KKT22-25 in Trypanosoma brucei. PMID:31795916
Marine Bacteria from Rocas Atoll as a Rich Source of Pharmacologically Active Compounds. PMID:31795148
Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea. PMID:31792218
Molecular and evolutionary characterization of norovirus GII.17 in the northern region of Brazil. PMID:31791261
Unravelling the phylogeny, cryptic diversity and morphological evolution of Diptilomiopus mites (Acari: Eriophyoidea). PMID:31786687
Programmed DNA elimination of germline development genes in songbirds. PMID:31784533
Rapid, large-scale species discovery in hyperdiverse taxa using 1D MinION sequencing. PMID:31783752
Factors determining microbial colonization of liquid nitrogen storage tanks used for archiving biological samples. PMID:31781817
Evolution of the Genes Encoding Effector Candidates Within Multiple Pathotypes of Magnaporthe oryzae. PMID:31781071
Root-Colonizing Endophytic Fungi of the Dominant Grass Stipa krylovii From a Mongolian Steppe Grassland. PMID:31781068
The mitochondrial genomes of palaeopteran insects and insights into the early insect relationships. PMID:31780743
Species Identification of Oaks (Quercus L., Fagaceae) from Gene to Genome. PMID:31779118
The Genome of the Blind Soil-Dwelling and Ancestrally Wingless Dipluran Campodea augens: A Key Reference Hexapod for Studying the Emergence of Insect Innovations. PMID:31778187
A single amino acid switch converts the Sleeping Beauty transposase into an efficient unidirectional excisionase with utility in stem cell reprogramming. PMID:31777924
Identification and evolution of avian endogenous foamy viruses. PMID:31777663
Genetic Diversity, Compartmentalization, and Age of HIV Proviruses Persisting in CD4+ T Cell Subsets during Long-Term Combination Antiretroviral Therapy. PMID:31776273
Calcium sensing via EF-hand 4 enables thioredoxin activity in the sensor-responder protein calredoxin in the green alga Chlamydomonas reinhardtii. PMID:31776187
Deltaretroviruses have circulated since at least the Paleogene and infected a broad range of mammalian species. PMID:31775783
Diversity and Evolution of Novel Invertebrate DNA Viruses Revealed by Meta-Transcriptomics. PMID:31775324
Detection of Abrin-Like and Prepropulchellin-Like Toxin Genes and Transcripts Using Whole Genome Sequencing and Full-Length Transcript Sequencing of Abrus precatorius. PMID:31775284
An N-terminal motif in NLR immune receptors is functionally conserved across distantly related plant species. PMID:31774397
Novel redox-active enzymes for ligninolytic applications revealed from multiomics analyses of Peniophora sp. CBMAI 1063, a laccase hyper-producer strain. PMID:31772294
The in vivo ISGylome links ISG15 to metabolic pathways and autophagy upon Listeria monocytogenes infection. PMID:31772204
An MPER antibody neutralizes HIV-1 using germline features shared among donors. PMID:31772165
Metatranscriptomic reconstruction reveals RNA viruses with the potential to shape carbon cycling in soil. PMID:31772013
Paradoxical clade- and age-specific vaccine effectiveness during the 2018/19 influenza A(H3N2) epidemic in Canada: potential imprint-regulated effect of vaccine (I-REV). PMID:31771709
Genome-wide identification and characterization of the GDP-L-galactose phosphorylase gene family in bread wheat. PMID:31771507
SNAPPy: A snakemake pipeline for scalable HIV-1 subtyping by phylogenetic pairing. PMID:31768265
Psychoactive plant- and mushroom-associated alkaloids from two behavior modifying cicada pathogens. PMID:31768192
A computational framework to explore large-scale biosynthetic diversity. PMID:31768033
Wolbachia supplement biotin and riboflavin to enhance reproduction in planthoppers. PMID:31767943
Persistence of single species of symbionts across multiple closely-related host species. PMID:31767919
An Endophytic Diaporthe apiculatum Produces Monoterpenes with Inhibitory Activity against Phytopathogenic Fungi. PMID:31766670
Delmarva (DMV/1639) Infectious Bronchitis Virus (IBV) Variants Isolated in Eastern Canada Show Evidence of Recombination. PMID:31766215
Complete Chloroplast Genomes of Vachellia nilotica and Senegalia senegal: Comparative Genomics and Phylogenomic Placement in a New Generic System. PMID:31765416
A Shift in Porcine Circovirus 3 (PCV-3) History Paradigm: Phylodynamic Analyses Reveal an Ancient Origin and Prolonged Undetected Circulation in the Worldwide Swine Population. PMID:31763138
Using multilocus approach to uncover cryptic diversity within Pseudotrapelus lizards from Saudi Arabia. PMID:31762607
An Escherichia coli ST131 pangenome atlas reveals population structure and evolution across 4,071 isolates. PMID:31758048
Size increase without genetic divergence in the Eurasian water shrew Neomys fodiens. PMID:31758027
A Mesophilic Aeromonas salmonicida Strain Isolated from an Unsuspected Host, the Migratory Bird Pied Avocet. PMID:31757113
Evolution of Aspergillus oryzae before and after domestication inferred by large-scale comparative genomic analysis. PMID:31755931
The apricot (Prunus armeniaca L.) genome elucidates Rosaceae evolution and beta-carotenoid synthesis. PMID:31754435
Function-driven single-cell genomics uncovers cellulose-degrading bacteria from the rare biosphere. PMID:31754206
Deep ocean seascape and Pseudotanaidae (Crustacea: Tanaidacea) diversity at the Clarion-Clipperton Fracture Zone. PMID:31754124
Sequencing of animal viruses: quality data assurance for NGS bioinformatics. PMID:31752912
Phylogeny of Anoxygenic Photosynthesis Based on Sequences of Photosynthetic Reaction Center Proteins and a Key Enzyme in Bacteriochlorophyll Biosynthesis, the Chlorophyllide Reductase. PMID:31752268
Gene Duplication Accelerates the Pace of Protein Gain and Loss from Plant Organelles. PMID:31750917
Oral microbial community composition is associated with pancreatic cancer: A case-control study in Iran. PMID:31750624
Adenine·cytosine substitutions are an alternative pathway of compensatory mutation in angiosperm ITS2. PMID:31748405
Gene Regulation Shifts Shed Light on Fungal Adaption in Plant Biomass Decomposers. PMID:31744914
A ligand-independent origin of abscisic acid perception. PMID:31744875
Genome-Wide Identification and Characterization of ABC Transporters in Nine Rosaceae Species Identifying MdABCG28 as a Possible Cytokinin Transporter linked to Dwarfing. PMID:31744249
LmxM.22.0250-Encoded Dual Specificity Protein/Lipid Phosphatase Impairs Leishmania mexicana Virulence In Vitro. PMID:31744234
Multiple Lineages of Usutu Virus (Flaviviridae, Flavivirus) in Blackbirds (Turdus merula) and Mosquitoes (Culex pipiens, Cx. modestus) in the Czech Republic (2016-2019). PMID:31744087
Phylogenetic revision of the psammophilic Trogloderus LeConte (Coleoptera: Tenebrionidae), with biogeographic implications for the Intermountain Region. PMID:31741795
Breast milk-derived human milk oligosaccharides promote Bifidobacterium interactions within a single ecosystem. PMID:31740752
Ciliary force-responsive striated fibers promote basal body connections and cortical interactions. PMID:31740506
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi. PMID:31739792
Morphological and molecular identification of epibiontic sessilid Epistylis semiciculus n. sp. (ciliophora, Peritrichia) from Procambarus clarkia (Crustacea, Decapoda) in China. PMID:31737486
Dinucleotide evolutionary dynamics in influenza A virus. PMID:31737288
Molecular epidemiology of Clostridium neonatale and its relationship with the occurrence of necrotizing enterocolitis in preterm neonates. PMID:31737279
Evolutionary Conservation of the Orchid MYB Transcription Factors DIV, RAD, and DRIF. PMID:31736999
Efficient In Vivo Screening Method for the Identification of C4 Photosynthesis Inhibitors Based on Cell Suspensions of the Single-Cell C4 Plant Bienertia sinuspersici. PMID:31736996
Complex Class 1 Integron in a Clinical Escherichia coli Strain From Vietnam Carrying Both mcr-1 and bla NDM-1. PMID:31736911
Human mitochondrial DNA lineages in Iron-Age Fennoscandia suggest incipient admixture and eastern introduction of farming-related maternal ancestry. PMID:31729399
A new species of Myxobolus (Myxozoa: Bivalvulida) infecting the medulla oblongata and nerve cord of brook trout Salvelinus fontinalis in southern Appalachia (New River, NC, USA). PMID:31728722
Genome Sequences of Human Coronavirus OC43 and NL63, Associated with Respiratory Infections in Kilifi, Kenya. PMID:31727697
OrthoFinder: phylogenetic orthology inference for comparative genomics. PMID:31727128
Comparative transcriptomics in Syllidae (Annelida) indicates that posterior regeneration and regular growth are comparable, while anterior regeneration is a distinct process. PMID:31726983
Molecular epidemiological characteristics of dengue virus carried by 34 patients in Guangzhou in 2018. PMID:31725752
Development and validation of rapid environmental DNA (eDNA) detection methods for bog turtle (Glyptemys muhlenbergii). PMID:31725720
A four-locus phylogeny of rib-stiped cupulate species of Helvella (Helvellaceae, Pezizales) with discovery of three new species. PMID:31723337
Impact of Antiretroviral Therapy Duration on HIV-1 Infection of T Cells within Anatomic Sites. PMID:31723024
Evolutionary balance between LRR domain loss and young NBS-LRR genes production governs disease resistance in Arachis hypogaea cv. Tifrunner. PMID:31722670
Transcriptomic and evolutionary analysis of the mechanisms by which P. argentatum, a rubber producing perennial, responds to drought. PMID:31722667
The effects of soil phosphorus content on plant microbiota are driven by the plant phosphate starvation response. PMID:31721759
A morphological, molecular, and histopathological redescription of Henneguya nyongensis Fomena & Bouix, 1996 (Cnidaria: Myxobolidae) infecting the gills of Peter's elephantnose fish, Gnathonemus petersii (Günther) (Osteoglossiformes: Mormyridae), imported from Nigeria. PMID:31721045
Evaluation of variation within the barcode region of Cytochrome c Oxidase I (COI) for the detection of commercial Callinectes sapidus Rathbun, 1896 (blue crab) products of non-US origin. PMID:31720100
Meta-16S rRNA Gene Phylogenetic Reconstruction Reveals the Astonishing Diversity of Cosmopolitan Myxobacteria. PMID:31717918
Genomic Insights into the Carbon and Energy Metabolism of a Thermophilic Deep-Sea Bacterium Deferribacter autotrophicus Revealed New Metabolic Traits in the Phylum Deferribacteres. PMID:31717820
Ciliate Environmental Diversity Can Be Underestimated by the V4 Region of SSU rDNA: Insights from Species Delimitation and Multilocus Phylogeny of Pseudokeronopsis (Protist, Ciliophora). PMID:31717798
Unraveling the Genetic Structure of the Coconut Scale Insect Pest (Aspidiotus rigidus Reyne) Outbreak Populations in the Philippines. PMID:31717772
Riding the Wave: The SINE-Specific V Highly-Conserved Domain Spread into Mammalian Genomes Exploiting the Replication Burst of the MER6 DNA Transposon. PMID:31717545
Seasonal Dynamics of Algae-Infecting Viruses and Their Inferred Interactions with Protists. PMID:31717498
In Silico Study of Rett Syndrome Treatment-Related Genes, MECP2, CDKL5, and FOXG1, by Evolutionary Classification and Disordered Region Assessment. PMID:31717404
Massive Loss of Olfactory Receptors But Not Trace Amine-Associated Receptors in the World's Deepest-Living Fish (Pseudoliparis swirei). PMID:31717379
Combinatorial Evolution of a Terpene Synthase Gene Cluster Explains Terpene Variations in Oryza. PMID:31712306
The Dundee Resource for Sequence Analysis and Structure Prediction. PMID:31710725
Reprogramming of Retrotransposon Activity during Speciation of the Genus Citrus. PMID:31710678
Optimizing Phylogenomics with Rapidly Evolving Long Exons: Comparison with Anchored Hybrid Enrichment and Ultraconserved Elements. PMID:31710677
The Effect of Milk Replacer Composition on the Intestinal Microbiota of Pre-ruminant Dairy Calves. PMID:31709269
The Complete Mitochondrial Genome of the Caecal Fluke of Poultry, Postharmostomum commutatum, as the First Representative from the Superfamily Brachylaimoidea. PMID:31708971
Assessing the Diversity and Distribution of Apicomplexans in Host and Free-Living Environments Using High-Throughput Amplicon Data and a Phylogenetically Informed Reference Framework. PMID:31708883
Evolution of infectious bronchitis virus in the field after homologous vaccination introduction. PMID:31706335
Neisseria meningitidis: using genomics to understand diversity, evolution and pathogenesis. PMID:31705134
Temporal and spatial dynamics of Bacteria, Archaea and protists in equatorial coastal waters. PMID:31704973
ConSurf-DB: An accessible repository for the evolutionary conservation patterns of the majority of PDB proteins. PMID:31702846
Haiti Poliovirus Environmental Surveillance. PMID:31701857
Phylogenomics investigation of sparids (Teleostei: Spariformes) using high-quality proteomes highlights the importance of taxon sampling. PMID:31701028
A non-parametric analytic framework for within-host viral phylogenies and a test for HIV-1 founder multiplicity. PMID:31700680
Characterization of nAChRs in Nematostella vectensis supports neuronal and non-neuronal roles in the cnidarian-bilaterian common ancestor. PMID:31700598
Meta-Transcriptomic Comparison of the RNA Viromes of the Mosquito Vectors Culex pipiens and Culex torrentium in Northern Europe. PMID:31698792
Evolution of Codon Usage Bias in Diatoms. PMID:31698749
Genome size variation at constant chromosome number is not correlated with repetitive DNA dynamism in Anacyclus (Asteraceae). PMID:31697800
A Burst of Genetic Innovation in Drosophila Actin-Related Proteins for Testis-Specific Function. PMID:31697328
The complete chloroplast genome of Dendrobium nobile, an endangered medicinal orchid from north-east India and its comparison with related Dendrobium species. PMID:31695964
Comparison of oral microbiome profiles in stimulated and unstimulated saliva, tongue, and mouth-rinsed water. PMID:31695050
Elucidating the role of shikimate dehydrogenase in controlling the production of anthocyanins and hydrolysable tannins in the outer peels of pomegranate. PMID:31694546
Intermediate-Salinity Systems at High Altitudes in the Peruvian Andes Unveil a High Diversity and Abundance of Bacteria and Viruses. PMID:31694288
Structural characterization of the RH1-LZI tandem of JIP3/4 highlights RH1 domains as a cytoskeletal motor-binding motif. PMID:31690808
Sow Thistle Chloroplast Genomes: Insights into the Plastome Evolution and Relationship of Two Weedy Species, Sonchus asper and Sonchus oleraceus (Asteraceae). PMID:31683955
Hadrurid Scorpion Toxins: Evolutionary Conservation and Selective Pressures. PMID:31683932
Susceptibility of Chickens to Low Pathogenic Avian Influenza (LPAI) Viruses of Wild Bird- and Poultry-Associated Subtypes. PMID:31683727
Rousettus aegyptiacus Bats Do Not Support Productive Nipah Virus Replication. PMID:31682727
Museomics Clarifies the Classification of Aloidendron (Asphodelaceae), the Iconic African Tree Aloes. PMID:31681358
Analyses of Seven New Genomes of Xanthomonas citri pv. aurantifolii Strains, Causative Agents of Citrus Canker B and C, Show a Reduced Repertoire of Pathogenicity-Related Genes. PMID:31681223
Annual Protist Community Dynamics in a Freshwater Ecosystem Undergoing Contrasted Climatic Conditions: The Saint-Charles River (Canada). PMID:31681222
SlZRT2 Encodes a ZIP Family Zn Transporter With Dual Localization in the Ectomycorrhizal Fungus Suillus luteus. PMID:31681189
Early Diverging Fungus Mucor circinelloides Lacks Centromeric Histone CENP-A and Displays a Mosaic of Point and Regional Centromeres. PMID:31679929
Diversity, dynamics and effects of long terminal repeat retrotransposons in the model grass Brachypodium distachyon. PMID:31677277
Historical biogeography of the widespread macroalga Sargassum (Fucales, Phaeophyceae). PMID:31677168
Agua Salud alphavirus defines a novel lineage of insect-specific alphaviruses discovered in the New World. PMID:31674898
Genetic Biomonitoring and Biodiversity Assessment Using Portable Sequencing Technologies: Current Uses and Future Directions. PMID:31671909
Evolutionary Analysis of Bile Acid-Conjugating Enzymes Reveals a Complex Duplication and Reciprocal Loss History. PMID:31670760
First elucidation of a blood fluke (Electrovermis zappum n. gen., n. sp.) life cycle including a chondrichthyan or bivalve. PMID:31667079
An empirical assessment of a single family-wide hybrid capture locus set at multiple evolutionary timescales in Asteraceae. PMID:31667023
Chloroplast primers for clade-wide phylogenetic studies of Thalictrum. PMID:31667022
DnaJ molecules as potential effectors in Meloidogyne arenaria. An unexplored group of proteins in plant parasitic nematodes. PMID:31666916
Massive gene amplification on a recently formed Drosophila Y chromosome. PMID:31666742
Hyperdiverse archaea near life limits at the polyextreme geothermal Dallol area. PMID:31666740
Genome-Scale Phylogeny and Evolutionary Analysis of Ross River Virus Reveals Periodic Sweeps of Lineage Dominance in Western Australia, 1977-2014. PMID:31666378
Large-scale genomic sequence data resolve the deepest divergences in the legume phylogeny and support a near-simultaneous evolutionary origin of all six subfamilies. PMID:31665814
Molecular Diversification of the Seminal Fluid Proteome in a Recently Diverged Passerine Species Pair. PMID:31665510
The Mitochondrial Genome of Eleusine indica and Characterization of Gene Content within Poaceae. PMID:31665327
A Phylogenomic Approach to Clarifying the Relationship of Mesodinium within the Ciliophora: A Case Study in the Complexity of Mixed-Species Transcriptome Analyses. PMID:31665294
Insights into the Host Specificity of Mosquito-Borne Flaviviruses Infecting Wild Mammals. PMID:31664588
Broad North Atlantic distribution of a meiobenthic annelid - against all odds. PMID:31664164
Taxonomy of the Sphaerostilbella broomeana-group (Hypocreales, Ascomycota). PMID:31662730
First Report of Segmented Filamentous Bacteria Associated with Rhigonema Sp. (Nematoda: Rhigonematidae) Dwelling in Hindgut of Riukiaria Sp. (Diplopoda: Xystodesmidae). PMID:31662694
Diaporthalean fungi associated with canker and dieback of trees from Mount Dongling in Beijing, China. PMID:31662621
Additions to the knowledge of Ganoderma in Thailand: Ganoderma casuarinicola, a new record; and Ganoderma thailandicum sp. nov. PMID:31662620
Morphology and phylogenetic analysis of two new deep-sea species of Chrysogorgia (Cnidaria, Octocorallia, Chrysogorgiidae) from Kocebu Guyot (Magellan seamounts) in the Pacific Ocean. PMID:31662612
Venom Diversity and Evolution in the Most Divergent Cone Snail Genus Profundiconus. PMID:31661832
Identification of Cryptosporidium viatorum XVa subtype family in two wild rat species in China. PMID:31661007
Salicibibacter halophilus sp. nov., a moderately halophilic bacterium isolated from kimchi. PMID:31659686
Gibberellin Signaling Is Required for Far-Red Light-Induced Shoot Elongation in Pinus tabuliformis Seedlings. PMID:31659126
Nucleic acid cleavage with a hyperthermophilic Cas9 from an uncultured Ignavibacterium. PMID:31659048
Distribution of Foliicolous Lichen Strigula and Genetic Structure of S. multiformis on Jeju Island, South Korea. PMID:31658641
Description of Echthrogaleus spinulus n. sp. (Copepoda: Pandaridae) parasitic on a torpedo ray from the central Pacific Ocean utilising a morphological and molecular approach. PMID:31654292
The complete chloroplast genomes of two species in threatened monocot genus Caldesia in China. PMID:31654262
Structural variation of the complete chloroplast genome and plastid phylogenomics of the genus Asteropyrum (Ranunculaceae). PMID:31653891
Transcriptomic Analysis Reveals the Roles of Detoxification Systems in Response to Mercury in Chromera velia. PMID:31653042
Viral Metagenomics Revealed Sendai Virus and Coronavirus Infection of Malayan Pangolins (Manis javanica). PMID:31652964
An Association of Gut Microbiota with Different Phenotypes in Chinese Patients with Rheumatoid Arthritis. PMID:31652955
Fungal Diversity in Intertidal Mudflats and Abandoned Solar Salterns as a Source for Biological Resources. PMID:31652878
Developing Chloroplast Genomic Resources from 25 Avena Species for the Characterization of Oat Wild Relative Germplasm. PMID:31652703
A complex evolutionary relationship between HHV-6A and HHV-6B. PMID:31649826
A secreted metal-binding protein protects necrotrophic phytopathogens from reactive oxygen species. PMID:31649262
PhyloMagnet: fast and accurate screening of short-read meta-omics data using gene-centric phylogenetics. PMID:31647547
Comparative genomic analysis of the Hafnia genus reveals an explicit evolutionary relationship between the species alvei and paralvei and provides insights into pathogenicity. PMID:31646960
A high-quality Actinidia chinensis (kiwifruit) genome. PMID:31645971
Pan-plastome approach empowers the assessment of genetic variation in cultivated Capsicum species. PMID:31645963
Cryptic diversity of limestone karst inhabiting land snails (Cyclophorus spp.) in northern Vietnam, their evolutionary history and the description of four new species. PMID:31644567
Retrotransposons spread potential cis-regulatory elements during mammary gland evolution. PMID:31642473
Insights revealed by the co-crystal structure of the Saccharomyces cerevisiae histidine phosphotransfer protein Ypd1 and the receiver domain of its downstream response regulator Ssk1. PMID:31642125
Assessment of the role of Wolbachia in mtDNA paraphyly and the evolution of unisexuality in Calligrapha (Coleoptera: Chrysomelidae). PMID:31641465
Phenomics reveals a novel putative chloroplast fatty acid transporter in the marine diatom Skeletonema marinoi involved in temperature acclimation. PMID:31641221
The RNA-binding ubiquitin ligase MKRN1 functions in ribosome-associated quality control of poly(A) translation. PMID:31640799
Mitochondrial genome in Hypsizygus marmoreus and its evolution in Dikarya. PMID:31640544
Molecular Characterization of Leishmania RNA virus 2 in Leishmania major from Uzbekistan. PMID:31640177
Hidden biodiversity revealed by integrated morphology and genetic species delimitation of spring dwelling water mite species (Acari, Parasitengona: Hydrachnidia). PMID:31639027
Laboratory diagnostics, phylogenetic analysis and clinical outcome of a subcutaneous Mycoleptodiscus indicus infection in an immunocompetent cat. PMID:31639008
Altered Middle Ear Microbiome in Children With Chronic Otitis Media With Effusion and Respiratory Illnesses. PMID:31637220
Foliar pathogens of eucalypts. PMID:31636729
Persistence of multiple patterns and intraspecific polymorphism in multi-species Müllerian communities of net-winged beetles. PMID:31636689
Effects of Habitat Partitioning on the Distribution of Bacterioplankton in Deep Lakes. PMID:31636614
Fermentation innovation through complex hybridization of wild and domesticated yeasts. PMID:31636426
Phylogenomics reveals the evolutionary timing and pattern of butterflies and moths. PMID:31636187
Extraocular, rod-like photoreceptors in a flatworm express xenopsin photopigment. PMID:31635694
Phylogenomic Resolution of the Cetacean Tree of Life Using Target Sequence Capture. PMID:31633766
Longitudinal and Cross-Sectional Sampling of Serpentovirus (Nidovirus) Infection in Captive Snakes Reveals High Prevalence, Persistent Infection, and Increased Mortality in Pythons and Divergent Serpentovirus Infection in Boas and Colubrids. PMID:31632990
An Optimized Screen Reduces the Number of GA Transporters and Provides Insights Into Nitrate Transporter 1/Peptide Transporter Family Substrate Determinants. PMID:31632416
Genome-Based Metabolic Reconstruction of a Novel Uncultivated Freshwater Magnetotactic coccus "Ca. Magnetaquicoccus inordinatus" UR-1, and Proposal of a Candidate Family "Ca. Magnetaquicoccaceae". PMID:31632385
Runaway Kaposi Sarcoma-associated herpesvirus replication correlates with systemic IL-10 levels. PMID:31629226
Storage media and not extraction method has the biggest impact on recovery of bacteria from the oral microbiome. PMID:31628387
A Promiscuous CYP706A3 Reduces Terpene Volatile Emission from Arabidopsis Flowers, Affecting Florivores and the Floral Microbiome. PMID:31628167
Characterization of genetic diversity on tropical Trichoderma germplasm by sequencing of rRNA internal transcribed spacers. PMID:31627730
Novel Viruses in Mosquitoes from Brazilian Pantanal. PMID:31627274
Pangenome of Acinetobacter baumannii uncovers two groups of genomes, one of them with genes involved in CRISPR/Cas defence systems associated with the absence of plasmids and exclusive genes for biofilm formation. PMID:31626589
Identification of new viral variants specific to the honey bee mite Varroa destructor. PMID:31624979
Serial horizontal transfer of vitamin-biosynthetic genes enables the establishment of new nutritional symbionts in aphids' di-symbiotic systems. PMID:31624345
Complete Genome Sequence of a Virulent African Swine Fever Virus from a Domestic Pig in Ukraine. PMID:31624164
ASPEN, a methodology for reconstructing protein evolution with improved accuracy using ensemble models. PMID:31621582
Cytospora elaeagnicola sp. nov. Associated with Narrow-leaved Oleaster Canker Disease in China. PMID:31620308
Evolution and Unprecedented Variants of the Mitochondrial Genetic Code in a Lineage of Green Algae. PMID:31617565
Hepatitis C virus genotype 1 and 2 recombinant genomes and the phylogeographic history of the 2k/1b lineage. PMID:31616569
Taxonomic and Metabolic Incongruence in the Ancient Genus Streptomyces. PMID:31616394
Identification and Expression Analyses of Olfactory Gene Families in the Rice Grasshopper, Oxya chinensis, From Antennal Transcriptomes. PMID:31616318
Crystal Structure-Based Exploration of Arginine-Containing Peptide Binding in the ADP-Ribosyltransferase Domain of the Type III Effector XopAI Protein. PMID:31615004
Hinge Region in DNA Packaging Terminase pUL15 of Herpes Simplex Virus: A Potential Allosteric Target for Antiviral Drugs. PMID:31614784
Memory CD4 + T-Cells Expressing HLA-DR Contribute to HIV Persistence During Prolonged Antiretroviral Therapy. PMID:31611857
Evolutionary Analysis of the VP1 and RNA-Dependent RNA Polymerase Regions of Human Norovirus GII.P17-GII.17 in 2013-2017. PMID:31611853
Rare human mitochondrial HV lineages spread from the Near East and Caucasus during post-LGM and Neolithic expansions. PMID:31611588
Complete mitochondrial genome sequence of Labriocimbex sinicus, a new genus and new species of Cimbicidae (Hymenoptera) from China. PMID:31608181
Exploiting the Zonulin Mouse Model to Establish the Role of Primary Impaired Gut Barrier Function on Microbiota Composition and Immune Profiles. PMID:31608059
Plastome of Quercus xanthoclada and comparison of genomic diversity amongst selected Quercus species using genome skimming. PMID:31607787
The Prevotella copri Complex Comprises Four Distinct Clades Underrepresented in Westernized Populations. PMID:31607556
Programmable Inhibition and Detection of RNA Viruses Using Cas13. PMID:31607545
Evolutionary, genetic, structural characterization and its functional implications for the influenza A (H1N1) infection outbreak in India from 2009 to 2017. PMID:31604969
Conjugative Transfer of IncP-9 Catabolic Plasmids Requires a Previously Uncharacterized Gene, mpfK, Whose Homologs Are Conserved in Various MPFT-Type Plasmids. PMID:31604768
Identification and Visualization of Functionally Important Domains and Residues in Herpes Simplex Virus Glycoprotein K(gK) Using a Combination of Phylogenetics and Protein Modeling. PMID:31601827
Plasmodium kinesin-8X associates with mitotic spindles and is essential for oocyst development during parasite proliferation and transmission. PMID:31600347
Reconstructing the population history of the sandy beach amphipod Haustorioides japonicus using the calibration of demographic transition (CDT) approach. PMID:31596891
Cytomegalovirus Genetic Diversity Following Primary Infection. PMID:31593588
Extensive plastome reduction and loss of photosynthesis genes in Diphelypaea coccinea, a holoparasitic plant of the family Orobanchaceae. PMID:31592357
Three novel insect-associated species of Simplicillium (Cordycipitaceae, Hypocreales) from Southwest China. PMID:31592222
A new species of Petrolisthes (Crustacea, Anomura, Porcellanidae) inhabiting vermetid formations (Mollusca, Gastropoda, Vermetidae) in the southern Caribbean Sea. PMID:31592219
Evolution and regulation of nitrogen flux through compartmentalized metabolic networks in a marine diatom. PMID:31591397
Divergent Functional Diversification Patterns in the SEP/AGL6/AP1 MADS-Box Transcription Factor Superclade. PMID:31591161
New different origins and evolutionary processes of AP2/EREBP transcription factors in Taxus chinensis. PMID:31590655
Patterns and Constraints in the Evolution of Sperm Individualization Genes in Insects, with an Emphasis on Beetles. PMID:31590243
Continued Adaptation of C4 Photosynthesis After an Initial Burst of Changes in the Andropogoneae Grasses. PMID:31589325
The Evolutionary History of Ephs and Ephrins: Toward Multicellular Organisms. PMID:31589243
Reconstruction of protein domain evolution using single-cell amplified genomes of uncultured choanoflagellates sheds light on the origin of animals. PMID:31587642
Targeted metagenomic recovery of four divergent viruses reveals shared and distinctive characteristics of giant viruses of marine eukaryotes. PMID:31587639
A single-cell genome reveals diplonemid-like ancestry of kinetoplastid mitochondrial gene structure. PMID:31587636
Revisited - the species of Tweeting vineyard snails, genus Cantareus Risso, 1826 (Stylommatophora, Helicidae, Helicinae, Otalini). PMID:31582884
Comparison of the Whole-Plastome Sequence between the Bonin Islands Endemic Rubus boninensis and Its Close Relative, Rubus trifidus (Rosaceae), in the Southern Korean Peninsula. PMID:31581648
De Novo Assembly Discovered Novel Structures in Genome of Plastids and Revealed Divergent Inverted Repeats in Mammillaria (Cactaceae, Caryophyllales). PMID:31581555
Genetic relationships between the RACK1 homolog cpc-2 and heterotrimeric G protein subunit genes in Neurospora crassa. PMID:31581262
Genomic and metabolic differences between Pseudomonas putida populations inhabiting sugarcane rhizosphere or bulk soil. PMID:31581220
Transcriptome analysis of Xanthomonas oryzae pv. oryzicola exposed to H2O2 reveals horizontal gene transfer contributes to its oxidative stress response. PMID:31581193
Genus-wide Yersinia core-genome multilocus sequence typing for species identification and strain characterization. PMID:31580794
Resolving Phylogenetic Relationships within Passeriformes Based on Mitochondrial Genes and Inferring the Evolution of Their Mitogenomes in Terms of Duplications. PMID:31580435
Characterizing gene tree conflict in plastome-inferred phylogenies. PMID:31579615
Identification of genes encoding ALMT and MATE transporters as candidate aluminum tolerance genes from a typical acid soil plant, Psychotria rubra (Rubiaceae). PMID:31579611
The rediscovery of the rare Vietnamese endemic Eriophorum scabriculme redefines generic limits in the Scirpo-Caricoid Clade (Cyperaceae). PMID:31579569
The complete chloroplast genome of Stryphnodendron adstringens (Leguminosae - Caesalpinioideae): comparative analysis with related Mimosoid species. PMID:31578450
The functional ClpXP protease of Chlamydia trachomatis requires distinct clpP genes from separate genetic loci. PMID:31575885
Contrasting Biogeographic Patterns of Bacterial and Archaeal Diversity in the Top- and Subsoils of Temperate Grasslands. PMID:31575667
Transferrin Identification in Sterlet (Acipenser ruthenus) Reproductive System. PMID:31575042
Characterization and Expression Analysis of ERF Genes in Fragaria vesca Suggest Different Divergences of Tandem ERF Duplicates. PMID:31572436
Recruitment of Reverse Transcriptase-Cas1 Fusion Proteins by Type VI-A CRISPR-Cas Systems. PMID:31572350
Moving Beyond the Host: Unraveling the Skin Microbiome of Endangered Costa Rican Amphibians. PMID:31572313
The cbb 3-type cytochrome oxidase assembly factor CcoG is a widely distributed cupric reductase. PMID:31570589
Conotoxin Diversity in the Venom Gland Transcriptome of the Magician's Cone, Pionoconus magus. PMID:31569823
Genetic diversity of respiratory enteroviruses and rhinoviruses in febrile adults, Singapore, 2007-2013. PMID:31568667
Microbiome profiling of the onion thrips, Thrips tabaci Lindeman (Thysanoptera: Thripidae). PMID:31568480
Rhopalocnemis phalloides has one of the most reduced and mutated plastid genomes known. PMID:31565552
Plant host and drought shape the root associated fungal microbiota in rice. PMID:31565550
Phytopythium and Pythium Species (Oomycota) Isolated from Freshwater Environments of Korea. PMID:31565462
Adenoviral Infections in Singapore: Should New Antiviral Therapies and Vaccines Be Adopted? PMID:31563943
A multilocus sequence typing scheme of Pseudomonas putida for clinical and environmental isolates. PMID:31562354
Complete Sequence, Multichromosomal Architecture and Transcriptome Analysis of the Solanum tuberosum Mitochondrial Genome. PMID:31561566
Genome Mining Coupled with OSMAC-Based Cultivation Reveal Differential Production of Surugamide A by the Marine Sponge Isolate Streptomyces sp. SM17 When Compared to Its Terrestrial Relative S. albidoflavus J1074. PMID:31561472
Selection of 2'-Deoxy-2'-Fluoroarabino Nucleic Acid (FANA) Aptamers That Bind HIV-1 Integrase with Picomolar Affinity. PMID:31560515
RiceRelativesGD: a genomic database of rice relatives for rice research. PMID:31560050
Potato virus Y; the Andean connection. PMID:31559020
Convergent evolution of a vertebrate-like methylome in a marine sponge. PMID:31558833
Comparative Genomic Analysis of the Pheromone Receptor Class 1 Family (V1R) Reveals Extreme Complexity in Mouse Lemurs (Genus, Microcebus) and a Chromosomal Hotspot across Mammals. PMID:31555816
Genomic Insights into the Adaptive Convergent Evolution. PMID:31555059
Analysis of the B cell receptor repertoire in six immune-mediated diseases. PMID:31554970
Mining MYB transcription factors from the genomes of orchids (Phalaenopsis and Dendrobium) and characterization of an orchid R2R3-MYB gene involved in water-soluble polysaccharide biosynthesis. PMID:31554868
Conservation and novelty in the microRNA genomic landscape of hyperdiverse cichlid fishes. PMID:31554838
Phylogenomic analysis of gastroenteritis-associated Clostridium perfringens in England and Wales over a 7-year period indicates distribution of clonal toxigenic strains in multiple outbreaks and extensive involvement of enterotoxin-encoding (CPE) plasmids. PMID:31553300
A phylogenetic approach to a global supraspecific taxonomy of Cortinarius (Agaricales) with an emphasis on the southern mycota. PMID:31551621
Re-evaluation of Mycoleptodiscus species and morphologically similar fungi. PMID:31551619
Evaluating methodologies for species delimitation: the mismatch between phenotypes and genotypes in lichenized fungi (Bryoria sect. Implexae, Parmeliaceae). PMID:31551615
Ophiostomatoid fungi associated with the spruce bark beetle Ips typographus, including 11 new species from China. PMID:31551614
Colletotrichum species associated with anthracnose of Pyrus spp. in China. PMID:31551612
Distinct Chemotaxis Protein Paralogs Assemble into Chemoreceptor Signaling Arrays To Coordinate Signaling Output. PMID:31551333
The Parauncinula polyspora Draft Genome Provides Insights into Patterns of Gene Erosion and Genome Expansion in Powdery Mildew Fungi. PMID:31551331
Genomic characterization of human adenovirus type 4 strains isolated worldwide since 1953 identifies two separable phylogroups evolving at different rates from their most recent common ancestor. PMID:31550608
Identification of a distinct lineage of aviadenovirus from crane feces. PMID:31549291
Identification of putative amine receptor complement in the eyestalk of the crayfish, Procambarus clarkii. PMID:31549228
Regional epigenetic differentiation of the Z Chromosome between sexes in a female heterogametic system. PMID:31548356
Comparison of Whole Plastome Sequences between Thermogenic Skunk Cabbage Symplocarpus renifolius and Nonthermogenic S. nipponicus (Orontioideae; Araceae) in East Asia. PMID:31547213
Characterization of the complete chloroplast genome of Nitraria tangutorum, a desert shrub. PMID:31544792
Comparative analysis of camelid mitochondrial genomes. PMID:31544791
Compositional Analysis of Flatworm Genomes Shows Strong Codon Usage Biases Across All Classes. PMID:31543897
NODULE INCEPTION Recruits the Lateral Root Developmental Program for Symbiotic Nodule Organogenesis in Medicago truncatula. PMID:31543454
Hypermethylation-associated downregulation of microRNA-4456 in hypersexual disorder with putative influence on oxytocin signalling: A DNA methylation analysis of miRNA genes. PMID:31542994
Integrative Analysis of the Core Fruit Lignification Toolbox in Pear Reveals Targets for Fruit Quality Bioengineering. PMID:31540505
The Expanded SWEET Gene Family Following Whole Genome Triplication in Brassica rapa. PMID:31540414
The First Highly Contiguous Genome Assembly of Pikeperch (Sander lucioperca), an Emerging Aquaculture Species in Europe. PMID:31540274
Chloroplast Genomes and Comparative Analyses among Thirteen Taxa within Myrsinaceae s.str. Clade (Myrsinoideae, Primulaceae). PMID:31540236
Synergistic Activity of Mobile Genetic Element Defences in Streptococcus pneumoniae. PMID:31540216
The diversity and ecological roles of Penicillium in intertidal zones. PMID:31537866
Diverse respiratory capacity among Thermus strains from US Great Basin hot springs. PMID:31535211
Rubroshiraia gen. nov., a second hypocrellin-producing genus in Shiraiaceae (Pleosporales). PMID:31534413
A new species of freshwater crab of the genus Mediapotamon Türkay & Dai, 1997 (Crustacea, Decapoda, Brachyura, Potamidae) from Guizhou, China. PMID:31534382
Tracking the Fate of Endogenous Retrovirus Segregation in Wild and Domestic Cats. PMID:31534037
Novel Genetic Rearrangements Termed "Structural Variation Polymorphisms" Contribute to the Genetic Diversity of Orthohepadnaviruses. PMID:31533314
Horizontal transfer of a pathway for coumarate catabolism unexpectedly inhibits purine nucleotide biosynthesis. PMID:31532038
High-coverage genomes to elucidate the evolution of penguins. PMID:31531675
Genome Comparison Reveals Mutation Hotspots in the Chloroplast Genome and Phylogenetic Relationships of Ormosia Species. PMID:31531364
A shared core microbiome in soda lakes separated by large distances. PMID:31530813
Repeated species radiations in the recent evolution of the key marine phytoplankton lineage Gephyrocapsa. PMID:31530807
Contrasting Mixotrophic Lifestyles Reveal Different Ecological Niches in Two Closely Related Marine Protists. PMID:31529498
Phylogenomic analyses reveal intractable evolutionary history of a temperate bamboo genus (Poaceae: Bambusoideae). PMID:31528780
A first phylogenetic study on stoloniferous octocorals off the coast of Kota Kinabalu, Sabah, Malaysia, with the description of two new genera and five new species. PMID:31528119
Lactulose drives a reversible reduction and qualitative modulation of the faecal microbiota diversity in healthy dogs. PMID:31527716
Protamines from liverwort are produced by post-translational cleavage and C-terminal di-aminopropanelation of several male germ-specific H1 histones. PMID:31527083
Crassisporus gen. nov. (Polyporaceae, Basidiomycota) evidenced by morphological characters and phylogenetic analyses with descriptions of four new species. PMID:31523162
MitoIMP: A Computational Framework for Imputation of Missing Data in Low-Coverage Human Mitochondrial Genome. PMID:31523131
A Bacterial Effector Mimics a Host HSP90 Client to Undermine Immunity. PMID:31522888
New Non-Bilaterian Transcriptomes Provide Novel Insights into the Evolution of Coral Skeletomes. PMID:31518412
Combining morphological and genomic evidence to resolve species diversity and study speciation processes of the Pallenopsis patagonica (Pycnogonida) species complex. PMID:31516540
Genomic and Mitochondrial Data Identify Different Species Boundaries in Aposematically Polymorphic Eniclases Net-Winged Beetles (Coleoptera: Lycidae). PMID:31514482
Large-Scale Molecular Evolutionary Analysis Uncovers a Variety of Polynucleotide Kinase Clp1 Family Proteins in the Three Domains of Life. PMID:31513263
Genomic Variation among Strains of Crithidia bombi and C. expoeki. PMID:31511368
Statistical compression of protein sequences and inference of marginal probability landscapes over competing alignments using finite state models and Dirichlet priors. PMID:31510703
Xenopus fraseri: Mr. Fraser, where did your frog come from? PMID:31509539
New Halonotius Species Provide Genomics-Based Insights Into Cobalamin Synthesis in Haloarchaea. PMID:31507553
Metatranscriptomics yields new genomic resources and sensitive detection of infections for diverse blood parasites. PMID:31507097
Genomic and developmental characterisation of a novel bunyavirus infecting the crustacean Carcinus maenas. PMID:31506463
Diversification of giant and large eukaryotic dsDNA viruses predated the origin of modern eukaryotes. PMID:31506349
Metagenomes from Coastal Marine Sediments Give Insights into the Ecological Role and Cellular Features of Loki- and Thorarchaeota. PMID:31506313
Loss of olfaction in sea snakes provides new perspectives on the aquatic adaptation of amniotes. PMID:31506057
The Evolution of Reverse Gyrase Suggests a Nonhyperthermophilic Last Universal Common Ancestor. PMID:31504731
Plastome Reduction in the Only Parasitic Gymnosperm Parasitaxus Is Due to Losses of Photosynthesis but Not Housekeeping Genes and Apparently Involves the Secondary Gain of a Large Inverted Repeat. PMID:31504501
The Impact of Natural Selection on the Evolution and Function of Placentally Expressed Galectins. PMID:31504490
The quagga mussel genome and the evolution of freshwater tolerance. PMID:31504356
The global distribution and evolutionary history of the pT26-2 archaeal plasmid family. PMID:31503394
New record of the rare genus Crinalium Crow (Oscillatoriales, Cyanobacteria) from sand dunes of the Baltic Sea, Germany: epitypification and emendation of Crinalium magnum Fritsch et John based on an integrative approach. PMID:31501642
A subfamily roadmap of the evolutionarily diverse glycoside hydrolase family 16 (GH16). PMID:31501245
Homologous recombination shapes the genetic diversity of African swine fever viruses. PMID:31500735
Duplication history and molecular evolution of the rbcS multigene family in angiosperms. PMID:31498865
Evolution of Yin and Yang isoforms of a chromatin remodeling subunit precedes the creation of two genes. PMID:31498079
Phylogenetic analysis of Fritillaria cirrhosa D. Don and its closely related species based on complete chloroplast genomes. PMID:31497389
High-quality Schistosoma haematobium genome achieved by single-molecule and long-range sequencing. PMID:31494670
Pathogenicity and genomic changes of a 2016 European H5N8 highly pathogenic avian influenza virus (clade 2.3.4.4) in experimentally infected mallards and chickens. PMID:31493656
The first known fossil Uma: ecological evolution and the origins of North American fringe-toed lizards. PMID:31492110
Distribution and Community Assembly of Trees Along an Andean Elevational Gradient. PMID:31491875
Molecular and Antigenic Characterization of GI-13 and GI-16 Avian Infectious Bronchitis Virus Isolated in Chile from 2009 to 2017 Regarding 4/91 Vaccine Introduction. PMID:31491868
Meta-taxonomic analysis of prokaryotic and eukaryotic gut flora in stool samples from visceral leishmaniasis cases and endemic controls in Bihar State India. PMID:31490933
Convergent evolution of linked mating-type loci in basidiomycete fungi. PMID:31490920
New and Preliminary Evidence on Altered Oral and Gut Microbiota in Individuals with Autism Spectrum Disorder (ASD): Implications for ASD Diagnosis and Subtyping Based on Microbial Biomarkers. PMID:31489949
Transcriptome and gene expression analysis of three developmental stages of the coffee berry borer, Hypothenemus hampei. PMID:31488852
DREB/CBF expression in wheat and barley using the stress-inducible promoters of HD-Zip I genes: impact on plant development, stress tolerance and yield. PMID:31487424
Plant evolution and environmental adaptation unveiled by long-read whole-genome sequencing of Spirodela. PMID:31484765
Eimeria spp. (Apicomplexa: Eimeriidae) from great horned owls, Bubo virginianus (Gmelin) (Aves: Strigiformes) from Arkansas and Oklahoma, USA, with novel molecular information on Eimeria bubonis Cawthorn & Stockdale, 1981. PMID:31482383
Streptococcus pneumoniae Evades Host Cell Phagocytosis and Limits Host Mortality Through Its Cell Wall Anchoring Protein PfbA. PMID:31482074
Exploring the diversity of Poaceae-infecting mastreviruses on Reunion Island using a viral metagenomics-based approach. PMID:31481704
The nuclear 18S ribosomal DNAs of avian haemosporidian parasites. PMID:31481072
Natural Variation and Domestication Selection of ZmPGP1 Affects Plant Architecture and Yield-Related Traits in Maize. PMID:31480272
Interferon lambda 4 impacts the genetic diversity of hepatitis C virus. PMID:31478835
Endangered wild salmon infected by newly discovered viruses. PMID:31478480
A novel metabarcoding diagnostic tool to explore protozoan haemoparasite diversity in mammals: a proof-of-concept study using canines from the tropics. PMID:31477800
Comparative genomic analysis of six Glossina genomes, vectors of African trypanosomes. PMID:31477173
Signature of the Paleo-Course Changes in the São Francisco River as Source of Genetic Structure in Neotropical Pithecopus nordestinus (Phyllomedusinae, Anura) Treefrog. PMID:31475035
Inhibition of HTLV-1 Infection by HIV-1 First- and Second-Generation Integrase Strand Transfer Inhibitors. PMID:31474960
Bacterial succession along a sediment porewater gradient at Lake Neusiedl in Austria. PMID:31471542
Insights into an unusual Auxiliary Activity 9 family member lacking the histidine brace motif of lytic polysaccharide monooxygenases. PMID:31471321
Horizontal Gene Transfer and Acquired Antibiotic Resistance in Salmonella enterica Serovar Heidelberg following In Vitro Incubation in Broiler Ceca. PMID:31471306
Cadmium and Selenate Exposure Affects the Honey Bee Microbiome and Metabolome, and Bee-Associated Bacteria Show Potential for Bioaccumulation. PMID:31471302
Human metapneumovirus prevalence and patterns of subgroup persistence identified through surveillance of pediatric pneumonia hospital admissions in coastal Kenya, 2007-2016. PMID:31470805
Updated Phylogeny of Chikungunya Virus Suggests Lineage-Specific RNA Architecture. PMID:31470643
Long-chain flavodoxin FldX1 improves Paraburkholderia xenovorans LB400 tolerance to oxidative stress caused by paraquat and H2O2. PMID:31469877
Gut microbiota features associated with Clostridioides difficile colonization in puppies. PMID:31469837
Complete Chloroplast Genome Sequence of Justicia flava: Genome Comparative Analysis and Phylogenetic Relationships among Acanthaceae. PMID:31467890
Genetic determinants of gut microbiota composition and bile acid profiles in mice. PMID:31465442
Expansion of Thaumarchaeota habitat range is correlated with horizontal transfer of ATPase operons. PMID:31462715
In Vivo Dynamics of Reporter Flaviviridae Viruses. PMID:31462560
Phylodynamics of Influenza A/H1N1pdm09 in India Reveals Circulation Patterns and Increased Selection for Clade 6b Residues and Other High Mortality Mutants. PMID:31462006
Hantaviridae: Current Classification and Future Perspectives. PMID:31461937
Measuring the impact of gene prediction on gene loss estimates in Eukaryotes by quantifying falsely inferred absences. PMID:31461468
Insight Into the Microbial Co-occurrence and Diversity of 73 Grapevine (Vitis vinifera) Crown Galls Collected Across the Northern Hemisphere. PMID:31456792
Long-read metagenomic exploration of extrachromosomal mobile genetic elements in the human gut. PMID:31455406
Comparative Genomic Insights into Secondary Metabolism Biosynthetic Gene Cluster Distributions of Marine Streptomyces. PMID:31454987
bla NDM-5 carried by a hypervirulent Klebsiella pneumoniae with sequence type 29. PMID:31452874
In-silico Design of DNA Oligonucleotides: Challenges and Approaches. PMID:31452858
Origin and Evolution of Diploid and Allopolyploid Camelina Genomes Were Accompanied by Chromosome Shattering. PMID:31451448
Meta-transcriptomic identification of hepatitis B virus in cerebrospinal fluid in patients with central nervous system disease. PMID:31451314
Maturation of the infant rhesus macaque gut microbiome and its role in the development of diarrheal disease. PMID:31451108
Quasipucciniastrum agrimoniae, gen. et sp. nov. on Agrimonia (Rosaceae) from China. PMID:31448148
Three Unrecorded Species Belonging to Penicillium Section Sclerotiora from Marine Environments in Korea. PMID:31448136
Characterization of Achlya americana and A. bisexualis (Saprolegniales, Oomycota) Isolated from Freshwater Environments in Korea. PMID:31448133
The Cattle Fever Tick, Rhipicephalus microplus, as a Model for Forward Pharmacology to Elucidate Kinin GPCR Function in the Acari. PMID:31447698
Whole-genome sequence analysis of multidrug-resistant uropathogenic strains of Escherichia coli from Mexico. PMID:31447566
Diguanylate Cyclases and Phosphodiesterases Required for Basal-Level c-di-GMP in Pseudomonas aeruginosa as Revealed by Systematic Phylogenetic and Transcriptomic Analyses. PMID:31444209
Investigation about the Occurrence of Transmission Cycles of Arbovirus in the Tropical Forest, Amazon Region. PMID:31443500
Travel Surveillance and Genomics Uncover a Hidden Zika Outbreak during the Waning Epidemic. PMID:31442400
Arm-less mitochondrial tRNAs conserved for over 30 millions of years in spiders. PMID:31438844
Discovery and Characterization of Novel RNA Viruses in Aquatic North American Wild Birds. PMID:31438486
Molecular taxonomy of endemic coastal Ligia isopods from the Hawaiian Islands: re-description of L. hawaiensis and description of seven novel cryptic species. PMID:31435494
Insights into the Phylogeny and Evolution of Cold Shock Proteins: From Enteropathogenic Yersinia and Escherichia coli to Eubacteria. PMID:31434224
Toward on-site food authentication using nanopore sequencing. PMID:31432019
Intense interseasonal influenza outbreaks, Australia, 2018/19. PMID:31431210
Understanding evolution in Poales: Insights from Eriocaulaceae plastome. PMID:31430346
Directed Evolution Reveals the Functional Sequence Space of an Adenylation Domain Specificity Code. PMID:31430120
De novo profiling of RNA viruses in Anopheles malaria vector mosquitoes from forest ecological zones in Senegal and Cambodia. PMID:31429704
Sporothrix humicola (Ascomycota: Ophiostomatales) - A soil-borne fungus with pathogenic potential in the eastern quoll (Dasyurus viverrinus). PMID:31428554
New perspectives on the plant PARP family: Arabidopsis PARP3 is inactive, and PARP1 exhibits predominant poly (ADP-ribose) polymerase activity in response to DNA damage. PMID:31426748
Development of Plastid Genomic Resources for Discrimination and Classification of Epimedium wushanense (Berberidaceae). PMID:31426439
Identification and functional analysis of LecRLK genes in Taxodium 'Zhongshanshan'. PMID:31423364
Phylogeny and taxonomy of two new Plectosphaerella (Plectosphaerellaceae, Glomerellales) species from China. PMID:31423085
Bi-allelic GOT2 Mutations Cause a Treatable Malate-Aspartate Shuttle-Related Encephalopathy. PMID:31422819
Assessing the utility of seed coat-specific promoters to engineer cell wall polysaccharide composition of mucilage. PMID:31422517
FAD2 Gene Radiation and Positive Selection Contributed to Polyacetylene Metabolism Evolution in Campanulids. PMID:31420445
Apicomplexan-like parasites are polyphyletic and widely but selectively dependent on cryptic plastid organelles. PMID:31418692
Characterization of the complete mitochondrial genome of the echinostome Echinostoma miyagawai and phylogenetic implications. PMID:31418114
Evidence of Extensive Intraspecific Noncoding Reshuffling in a 169-kb Mitochondrial Genome of a Basidiomycetous Fungus. PMID:31418013
Oyster Versatile IKKα/βs Are Involved in Toll-Like Receptor and RIG-I-Like Receptor Signaling for Innate Immune Response. PMID:31417578
RNA-Seq Analysis Reveals Genes Related to Photoreception, Nutrient Uptake, and Toxicity in a Noxious Red-Tide Raphidophyte Chattonella antiqua. PMID:31417538
Extracellular endonucleases in the midgut of Myzus persicae may limit the efficacy of orally delivered RNAi. PMID:31417162
Large-scale mitogenomic analysis of the phylogeography of the Late Pleistocene cave bear. PMID:31417104
Mitochondrial Genome Sequence of the Land Snail Oreohelix idahoensis. PMID:31416883
Phylogenetic Reclassification of Vertebrate Melatonin Receptors To Include Mel1d. PMID:31416806
Carbon assimilation profiles of mucoralean fungi show their metabolic versatility. PMID:31413281
Tracking outbreak populations of the pepper weevil Anthonomus eugenii (Coleoptera; Curculionidae) using complete mitochondrial genomes. PMID:31412079
Loss of a chloroplast encoded function could influence species range in kelp. PMID:31410278
A chromosome-anchored eggplant genome sequence reveals key events in Solanaceae evolution. PMID:31409808
Evolution of the RNA N 6-Methyladenosine Methylome Mediated by Genomic Duplication. PMID:31409695
Comparative Genomics Reveals Ecological and Evolutionary Insights into Sponge-Associated Thaumarchaeota. PMID:31409660
Phylogeography, genetic diversity, and connectivity of brown bear populations in Central Asia. PMID:31408475
A Short-Term Assessment of Nascent HIV-1 Transmission Clusters Among Newly Diagnosed Individuals Using Envelope Sequence-Based Phylogenetic Analyses. PMID:31407606
Exploring evolution and diversity of Chinese Dipterocarpaceae using next-generation sequencing. PMID:31406227
Comparative Genomics of Marine Sponge-Derived Streptomyces spp. Isolates SM17 and SM18 With Their Closest Terrestrial Relatives Provides Novel Insights Into Environmental Niche Adaptations and Secondary Metabolite Biosynthesis Potential. PMID:31404169
Gasterophilus flavipes (Oestridae: Gasterophilinae): A horse stomach bot fly brought back from oblivion with morphological and molecular evidence. PMID:31404100
Molecular Evolutionary Analysis of Potato Virus Y Infecting Potato Based on the VPg Gene. PMID:31402905
Functional characterization of the translation initiation factor eIF4E of Echinococcus granulosus. PMID:31401657
The ADEP Biosynthetic Gene Cluster in Streptomyces hawaiiensis NRRL 15010 Reveals an Accessory clpP Gene as a Novel Antibiotic Resistance Factor. PMID:31399403
Structural basis for AcrVA4 inhibition of specific CRISPR-Cas12a. PMID:31397669
Parallel Evolution of Complex Centipede Venoms Revealed by Comparative Proteotranscriptomic Analyses. PMID:31396628
Experimental Inoculation of Coral Recruits With Marine Bacteria Indicates Scope for Microbiome Manipulation in Acropora tenuis and Platygyra daedalea. PMID:31396197
The Novel Internalins InlP1 and InlP4 and the Internalin-Like Protein InlP3 Enhance the Pathogenicity of Listeria monocytogenes. PMID:31396177
Horizontally transmitted symbiont populations in deep-sea mussels are genetically isolated. PMID:31395952
Assessment of a metabarcoding approach for the characterisation of vector-borne bacteria in canines from Bangkok, Thailand. PMID:31395073
First molecular approach to the octopus fauna from the southern Caribbean. PMID:31392090
Rates of Molecular Evolution in a Marine Synechococcus Phage Lineage. PMID:31390807
An improved genome assembly of the fluke Schistosoma japonicum. PMID:31390359
Trans-Species Polymorphism in Mitochondrial Genome of Camarodont Sea Urchins. PMID:31387337
The Oxymonad Genome Displays Canonical Eukaryotic Complexity in the Absence of a Mitochondrion. PMID:31387118
Bayesian phylodynamics of avian influenza A virus H9N2 in Asia with time-dependent predictors of migration. PMID:31386651
Dengue genetic divergence generates within-serotype antigenic variation, but serotypes dominate evolutionary dynamics. PMID:31385805
First molecular phylogenetic insights into the evolution of Eriocaulon (Eriocaulaceae, Poales). PMID:31385106
Phylogenetic, genomic, and biogeographic characterization of a novel and ubiquitous marine invertebrate-associated Rickettsiales parasite, Candidatus Aquarickettsia rohweri, gen. nov., sp. nov. PMID:31384012
Transcriptome-wide dynamics of extensive m6A mRNA methylation during Plasmodium falciparum blood-stage development. PMID:31384004
Identification of a Novel Equine Papillomavirus in Semen from a Thoroughbred Stallion with a Penile Lesion. PMID:31382657
Intergeneric Relationships within the Family Salicaceae s.l. based on Plastid Phylogenomics. PMID:31382526
Analyzing and Characterizing the Chloroplast Genome of Salix wilsonii. PMID:31380427
Detection and Molecular Characterization of Novel dsRNA Viruses Related to the Totiviridae Family in Umbelopsis ramanniana. PMID:31380294
Microbial communities across a hillslope-riparian transect shaped by proximity to the stream, groundwater table, and weathered bedrock. PMID:31380022
Microbial Communities of Polymetallic Deposits' Acidic Ecosystems of Continental Climatic Zone With High Temperature Contrasts. PMID:31379766
Rotavirus Species B Encodes a Functional Fusion-Associated Small Transmembrane Protein. PMID:31375572
Genome of Alaskapox Virus, A Novel Orthopoxvirus Isolated from Alaska. PMID:31375015
Natural selection and repeated patterns of molecular evolution following allopatric divergence. PMID:31373555
Metagenomic Next-Generation Sequencing Reveal Presence of a Novel Ungulate Bocaparvovirus in Alpacas. PMID:31370351
Characterization of Aminoacyl-tRNA Synthetases in Chromerids. PMID:31370303
Identifying genetic markers for a range of phylogenetic utility-From species to family level. PMID:31369563
Frankia-Enriched Metagenomes from the Earliest Diverging Symbiotic Frankia Cluster: They Come in Teams. PMID:31368478
Genetic delimitation of Pristimantisorestes (Lynch, 1979) and P.saturninoi Brito et al., 2017 and description of two new terrestrial frogs from the Pristimantisorestes species group (Anura, Strabomantidae). PMID:31367179
Intraspecific Diversity of Fission Yeast Mitochondrial Genomes. PMID:31364709
Hepatitis C subtype distribution in chronically infected patients with mild liver fibrosis in France: the GEMHEP study. PMID:31364570
Coherence of Microcystis species revealed through population genomics. PMID:31363173
Microbiota and gut ultrastructure of Anisakis pegreffii isolated from stranded cetaceans in the Adriatic Sea. PMID:31362767
Genome of the Komodo dragon reveals adaptations in the cardiovascular and chemosensory systems of monitor lizards. PMID:31358948
Challenges in funding and developing genomic software: roots and remedies. PMID:31358028
Discovery of All Three Types in Cartilaginous Fishes Enables Phylogenetic Resolution of the Origins and Evolution of Interferons. PMID:31354716
Short- and Long-Term Effects of UVA on Arabidopsis Are Mediated by a Novel cGMP Phosphodiesterase. PMID:31353185
From Root to Tips: Sporulation Evolution and Specialization in Bacillus subtilis and the Intestinal Pathogen Clostridioides difficile. PMID:31350897
Evolution of Lineage-Specific Gene Networks Underlying the Considerable Fruit Shape Diversity in Persimmon. PMID:31350891
Lipid remodeling regulator 1 (LRL1) is differently involved in the phosphorus-depletion response from PSR1 in Chlamydomonas reinhardtii. PMID:31350858
Dicyemid Mesozoans: A Unique Parasitic Lifestyle and a Reduced Genome. PMID:31347665
Description of a new species of Paraplehnia (Polycladida, Stylochoidea) from Japan, with inference on the phylogenetic position of Plehniidae. PMID:31346307
Phylogenetic measures of indel rate variation among the HIV-1 group M subtypes. PMID:31341641
Updated taxonomy of LactifluussectionLuteoli: L.russulisporus from Australia and L.caliendrifer from Thailand. PMID:31341397
Comparative mitogenomics of the Decapoda reveals evolutionary heterogeneity in architecture and composition. PMID:31341205
Identification and assessment of variable single-copy orthologous (SCO) nuclear loci for low-level phylogenomics: a case study in the genus Rosa (Rosaceae). PMID:31340752
Hiding in plain sight: New virus genomes discovered via a systematic analysis of fungal public transcriptomes. PMID:31339899
Comammox Functionality Identified in Diverse Engineered Biological Wastewater Treatment Systems. PMID:31338378
Comparative structural and evolutionary analyses predict functional sites in the artemisinin resistance malaria protein K13. PMID:31337835
Molecular Detection of the Seed-Borne Pathogen Colletotrichum lupini Targeting the Hyper-Variable IGS Region of the Ribosomal Cluster. PMID:31337095
Developmental exposure to polychlorinated biphenyls (PCBs) in the maternal diet causes host-microbe defects in weanling offspring mice. PMID:31336350
Genomic Insights Into Plant-Growth-Promoting Potentialities of the Genus Frankia. PMID:31333602
Redescription of Eimeria megabubonis Upton, Campbell, Weigel & McKown, 1990 (Apicomplexa: Emeriidae) from the great horned owl Bubo virginianus (Gmelin). PMID:31332671
Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth's biomes. PMID:31332386
Comparison of Four Complete Chloroplast Genomes of Medicinal and Ornamental Meconopsis Species: Genome Organization and Species Discrimination. PMID:31332227
The Dual α-Amidation System in Scorpion Venom Glands. PMID:31330798
Recurrent gene co-amplification on Drosophila X and Y chromosomes. PMID:31329593
Structural and evolutionary characteristics of dynamin-related GTPase OPA1. PMID:31328044
Evolutionary couplings detect side-chain interactions. PMID:31328041
Complete chloroplast genomes of medicinally important Teucrium species and comparative analyses with related species from Lamiaceae. PMID:31328036
Patronus is the elusive plant securin, preventing chromosome separation by antagonizing separase. PMID:31324745
Substrate specificity, regiospecificity, and processivity in glycoside hydrolase family 74. PMID:31324716
Discovery and characterization of the evolution, variation and functions of diversity-generating retroelements using thousands of genomes and metagenomes. PMID:31324156
Diversification of the type IV filament superfamily into machines for adhesion, protein secretion, DNA uptake, and motility. PMID:31323028
Novel hepatitis D-like agents in vertebrates and invertebrates. PMID:31321078
Sequencing and analysis of globally obtained human parainfluenza viruses 1 and 3 genomes. PMID:31318956
Fecal microbiota of different reproductive stages of the central population of the lesser-long nosed bat, Leptonycteris yerbabuenae. PMID:31318946
In marine Bacteroidetes the bulk of glycan degradation during algae blooms is mediated by few clades using a restricted set of genes. PMID:31316134
Rapid and Focused Maturation of a VRC01-Class HIV Broadly Neutralizing Antibody Lineage Involves Both Binding and Accommodation of the N276-Glycan. PMID:31315032
Temporal patterns of diversification in Brassicaceae demonstrate decoupling of rate shifts and mesopolyploidization events. PMID:31314080
Ultraconserved element (UCE) probe set design: Base genome and initial design parameters critical for optimization. PMID:31312430
Resolution of the Portunusgladiator species complex: taxonomic status and identity of Monomiagladiator (Fabricius, 1798) and Monomiahaanii (Stimpson, 1858) (Brachyura, Decapoda, Portunidae). PMID:31312088
Herbivore range expansion triggers adaptation in a subsequently-associated third trophic level species and shared microbial symbionts. PMID:31311998
A SpoIID Homolog Cleaves Glycan Strands at the Chlamydial Division Septum. PMID:31311880
A Coevolved EDS1-SAG101-NRG1 Module Mediates Cell Death Signaling by TIR-Domain Immune Receptors. PMID:31311833
Symbionts of the ciliate Euplotes: diversity, patterns and potential as models for bacteria-eukaryote endosymbioses. PMID:31311477
Analysis of genetic recombination and the pan-genome of a highly recombinogenic bacteriophage species. PMID:31310202
Domestication of Campylobacter jejuni NCTC 11168. PMID:31310201
Evolutionary persistence of insect bunyavirus infection despite host acquisition and expression of the viral nucleoprotein gene. PMID:31308960
Structures of single-layer β-sheet proteins evolved from β-hairpin repeats. PMID:31306512
The role of dispersal for shaping phylogeographical structure of flightless beetles from the Andes. PMID:31304068
The first clawed lobster virus Homarus gammarus nudivirus (HgNV n. sp.) expands the diversity of the Nudiviridae. PMID:31300678
Human gut microbiome changes during a 10 week Randomised Control Trial for micronutrient supplementation in children with attention deficit hyperactivity disorder. PMID:31300667
Molecular basis of egg coat cross-linking sheds light on ZP1-associated female infertility. PMID:31300655
Prediction of interresidue contacts with DeepMetaPSICOV in CASP13. PMID:31298436
Candidate chemosensory genes identified from the greater wax moth, Galleria mellonella, through a transcriptomic analysis. PMID:31296896
Development of the Caecal Microbiota in Three Broiler Breeds. PMID:31294039
Phylogenomic analyses and distribution of terpene synthases among Streptomyces. PMID:31293665
A redescription of Syncarpacomposita (Ascidiacea, Stolidobranchia) with an inference of its phylogenetic position within Styelidae. PMID:31293349
Evolution in action: habitat transition from sediment to the pelagial leads to genome streamlining in Methylophilaceae. PMID:31292537
The LsVe1L allele provides a molecular marker for resistance to Verticillium dahliae race 1 in lettuce. PMID:31291883
Detection of novel tick-borne pathogen, Alongshan virus, in Ixodes ricinus ticks, south-eastern Finland, 2019. PMID:31290392
A spliceosomal twin intron (stwintron) participates in both exon skipping and evolutionary exon loss. PMID:31289343
Ubiquinone Biosynthesis over the Entire O2 Range: Characterization of a Conserved O2-Independent Pathway. PMID:31289180
A Robust Phylogenomic Time Tree for Biotechnologically and Medically Important Fungi in the Genera Aspergillus and Penicillium. PMID:31289177
Genomic reconstruction of σ54 regulons in Clostridiales. PMID:31288763
Global phylogeography and ancient evolution of the widespread human gut virus crAssphage. PMID:31285584
The AMPK system of salmonid fishes was expanded through genome duplication and is regulated by growth and immune status in muscle. PMID:31285449
Engineered Root Bacteria Release Plant-Available Phosphate from Phytate. PMID:31285192
Dynamic virulence-related regions of the plant pathogenic fungus Verticillium dahliae display enhanced sequence conservation. PMID:31282048
A heritable subset of the core rumen microbiome dictates dairy cow productivity and emissions. PMID:31281883
HIV-1 Transmission Patterns in Men Who Have Sex with Men: Insights from Genetic Source Attribution Analysis. PMID:31280593
Comparative genome analysis of Phyllosticta citricarpa and Phyllosticta capitalensis, two fungi species that share the same host. PMID:31277573
Multiple origins of reverse transcriptases linked to CRISPR-Cas systems. PMID:31276437
Bigger and Better? Representativeness of the Influenza A Surveillance Using One Consolidated Clinical Microbiology Laboratory Data Set as Compared to the Belgian Sentinel Network of Laboratories. PMID:31275914
Comparative Chloroplast Genomics at Low Taxonomic Levels: A Case Study Using Amphilophium (Bignonieae, Bignoniaceae). PMID:31275342
Evolutionary Analysis of Unicellular Species in Chlamydomonadales Through Chloroplast Genome Comparison With the Colonial Volvocine Algae. PMID:31275275
Origin and divergence of Afro-Indian Picrodendraceae: linking pollen morphology, dispersal modes, fossil records, molecular dating and paleogeography. PMID:31275086
Biosynthesis of volatile terpenes that accumulate in the secretory cavities of young leaves of Japanese pepper (Zanthoxylum piperitum): Isolation and functional characterization of monoterpene and sesquiterpene synthase genes. PMID:31275004
Two new Erythrophylloporus species (Boletaceae) from Thailand, with two new combinations of American species. PMID:31274985
Co-evolution of sites under immune selection shapes Epstein-Barr Virus population structure. PMID:31273385
Chloroplast phylogenomic analysis provides insights into the evolution of the largest eukaryotic genome holder, Paris japonica (Melanthiaceae). PMID:31272375
iMAP: an integrated bioinformatics and visualization pipeline for microbiome data analysis. PMID:31269897
Extensive chloroplast genome rearrangement amongst three closely related Halamphora spp. (Bacillariophyceae), and evidence for rapid evolution as compared to land plants. PMID:31269054
Mammalian-adaptive mutation NP-Q357K in Eurasian H1N1 Swine Influenza viruses determines the virulence phenotype in mice. PMID:31267843
Soil Microbial Community Responses After Amendment with Thermally Altered Pinus radiata Needles. PMID:31267158
New Ca. Liberibacter psyllaurous haplotype resurrected from a 49-year-old specimen of Solanum umbelliferum: a native host of the psyllid vector. PMID:31267035
An EDS1-SAG101 Complex Is Essential for TNL-Mediated Immunity in Nicotiana benthamiana. PMID:31266900
Ancient origins of arthropod moulting pathway components. PMID:31266593
Proteome-wide signatures of function in highly diverged intrinsically disordered regions. PMID:31264965
Molecular epidemiology of infectious bronchitis virus and avian metapneumovirus in Greece. PMID:31264704
Identification of putative amine biosynthetic enzymes in the nervous system of the crab, Cancer borealis. PMID:31263964
A Genomotaxonomy View of the Bradyrhizobium Genus. PMID:31263459
Exploring Molecular Signs of Sex in the Marine Diatom Skeletonema marinoi. PMID:31261777
Tonantzin, a New Genus of Bess Beetle (Coleoptera, Passalidae) from a Montane Subtropical Forest in Central Mexico, with a Review of the Taxonomic Significance of the Mesofrontal Structure in Proculini. PMID:31261626
Macaque interferon-induced transmembrane proteins limit replication of SHIV strains in an Envelope-dependent manner. PMID:31260493
The complete mitochondrial genome of Paragonimus ohirai (Paragonimidae: Trematoda: Platyhelminthes) and its comparison with P. westermani congeners and other trematodes. PMID:31259095
Host plant associations in Western Palaearctic Longitarsus flea beetles (Chrysomelidae, Galerucinae, Alticini): a preliminary phylogenetic assessment. PMID:31258369
Transcriptome and organellar sequencing highlights the complex origin and diversification of allotetraploid Brassica napus. PMID:31253789
Efflux pumps as an additional source of resistance to trichothecenes in Fusarium proliferatum and Fusarium oxysporum isolates. PMID:31250288
Nuclear DNA from two early Neandertals reveals 80,000 years of genetic continuity in Europe. PMID:31249872
Waterlogging affects plant morphology and the expression of key genes in tef (Eragrostis tef). PMID:31245721
Mobilome of Brevibacterium aurantiacum Sheds Light on Its Genetic Diversity and Its Adaptation to Smear-Ripened Cheeses. PMID:31244798
Novel Victorivirus from a Pakistani Isolate of Alternaria alternata Lacking a Typical Translational Stop/Restart Sequence Signature. PMID:31242660
New evidence of nematode-endosymbiont bacteria coevolution based on one new and one known dagger nematode species of Xiphinema americanum-group (Nematoda, Longidoridae). PMID:31242223
The genome assembly and annotation of yellowhorn (Xanthoceras sorbifolium Bunge). PMID:31241155
Molecular and cytogenetic differentiation within the Lariophagusdistinguendus (Förster, 1841) species complex (Hymenoptera, Pteromalidae). PMID:31240090
Myrothecium-like new species from turfgrasses and associated rhizosphere. PMID:31239822
Terpene Synthase Genes Originated from Bacteria through Horizontal Gene Transfer Contribute to Terpenoid Diversity in Fungi. PMID:31239482
Capture of a functionally active methyl-CpG binding domain by an arthropod retrotransposon family. PMID:31239280
Identification of small molecule enzyme inhibitors as broad-spectrum anthelmintics. PMID:31235822
An unusual and vital protein with guanylate cyclase and P4-ATPase domains in a pathogenic protist. PMID:31235476
Cell Wall Enzymes in Zygnema circumcarinatum UTEX 1559 Respond to Osmotic Stress in a Plant-Like Fashion. PMID:31231410
Reassessment of the generic limits for Hydnellum and Sarcodon (Thelephorales, Basidiomycota). PMID:31231164
Cacaoporus, a new Boletaceae genus, with two new species from Thailand. PMID:31231163
Sexually Dimorphic Influence of Neonatal Antibiotics on Bone. PMID:31228216
HIV-1 DNA sequence diversity and evolution during acute subtype C infection. PMID:31227699
Genome wide analysis of 3' UTR sequence elements and proteins regulating mRNA stability during maternal-to-zygotic transition in zebrafish. PMID:31227602
Wolbachia Acquisition by Drosophila yakuba-Clade Hosts and Transfer of Incompatibility Loci Between Distantly Related Wolbachia. PMID:31227544
The plastomes of Astrocaryum aculeatum G. Mey. and A. murumuru Mart. show a flip-flop recombination between two short inverted repeats. PMID:31222493
Multiple historical processes obscure phylogenetic relationships in a taxonomically difficult group (Lobariaceae, Ascomycota). PMID:31222061
Sclerotinia sclerotiorum Circumvents Flavonoid Defenses by Catabolizing Flavonol Glycosides and Aglycones. PMID:31221733
Outstanding intraindividual genetic diversity in fissiparous planarians (Dugesia, Platyhelminthes) with facultative sex. PMID:31221097
The large genome size variation in the Hesperis clade was shaped by the prevalent proliferation of DNA repeats and rarer genome downsizing. PMID:31220201
Multiple mutations across the succinate dehydrogenase gene complex are associated with boscalid resistance in Didymella tanaceti in pyrethrum. PMID:31220147
Protist diversity and community assembly in surface sediments of the South China Sea. PMID:31218846
Nanopore Sequencing Significantly Improves Genome Assembly of the Protozoan Parasite Trypanosoma cruzi. PMID:31218350
Ancestral range reconstruction of remote oceanic island species of Plantago (Plantaginaceae) reveals differing scales and modes of dispersal. PMID:31217659
Pulcherrimin formation controls growth arrest of the Bacillus subtilis biofilm. PMID:31217292
Isolation of a Novel Reassortant Highly Pathogenic Avian Influenza (H5N2) Virus in Egypt. PMID:31216712
Potential of Transcript Editing Across Mitogenomes of Early Land Plants Shows Novel and Familiar Trends. PMID:31216623
Comparative analysis of the complete chloroplast genomes of seven Populus species: Insights into alternative female parents of Populus tomentosa. PMID:31216332
Comparative genomics of Mycobacterium mucogenicum and Mycobacterium neoaurum clade members emphasizing tRNA and non-coding RNA. PMID:31215393
The Four FAD-Dependent Histone Demethylases of Arabidopsis Are Differently Involved in the Control of Flowering Time. PMID:31214214
Diet assessment of two land planarian species using high-throughput sequencing data. PMID:31213615
A new species of the genus Cristimenes Ďuriš & Horká, 2017 (Decapoda, Caridea, Palaemonidae). PMID:31210742
Morphological and molecular study on Yininemertespratensis (Nemertea, Pilidiophora, Heteronemertea) from the Han River Estuary, South Korea, and its phylogenetic position within the family Lineidae. PMID:31210741
Characterization of intellectual disability and autism comorbidity through gene panel sequencing. PMID:31209962
Identifying Clusters of High Confidence Homologies in Multiple Sequence Alignments. PMID:31209473
Transcriptome-based molecular systematics: Rhodnius montenegrensis (Triatominae) and its position within the Rhodnius prolixus-Rhodnius robustus cryptic-species complex. PMID:31208458
Diversity of "Ca. Micrarchaeota" in Two Distinct Types of Acidic Environments and Their Associations with Thermoplasmatales. PMID:31208064
Is a mixture of arbuscular mycorrhizal fungi better for plant growth than single-species inoculants? PMID:31203456
Association between the oral microbiome and brain resting state connectivity in smokers. PMID:31201984
Dates and rates in grape's plastomes: evolution in slow motion. PMID:31201544
Mesozoic mitogenome rearrangements and freshwater mussel (Bivalvia: Unionoidea) macroevolution. PMID:31201385
Genomic signatures of heterokaryosis in the oomycete pathogen Bremia lactucae. PMID:31201315
The Complete Chloroplast Genomes of Punica granatum and a Comparison with Other Species in Lythraceae. PMID:31200508
Updated unified phylogenetic classification system and revised nomenclature for Newcastle disease virus. PMID:31200111
Plastome phylogenomics and characterization of rare genomic changes as taxonomic markers in plastome groups 1 and 2 Poeae (Pooideae; Poaceae). PMID:31198631
Emergence of plasmid stability under non-selective conditions maintains antibiotic resistance. PMID:31197163
Improved phylogenomic sampling of free-living nematodes enhances resolution of higher-level nematode phylogeny. PMID:31195978
HIV co-infection is associated with increased transmission risk in patients with chronic hepatitis C virus. PMID:31194901
Coding palindromes in mitochondrial genes of Nematomorpha. PMID:31194871
An emerging new fowl adenovirus genotype. PMID:31193583
Mitochondrial Architecture Rearrangements Produce Asymmetrical Nonadaptive Mutational Pressures That Subvert the Phylogenetic Reconstruction in Isopoda. PMID:31192351
Subcellular Compartments Interplay for Carbon and Nitrogen Allocation in Chromera velia and Vitrella brassicaformis. PMID:31192348
High Resolution Mapping of Rph MBR1012 Conferring Resistance to Puccinia hordei in Barley (Hordeum vulgare L.). PMID:31191570
Functional Analysis of the PgCesA3 White Spruce Cellulose Synthase Gene Promoter in Secondary Xylem. PMID:31191566
Characterization of New Recombinant Forms of HIV-1 From the Comunitat Valenciana (Spain) by Phylogenetic Incongruence. PMID:31191463
A regional study of the genus Phyllopsora (Ramalinaceae) in Asia and Melanesia. PMID:31191113
Evolution and comparative genomics of the most common Trichoderma species. PMID:31189469
Mitochondrial genomes of genus Atta (Formicidae: Myrmicinae) reveal high gene organization and giant intergenic spacers. PMID:31188925
Genomic and phenotypic consequences of two independent secondary contact zones between allopatric lineages of the anadromous ice goby Leucopsarion petersii. PMID:31186532
Substrate preference of an ABC importer corresponds to selective growth on β-(1,6)-galactosides in Bifidobacterium animalis subsp. lactis. PMID:31186348
Genetic and Genomic Analyses Reveal Boundaries between Species Closely Related to Cryptococcus Pathogens. PMID:31186317
Directed Repeats Co-occur with Few Short-Dispersed Repeats in Plastid Genome of a Spikemoss, Selaginella vardei (Selaginellaceae, Lycopodiopsida). PMID:31185895
Complete mitochondrial genomes of eight seahorses and pipefishes (Syngnathiformes: Syngnathidae): insight into the adaptive radiation of syngnathid fishes. PMID:31185889
Insight into picophytoplankton diversity of the subarctic White Sea-The first recording of Pedinophyceae in environmental DNA. PMID:31184446
RocS drives chromosome segregation and nucleoid protection in Streptococcus pneumoniae. PMID:31182798
Two intracellular and cell type-specific bacterial symbionts in the placozoan Trichoplax H2. PMID:31182796
Orb-weaving spider Araneus ventricosus genome elucidates the spidroin gene catalogue. PMID:31182776
Characterization of the Complete Mitochondrial Genome of a Whipworm Trichuris skrjabini (Nematoda: Trichuridae). PMID:31181837
The Influence of Microfungi on the Mycelial Growth of Ectomycorrhizal Fungus Tricholoma matsutake. PMID:31181710
Hepatitis B virus reverse transcriptase polymorphisms between treated and treatment-naïve chronically infected patients. PMID:31179360
Switching the Post-translational Modification of Translation Elongation Factor EF-P. PMID:31178848
Distinct YFV Lineages Co-circulated in the Central-Western and Southeastern Brazilian Regions From 2015 to 2018. PMID:31178835
Molecular identification of spotted fever group Rickettsia in ticks collected from dogs and small ruminants in Greece. PMID:31175472
Shortcomings of Phylogenetic Studies on Recent Radiated Insular Groups: A Meta-Analysis Using Cabo Verde Biodiversity. PMID:31174340
Resolving MiSeq-Generated Ambiguities in HLA-DPB1 Typing by Using the Oxford Nanopore Technology. PMID:31173929
The breadth of HIV-1 neutralizing antibodies depends on the conservation of key sites in their epitopes. PMID:31170145
The GMC superfamily of oxidoreductases revisited: analysis and evolution of fungal GMC oxidoreductases. PMID:31168323
Comprehensive Characterization of the Human Endogenous Retrovirus HERV-K(HML-6) Group: Overview of Structure, Phylogeny, and Contribution to the Human Genome. PMID:31167914
The antenna-like domain of the cyanobacterial ferrochelatase can bind chlorophyll and carotenoids in an energy-dissipative configuration. PMID:31167780
Ground beef microbiome changes with antimicrobial decontamination interventions and product storage. PMID:31166992
A comparison of termite assemblages from West African savannah and forest ecosystems using morphological and molecular markers. PMID:31166963
Co-subsistence of avian influenza virus subtypes of low and high pathogenicity in Bangladesh: Challenges for diagnosis, risk assessment and control. PMID:31165743
Temperate Bacteriophages from Chronic Pseudomonas aeruginosa Lung Infections Show Disease-Specific Changes in Host Range and Modulate Antimicrobial Susceptibility. PMID:31164451
A natural point mutation in the bitter taste receptor TAS2R16 causes inverse agonism of arbutin in lemur gustation. PMID:31161904
Genome-wide survey and expression analyses of the GRAS gene family in Brassica napus reveals their roles in root development and stress response. PMID:31161396
Evidence for frequency-dependent selection maintaining polymorphism in the Batesian mimic Papilio polytes in multiple islands in the Ryukyus, Japan. PMID:31161014
Genetic diversity of CHC22 clathrin impacts its function in glucose metabolism. PMID:31159924
Molecular probes for the identification of avian Haemoproteus and Leucocytozoon parasites in tissue sections by chromogenic in situ hybridization. PMID:31159851
The Complete Chloroplast Genome of Euphrasia regelii, Pseudogenization of ndh Genes and the Phylogenetic Relationships Within Orobanchaceae. PMID:31156705
SOHLHs Might Be Gametogenesis-Specific bHLH Transcriptional Regulation Factors in Crassostrea gigas. PMID:31156465
Characterization of the complete mitochondrial genome of Uvitellina sp., representative of the family Cyclocoelidae and phylogenetic implications. PMID:31154527
Pheromones and Barcoding Delimit Boundaries between Cryptic Species in the Primitive Moth Genus Eriocrania (Lepidoptera: Eriocraniidae). PMID:31152352
Optimizing the Production of Nursery-Based Biological Soil Crusts for Restoration of Arid Land Soils. PMID:31152015
Preventing an Antigenically Disruptive Mutation in Egg-Based H3N2 Seasonal Influenza Vaccines by Mutational Incompatibility. PMID:31151913
Exploring protein myristoylation in Toxoplasma gondii. PMID:31150653
Comparative genome analysis indicates high evolutionary potential of pathogenicity genes in Colletotrichum tanaceti. PMID:31150449
Sub-genotype phylogeny of the non-G, non-P genes of genotype 2 Rotavirus A strains. PMID:31150425
The genomes of polyextremophilic cyanidiales contain 1% horizontally transferred genes with diverse adaptive functions. PMID:31149898
Spatial variations of microbial communities in abyssal and hadal sediments across the Challenger Deep. PMID:31149407
Mitochondrial genome diversity and evolution in Branchiopoda (Crustacea). PMID:31149346
A new caruncle-bearing fanged frog (Limnonectes, Dicroglossidae) from Laos and Thailand. PMID:31148931
Plasmodium pseudo-Tyrosine Kinase-like binds PP1 and SERA5 and is exported to host erythrocytes. PMID:31148576
The Impact of Protein Architecture on Adaptive Evolution. PMID:31147689
Curvature induction and membrane remodeling by FAM134B reticulon homology domain assist selective ER-phagy. PMID:31147549
Evolution and functional differentiation of recently diverged phytochelatin synthase genes from Arundo donax L. PMID:31145784
Introduction and Dispersal of Sindbis Virus from Central Africa to Europe. PMID:31142666
Fecal Microbiota Transplantation Controls Murine Chronic Intestinal Inflammation by Modulating Immune Cell Functions and Gut Microbiota Composition. PMID:31142049
Sexual Dichromatism Drives Diversification within a Major Radiation of African Amphibians. PMID:31140573
Four new Ophiostoma species associated with conifer- and hardwood-infesting bark and ambrosia beetles from the Czech Republic and Poland. PMID:31140027
Phylogenomic Approaches to DNA Barcoding of Herbal Medicines: Developing Clade-Specific Diagnostic Characters for Berberis. PMID:31139202
Elucidating Viral Communities During a Phytoplankton Bloom on the West Antarctic Peninsula. PMID:31139164
Reinstatement of the corticioid genus Leifia (Hymenochaetales, Basidiomycota) with a new species L.brevispora from Hubei, Central China. PMID:31139004
A Substrate-Activated Efflux Pump, DesABC, Confers Zeamine Resistance to Dickeya zeae. PMID:31138747
Diversification and collapse of a telomere elongation mechanism. PMID:31138619
Genome-wide identification and classification of MIKC-type MADS-box genes in Streptophyte lineages and expression analyses to reveal their role in seed germination of orchid. PMID:31138149
Whole-Genome Analyses Resolve the Phylogeny of Flightless Birds (Palaeognathae) in the Presence of an Empirical Anomaly Zone. PMID:31135914
A new record of Ganodermatropicum (Basidiomycota, Polyporales) for Thailand and first assessment of optimum conditions for mycelia production. PMID:31130813
Reproductive Capacity Evolves in Response to Ecology through Common Changes in Cell Number in Hawaiian Drosophila. PMID:31130459
A Fast Likelihood Method to Reconstruct and Visualize Ancestral Scenarios. PMID:31127303
Mosaic origin of the eukaryotic kinetochore. PMID:31127038
Horizontal Gene Transfer as an Indispensable Driver for Evolution of Neocallimastigomycota into a Distinct Gut-Dwelling Fungal Lineage. PMID:31126947
Bacterial pseudokinase catalyzes protein polyglutamylation to inhibit the SidE-family ubiquitin ligases. PMID:31123136
GATA and Phytochrome Interacting Factor Transcription Factors Regulate Light-Induced Vindoline Biosynthesis in Catharanthus roseus. PMID:31123092
Epigenetics and transcription regulation during eukaryotic diversification: the saga of TFIID. PMID:31123066
Revisiting the taxonomy and evolution of pathogenicity of the genus Leptospira through the prism of genomics. PMID:31120895
M1CR0B1AL1Z3R-a user-friendly web server for the analysis of large-scale microbial genomics data. PMID:31114912
Modeling Structural Constraints on Protein Evolution via Side-Chain Conformational States. PMID:31114882
MGERT: a pipeline to retrieve coding sequences of mobile genetic elements from genome assemblies. PMID:31114637
Does the Enigmatic Wightia Belong to Paulowniaceae (Lamiales)? PMID:31114599
Proteases Underground: Analysis of the Maize Root Apoplast Identifies Organ Specific Papain-Like Cysteine Protease Activity. PMID:31114592
Phylogeny of Chinese Allium Species in Section Daghestanica and Adaptive Evolution of Allium (Amaryllidaceae, Allioideae) Species Revealed by the Chloroplast Complete Genome. PMID:31114591
A metaanalysis of bat phylogenetics and positive selection based on genomes and transcriptomes from 18 species. PMID:31113885
Early Sex-Chromosome Evolution in the Diploid Dioecious Plant Mercurialis annua. PMID:31113811
A chromosome-level sequence assembly reveals the structure of the Arabidopsis thaliana Nd-1 genome and its gene set. PMID:31112551
Extensive loss of cell-cycle and DNA repair genes in an ancient lineage of bipolar budding yeasts. PMID:31112549
Phylogenomic analysis and revised classification of atypoid mygalomorph spiders (Araneae, Mygalomorphae), with notes on arachnid ultraconserved element loci. PMID:31110925
The use of DNA barcodes to estimate phylogenetic diversity in forest communities of southern China. PMID:31110686
Protoconch enlargement in Western Atlantic turritelline gastropod species following the closure of the Central American Seaway. PMID:31110681
Caste-based differential transcriptional expression of hexamerins in response to a juvenile hormone analog in the red imported fire ant (Solenopsis invicta). PMID:31107891
Characterization of the mitochondrial genome of Analcellicampa xanthosoma gen. et sp. nov. (Hymenoptera: Tenthredinidae). PMID:31106070
Genomic signatures accompanying the dietary shift to phytophagy in polyphagan beetles. PMID:31101123
Broadly neutralizing antibodies from an individual that naturally cleared multiple hepatitis C virus infections uncover molecular determinants for E2 targeting and vaccine design. PMID:31100098
Structural comparison strengthens the higher-order classification of proteases related to chymotrypsin. PMID:31100077
Analysis of an improved Cyanophora paradoxa genome assembly. PMID:31098614
Molecular characterization of a Korean porcine epidemic diarrhea virus strain NB1. PMID:31097871
Host diet and evolutionary history explain different aspects of gut microbiome diversity among vertebrate clades. PMID:31097702
Structural and functional characterization of the PDZ domain of the human phosphatase PTPN3 and its interaction with the human papillomavirus E6 oncoprotein. PMID:31092861
Novel molecular evidence of population structure in Anopheles (Kerteszia) bellator from Brazilian Atlantic Forest. PMID:31090862
Mycobacterium genus and tRNA arrays. PMID:31090860
Multiple Lineages of Dengue Virus Serotype 2 Cosmopolitan Genotype Caused a Local Dengue Outbreak in Hangzhou, Zhejiang Province, China, in 2017. PMID:31089152
Comparative Genomics of Cyanobacterial Symbionts Reveals Distinct, Specialized Metabolism in Tropical Dysideidae Sponges. PMID:31088928
Transcriptome assembly for a colour-polymorphic grasshopper (Gomphocerus sibiricus) with a very large genome size. PMID:31088494
Genome-wide identification of MST, SUT and SWEET family sugar transporters in root parasitic angiosperms and analysis of their expression during host parasitism. PMID:31088371
Genomics-driven discovery of a biosynthetic gene cluster required for the synthesis of BII-Rafflesfungin from the fungus Phoma sp. F3723. PMID:31088369
Match and mismatch between dietary switches and microbial partners in plant sap-feeding insects. PMID:31088273
An Entamoeba-Specific Mitosomal Membrane Protein with Potential Association to the Golgi Apparatus. PMID:31086122
Two Ektaphelenchinae Paramonov, 1964 (Nematoda: Rhabditida) from Iran have tripartite stylet, with similar observations in other species. PMID:31083668
Slow Delivery Immunization Enhances HIV Neutralizing Antibody and Germinal Center Responses via Modulation of Immunodominance. PMID:31080066
Functional diversification of horizontally acquired glycoside hydrolase family 45 (GH45) proteins in Phytophaga beetles. PMID:31077129
Old and young duplicate genes reveal different responses to environmental changes in Arachis duranensis. PMID:31076861
Genome Plasticity in Papillomaviruses and De Novo Emergence of E5 Oncogenes. PMID:31076746
Identification of a gene encoding polygalacturonase expressed specifically in short styles in distylous common buckwheat (Fagopyrum esculentum). PMID:31076649
Positive Selection Evidence in Xylose-Related Genes Suggests Methylglyoxal Reductase as a Target for the Improvement of Yeasts' Fermentation in Industry. PMID:31070742
A preliminary DNA barcode selection for the genus Russula (Russulales, Basidiomycota). PMID:31069120
Large-Scale Genomics Reveals the Genetic Characteristics of Seven Species and Importance of Phylogenetic Distance for Estimating Pan-Genome Size. PMID:31068915
Complete Assembly of Escherichia coli Sequence Type 131 Genomes Using Long Reads Demonstrates Antibiotic Resistance Gene Variation within Diverse Plasmid and Chromosomal Contexts. PMID:31068432
Impact of alignment algorithm on the estimation of pairwise genetic similarity of porcine reproductive and respiratory syndrome virus (PRRSV). PMID:31068211
A computational method for the identification of Dengue, Zika and Chikungunya virus species and genotypes. PMID:31067235
Revision of Acanthotaenia von Linstow, 1903 (Cestoda: Proteocephalidae), parasites of monitors (Varanus spp.), based on morphological and molecular data. PMID:31065829
Noblella thiuni sp. n., a new (singleton) species of minute terrestrial-breeding frog (Amphibia, Anura, Strabomantidae) from the montane forest of the Amazonian Andes of Puno, Peru. PMID:31065457
A phylogenomic rodent tree reveals the repeated evolution of masseter architectures. PMID:31064307
PhyloToL: A Taxon/Gene-Rich Phylogenomic Pipeline to Explore Genome Evolution of Diverse Eukaryotes. PMID:31062861
MAFFT-DASH: integrated protein sequence and structural alignment. PMID:31062021
Tree reconciliation combined with subsampling improves large scale inference of orthologous group hierarchies. PMID:31060495
Dynamic Chloroplast Genome Rearrangement and DNA Barcoding for Three Apiaceae Species Known as the Medicinal Herb "Bang-Poong". PMID:31060231
Evolution of organellar genes of chlorophyte algae: Relevance to phylogenetic inference. PMID:31059557
Incubation and grazing effects on spirotrich ciliate diversity inferred from molecular analyses of microcosm experiments. PMID:31059530
Refining wet lab experiments with in silico searches: A rational quest for diagnostic peptides in visceral leishmaniasis. PMID:31059497
Biosynthesis of Long Chain Alkyl Diols and Long Chain Alkenols in Nannochloropsis spp. (Eustigmatophyceae). PMID:31058972
Unprecedented Parallel Photosynthetic Losses in a Heterotrophic Orchid Genus. PMID:31058965
Absence of evidence is not evidence of absence: Nanopore sequencing and complete assembly of the European lobster (Homarus gammarus) mitogenome uncovers the missing nad2 and a new major gene cluster duplication. PMID:31053062
Egg parasitoids of the tea green leafhopper Empoascaonukii (Hemiptera, Cicadellidae) in Japan, with description of a new species of Anagrus (Hymenoptera, Mymaridae). PMID:31048960
Revision of world Sphecomyia Latreille (Diptera, Syrphidae). PMID:31048958
Sensory receptor repertoire in cyprid antennules of the barnacle Balanus improvisus. PMID:31048879
Human COQ10A and COQ10B are distinct lipid-binding START domain proteins required for coenzyme Q function. PMID:31048406
Comparative analysis of mitochondrial DNA datasets indicates that Toxascaris leonina represents a species complex. PMID:31046831
Lost and Found: Return of the Inverted Repeat in the Legume Clade Defined by Its Absence. PMID:31046101
Myostatin gene promoter: structure, conservation and importance as a target for muscle modulation. PMID:31044074
Differential patterns of ophiostomatoid fungal communities associated with three sympatric Tomicus species infesting pines in south-western China, with a description of four new species. PMID:31043857
Solving the taxonomic identity of Pseudotomentellatristis s.l. (Thelephorales, Basidiomycota) - a multi-gene phylogeny and taxonomic review, integrating ecological and geographical data. PMID:31043855
Striatiguttulaceae, a new pleosporalean family to accommodate Longicorpus and Striatiguttula gen. nov. from palms. PMID:31043854
Convergent recombination cessation between mating-type genes and centromeres in selfing anther-smut fungi. PMID:31043437
Genetic diversity, and description of a new dagger nematode, Xiphinema afratakhtehnsis sp. nov., (Dorylaimida: Longidoridae) in natural forests of southeastern Gorgan, northern Iran. PMID:31042773
Isolation and Characterization of Live Yeast Cells from Ancient Vessels as a Tool in Bio-Archaeology. PMID:31040238
First evidence of cholinesterase-like activity in Basidiomycota. PMID:31039204
Combination of surveillance tools reveals that Yellow Fever virus can remain in the same Atlantic Forest area at least for three transmission seasons. PMID:31038550
Caribbean multi-centre study of Klebsiella pneumoniae: whole-genome sequencing, antimicrobial resistance and virulence factors. PMID:31038449
The molecular basis of monopolin recruitment to the kinetochore. PMID:31037469
Comparative transcriptomics sheds light on differential adaptation and species diversification between two Melastoma species and their F1 hybrid. PMID:31037213
Ectosymbiotic bacteria at the origin of magnetoreception in a marine protist. PMID:31036911
SPARK-MSNA: Efficient algorithm on Apache Spark for aligning multiple similar DNA/RNA sequences with supervised learning. PMID:31036850
Transcriptomics and differential gene expression in Whitmania pigra (Annelida: Clitellata: Hirudinida: Hirudinidae): Contrasting feeding and fasting modes. PMID:31031937
Diversity and distribution of thermophilic hydrogenogenic carboxydotrophs revealed by microbial community analysis in sediments from multiple hydrothermal environments in Japan. PMID:31030239
Ancient Polyploidy and Genome Evolution in Palms. PMID:31028709
Divergent Fine-Scale Recombination Landscapes between a Freshwater and Marine Population of Threespine Stickleback Fish. PMID:31028697
NGPhylogeny.fr: new generation phylogenetic services for non-specialists. PMID:31028399
Versatile Oxidase and Dehydrogenase Activities of Bacterial Pyranose 2-Oxidase Facilitate Redox Cycling with Manganese Peroxidase In Vitro. PMID:31028028
Genomic Diversity and Recombination among Xylella fastidiosa Subspecies. PMID:31028021
Genus-wide Leptospira core genome multilocus sequence typing for strain taxonomy and global surveillance. PMID:31026256
CASBench: A Benchmarking Set of Proteins with Annotated Catalytic and Allosteric Sites in Their Structures. PMID:31024751
Co-circulation of genetically distinct highly pathogenic avian influenza A clade 2.3.4.4 (H5N6) viruses in wild waterfowl and poultry in Europe and East Asia, 2017-18. PMID:31024736
Biogeography of Cyanobacterial isiA Genes and Their Link to Iron Availability in the Ocean. PMID:31024472
Fatty Acid and Hopanoid Adaption to Cold in the Methanotroph Methylovulum psychrotolerans. PMID:31024466
Genomic and Physiological Traits of the Marine Bacterium Alcaligenes aquatilis QD168 Isolated From Quintero Bay, Central Chile, Reveal a Robust Adaptive Response to Environmental Stressors. PMID:31024465
Environmental DNA metabarcoding to detect pathogenic Leptospira and associated organisms in leptospirosis-endemic areas of Japan. PMID:31024059
Genome constitution and evolution of Elytrigia lolioides inferred from Acc1, EF-G, ITS, TrnL-F sequences and GISH. PMID:31023230
The first identification of complete Eph-ephrin signalling in ctenophores and sponges reveals a role for neofunctionalization in the emergence of signalling domains. PMID:31023220
Evidence of a largely staminal origin for the Jaltomata calliantha (Solanaceae) floral corona. PMID:31019674
Effect of CO2 Concentration on Uptake and Assimilation of Inorganic Carbon in the Extreme Acidophile Acidithiobacillus ferrooxidans. PMID:31019493
Large, Stable, Contemporary Interspecies Recombination Events in Circulating Human Herpes Simplex Viruses. PMID:31016321
Comparative Chloroplast Genomes of Sorghum Species: Sequence Divergence and Phylogenetic Relationships. PMID:31016191
Genomic, ecological, and morphological approaches to investigating species limits: A case study in modern taxonomy from Tropical Eastern Pacific surgeonfishes. PMID:31015983
Gene markers for exon capture and phylogenomics in ray-finned fishes. PMID:31015981
Molecular and morphological evidence for the identity of two nominal species of Astegopteryx (Hemiptera, Aphididae, Hormaphidinae). PMID:31015776
Low yield and abiotic origin of N2O formed by the complete nitrifier Nitrospira inopinata. PMID:31015413
Asgard archaea capable of anaerobic hydrocarbon cycling. PMID:31015394
A phylogenomic framework, evolutionary timeline and genomic resources for comparative studies of decapod crustaceans. PMID:31014217
The Genome of Blue-Capped Cordon-Bleu Uncovers Hidden Diversity of LTR Retrotransposons in Zebra Finch. PMID:31013951
Confident phylogenetic identification of uncultured prokaryotes through long read amplicon sequencing of the 16S-ITS-23S rRNA operon. PMID:31012228
Complete genome sequence of natural rubber-degrading, gram-negative bacterium, Rhizobacter gummiphilus strain NS21T. PMID:31011550
No longer locally extinct? Tracing the origins of a lion (Panthera leo) living in Gabon. PMID:31007636
In silico prediction and characterisation of secondary metabolite clusters in the plant pathogenic fungus Verticillium dahliae. PMID:31004487
Emergence of human infection with Jingmen tick virus in China: A retrospective study. PMID:31003930
Loss of cytoplasmic incompatibility and minimal fecundity effects explain relatively low Wolbachia frequencies in Drosophila mauritiana. PMID:31001816
Fungal Diversity and Enzyme Activity Associated with the Macroalgae, Agarum clathratum. PMID:31001450
Diverse Large HIV-1 Non-subtype B Clusters Are Spreading Among Men Who Have Sex With Men in Spain. PMID:31001231
Whole Genome Sequencing and Re-sequencing of the Sable Antelope (Hippotragus niger): A Resource for Monitoring Diversity in ex Situ and in Situ Populations. PMID:31000506
Mitovirus and Mitochondrial Coding Sequences from Basal Fungus Entomophthora muscae. PMID:30999558
AutoMLST: an automated web server for generating multi-locus species trees highlighting natural product potential. PMID:30997504
An efficient and robust laboratory workflow and tetrapod database for larger scale environmental DNA studies. PMID:30997489
Exploring the microbiota and metabolites of traditional rice beer varieties of Assam and their functionalities. PMID:30997311
The discovery of three new hare lagoviruses reveals unexplored viral diversity in this genus. PMID:30997155
Phylogenetic distribution, biogeography and the effects of land management upon bacterial non-specific Acid phosphatase Gene diversity and abundance. PMID:30996484
Near full-length HIV-1 subtype B sequences from the early South African epidemic, detecting a BD unique recombinant form (URF) from a sample in 1985. PMID:30996293
Functional Analysis of Conserved Transmembrane Charged Residues and a Yeast Specific Extracellular Loop of the Plasma Membrane Na+/H+ Antiporter of Schizosaccharomyces pombe. PMID:30996236
Molecular phylogenetic species delimitation in the aquatic genus Ottelia (Hydrocharitaceae) reveals cryptic diversity within a widespread species. PMID:30993554
Whole-genome Sequencing Provides Data for Stratifying Infection Prevention and Control Management of Nosocomial Influenza A. PMID:30993315
Molecular convergence and positive selection associated with the evolution of symbiont transmission mode in stony corals. PMID:30991927
Evolution of buffering in a genetic circuit controlling plant stem cell proliferation. PMID:30988512
Genome analysis of Paenibacillus polymyxa A18 gives insights into the features associated with its adaptation to the termite gut environment. PMID:30988376
Interpreting Viral Deep Sequencing Data with GLUE. PMID:30987147
Tracking temporal shifts in area, biomes, and pollinators in the radiation of Salvia (sages) across continents: leveraging anchored hybrid enrichment and targeted sequence data. PMID:30986330
The plastid genome and its implications in barcoding specific-chemotypes of the medicinal herb Pogostemon cablin in China. PMID:30986249
Human LC3 and GABARAP subfamily members achieve functional specificity via specific structural modulations. PMID:30982432
Population Genetics of Paramecium Mitochondrial Genomes: Recombination, Mutation Spectrum, and Efficacy of Selection. PMID:30980669
Molecular and Phenotypic Characterization of Nannizzia (Arthrodermataceae). PMID:30976955
The EMBL-EBI search and sequence analysis tools APIs in 2019. PMID:30976793
Multi-gene phylogeny and divergence estimations for Evaniidae (Hymenoptera). PMID:30976469
Genomic signatures of introgression between commercial and native bumblebees, Bombus terrestris, in western Iberian Peninsula-Implications for conservation and trade regulation. PMID:30976302
Comparative genomic analysis of Bacillus paralicheniformis MDJK30 with its closely related species reveals an evolutionary relationship between B. paralicheniformis and B. licheniformis. PMID:30975079
ORTHOSCOPE Analysis Reveals the Presence of the Cellulose Synthase Gene in All Tunicate Genomes but Not in Other Animal Genomes. PMID:30974905
Characterization of the Chloroplast Genome of Trentepohlia odorata (Trentepohliales, Chlorophyta), and Discussion of its Taxonomy. PMID:30974837
Pacbio Sequencing Reveals Identical Organelle Genomes between American Cranberry (Vaccinium macrocarpon Ait.) and a Wild Relative. PMID:30974783
To what extent may peptide receptor gene diversity/complement contribute to functional flexibility in a simple pattern-generating neural network? PMID:30974344
Quantitative and qualitative evaluation of the impact of the G2 enhancer, bead sizes and lysing tubes on the bacterial community composition during DNA extraction from recalcitrant soil core samples based on community sequencing and qPCR. PMID:30973938
Species delimitation in Amblyosyllis (Annelida, Syllidae). PMID:30970025
Specificity of expression of TaCKX family genes in developing plants of wheat and their co-operation within and among organs. PMID:30969991
Microbial eukaryotes in the suboxic chemosynthetic ecosystem of Movile Cave, Romania. PMID:30969022
Long-term benefit of Microbiota Transfer Therapy on autism symptoms and gut microbiota. PMID:30967657
Genomic signatures of G-protein-coupled receptor expansions reveal functional transitions in the evolution of cephalopod signal transduction. PMID:30963849
Study of Legionella Effector Domains Revealed Novel and Prevalent Phosphatidylinositol 3-Phosphate Binding Domains. PMID:30962397
A hybrid de novo genome assembly of the honeybee, Apis mellifera, with chromosome-length scaffolds. PMID:30961563
Organellar DNA Polymerases in Complex Plastid-Bearing Algae. PMID:30959949
Freeze Tolerance in Sculpins (Pisces; Cottoidea) Inhabiting North Pacific and Arctic Oceans: Antifreeze Activity and Gene Sequences of the Antifreeze Protein. PMID:30959891
New R-Based Methodology to Optimize the Identification of Root Endophytes against Heterobasidion parviporum. PMID:30959873
New Zealand Tree and Giant Wētā (Orthoptera) Transcriptomics Reveal Divergent Selection Patterns in Metabolic Loci. PMID:30957857
Biological invasions increase the richness of arbuscular mycorrhizal fungi from a Hawaiian subtropical ecosystem. PMID:30956539
The Long Non-Coding RNA lep-5 Promotes the Juvenile-to-Adult Transition by Destabilizing LIN-28. PMID:30956008
Origin and evolution of papillomavirus (onco)genes and genomes. PMID:30955499
Hydrogen Peroxide Production of Group A Streptococci (GAS) is emm-Type Dependent and Increased at Low Temperatures. PMID:30955044
Root traits and belowground herbivores relate to plant-soil feedback variation among congeners. PMID:30952863
Filamentous phages: masters of a microbial sharing economy. PMID:30952693
Fungal Keratitis Caused by Colletotrichum dematium: Case Study and Review. PMID:30949880
Aethionema arabicum: a novel model plant to study the light control of seed germination. PMID:30949700
De novo genome assembly of the white-spotted flower chafer (Protaetia brevitarsis). PMID:30949689
Sequencing the Obligate Intracellular Rhabdochlamydia helvetica within Its Tick Host Ixodes ricinus to Investigate Their Symbiotic Relationship. PMID:30949677
hicap: In Silico Serotyping of the Haemophilus influenzae Capsule Locus. PMID:30944197
Development of Phytomonas lipae sp. n. (Kinetoplastea: Trypanosomatidae) in the true bug Coreus marginatus (Heteroptera: Coreidae) and insights into the evolution of life cycles in the genus Phytomonas. PMID:30943229
Calibrating the tree of vipers under the fossilized birth-death model. PMID:30940820
A high-quality apple genome assembly reveals the association of a retrotransposon and red fruit colour. PMID:30940818
Human Influenza A Virus Hemagglutinin Glycan Evolution Follows a Temporal Pattern to a Glycan Limit. PMID:30940704
Neofunctionalization of Mitochondrial Proteins and Incorporation into Signaling Networks in Plants. PMID:30938771
The Unique Evolutionary Trajectory and Dynamic Conformations of DR and IR/DR-Coexisting Plastomes of the Early Vascular Plant Selaginellaceae (Lycophyte). PMID:30937434
Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation. PMID:30936548
Broad-spectrum enzymatic inhibition of CRISPR-Cas12a. PMID:30936531
An Acid Up-Regulated Surface Protein of Lactobacillus paracasei Strain GCRL 46 is Phylogenetically Related to the Secreted Glucan- (GpbB) and Immunoglobulin-Binding (SibA) Protein of Pathogenic Streptococci. PMID:30935131
Metagenomes of a Freshwater Charavirus from British Columbia Provide a Window into Ancient Lineages of Viruses. PMID:30934644
Illumina sequencing of clinical samples for virus detection in a public health laboratory. PMID:30931974
Comparative Genomics Between Saccharomyces kudriavzevii and S. cerevisiae Applied to Identify Mechanisms Involved in Adaptation. PMID:30930934
Comparative Genomics Analysis Provides New Insight Into Molecular Basis of Stomatal Movement in Kalanchoë fedtschenkoi. PMID:30930922
Multiple Recombination Events Drive the Current Genetic Structure of Xanthomonas perforans in Florida. PMID:30930868
Sisymbriumlinifolium and Sisymbriopsisschugnana (Brassicaceae), two new records from Xinjiang, China. PMID:30930652
Novel Molecular Signatures of Chikungunya Virus in Puerto Rico. PMID:30924912
Two Independent Plastid accD Transfers to the Nuclear Genome of Gnetum and Other Insights on Acetyl-CoA Carboxylase Evolution in Gymnosperms. PMID:30924880
Exposure to a Healthy Gut Microbiome Protects Against Reproductive and Metabolic Dysregulation in a PCOS Mouse Model. PMID:30924862
The specific status of Melastoma kudoi (Melastomataceae, Melastomeae). PMID:30923953
Phylogenetic Distribution and Diversity of Bacterial Pseudo-Orthocaspases Underline Their Putative Role in Photosynthesis. PMID:30923531
Lower Respiratory Tract Microbiome and Resistome of Bovine Respiratory Disease Mortalities. PMID:30918994
The Genome and mRNA Transcriptome of the Cosmopolitan Calanoid Copepod Acartia tonsa Dana Improve the Understanding of Copepod Genome Size Evolution. PMID:30918947
Pharmacological and molecular dynamics analyses of differences in inhibitor binding to human and nematode PDE4: Implications for management of parasitic nematodes. PMID:30917179
New insights into the structures and interactions of bacterial Y-family DNA polymerases. PMID:30916324
Identification of genes involved in shea butter biosynthesis from Vitellaria paradoxa fruits through transcriptomics and functional heterologous expression. PMID:30915502
Combined Effects of Three High-Energy Charged Particle Beams Important for Space Flight on Brain, Behavioral and Cognitive Endpoints in B6D2F1 Female and Male Mice. PMID:30914962
Two new endophytic Colletotrichum species from Nothapodytespittosporoides in China. PMID:30914842
Hce2 domain-containing effectors contribute to the full virulence of Valsa mali in a redundant manner. PMID:30912612
Map-based cloning and characterization of BoCCD4, a gene responsible for white/yellow petal color in B. oleracea. PMID:30909886
Functional RNA Structures in the 3'UTR of Tick-Borne, Insect-Specific and No-Known-Vector Flaviviruses. PMID:30909641
Diversified local CRISPR-Cas immunity to viruses of Sulfolobus islandicus. PMID:30905292
Inadvertent Paralog Inclusion Drives Artifactual Topologies and Timetree Estimates in Phylogenomics. PMID:30903171
Nucleotide Second Messenger-Based Signaling in Extreme Acidophiles of the Acidithiobacillus Species Complex: Partition Between the Core and Variable Gene Complements. PMID:30899248
Phylogeography of Bellamya (Mollusca: Gastropoda: Viviparidae) snails on different continents: contrasting patterns of diversification in China and East Africa. PMID:30898091
Unassigned diversity of planktonic foraminifera from environmental sequencing revealed as known but neglected species. PMID:30897140
A Novel Orthohepadnavirus Identified in a Dead Maxwell's Duiker (Philantomba maxwellii) in Taï National Park, Côte d'Ivoire. PMID:30893858
AYbRAH: a curated ortholog database for yeasts and fungi spanning 600 million years of evolution. PMID:30893420
Molecular characterisation of the emerging measles virus from Roraima state, Brazil, 2018. PMID:30892375
Extensive conservation of the proneuropeptide and peptide prohormone complement in mollusks. PMID:30890731
A Parasitic Arsenic Cycle That Shuttles Energy from Phytoplankton to Heterotrophic Bacterioplankton. PMID:30890605
Genome-wide identification and characterization of abiotic-stress responsive SOD (superoxide dismutase) gene family in Brassica juncea and B. rapa. PMID:30890148
Global genetic diversity and geographical distribution of Bemisia tabaci and its bacterial endosymbionts. PMID:30889213
Identification of evolutionarily conserved virulence factor by selective pressure analysis of Streptococcus pneumoniae. PMID:30886906
Long-read based assembly and synteny analysis of a reference Drosophila subobscura genome reveals signatures of structural evolution driven by inversions recombination-suppression effects. PMID:30885123
Gram-Positive Bacteria-Like DNA Binding Machineries Involved in Replication Initiation and Termination Mechanisms of Mimivirus. PMID:30884919
Characterization of a Botybirnavirus Conferring Hypovirulence in the Phytopathogenic Fungus Botryosphaeria dothidea. PMID:30884907
Discovery of a highly divergent hepadnavirus in shrews from China. PMID:30884426
An exploration of the links between parasites, trophic ecology, morphology, and immunogenetics in the Lake Tanganyika cichlid radiation. PMID:30880832
Bacterial Analogs of Plant Tetrahydropyridine Alkaloids Mediate Microbial Interactions in a Rhizosphere Model System. PMID:30877115
Evolutionary Comparison of the Chloroplast Genome in the Woody Sonchus Alliance (Asteraceae) on the Canary Islands. PMID:30875850
Local Diversification of Methicillin- Resistant Staphylococcus aureus ST239 in South America After Its Rapid Worldwide Dissemination. PMID:30873127
The Molecular Basis of pH-Modulated HIV gp120 Binding Revealed. PMID:30872918
Diversity and Evolution of Viral Pathogen Community in Cave Nectar Bats (Eonycteris spelaea). PMID:30871070
Phylogeography of the Assassin Bug Sphedanolestes impressicollis in East Asia Inferred From Mitochondrial and Nuclear Gene Sequences. PMID:30870981
Fecal Viral Diversity of Captive and Wild Tasmanian Devils Characterized Using Virion-Enriched Metagenomics and Metatranscriptomics. PMID:30867308
Chikungunya virus infection in Indonesia: a systematic review and evolutionary analysis. PMID:30866835
Expression and regulatory asymmetry of retained Arabidopsis thaliana transcription factor genes derived from whole genome duplication. PMID:30866803
Interspecific delimitation and relationships among four Ostrya species based on plastomes. PMID:30866795
MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization. PMID:30864657
A Phylogenetic and Functional Perspective on Volatile Organic Compound Production by Actinobacteria. PMID:30863793
The Malacca Strait separates distinct faunas of poorly-flying Cautires net-winged beetles. PMID:30863675
A new glassfrog (Centrolenidae) from the Chocó-Andean Río Manduriacu Reserve, Ecuador, endangered by mining. PMID:30863669
Angiosperm-Wide and Family-Level Analyses of AP2/ERF Genes Reveal Differential Retention and Sequence Divergence After Whole-Genome Duplication. PMID:30863419
Mitotic Recombination and Rapid Genome Evolution in the Invasive Forest Pathogen Phytophthora ramorum. PMID:30862749
A congruent topology for deep gastropod relationships. PMID:30862305
Climate is a strong predictor of near-infrared reflectance but a poor predictor of colour in butterflies. PMID:30862288
Redescription of Antetintinnidium mucicola (Claparède and Lachmann, 1858) nov. gen., nov. comb. (Alveolata, Ciliophora, Tintinnina). PMID:30861256
Phylogenetic and morphological studies in Xylodon (Hymenochaetales, Basidiomycota) with the addition of four new species. PMID:30858753
Identifying genes associated with invasive disease in S. pneumoniae by applying a machine learning approach to whole genome sequence typing data. PMID:30858412
Draft genome of Thermomonospora sp. CIT 1 (Thermomonosporaceae) and in silico evidence of its functional role in filter cake biomass deconstruction. PMID:30856245
The complete chloroplast genome sequences of three Spondias species reveal close relationship among the species. PMID:30856242
The complete chloroplast genome of Narcissus poeticus L. (Amaryllidaceae: Amaryllidoideae). PMID:30854464
Evolutionary Patterns of Thylakoid Architecture in Cyanobacteria. PMID:30853950
Four new species of Tremella (Tremellales, Basidiomycota) based on morphology and DNA sequence data. PMID:30853836
Beta vulgaris mitovirus 1 in diverse cultivars of beet and chard. PMID:30853586
RUBY, a Putative Galactose Oxidase, Influences Pectin Properties and Promotes Cell-To-Cell Adhesion in the Seed Coat Epidermis of Arabidopsis. PMID:30852555
Mitochondrial Genomics Reveals Shared Phylogeographic Patterns and Demographic History among Three Periodical Cicada Species Groups. PMID:30850829
Bloodmeal host identification with inferences to feeding habits of a fish-fed mosquito, Aedes baisasi. PMID:30850720
Evolution of Cold Acclimation and Its Role in Niche Transition in the Temperate Grass Subfamily Pooideae. PMID:30850470
Nine new RNA viruses associated with the fire ant Solenopsis invicta from its native range. PMID:30847760
A High-Quality Grapevine Downy Mildew Genome Assembly Reveals Rapidly Evolving and Lineage-Specific Putative Host Adaptation Genes. PMID:30847481
Use of Next Generation Sequencing to study two cowpox virus outbreaks. PMID:30847261
Secondary structure of the segment 5 genomic RNA of influenza A virus and its application for designing antisense oligonucleotides. PMID:30846846
Reactive centre loop dynamics and serpin specificity. PMID:30846766
The agar-specific hydrolase ZgAgaC from the marine bacterium Zobellia galactanivorans defines a new GH16 protein subfamily. PMID:30846563
Molecular epidemiology of hepatitis B virus infection in Norway. PMID:30845915
Using WGS to identify antibiotic resistance genes and predict antimicrobial resistance phenotypes in MDR Acinetobacter baumannii in Tanzania. PMID:30843063
Surveying of acid-tolerant thermophilic lignocellulolytic fungi in Vietnam reveals surprisingly high genetic diversity. PMID:30842513
Environment-dependent fitness gains can be driven by horizontal gene transfer of transporter-encoding genes. PMID:30842288
Comparative genomics reveals origin of MIR159A-MIR159B paralogy, and complexities of PTGS interaction between miR159 and target GA-MYBs in Brassicaceae. PMID:30840147
The Molecular Basis of Freshwater Adaptation in Prawns: Insights from Comparative Transcriptomics of Three Macrobrachium Species. PMID:30840062
Halloween genes in panarthropods and the evolution of the early moulting pathway in Ecdysozoa. PMID:30839709
Description of Myxobolus xiantaoensis n. sp. from the fins of yellow catfish in China: a species previously attributed to Myxobolus physophilus Reuss, 1906 in Chinese records. PMID:30838454
A reptilian endogenous foamy virus sheds light on the early evolution of retroviruses. PMID:30838130
Virus Genomes from Deep Sea Sediments Expand the Ocean Megavirome and Support Independent Origins of Viral Gigantism. PMID:30837339
A phylum-wide survey reveals multiple independent gains of head regeneration in Nemertea. PMID:30836873
Revision of the Afro-Madagascan genus Costularia (Schoeneae, Cyperaceae): infrageneric relationships and species delimitation. PMID:30834188
Phylogeny and circumscription of Dasyphyllum (Asteraceae: Barnadesioideae) based on molecular data with the recognition of a new genus, Archidasyphyllum. PMID:30834184
Extreme mito-nuclear discordance in a peninsular lizard: the role of drift, selection, and climate. PMID:30833746
Wide diversity of methane and short-chain alkane metabolisms in uncultured archaea. PMID:30833729
MetaCHIP: community-level horizontal gene transfer identification through the combination of best-match and phylogenetic approaches. PMID:30832740
In silico analysis of fungal small RNA accumulation reveals putative plant mRNA targets in the symbiosis between an arbuscular mycorrhizal fungus and its host plant. PMID:30832582
Identification of A Novel Picorna-Like Virus, Burpengary Virus, that is Negatively Associated with Chlamydial Disease in the Koala. PMID:30832350
Uncovering carbohydrate metabolism through a genotype-phenotype association study of 56 lactic acid bacteria genomes. PMID:30830251
Insights into the Genomics of Clownfish Adaptive Radiation: Genetic Basis of the Mutualism with Sea Anemones. PMID:30830203
Two new entomopathogenic species of Ophiocordyceps in Thailand. PMID:30828254
Synaptic vesicle protein 2: A multi-faceted regulator of secretion. PMID:30826548
Mycobiome Profiles in Breast Milk from Healthy Women Depend on Mode of Delivery, Geographic Location, and Interaction with Bacteria. PMID:30824446
Genomics Analyses of GIV and GVI Noroviruses Reveal the Distinct Clustering of Human and Animal Viruses. PMID:30823663
Phylogenetic relationships within the primitive acanthomorph fish genus Polymixia, with changes to species composition and geographic distributions. PMID:30822351
The MADS-box genes expressed in the inflorescence of Orchis italica (Orchidaceae). PMID:30822337
The complete genome and methylome of Helicobacter pylori hpNEAfrica strain HP14039. PMID:30820249
Tuberpulchrosporum sp. nov., a black truffle of the Aestivum clade (Tuberaceae, Pezizales) from the Balkan peninsula. PMID:30820166
Phylogeny and taxonomy of three new Ctenomyces (Arthrodermataceae, Onygenales) species from China. PMID:30820164
Urban metagenomics uncover antibiotic resistance reservoirs in coastal beach and sewage waters. PMID:30819245
Production of Naturally γ-Aminobutyric Acid-Enriched Cheese Using the Dairy Strains Streptococcus thermophilus 84C and Lactobacillus brevis DSM 32386. PMID:30814980
Neostagonosporellasichuanensis gen. et sp. nov. (Phaeosphaeriaceae, Pleosporales) on Phyllostachysheteroclada (Poaceae) from Sichuan Province, China. PMID:30814907
More pieces to a huge puzzle: Two new Escovopsis species from fungus gardens of attine ants. PMID:30814906
Integrative diagnosis, biological observations, and histopathology of the fig cyst nematode Heteroderafici Kirjanova (1954) associated with Ficuscarica L. in southern Italy. PMID:30814900
Culture of Clinical Specimens Reveals Extensive Diversity of Legionella pneumophila Strains in Arizona. PMID:30814318
Hydrogenotrophic methanogenesis in archaeal phylum Verstraetearchaeota reveals the shared ancestry of all methanogens. PMID:30814220
The evolution of gene regulatory networks controlling Arabidopsis thaliana L. trichome development. PMID:30813891
Transcriptomic analysis confirms differences among nuclear genomes of cryptic earthworm lineages living in sympatry. PMID:30813890
ProtParCon: A Framework for Processing Molecular Data and Identifying Parallel and Convergent Amino Acid Replacements. PMID:30813627
The draft genome of strain cCpun from biting midges confirms insect Cardinium are not a monophyletic group and reveals a novel gene family expansion in a symbiont. PMID:30809447
Aneuploidy and Ethanol Tolerance in Saccharomyces cerevisiae. PMID:30809248
Prevalence of isomeric plastomes and effectiveness of plastome super-barcodes in yews (Taxus) worldwide. PMID:30808961
Evolution of plastid genomes of Holcoglossum (Orchidaceae) with recent radiation. PMID:30808310
Long-term balancing selection drives evolution of immunity genes in Capsella. PMID:30806624
Differences in the path to exit the ribosome across the three domains of life. PMID:30805621
Reannotation of the Ribonucleotide Reductase in a Cyanophage Reveals Life History Strategies Within the Virioplankton. PMID:30804913
Origin and evolution of the octoploid strawberry genome. PMID:30804557
A single test approach for accurate and sensitive detection and taxonomic characterization of Trypanosomes by comprehensive analysis of internal transcribed spacer 1 amplicons. PMID:30802245
The Genome of the Fungal Pathogen Verticillium dahliae Reveals Extensive Bacterial to Fungal Gene Transfer. PMID:30799497
Eukaryotic Acquisition of a Bacterial Operon. PMID:30799038
Effects of a Saccharomyces cerevisiae fermentation product on liver abscesses, fecal microbiome, and resistome in feedlot cattle raised without antibiotics. PMID:30796295
Genome analysis of the rice coral Montipora capitata. PMID:30796282
Evolutionary dynamics of the chromatophore genome in three photosynthetic Paulinella species. PMID:30796245
Metacaspase gene family in Rosaceae genomes: Comparative genomic analysis and their expression during pear pollen tube and fruit development. PMID:30794567
Secreted frizzled related protein is a target of PaxB and plays a role in aquiferous system development in the freshwater sponge, Ephydatia muelleri. PMID:30794564
Intracellular Vesicle Trafficking Genes, RabC-GTP, Are Highly Expressed Under Salinity and Rapid Dehydration but Down-Regulated by Drought in Leaves of Chickpea (Cicer arietinum L.). PMID:30792734
An NAD+ Phosphorylase Toxin Triggers Mycobacterium tuberculosis Cell Death. PMID:30792174
Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants. PMID:30791939
The Diversified O-Superfamily in Californiconus californicus Presents a Conotoxin with Antimycobacterial Activity. PMID:30791616
Bacterial cGAS-like enzymes synthesize diverse nucleotide signals. PMID:30787435
Resistance mechanisms and population structure of highly drug resistant Klebsiella in Pakistan during the introduction of the carbapenemase NDM-1. PMID:30787414
The germ cell marker dead end reveals alternatively spliced transcripts with dissimilar expression. PMID:30787383
Plant-plant interactions influence phylogenetic diversity at multiple spatial scales in a semi-arid mountain rangeland. PMID:30783773
Evolutionary insights of Bean common mosaic necrosis virus and Cowpea aphid-borne mosaic virus. PMID:30783563
Transcriptome-derived investigation of biosynthesis of quinolizidine alkaloids in narrow-leafed lupin (Lupinus angustifolius L.) highlights candidate genes linked to iucundus locus. PMID:30783128
Recombination analysis of Human mastadenovirus C whole genomes. PMID:30778154
Multiple pairs of allelic MLA immune receptor-powdery mildew AVRA effectors argue for a direct recognition mechanism. PMID:30777147
Mechanistic insights into the evolution of DUF26-containing proteins in land plants. PMID:30775457
Genus-Wide Comparative Genomics Analysis of Neisseria to Identify New Genes Associated with Pathogenicity and Niche Adaptation of Neisseria Pathogens. PMID:30775379
Improved genome of Agrobacterium radiobacter type strain provides new taxonomic insight into Agrobacterium genomospecies 4. PMID:30775173
Unraveling the complex genome of Saccharum spontaneum using Polyploid Gene Assembler. PMID:30768175
Integrative taxonomy of a new Redudasys species (Gastrotricha: Macrodasyida) sheds light on the invasion of fresh water habitats by macrodasyids. PMID:30765851
Insights Into the Evolution of Picocyanobacteria and Phycoerythrin Genes (mpeBA and cpeBA). PMID:30761097
Taraxacum kok-saghyz (rubber dandelion) genomic microsatellite loci reveal modest genetic diversity and cross-amplify broadly to related species. PMID:30760810
Understanding the Loss of Maternal Care in Avian Brood Parasites Using Preoptic Area Transcriptome Comparisons in Brood Parasitic and Non-parasitic Blackbirds. PMID:30760540
WGDdetector: a pipeline for detecting whole genome duplication events using the genome or transcriptome annotations. PMID:30760221
Long live the queen, the king and the commoner? Transcript expression differences between old and young in the termite Cryptotermes secundus. PMID:30759161
Long-Term Transcriptional Activity at Zero Growth of a Cosmopolitan Rare Biosphere Member. PMID:30755506
Species of Lepidapedon Stafford, 1904 (Digenea: Lepidapedidae) from deep-sea fishes in the Western Mediterranean: molecular and morphological evidence. PMID:30747406
Morphological, molecular and phylogenetic characterisation of Eimeria macyi Wheat, 1975 (Apicomplexa: Eimeriidae) in the eastern red bat Lasiurus borealis (Müller) from Mississippi, USA. PMID:30747404
The phylogeny of 48 alleles, experimentally verified at 21 kb, and its application to clinical allele detection. PMID:30744658
Utilization of selenocysteine in early-branching fungal phyla. PMID:30742068
SymPortal: A novel analytical framework and platform for coral algal symbiont next-generation sequencing ITS2 profiling. PMID:30740899
Genomes and seroprevalence of severe fever with thrombocytopenia syndrome virus and Nairobi sheep disease virus in Haemaphysalis longicornis ticks and goats in Hubei, China. PMID:30738361
A conserved molecular switch in Class F receptors regulates receptor activation and pathway selection. PMID:30737406
The Singularity of Cetacea Behavior Parallels the Complete Inactivation of Melatonin Gene Modules. PMID:30736361
Insertion Hot Spots of DIRS1 Retrotransposon and Chromosomal Diversifications among the Antarctic Teleosts Nototheniidae. PMID:30736325
In silico re-assessment of a diagnostic RT-qPCR assay for universal detection of Influenza A viruses. PMID:30733500
Transcriptome, proteome and draft genome of Euglena gracilis. PMID:30732613
Chromosome rearrangements shape the diversification of secondary metabolism in the cyclosporin producing fungus Tolypocladium inflatum. PMID:30732559
Comparative genome analysis of Korean field strains of infectious laryngotracheitis virus. PMID:30730935
Morphology and multigene phylogeny of Talaromycesamyrossmaniae, a new synnematous species belonging to the section Trachyspermi from India. PMID:30728745
Lactifluusbicapillus (Russulales, Russulaceae), a new species from the Guineo-Congolian rainforest. PMID:30728744
Fungal Planet description sheets: 785-867. PMID:30728607
Broad host range species in specialised pathogen groups should be treated with suspicion - a case study on Entyloma infecting Ranunculus. PMID:30728604
Unravelling species boundaries in the Aspergillus viridinutans complex (section Fumigati): opportunistic human and animal pathogens capable of interspecific hybridization. PMID:30728603
Removing chaos from confusion: assigning names to common human and animal pathogens in Neocosmospora. PMID:30728601
Multi-locus phylogeny and taxonomy of Exserohilum. PMID:30728600
Malassezia vespertilionis sp. nov.: a new cold-tolerant species of yeast isolated from bats. PMID:30728599
L1 drives IFN in senescent cells and promotes age-associated inflammation. PMID:30728521
Medusavirus, a Novel Large DNA Virus Discovered from Hot Spring Water. PMID:30728258
Punctuated Evolution of Myxoma Virus: Rapid and Disjunct Evolution of a Recent Viral Lineage in Australia. PMID:30728252
Unlocking a high bacterial diversity in the coralloid root microbiome from the cycad genus Dioon. PMID:30726265
Heterophyid trematodes (Digenea) from penguins: A new species of Ascocotyle Looss, 1899, first description of metacercaria of Ascocotyle (A.) patagoniensis Hernández-Orts et al. (2012), and first molecular data. PMID:30723670
Plastome Sequences Help to Resolve Deep-Level Relationships of Populus in the Family Salicaceae. PMID:30723484
A human gut bacterial genome and culture collection for improved metagenomic analyses. PMID:30718869
CasX enzymes comprise a distinct family of RNA-guided genome editors. PMID:30718774
The Mitochondrial Genomes of Neuropteridan Insects and Implications for the Phylogeny of Neuroptera. PMID:30717195
Detecting useful genetic markers and reconstructing the phylogeny of an important medicinal resource plant, Artemisia selengensis, based on chloroplast genomics. PMID:30716116
Potent anti-influenza H7 human monoclonal antibody induces separation of hemagglutinin receptor-binding head domains. PMID:30716060
Whole-Genome Sequence Data Uncover Widespread Heterothallism in the Largest Group of Lichen-Forming Fungi. PMID:30715356
Evidence of Austronesian Genetic Lineages in East Africa and South Arabia: Complex Dispersal from Madagascar and Southeast Asia. PMID:30715341
Extensive Reduction of the Nuclear Pore Complex in Nucleomorphs. PMID:30715330
The bacterial diversity on steam vents from Paricutín and Sapichu volcanoes. PMID:30712189
Primer Design for an Accurate View of Picocyanobacterial Community Structure by Using High-Throughput Sequencing. PMID:30709827
Characterization of the Complete Mitochondrial Genome of Ostertagia trifurcata of Small Ruminants and its Phylogenetic Associations for the Trichostrongyloidea Superfamily. PMID:30709051
A member of the CONSTANS-Like protein family is a putative regulator of reactive oxygen species homeostasis and spaceflight physiological adaptation. PMID:30705745
Structural and Phylogenetic Diversity of Anaerobic Carbon-Monoxide Dehydrogenases. PMID:30705673
Evolution of sex determination and heterogamety changes in section Otites of the genus Silene. PMID:30705300
The antimicrobial potential of Streptomyces from insect microbiomes. PMID:30705269
Taxon-specific expansion and loss of tektins inform metazoan ciliary diversity. PMID:30704394
The complete chloroplast genomes of three Betulaceae species: implications for molecular phylogeny and historical biogeography. PMID:30701138
SNARE Proteins LjVAMP72a and LjVAMP72b Are Required for Root Symbiosis and Root Hair Formation in Lotus japonicus. PMID:30700990
Mitochondrial ancestry of medieval individuals carelessly interred in a multiple burial from southeastern Romania. PMID:30700787
Compound-specific radiocarbon dating and mitochondrial DNA analysis of the Pleistocene hominin from Salkhit Mongolia. PMID:30700710
OrthoMaM v10: Scaling-Up Orthologous Coding Sequence and Exon Alignments with More than One Hundred Mammalian Genomes. PMID:30698751
Fecal Microbiota of Toxigenic Clostridioides difficile-Associated Diarrhea. PMID:30697203
Identification of novel autoinducer-2 receptors in Clostridia reveals plasticity in the binding site of the LsrB receptor family. PMID:30696769
Long Term Diversity and Distribution of Non-photosynthetic Cyanobacteria in Peri-Alpine Lakes. PMID:30692982
A remarkable new species of Pamianthe (Amaryllidaceae) from the Department of Cauca, Colombia. PMID:30692867
Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria. PMID:30692531
Comparative analyses identify genomic features potentially involved in the evolution of birds-of-paradise. PMID:30689847
Prevalence of faecal carriage of extended-spectrum β-lactamase (ESBL)-producing Escherichia coli in veterinary hospital staff and students. PMID:30687506
The Complete Chloroplast Genomes of Echinacanthus Species (Acanthaceae): Phylogenetic Relationships, Adaptive Evolution, and Screening of Molecular Markers. PMID:30687376
Phylogenomics of the Major Tropical Plant Family Annonaceae Using Targeted Enrichment of Nuclear Genes. PMID:30687347
Whole chloroplast genome and gene locus phylogenies reveal the taxonomic placement and relationship of Tripidium (Panicoideae: Andropogoneae) to sugarcane. PMID:30683070
Viroid-infected Tomato and Capsicum Seed Shipments to Australia. PMID:30682856
Quantifying changes in the bacterial thiol redox proteome during host-pathogen interaction. PMID:30682706
Phylomitogenomics reconfirm the phylogenetic position of the genus Metaplax inferred from the two grapsid crabs (Decapoda: Brachyura: Grapsoidea). PMID:30682071
Symbiont type and environmental factors affect transcriptome-wide gene expression in the coral Montipora capitata. PMID:30680121
New Viruses from the Ectoparasite Mite Varroa destructor Infesting Apis mellifera and Apis cerana. PMID:30678330
PVTree: A Sequential Pattern Mining Method for Alignment Independent Phylogeny Reconstruction. PMID:30678245
Ask1 and Akt act synergistically to promote ROS-dependent regeneration in Drosophila. PMID:30677014
Illuminating the catalytic core of ectoine synthase through structural and biochemical analysis. PMID:30674920
Biogeography of the Caribbean Cyrtognatha spiders. PMID:30674906
Odontogenic ameloblast-associated (ODAM) is inactivated in toothless/enamelless placental mammals and toothed whales. PMID:30674270
Whole-genome sequence of the bovine blood fluke Schistosoma bovis supports interspecific hybridization with S. haematobium. PMID:30673782
First isolation of West Nile virus in Brazil. PMID:30672980
The β-Lactamase Gene Profile and a Plasmid-Carrying Multiple Heavy Metal Resistance Genes of Enterobacter cloacae. PMID:30671441
A new virus found in garlic virus complex is a member of possible novel genus of the family Betaflexiviridae (order Tymovirales). PMID:30671312
Discovery and Characterization of Mycobacterium basiliense sp. nov., a Nontuberculous Mycobacterium Isolated From Human Lungs. PMID:30671031
Seed size evolution and biogeography of Plukenetia (Euphorbiaceae), a pantropical genus with traditionally cultivated oilseed species. PMID:30670006
Double-Stranded RNA High-Throughput Sequencing Reveals a New Cytorhabdovirus in a Bean Golden Mosaic Virus-Resistant Common Bean Transgenic Line. PMID:30669683
The N-terminal p.(Ser38Cys) TIMP3 mutation underlying Sorsby fundus dystrophy is a founder mutation disrupting an intramolecular disulfide bond. PMID:30668888
Phylogeny and evolution of infectious bursal disease virus circulating in Turkish broiler flocks. PMID:30668778
New Phylogenomic Analysis of the Enigmatic Phylum Telonemia Further Resolves the Eukaryote Tree of Life. PMID:30668767
Newly Discovered Occurrences and Gene Tree of the Extracellular Globins and Linker Chains from the Giant Hexagonal Bilayer Hemoglobin in Metazoans. PMID:30668717
A High-quality Draft Genome Assembly of Sinella curviseta: A Soil Model Organism (Collembola). PMID:30668671
Defining novel plant polyamine oxidase subfamilies through molecular modeling and sequence analysis. PMID:30665356
Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle. PMID:30661755
Classification of human Herpesviridae proteins using Domain-architecture Aware Inference of Orthologs (DAIO). PMID:30660046
Population Genomics Insights into Adaptive Evolution and Ecological Differentiation in Streptomycetes. PMID:30658977
Genomic resources for the Neotropical tree genus Cedrela (Meliaceae) and its relatives. PMID:30658593
Phylodynamic Analysis of Ebola Virus Disease Transmission in Sierra Leone. PMID:30654482
The Chemosensory Receptor Repertoire of a True Shark Is Dominated by a Single Olfactory Receptor Family. PMID:30649300
Microbiota variations in Culex nigripalpus disease vector mosquito of West Nile virus and Saint Louis Encephalitis from different geographic origins. PMID:30643680
SUMO peptidase ULP-4 regulates mitochondrial UPR-mediated innate immunity and lifespan extension. PMID:30642431
Ubiquitin fusion proteins in algae: implications for cell biology and the spread of photosynthesis. PMID:30642248
The Complete Plastid Genome of Magnolia zenii and Genetic Comparison to Magnoliaceae species. PMID:30641990
Gymnurahemecus bulbosus gen. et sp. nov. (Digenea: Aporocotylidae) infecting smooth butterfly rays, Gymnura micrura (Myliobatiformes: Gymnuridae) in the northern Gulf of Mexico, with a taxonomic key and further evidence for monophyly of chondrichthyan blood flukes. PMID:30637469
Complete Genome Sequences of Five Acinetobacter baumannii Phages from Abidjan, Côte d'Ivoire. PMID:30637387
Bremia itoana (Oomycota, Peronosporales), a Specialized Downy Mildew Pathogen on an East Asian Plant, Crepidiastrum sonchifolium (Asteraceae). PMID:30637150
Evaluating the usefulness of alignment filtering methods to reduce the impact of errors on evolutionary inferences. PMID:30634908
Nasal virome of dogs with respiratory infection signs include novel taupapillomaviruses. PMID:30632017
An Extension of the Kimura Two-Parameter Model to the Natural Evolutionary Process. PMID:30631891
Enterococcus faecium TIR-Domain Genes Are Part of a Gene Cluster Which Promotes Bacterial Survival in Blood. PMID:30631364
Phylogenomic Analysis of the Gammaproteobacterial Methanotrophs (Order Methylococcales) Calls for the Reclassification of Members at the Genus and Species Levels. PMID:30631317
First complete chloroplast genomics and comparative phylogenetic analysis of Commiphora gileadensis and C. foliacea: Myrrh producing trees. PMID:30629590
Plastome-Wide Rearrangements and Gene Losses in Carnivorous Droseraceae. PMID:30629170
Plastid Genomes and Proteins Illuminate the Evolution of Eustigmatophyte Algae and Their Bacterial Endosymbionts. PMID:30629162
Fully automated sequence alignment methods are comparable to, and much faster than, traditional methods in large data sets: an example with hepatitis B virus. PMID:30627489
Stout camphor tree genome fills gaps in understanding of flowering plant genome evolution. PMID:30626928
Biosynthetic Gene Content of the 'Perfume Lichens' Evernia prunastri and Pseudevernia furfuracea. PMID:30626017
Exploring tRNA gene cluster in archaea. PMID:30624459
Diversity and Composition of Pelagic Prokaryotic and Protist Communities in a Thin Arctic Sea-Ice Regime. PMID:30623212
Multiple evolutionary routes of the single polar capsule in Thelohanellus species (Myxozoa; Myxobolidae). PMID:30622892
Nine draft genome sequences of Claviceps purpurea s.lat., including C. arundinis, C. humidiphila, and C. cf. spartinae, pseudomolecules for the pitch canker pathogen Fusarium circinatum, draft genome of Davidsoniella eucalypti, Grosmannia galeiformis, Quambalaria eucalypti, and Teratosphaeria destructans. PMID:30622889
Novel primers improve species delimitation in Cercospora. PMID:30622885
Diversity of Chroogomphus (Gomphidiaceae, Boletales) in Europe, and typification of C. rutilus. PMID:30622883
NAC Family Transcription Factors in Tobacco and Their Potential Role in Regulating Leaf Senescence. PMID:30622549
Contribution of Eat1 and Other Alcohol Acyltransferases to Ester Production in Saccharomyces cerevisiae. PMID:30622529
Immune genes are hotspots of shared positive selection across birds and mammals. PMID:30620335
A broadly applicable COI primer pair and an efficient single-tube amplicon library preparation protocol for metabarcoding. PMID:30619549
Glycosyltransferase Family 61 in Liliopsida (Monocot): The Story of a Gene Family Expansion. PMID:30619412
Powdery Mildews Are Characterized by Contracted Carbohydrate Metabolism and Diverse Effectors to Adapt to Obligate Biotrophic Lifestyle. PMID:30619222
Molecular Evolutionary Analyses of the RNA-Dependent RNA Polymerase Region in Norovirus Genogroup II. PMID:30619155
Geographic Distribution and Genetic Diversity of Rice Stripe Mosaic Virus in Southern China. PMID:30619153
Genomic and Genetic Insights Into a Cosmopolitan Fungus, Paecilomyces variotii (Eurotiales). PMID:30619145
Metabolomic Fingerprinting of Salinispora From Atlantic Oceanic Islands. PMID:30619120
Low genetic diversity of Ehrlichia canis associated with high co-infection rates in Rhipicephalus sanguineus (s.l.). PMID:30616670
A reverse-transcription/RNase H based protocol for depletion of mosquito ribosomal RNA facilitates viral intrahost evolution analysis, transcriptomics and pathogen discovery. PMID:30616207
Gliophorusglutinosus sp. nov. (Hygrophoraceae, Agaricales) from Eastern Himalayan region of India. PMID:30613182
Niche-directed evolution modulates genome architecture in freshwater Planctomycetes. PMID:30610231
Triplet-pore structure of a highly divergent TOM complex of hydrogenosomes in Trichomonas vaginalis. PMID:30608924
Epidemiology and genetic diversity of Anaplasma ovis in goats in Corsica, France. PMID:30606253
Genetic Evidence for Two Carbon Fixation Pathways (the Calvin-Benson-Bassham Cycle and the Reverse Tricarboxylic Acid Cycle) in Symbiotic and Free-Living Bacteria. PMID:30602523
Molecular epidemiology of a primarily MSM acute HIV-1 cohort in Bangkok, Thailand and connections within networks of transmission in Asia. PMID:30601598
Two new African siblings of Pulveroboletusravenelii (Boletaceae). PMID:30598620
A new treefrog from Cordillera del Cóndor with comments on the biogeographic affinity between Cordillera del Cóndor and the Guianan Tepuis (Anura, Hylidae, Hyloscirtus). PMID:30598617
Novel genetic code and record-setting AT-richness in the highly reduced plastid genome of the holoparasitic plant Balanophora. PMID:30598433
Comparative chloroplast genomes of Paris Sect. Marmorata: insights into repeat regions and evolutionary implications. PMID:30598104
A benchmark study of sequence alignment methods for protein clustering. PMID:30598070
ABCF ATPases Involved in Protein Synthesis, Ribosome Assembly and Antibiotic Resistance: Structural and Functional Diversification across the Tree of Life. PMID:30597160
De novo transcriptome analyses provide insights into opsin-based photoreception in the lanternshark Etmopterus spinax. PMID:30596723
Bacidiaalbogranulosa (Ramalinaceae, lichenized Ascomycota), a new sorediate lichen from European old-growth forests. PMID:30595657
Genome-wide analyses supported by RNA-Seq reveal non-canonical splice sites in plant genomes. PMID:30594132
Genome wide characterization of barley NAC transcription factors enables the identification of grain-specific transcription factors exclusive for the Poaceae family of monocotyledonous plants. PMID:30592743
Panproteome-wide analysis of antibody responses to whole cell pneumococcal vaccination. PMID:30592459
Amplification and bioinformatics analysis of conserved FAD-binding region of L-amino acid oxidase (LAAO) genes in gastropods compared to other organisms. PMID:30591829
Multigene phylogenetics of Polycephalomyces (Ophiocordycipitaceae, Hypocreales), with two new species from Thailand. PMID:30591711
One Hundred Mitochondrial Genomes of Cicadas. PMID:30590568
Genome rearrangements and selection in multi-chromosome bacteria Burkholderia spp. PMID:30587126
Comparative analysis of the mitochondrial genomes of oriental spittlebug trible Cosmoscartini: insights into the relationships among closely related taxa. PMID:30587118
Microbial metal-sulfide oxidation in inactive hydrothermal vent chimneys suggested by metagenomic and metaproteomic analyses. PMID:30585382
Possible association of Firmicutes in the gut microbiota of patients with major depressive disorder. PMID:30584306
Competition among Nasal Bacteria Suggests a Role for Siderophore-Mediated Interactions in Shaping the Human Nasal Microbiota. PMID:30578265
Characterization update of HIV-1 M subtypes diversity and proposal for subtypes A and D sub-subtypes reclassification. PMID:30577842
Prospective, Real-time Metagenomic Sequencing During Norovirus Outbreak Reveals Discrete Transmission Clusters. PMID:30576430
A DNA barcode reference library for Swiss butterflies and forester moths as a tool for species identification, systematics and conservation. PMID:30576327
Predicting antigenic variants of H1N1 influenza virus based on epidemics and pandemics using a stacking model. PMID:30576319
Genetic exchanges are more frequent in bacteria encoding capsules. PMID:30576310
Integration of genetic and epidemiological data to infer H5N8 HPAI virus transmission dynamics during the 2016-2017 epidemic in Italy. PMID:30575785
The dilemma of bacterial expansins evolution. The unusual case of Streptomyces acidiscabies and Kutzneria sp. 744. PMID:30574264
Enrichment of Verrucomicrobia, Actinobacteria and Burkholderiales drives selection of bacterial community from soil by maize roots in a traditional milpa agroecosystem. PMID:30571782
GI-16 lineage (624/I or Q1), there and back again: The history of one of the major threats for poultry farming of our era. PMID:30571679
Enriching Beneficial Microbial Diversity of Indoor Plants and Their Surrounding Built Environment With Biostimulants. PMID:30568641
New host associations and a novel species for the gall-inducing acacia rust genus Ravenelia in South Africa. PMID:30568534
Koala and Wombat Gammaherpesviruses Encode the First Known Viral NTPDase Homologs and Are Phylogenetically Divergent from All Known Gammaherpesviruses. PMID:30567986
The Expanded Universe of Prokaryotic Argonaute Proteins. PMID:30563906
Molecular characterization of eukaryotic algal communities in the tropical phyllosphere based on real-time sequencing of the 18S rDNA gene. PMID:30563464
GLUE: a flexible software system for virus sequence data. PMID:30563445
A Divergent Hepatitis D-Like Agent in Birds. PMID:30562970
Single-cell copy number variant detection reveals the dynamics and diversity of adaptation. PMID:30562346
Diversity and Ecology of Marine Algicolous Arthrinium Species as a Source of Bioactive Natural Products. PMID:30558255
Evolutionary Analysis of Plastid Genomes of Seven Lonicera L. Species: Implications for Sequence Divergence and Phylogenetic Relationships. PMID:30558106
Bacterial Diversity Associated With the Rhizosphere and Endosphere of Two Halophytes: Glaux maritima and Salicornia europaea. PMID:30555434
Genomewide identification of PPR gene family and prediction analysis on restorer gene in Gossypium. PMID:30555058
Molecular Identification and Antifungal Susceptibility of Clinical Isolates of Sporothrix schenckii Complex in Medellin, Colombia. PMID:30554299
Floral and Foliar Source Affect the Bee Nest Microbial Community. PMID:30552443
Impact of Rearing Conditions on the Ambrosia Beetle's Microbiome. PMID:30551580
A multigene typing system for human adenoviruses reveals a new genotype in a collection of Swedish clinical isolates. PMID:30550551
Profiling grapevine trunk pathogens in planta: a case for community-targeted DNA metabarcoding. PMID:30547761
A phylogenomic resolution of the sea urchin tree of life. PMID:30545284
Cryptic Diversity in Colombian Edible Leaf-Cutting Ants (Hymenoptera: Formicidae). PMID:30545104
A Conserved Glycine Is Identified to be Essential for Desaturase Activity of IpFAD2s by Analyzing Natural Variants from Idesia polycarpa. PMID:30544564
Lateral Gene Transfer Shapes the Distribution of RuBisCO among Candidate Phyla Radiation Bacteria and DPANN Archaea. PMID:30544151
Functional Evolution of Subolesin/Akirin. PMID:30542290
Species recognition in social amoebae. PMID:30541961
The soil organic matter decomposition mechanisms in ectomycorrhizal fungi are tuned for liberating soil organic nitrogen. PMID:30538275
Accelerated pseudogenization of trace amine-associated receptor genes in primates. PMID:30536583
Prot-SpaM: fast alignment-free phylogeny reconstruction based on whole-proteome sequences. PMID:30535314
Plastid Genomes from Diverse Glaucophyte Genera Reveal a Largely Conserved Gene Content and Limited Architectural Diversity. PMID:30534986
Draft Genome Sequence of "Candidatus Moanabacter tarae," Representing a Novel Marine Verrucomicrobial Lineage. PMID:30533726
Complete chloroplast genome sequences of Dioscorea: Characterization, genomic resources, and phylogenetic analyses. PMID:30533315
Regulation of germ cell development by ARI1 family ubiquitin ligases in C. elegans. PMID:30531803
Prevalence and Intra-Family Phylogenetic Divergence of Burkholderiaceae-Related Endobacteria Associated with Species of Mortierella. PMID:30531154
Basal position of two new complete mitochondrial genomes of parasitic Cymothoida (Crustacea: Isopoda) challenges the monophyly of the suborder and phylogeny of the entire order. PMID:30526651
Evolutionary Evidence of Algal Polysaccharide Degradation Acquisition by Pseudoalteromonas carrageenovora 9T to Adapt to Macroalgal Niches. PMID:30524390
Recovery of the Peptidoglycan Turnover Product Released by the Autolysin Atl in Staphylococcus aureus Involves the Phosphotransferase System Transporter MurP and the Novel 6-phospho-N-acetylmuramidase MupG. PMID:30524387
Spirorchis spp. (Digenea: Schistosomatoidea) infecting map turtles (Cryptodira: Emydidae: Graptemys spp.) in southeastern North America: A new species, molecular phylogenies, and key to species. PMID:30523610
Cluster oligonucleotide signatures for rapid identification by sequencing. PMID:30522439
Transmission dynamics of re-emerging rabies in domestic dogs of rural China. PMID:30521641
Drought adaptation in Arabidopsis thaliana by extensive genetic loss-of-function. PMID:30520727
Ice ages and butterflyfishes: Phylogenomics elucidates the ecological and evolutionary history of reef fishes in an endemism hotspot. PMID:30519422
Small copepods could channel missing carbon through metazoan predation. PMID:30519413
Daily changes in phytoplankton lipidomes reveal mechanisms of energy storage in the open ocean. PMID:30518752
A phylogenetic framework of the legume genus Aeschynomene for comparative genetic analysis of the Nod-dependent and Nod-independent symbioses. PMID:30518342
ORTHOSCOPE: An Automatic Web Tool for Phylogenetically Inferring Bilaterian Orthogroups with User-Selected Taxa. PMID:30517749
Genomic Takeover by Transposable Elements in the Strawberry Poison Frog. PMID:30517748
Golden Orbweavers Ignore Biological Rules: Phylogenomic and Comparative Analyses Unravel a Complex Evolution of Sexual Size Dimorphism. PMID:30517732
The Transcriptional landscape of Streptococcus pneumoniae TIGR4 reveals a complex operon architecture and abundant riboregulation critical for growth and virulence. PMID:30517198
Toxoplasma gondii-Induced Long-Term Changes in the Upper Intestinal Microflora during the Chronic Stage of Infection. PMID:30515345
The mitochondrial genome of Endoconidiophora resinifera is intron rich. PMID:30514960
Evidence for divergent patterns of local selection driving venom variation in Mojave Rattlesnakes (Crotalus scutulatus). PMID:30514908
Ancient DNA of Phoenician remains indicates discontinuity in the settlement history of Ibiza. PMID:30514893
Structure-function analysis of Sedolisins: evolution of tripeptidyl peptidase and endopeptidase subfamilies in fungi. PMID:30514213
The Challenges of Analysing Highly Diverse Picobirnavirus Sequence Data. PMID:30513931
Broadened immunity against influenza by vaccination with computationally designed influenza virus N1 neuraminidase constructs. PMID:30510776
Full-length title: NRPPUR database search and in vitro analysis identify an NRPS-PKS biosynthetic gene cluster with a potential antibiotic effect. PMID:30509188
Sequencing of organellar genomes of Gymnomitrion concinnatum (Jungermanniales) revealed the first exception in the structure and gene order of evolutionary stable liverworts mitogenomes. PMID:30509184
Characterization of hepatitis B virus with complex structural variations. PMID:30509169
The Mitochondrial Genomes of Phytophagous Scarab Beetles and Systematic Implications. PMID:30508200
Phylogenomic and single nucleotide polymorphism analyses revealed the hybrid origin of Spondias bahiensis (family Anacardiaceae): de novo genome sequencing and comparative genomics. PMID:30508001
Accurate authentication of Dendrobium officinale and its closely related species by comparative analysis of complete plastomes. PMID:30505665
Contrasting Symbiotic Patterns in Two Closely Related Lineages of Trimembered Lichens of the Genus Peltigera. PMID:30505297
Phylogeny and taxonomic synopsis of PoasubgenusPseudopoa (including Eremopoa and Lindbergella) (Poaceae, Poeae, Poinae). PMID:30505165
New Ceratocystis species associated with rapid death of Metrosideros polymorpha in Hawai'i. PMID:30505000
Diaporthe diversity and pathogenicity revealed from a broad survey of grapevine diseases in Europe. PMID:30504999
Seiridium (Sporocadaceae): an important genus of plant pathogenic fungi. PMID:30504997
Botryosphaeriaceae from Eucalyptus plantations and adjacent plants in China. PMID:30504996
Phaeoacremonium species diversity on woody hosts in the Western Cape Province of South Africa. PMID:30504995
Symptomatic Citrus trees reveal a new pathogenic lineage in Fusarium and two new Neocosmospora species. PMID:30504994
Whole Genome Sequencing detects Inter-Facility Transmission of Carbapenem-resistant Klebsiella pneumoniae. PMID:30503842
Nephromyces Encodes a Urate Metabolism Pathway and Predicted Peroxisomes, Demonstrating That These Are Not Ancient Losses of Apicomplexans. PMID:30500900
Complete mitochondrial genome of Benthodytes marianensis (Holothuroidea: Elasipodida: Psychropotidae): Insight into deep sea adaptation in the sea cucumber. PMID:30500836
Distribution of CR1-like transposable element in woodpeckers (Aves Piciformes): Z sex chromosomes can act as a refuge for transposable elements. PMID:30499043
Phenotypic and genomic comparison of Photorhabdus luminescens subsp. laumondii TT01 and a widely used rifampicin-resistant Photorhabdus luminescens laboratory strain. PMID:30497380
IAA producing fungal endophyte Penicillium roqueforti Thom., enhances stress tolerance and nutrients uptake in wheat plants grown on heavy metal contaminated soils. PMID:30496253
Comparative genomics of HORMA domain-containing proteins in prokaryotes and eukaryotes. PMID:30488757
Comparison of Olfactory Genes in Two Ectropis Species: Emphasis on Candidates Involved in the Detection of Type-II Sex Pheromones. PMID:30487755
Comparative genomics of downy mildews reveals potential adaptations to biotrophy. PMID:30486780
Tracking a serial killer: Integrating phylogenetic relationships, epidemiology, and geography for two invasive meningococcal disease outbreaks. PMID:30485280
Phenotypic and Genomic Properties of a Novel Deep-Lineage Haloalkaliphilic Member of the Phylum Balneolaeota From Soda Lakes Possessing Na+-Translocating Proteorhodopsin. PMID:30483225
Nuclear genome sequence of the plastid-lacking cryptomonad Goniomonas avonlea provides insights into the evolution of secondary plastids. PMID:30482201
Integration of phylogenomics and molecular modeling reveals lineage-specific diversification of toxins in scorpions. PMID:30479892
The genome of an underwater architect, the caddisfly Stenopsyche tienmushanensis Hwang (Insecta: Trichoptera). PMID:30476205
Doublesex Evolution Is Correlated with Social Complexity in Ants. PMID:30476039
Mitogenomics Reveals a Novel Genetic Code in Hemichordata. PMID:30476024
Comparative morphology and evolution of the cnidosac in Cladobranchia (Gastropoda: Heterobranchia: Nudibranchia). PMID:30473719
Coevolution of hytrosaviruses and host immune responses. PMID:30470186
Coral-associated bacteria demonstrate phylosymbiosis and cophylogeny. PMID:30467310
Size does matter: Parallel evolution of adaptive thermal tolerance and body size facilitates adaptation to climate change in domestic cattle. PMID:30464832
Spatial scale-dependent phylogenetic signal in species distributions along geographic and elevation gradients in a mountainous rangeland. PMID:30464810
Core genes in diverse dinoflagellate lineages include a wealth of conserved dark genes with unknown functions. PMID:30464192
The genome of the water strider Gerris buenoi reveals expansions of gene repertoires associated with adaptations to life on the water. PMID:30463532
Giant flagellins form thick flagellar filaments in two species of marine γ-proteobacteria. PMID:30462661
Natural variation of ZmHKT1 affects root morphology in maize at the seedling stage. PMID:30460404
Pilot Safety Evaluation of a Novel Strain of Bacteroides ovatus. PMID:30459813
Evolution of the Symbiosis-Specific GRAS Regulatory Network in Bryophytes. PMID:30459800
Extended Cleavage Specificity of Human Neutrophil Elastase, Human Proteinase 3, and Their Distant Ortholog Clawed Frog PR3-Three Elastases With Similar Primary but Different Extended Specificities and Stability. PMID:30459762
Genome sequences identify three families of Coleoptera as morphologically derived click beetles (Elateridae). PMID:30459416
Mitochondrial genomes of two diplectanids (Platyhelminthes: Monogenea) expose paraphyly of the order Dactylogyridea and extensive tRNA gene rearrangements. PMID:30458858
Shedding light on the polyphyletic behavior of the genus Sterkiella: The importance of ontogenetic and molecular phylogenetic approaches. PMID:30458052
Recruitment of ubiquitin-activating enzyme UBA1 to DNA by poly(ADP-ribose) promotes ATR signalling. PMID:30456359
Peculiar features of the plastids of the colourless alga Euglena longa and photosynthetic euglenophytes unveiled by transcriptome analyses. PMID:30451959
Comparative genomic and functional analyses of four sequenced Bacillus cereus genomes reveal conservation of genes relevant to plant-growth-promoting traits. PMID:30451927
The evolutionary dynamics of microRNAs in domestic mammals. PMID:30451897
Description of Longidorus azarbaijanensis n. sp. (Dorylaimida: Longidoridae) from Iran. PMID:30451438
Description of Aphelenchoides giblindavisi n. sp. (Nematoda: Aphelenchoididae), and Proposal for a New Combination. PMID:30451426
Morphological and Molecular Characterization of Paralongidorus sali Siddiqi, Hooper, and Khan, 1963 with a Description of the First-Stage Juvenile and Male of Longidorus jonesi Siddiqi, 1962 from China. PMID:30451425
Characterization of the TLR Family in Branchiostoma lanceolatum and Discovery of a Novel TLR22-Like Involved in dsRNA Recognition in Amphioxus. PMID:30450099
A large HCV transmission network enabled a fast-growing HIV outbreak in rural Indiana, 2015. PMID:30448155
An evolutionarily conserved non-synonymous SNP in a leucine-rich repeat domain determines anthracnose resistance in watermelon. PMID:30446794
A practical implementation of large transcriptomic data analysis to resolve cryptic species diversity problems in microbial eukaryotes. PMID:30445905
Base-By-Base Version 3: New Comparative Tools for Large Virus Genomes. PMID:30445717
Cytonuclear Coevolution following Homoploid Hybrid Speciation in Aegilops tauschii. PMID:30445640
Genomes of trombidid mites reveal novel predicted allergens and laterally transferred genes associated with secondary metabolism. PMID:30445460
Pathogenesis and genetic characteristics of novel reassortant low-pathogenic avian influenza H7 viruses isolated from migratory birds in the Republic of Korea in the winter of 2016-2017. PMID:30442892
Mollusc genomes reveal variability in patterns of LTR-retrotransposons dynamics. PMID:30442098
Phylotranscriptomics suggests the jawed vertebrate ancestor could generate diverse helper and regulatory T cell subsets. PMID:30442091
Large-Scale Analyses of Site-Specific Evolutionary Rates across Eukaryote Proteomes Reveal Confounding Interactions between Intrinsic Disorder, Secondary Structure, and Functional Domains. PMID:30441862
Evaluating the ontogenetic external morphology of an ectoparasitic Torix tukubana (Hirudinida: Glossiphoniidae), with records of its new host amphibian species. PMID:30426225
The gold-standard genome of Aspergillus niger NRRL 3 enables a detailed view of the diversity of sugar catabolism in fungi. PMID:30425417
Genome-wide identification of LRR-containing sequences and the response of these sequences to nematode infection in Arachis duranensis. PMID:30424729
Assembly of a Complete Mitogenome of Chrysanthemum nankingense Using Oxford Nanopore Long Reads and the Diversity and Evolution of Asteraceae Mitogenomes. PMID:30424578
Epstein-Barr virus BORF2 inhibits cellular APOBEC3B to preserve viral genome integrity. PMID:30420783
Tempo and Mode of Genome Evolution in the Budding Yeast Subphylum. PMID:30415838
Ongoing human chromosome end extension revealed by analysis of BioNano and nanopore data. PMID:30413723
Complete Chloroplast Genome Sequence of Malus hupehensis: Genome Structure, Comparative Analysis, and Phylogenetic Relationships. PMID:30413097
Molecular detection and genetic diversity of avian haemosporidian parasites in Iran. PMID:30412593
Characterization of Campylobacter spp. isolated from wild birds in the Antarctic and Sub-Antarctic. PMID:30412585
Detecting Associations Between Ciliated Protists and Prokaryotes with Culture-Independent Single-Cell Microbiomics: a Proof-of-Concept Study. PMID:30411190
Spread of the florfenicol resistance floR gene among clinical Klebsiella pneumoniae isolates in China. PMID:30410748
Visualization-assisted binning of metagenome assemblies reveals potential new pathogenic profiles in idiopathic travelers' diarrhea. PMID:30409177
Characterization of the Escherichia coli Virulent Myophage ST32. PMID:30405057
Crustacean Genome Exploration Reveals the Evolutionary Origin of White Spot Syndrome Virus. PMID:30404800
Diversity and effect of Trichoderma isolated from the roots of Pinus densiflora within the fairy ring of pine mushroom (Tricholoma matsutake). PMID:30403694
Diversity of Ooencyrtus spp. (Hymenoptera: Encyrtidae) parasitizing the eggs of Stenozygum coloratum (Klug) (Hemiptera: Pentatomidae) with description of two new species. PMID:30403678
Uncovering hidden specific diversity of Andean glassfrogs of the Centrolene buckleyi species complex (Anura: Centrolenidae). PMID:30402351
Three new species of Phanerochaete (Polyporales, Basidiomycota). PMID:30402037
Development of polymorphic microsatellite markers by using de novo transcriptome assembly of Calanthe masuca and C. sinica (Orchidaceae). PMID:30400862
Global Analysis of WOX Transcription Factor Gene Family in Brassica napus Reveals Their Stress- and Hormone-Responsive Patterns. PMID:30400610
Identification and characterization of GH11 xylanase and GH43 xylosidase from the chytridiomycetous fungus, Rhizophlyctis rosea. PMID:30397764
Whole-Genome Sequencing of Russian Neisseria Gonorrhoeae Isolates Related to ST 1407 Genogroup. PMID:30397529
At the confluence of vicariance and dispersal: Phylogeography of cavernicolous springtails (Collembola: Arrhopalitidae, Tomoceridae) codistributed across a geologically complex karst landscape in Illinois and Missouri. PMID:30397468
Evolutionary history of the endemic water shrew Neomys anomalus: Recurrent phylogeographic patterns in semi-aquatic mammals of the Iberian Peninsula. PMID:30397453
Biodiversity explains maximum variation in productivity under experimental warming, nitrogen addition, and grazing in mountain grasslands. PMID:30397450
Nanopore sequencing for rapid diagnostics of salmonid RNA viruses. PMID:30397226
Amplification of Near Full-length HIV-1 Proviruses for Next-Generation Sequencing. PMID:30394382
Molecular Phylogeny, Diversity and Zoogeography of Net-Winged Beetles (Coleoptera: Lycidae). PMID:30388727
Raveneliapiepenbringiae and Raveneliahernandezii, two new rust species on Senegalia (Fabaceae, Mimosoideae) from Panama and Costa Rica. PMID:30386166
A multiscale study of fungal endophyte communities of the foliar endosphere of native rubber trees in Eastern Amazon. PMID:30385829
Comparative genomics reveals the distinct evolutionary trajectories of the robust and complex coral lineages. PMID:30384840
Multiple recombination events between two cytochrome P450 loci contribute to global pyrethroid resistance in Helicoverpa armigera. PMID:30383872
ISU FLUture: a veterinary diagnostic laboratory web-based platform to monitor the temporal genetic patterns of Influenza A virus in swine. PMID:30382842
Genomic discovery of the hypsin gene and biosynthetic pathways for terpenoids in Hypsizygus marmoreus. PMID:30382831
Evolutionary conservation of Y Chromosome ampliconic gene families despite extensive structural variation. PMID:30381290
Comparative Chloroplast Genome Analysis of Rhubarb Botanical Origins and the Development of Specific Identification Markers. PMID:30380708
Comparative Genomics Supports Sex and Meiosis in Diverse Amoebozoa. PMID:30380054
Patterns of avian haemosporidian infections vary with time, but not habitat, in a fragmented Neotropical landscape. PMID:30379912
Molecular phylogeny, ecology and multispecies aggregation behaviour of bombardier beetles in Arizona. PMID:30379830
The evolution of UDP-glycosyl/glucuronosyltransferase 1E (UGT1E) genes in bird lineages is linked to feeding habits but UGT2 genes is not. PMID:30379829
Evidence supporting cryptic species within two sessile microinvertebrates, Limnias melicerta and L. ceratophylli (Rotifera, Gnesiotrocha). PMID:30379825
Validity of genus Perostrongylus Schlegel, 1934 with new data on Perostrongylus falciformis (Schlegel, 1933) in European badgers, Meles meles (Linnaeus, 1758): distribution, life-cycle and pathology. PMID:30376875
Genome sequence of the cauliflower mushroom Sparassis crispa (Hanabiratake) and its association with beneficial usage. PMID:30375506
Dynamic evolution of inverted repeats in Euglenophyta plastid genomes. PMID:30375469
Virus-virus interactions and host ecology are associated with RNA virome structure in wild birds. PMID:30375075
Tuber elevatireticulatum sp. nov., a new species of whitish truffle from Taiwan. PMID:30374836
Divergence of VRN-B3 alleles during the evolution of domesticated wheat. PMID:30374563
Incomplete lineage sorting rather than hybridization explains the inconsistent phylogeny of the wisent. PMID:30374461
Topological assessment of metabolic networks reveals evolutionary information. PMID:30374088
A high-throughput sequencing assay to comprehensively detect and characterize unicellular eukaryotes and helminths from biological and environmental samples. PMID:30373673
Positive Selection in the Evolution of Mammalian CRISPs. PMID:30370448
Phylogenetic and conservation analyses of MFS transporters. PMID:30370203
Proteorhodopsins dominate the expression of phototrophic mechanisms in seasonal and dynamic marine picoplankton communities. PMID:30370186
The Mycobacterial Cell Envelope: A Relict From the Past or the Result of Recent Evolution? PMID:30369911
Penicillium and Talaromyces endophytes from Tillandsia catimbauensis, a bromeliad endemic in the Brazilian tropical dry forest, and their potential for L-asparaginase production. PMID:30368630
Evolution by duplication: paleopolyploidy events in plants reconstructed by deciphering the evolutionary history of VOZ transcription factors. PMID:30367626
Integrative taxonomy resolves taxonomic uncertainty for freshwater mussels being considered for protection under the U.S. Endangered Species Act. PMID:30367102
Whole genome sequencing, variant analysis, phylogenetics, and deep sequencing of Zika virus strains. PMID:30367096
High Levels of CO2 Induce Spoilage by Leuconostoc mesenteroides by Upregulating Dextran Synthesis Genes. PMID:30367004
Genomic Characterization of Cyanophage vB_AphaS-CL131 Infecting Filamentous Diazotrophic Cyanobacterium Aphanizomenon flos-aquae Reveals Novel Insights into Virus-Bacterium Interactions. PMID:30367000
Human MARF1 is an endoribonuclease that interacts with the DCP1:2 decapping complex and degrades target mRNAs. PMID:30364987
Phylotranscriptomic Insights into the Diversification of Endothermic Thunnus Tunas. PMID:30364966
Expansion and Functional Divergence of the SHORT VEGETATIVE PHASE (SVP) Genes in Eudicots. PMID:30364940
Stolonifera from shallow waters in the north-western Pacific: a description of a new genus and two new species within the Arulidae (Anthozoa, Octocorallia). PMID:30364726
Genome-Based Analysis Reveals the Taxonomy and Diversity of the Family Idiomarinaceae. PMID:30364313
Host Phylogeny Is a Major Determinant of Fagaceae-Associated Ectomycorrhizal Fungal Community Assembly at a Regional Scale. PMID:30364168
The complete mitochondrial genomes of two skipper genera (Lepidoptera: Hesperiidae) and their associated phylogenetic analysis. PMID:30361496
Structural Analysis of Variability and Interaction of the N-terminal of the Oncogenic Effector CagA of Helicobacter pylori with Phosphatidylserine. PMID:30360352
DDBJ update: the Genomic Expression Archive (GEA) for functional genomics data. PMID:30357349
Recombination and intraspecific polymorphism for the presence and absence of entire chromosomes in mitochondrial genomes. PMID:30356223
Evolutionary history of a beautiful damselfly, Matrona basilaris, revealed by phylogeographic analyses: the first study of an odonate species in mainland China. PMID:30356221
Group A Rotavirus VP1 Polymerase and VP2 Core Shell Proteins: Intergenotypic Sequence Variation and In Vitro Functional Compatibility. PMID:30355692
Comparative genomic analysis of pyrene-degrading Mycobacterium species: Genomic islands and ring-hydroxylating dioxygenases involved in pyrene degradation. PMID:30353465
A molecular phylogenetic study of the caecal fluke of poultry, Postharmostomum commutatum (= P. gallinum) (Trematoda: Brachylaimidae). PMID:30353231
Haplotyping of Cornus florida and C. kousa chloroplasts: Insights into species-level differences and patterns of plastic DNA variation in cultivars. PMID:30352068
Multi-tissue transcriptomes of caecilian amphibians highlight incomplete knowledge of vertebrate gene families. PMID:30351380
Bacterial biopolymer (polyhydroxyalkanoate) production from low-cost sustainable sources. PMID:30350356
Comparative Transcriptomic Analysis of Two Actinorhizal Plants and the Legume Medicago truncatula Supports the Homology of Root Nodule Symbioses and Is Congruent With a Two-Step Process of Evolution in the Nitrogen-Fixing Clade of Angiosperms. PMID:30349546
Clade-specific diversification dynamics of marine diatoms since the Jurassic. PMID:30349092
New epidemic cluster of pre-extensively drug resistant isolates of Mycobacterium tuberculosis Ural family emerging in Eastern Europe. PMID:30348088
Loss of a conserved salt bridge in bacterial glycosyl hydrolase BgIM-G1 improves substrate binding in temperate environments. PMID:30345395
Bacterial Associates of a Gregarious Riparian Beetle With Explosive Defensive Chemistry. PMID:30344514
The first smut fungus, Thecaphoraanthemidis sp. nov. (Glomosporiaceae), described from Anthemis (Asteraceae). PMID:30344443
Porcine circovirus 2 (PCV-2) genetic variability under natural infection scenario reveals a complex network of viral quasispecies. PMID:30341330
A new species of Hypoprepia from the mountains of central Arizona (Lepidoptera, Erebidae, Arctiinae, Lithosiini). PMID:30337821
Global genetic diversity of var2csa in Plasmodium falciparum with implications for malaria in pregnancy and vaccine development. PMID:30337594
Genomic analysis of Acinetobacter baumannii prophages reveals remarkable diversity and suggests profound impact on bacterial virulence and fitness. PMID:30337588
Mitogenomic data indicate admixture components of Central-Inner Asian and Srubnaya origin in the conquering Hungarians. PMID:30335830
RAVEN 2.0: A versatile toolbox for metabolic network reconstruction and a case study on Streptomyces coelicolor. PMID:30335785
FtsZ of Filamentous, Heterocyst-Forming Cyanobacteria Has a Conserved N-Terminal Peptide Required for Normal FtsZ Polymerization and Cell Division. PMID:30333801
Gut bacterial and fungal communities in ground-dwelling beetles are associated with host food habit and habitat. PMID:30333525
Compositional and Functional Shifts in the Epibiotic Bacterial Community of Shinkaia crosnieri Baba & Williams (a Squat Lobster from Hydrothermal Vents) during Methane-Fed Rearing. PMID:30333383
The evolution of fungal substrate specificity in a widespread group of crustose lichens. PMID:30333206
Multiple Introductions and Antigenic Mismatch with Vaccines May Contribute to Increased Predominance of G12P[8] Rotaviruses in the United States. PMID:30333170
Using Machine Learning To Predict Antimicrobial MICs and Associated Genomic Features for Nontyphoidal Salmonella. PMID:30333126
WRKY transcription factors in legumes. PMID:30332991
Genomic Analysis of Lassa Virus during an Increase in Cases in Nigeria in 2018. PMID:30332564
RNA Viruses in Blechomonas (Trypanosomatidae) and Evolution of Leishmaniavirus. PMID:30327446
Recovery of novel association loci in Arabidopsis thaliana and Drosophila melanogaster through leveraging INDELs association and integrated burden test. PMID:30325920
Firefly genomes illuminate parallel origins of bioluminescence in beetles. PMID:30324905
Ophiostomatoid fungi associated with pines infected by Bursaphelenchusxylophilus and Monochamusalternatus in China, including three new species. PMID:30323707
Characterization of the complete mitochondrial genome of Parabreviscolexniepini Xi et al., 2018 (Cestoda, Caryophyllidea). PMID:30323705
Host-pathogen biotic interactions shaped vitamin K metabolism in Archaeplastida. PMID:30323231
Genome-Wide Analysis of the NAC Transcription Factor Gene Family Reveals Differential Expression Patterns and Cold-Stress Responses in the Woody Plant Prunus mume. PMID:30322087
A Novel Subfamily of Bacterial AAT-Fold Basic Amino Acid Decarboxylases and Functional Characterization of Its First Representative: Pseudomonas aeruginosa LdcA. PMID:30321344
Three New Genome Assemblies Support a Rapid Radiation in Musa acuminata (Wild Banana). PMID:30321324
Glutathione-S-Transferases in the Olfactory Organ of the Noctuid Moth Spodoptera littoralis, Diversity and Conservation of Chemosensory Clades. PMID:30319435
Factors driving effective population size and pan-genome evolution in bacteria. PMID:30314447
Genetic, evolutionary and phylogenetic aspects of the plastome of annatto (Bixa orellana L.), the Amazonian commercial species of natural dyes. PMID:30310983
Broad phylogenetic analysis of cation/proton antiporters reveals transport determinants. PMID:30310075
Surveillance of transmitted HIV-1 antiretroviral drug resistance in the context of decentralized HIV care in Senegal and the Ebola outbreak in Guinea. PMID:30309385
Recurring and Adaptable Binding Motifs in Broadly Neutralizing Antibodies to Influenza Virus Are Encoded on the D3-9 Segment of the Ig Gene. PMID:30308159
Recombination is required for efficient HIV-1 replication and the maintenance of viral genome integrity. PMID:30307534
Genotypic and Mechanistic Characterization of Subtype-Specific HIV Adaptation to Host Cellular Immunity. PMID:30305354
Escovopsioides as a fungal antagonist of the fungus cultivated by leafcutter ants. PMID:30305028
New Insight into Parrots' Mitogenomes Indicates That Their Ancestor Contained a Duplicated Region. PMID:30304531
Monomeric Camelus dromedarius GSTM1 at low pH is structurally more thermostable than its native dimeric form. PMID:30303997
Pathogenicity of Serratia marcescens Strains in Honey Bees. PMID:30301854
Southernmost records of Escarpia spicata and Lamellibrachia barhami (Annelida: Siboglinidae) confirmed with DNA obtained from dried tubes collected from undiscovered reducing environments in northern Chile. PMID:30300424
Comparative analysis of selection mode reveals different evolutionary rate and expression pattern in Arachis duranensis and Arachis ipaënsis duplicated genes. PMID:30298428
Genetic dissection of interspecific differences in yeast thermotolerance. PMID:30297967
Leveraging single-cell genomics to expand the fungal tree of life. PMID:30297742
Sequencing HIV-neutralizing antibody exons and introns reveals detailed aspects of lineage maturation. PMID:30297708
VIRULIGN: fast codon-correct alignment and annotation of viral genomes. PMID:30295730
Tripal Developer Toolkit. PMID:30295719
New Report of Three Unrecorded Species in Trichoderma harzianum Species Complex in Korea. PMID:30294477
Three new species of Krogia (Ramalinaceae, lichenised Ascomycota) from the Paleotropics. PMID:30294209
The Bear Giant-Skipper genome suggests genetic adaptations to living inside yucca roots. PMID:30293092
Antigenic and sequence variability of the human respiratory syncytial virus F glycoprotein compared to related viruses in a comprehensive dataset. PMID:30292456
A draft genome of the striped catfish, Pangasianodon hypophthalmus, for comparative analysis of genes relevant to development and a resource for aquaculture improvement. PMID:30290758
Islands of linkage in an ocean of pervasive recombination reveals two-speed evolution of human cytomegalovirus genomes. PMID:30288299
High-throughput proteomic profiling of the fish liver following bacterial infection. PMID:30285610
Positive and balancing selection on SLC18A1 gene associated with psychiatric disorders and human-unique personality traits. PMID:30283697
Dramatic evolution of body length due to postembryonic changes in cell size in a newly discovered close relative of Caenorhabditis elegans. PMID:30283693
Horizontal gene cluster transfer increased hallucinogenic mushroom diversity. PMID:30283667
Mitogenome evolution in the last surviving woolly mammoth population reveals neutral and functional consequences of small population size. PMID:30283657
Convergent evolution of complex structures for ant-bacterial defensive symbiosis in fungus-farming ants. PMID:30282739
Fusion surface structure, function, and dynamics of gamete fusogen HAP2. PMID:30281023
Identification of an aquaculture poriferan "Pest with Potential" and its phylogenetic implications. PMID:30280018
Genetic conflicts with Plasmodium parasites and functional constraints shape the evolution of erythrocyte cytoskeletal proteins. PMID:30279439
High Throughput Identification of Antihypertensive Peptides from Fish Proteome Datasets. PMID:30279337
Molecular characterization of putative neuropeptide, amine, diffusible gas and small molecule transmitter biosynthetic enzymes in the eyestalk ganglia of the American lobster, Homarus americanus. PMID:30276482
Convergent evolution of the ladder-like ventral nerve cord in Annelida. PMID:30275868
Multilocus phylogeny reveals taxonomic misidentification of the Schizoporaparadoxa (KUC8140) representative genome. PMID:30275743
Morphological and phylogenetic characterisation of novel Cytospora species associated with mangroves. PMID:30275742
A discussion on the genus Fomitiporella (Hymenochaetaceae, Hymenochaetales) and first record of F.americana from southern South America. PMID:30275741
Genomic analysis of Sparus aurata reveals the evolutionary dynamics of sex-biased genes in a sequential hermaphrodite fish. PMID:30271999
Triplicate parallel life cycle divergence despite gene flow in periodical cicadas. PMID:30271912
Phylogenomic analysis demonstrates a pattern of rare and long-lasting concerted evolution in prokaryotes. PMID:30271899
Whole genome analysis of local Kenyan and global sequences unravels the epidemiological and molecular evolutionary dynamics of RSV genotype ON1 strains. PMID:30271623
Hydnophanerochaete and Odontoefibula, two new genera of phanerochaetoid fungi (Polyporales, Basidiomycota) from East Asia. PMID:30271259
New molecular sequences for two genera of marine planarians facilitate determination of their position in the phylogenetic tree, with new records for two species (Platyhelminthes, Tricladida, Maricola). PMID:30271231
Protein AMPylation by an Evolutionarily Conserved Pseudokinase. PMID:30270044
Emerging evolutionary paradigms in antibiotic discovery. PMID:30269177
The interplay between membrane lipids and phospholipase A family members in grapevine resistance against Plasmopara viticola. PMID:30266912
Tannerella forsythia Tfo belongs to Porphyromonas gingivalis HmuY-like family of proteins but differs in heme-binding properties. PMID:30266745
Diversity and phylogenetic relationships of European species of Crepidostomum Braun, 1900 (Trematoda: Allocreadiidae) based on rDNA, with special reference to Crepidostomum oschmarini Zhokhov & Pugacheva, 1998. PMID:30266086
A Single Tim Translocase in the Mitosomes of Giardia intestinalis Illustrates Convergence of Protein Import Machines in Anaerobic Eukaryotes. PMID:30265292
Phylogenetic Analysis of the vesicular fusion SNARE machinery revealing its functional divergence across Eukaryotes. PMID:30262973
Phylogenetic, comparative genomic and structural analyses of human Streptococcus agalactiae ST485 in China. PMID:30261834
Safety and antiviral activity of combination HIV-1 broadly neutralizing antibodies in viremic individuals. PMID:30258217
Novel Class of Viral Ankyrin Proteins Targeting the Host E3 Ubiquitin Ligase Cullin-2. PMID:30258003
Interspecific chloroplast genome sequence diversity and genomic resources in Diospyros. PMID:30257644
Bona fide choline monoxygenases evolved in Amaranthaceae plants from oxygenases of unknown function: Evidence from phylogenetics, homology modeling and docking studies. PMID:30256846
Advertisement calls and DNA sequences reveal a new species of Scinax (Anura: Hylidae) on the Pacific lowlands of Ecuador. PMID:30256795
A subset of chemosensory genes differs between two populations of a specialized leaf beetle after host plant shift. PMID:30250684
Host specificity of parasitoids (Encyrtidae) toward armored scale insects (Diaspididae): Untangling the effect of cryptic species on quantitative food webs. PMID:30250670
Molecular dynamics and structure function analysis show that substrate binding and specificity are major forces in the functional diversification of Eqolisins. PMID:30249179
TbUTP10, a protein involved in early stages of pre-18S rRNA processing in Trypanosoma brucei. PMID:30248370
Molecular Characterization of MbraOR16, a Candidate Sex Pheromone Receptor in Mamestra brassicae (Lepidoptera: Noctuidae). PMID:30247742
Identification and Localization of Peroxisomal Biogenesis Proteins Indicates the Presence of Peroxisomes in the Cryptophyte Guillardia theta and Other "Chromalveolates". PMID:30247558
Tick galactosyltransferases are involved in α-Gal synthesis and play a role during Anaplasma phagocytophilum infection and Ixodes scapularis tick vector development. PMID:30242261
Differential expression of the adult specifier E93 in the strepsipteran Xenos vesparum Rossi suggests a role in female neoteny. PMID:30242215
Repeated inversions within a pannier intron drive diversification of intraspecific colour patterns of ladybird beetles. PMID:30242156
Progressive multiple sequence alignment with indel evolution. PMID:30241460
Did aculeate silk evolve as an antifouling material? PMID:30240428
Chemoreceptor proteins in the Caribbean spiny lobster, Panulirus argus: Expression of Ionotropic Receptors, Gustatory Receptors, and TRP channels in two chemosensory organs and brain. PMID:30240423
Mitochondrial Genome Fragmentation Unites the Parasitic Lice of Eutherian Mammals. PMID:30239978
Evolutionary Genomics of Metchnikovella incurvata (Metchnikovellidae): An Early Branching Microsporidium. PMID:30239727
Fine mapping and candidate gene identification of the genic male-sterile gene ms3 in cabbage 51S. PMID:30238254
Evolutionary pathway for the 2017 emergence of a novel highly pathogenic avian influenza A(H7N9) virus among domestic poultry in Tennessee, United States. PMID:30236990
Molecular Evolution of GDP-D-Mannose Epimerase (GME), a Key Gene in Plant Ascorbic Acid Biosynthesis. PMID:30233629
A case of behavioural diversification in male floral function - the evolution of thigmonastic pollen presentation. PMID:30232353
A metagenomics roadmap to the uncultured genome diversity in hypersaline soda lake sediments. PMID:30231921
Microhabitat change drives diversification in pholcid spiders. PMID:30231864
Molecular diversity and biennial circulation of enterovirus D68: a systematic screening study in Lyon, France, 2010 to 2016. PMID:30229724
New mitochondrial primers for metabarcoding of insects, designed and evaluated using in silico methods. PMID:30226026
Complete genome sequence of a novel sea otterpox virus. PMID:30225673
Immediate-Early Promoter-Driven Transgenic Reporter System for Neuroethological Research in a Hemimetabolous Insect. PMID:30225346
Assessment of the bacterial community structure in shallow and deep sediments of the Perdido Fold Belt region in the Gulf of Mexico. PMID:30225176
Origin of exon skipping-rich transcriptomes in animals driven by evolution of gene architecture. PMID:30223879
EukRef: Phylogenetic curation of ribosomal RNA to enhance understanding of eukaryotic diversity and distribution. PMID:30222734
An Atypical Parvovirus Drives Chronic Tubulointerstitial Nephropathy and Kidney Fibrosis. PMID:30220458
WaspBase: a genomic resource for the interactions among parasitic wasps, insect hosts and plants. PMID:30219838
Genome-scale analysis of evolutionary rate and selection in a fast-expanding Spanish cluster of HIV-1 subtype F1. PMID:30219320
A Robust Methodology for Assessing Differential Homeolog Contributions to the Transcriptomes of Allopolyploids. PMID:30213855
A genome wide survey reveals multiple nematocyst-specific genes in Myxozoa. PMID:30208843
Phylogenetic evidence for independent origins of GDF1 and GDF3 genes in anurans and mammals. PMID:30206386
Metagenomic Analysis of Fish-Associated Ca. Parilichlamydiaceae Reveals Striking Metabolic Similarities to the Terrestrial Chlamydiaceae. PMID:30202970
A bioinformatics approach to identifying Wolbachia infections in arthropods. PMID:30202647
Characterisation of pathogen-specific regions and novel effector candidates in Fusarium oxysporum f. sp. cepae. PMID:30202022
Bovine Staphylococcus aureus Superantigens Stimulate the Entire T Cell Repertoire of Cattle. PMID:30201699
The linear mitochondrial genome of the quarantine chytrid Synchytrium endobioticum; insights into the evolution and recent history of an obligate biotrophic plant pathogen. PMID:30200892
Phylogenomic evidence for ancient recombination between plastid genomes of the Cupressus-Juniperus-Xanthocyparis complex (Cupressaceae). PMID:30200881
Assessing Metagenomic Signals Recovered from Lyuba, a 42,000-Year-Old Permafrost-Preserved Woolly Mammoth Calf. PMID:30200350
Evolution of pollination by frugivorous birds in Neotropical Myrtaceae. PMID:30186677
Phylogenetic approach to recover integration dates of latent HIV sequences within-host. PMID:30185556
Phylogenetic approaches to identifying fragments of the same gene, with application to the wheat genome. PMID:30184069
Introgression and gene family contraction drive the evolution of lifestyle and host shifts of hypocrealean fungi. PMID:30181924
The complete mitochondrial genome of Cymothoa indica has a highly rearranged gene order and clusters at the very base of the Isopoda clade. PMID:30180209
Three new Diplozoidae mitogenomes expose unusual compositional biases within the Monogenea class: implications for phylogenetic studies. PMID:30176801
Plastome characteristics of Cannabaceae. PMID:30175293
Distinct Genomic Features Characterize Two Clades of Corynebacterium diphtheriae: Proposal of Corynebacterium diphtheriae Subsp. diphtheriae Subsp. nov. and Corynebacterium diphtheriae Subsp. lausannense Subsp. nov. PMID:30174653
Strong succession in arbuscular mycorrhizal fungal communities. PMID:30171254
Dual Gene Repertoires for Larval and Adult Shells Reveal Molecules Essential for Molluscan Shell Formation. PMID:30169718
Hotspot mutations and ColE1 plasmids contribute to the fitness of Salmonella Heidelberg in poultry litter. PMID:30169497
Respiratory chain Complex I of unparalleled divergence in diplonemids. PMID:30166340
Evolution of dental tissue mineralization: an analysis of the jawed vertebrate SPARC and SPARC-L families. PMID:30165817
First reported chloroplast genome sequence of Punica granatum (cultivar Helow) from Jabal Al-Akhdar, Oman: phylogenetic comparative assortment with Lagerstroemia. PMID:30159822
Spatio-temporal evolution of Allium L. in the Qinghai-Tibet-Plateau region: Immigration and in situ radiation. PMID:30159508
Distribution of Holttumochloa (Poaceae: Bambusoideae) in China with description of a new species revealed by morphological and molecular evidence. PMID:30159503
Microbiome composition within a sympatric species complex of intertidal isopods (Jaera albifrons). PMID:30157257
Comparative Analyses of Chloroplast Genomes of Cucurbitaceae Species: Lights into Selective Pressures and Phylogenetic Relationships. PMID:30154353
Evolution of the U.S. Biological Select Agent Rathayibacter toxicus. PMID:30154261
Hidden diversity in forest soils: Characterization and comparison of terrestrial flatworm's communities in two national parks in Spain. PMID:30151158
Vertical canopy gradient shaping the stratification of leaf-chewer-parasitoid interactions in a temperate forest. PMID:30151150
Fungi Indirectly Affect Plant Root Architecture by Modulating Soil Volatile Organic Compounds. PMID:30150975
Repeated translocation of a gene cassette drives sex-chromosome turnover in strawberries. PMID:30148831
Molecular Detection of Eukaryotic Diets and Gut Mycobiomes in Two Marine Sediment-Dwelling Worms, Sipunculus nudus and Urechis unicinctus. PMID:30146540
Genomic and epidemiological monitoring of yellow fever virus transmission potential. PMID:30139911
Negative regulation of conserved RSL class I bHLH transcription factors evolved independently among land plants. PMID:30136925
Metagenomic assembly of new (sub)polar Cyanobacteria and their associated microbiome from non-axenic cultures. PMID:30136922
Structure of paused transcription complex Pol II-DSIF-NELF. PMID:30135580
Isolation and characterization of novel bat paramyxovirus B16-40 potentially belonging to the proposed genus Shaanvirus. PMID:30135435
A Post-segregational Killing Mechanism for Maintaining Plasmid PMF1 in Its Myxococcus fulvus Host. PMID:30131946
Fluidigm2PURC: Automated processing and haplotype inference for double-barcoded PCR amplicons. PMID:30131898
Genome-wide identification and characterization of non-specific lipid transfer proteins in cabbage. PMID:30128186
New species of Cystolepiota from China. PMID:30123628
A new species of Lecidea (Lecanorales, Ascomycota) from Pakistan. PMID:30123028
Entomopathogenic fungi in Portuguese vineyards soils: suggesting a 'Galleria-Tenebrio-bait method' as bait-insects Galleria and Tenebrio significantly underestimate the respective recoveries of Metarhizium (robertsii) and Beauveria (bassiana). PMID:30123027
Phylogeny and genetic diversity of the banana Fusarium wilt pathogen Fusarium oxysporum f. sp. cubense in the Indonesian centre of origin. PMID:30122796
Complete chloroplast genome sequence of Fagopyrum dibotrys: genome features, comparative analysis and phylogenetic relationships. PMID:30120274
Reclassification of Parapterulicium Corner (Pterulaceae, Agaricales), contributions to Lachnocladiaceae and Peniophoraceae (Russulales) and introduction of Baltazaria gen. nov. PMID:30116138
Epidemic history of hepatitis C virus genotypes and subtypes in Portugal. PMID:30116054
Picoeukaryotes of the Micromonas genus: sentinels of a warming ocean. PMID:30116039
Discovery and genome characterization of three new Jeilongviruses, a lineage of paramyxoviruses characterized by their unique membrane proteins. PMID:30115009
Polysaccharide utilization loci of North Sea Flavobacteriia as basis for using SusC/D-protein expression for predicting major phytoplankton glycans. PMID:30111868
Evolutionarily conserved partial gene duplication in the Triticeae tribe of grasses confers pathogen resistance. PMID:30111359
Ectomycorrhizae formed by three Japanese truffle species (Tuber japonicum, T. longispinosum, and T. himalayense) on indigenous oak and pine species. PMID:30109472
PHAB toxins: a unique family of predatory sea anemone toxins evolving via intra-gene concerted evolution defines a new peptide fold. PMID:30109357
Phylogeny of hydrothermal vent Iphionidae, with the description of a new species (Aphroditiformia, Annelida). PMID:30108430
Taxonomy of Aspergillus section Flavi and their production of aflatoxins, ochratoxins and other mycotoxins. PMID:30108412
Floral evolution by simplification in Monanthotaxis (Annonaceae) and hypotheses for pollination system shifts. PMID:30104579
Phylogenomic and Comparative Analyses of Complete Plastomes of Croomia and Stemona (Stemonaceae). PMID:30104517
Comparative genomics and evolution of trans-activating RNAs in Class 2 CRISPR-Cas systems. PMID:30103650
A novel multiplex PCR-electronic microarray assay for rapid and simultaneous detection of bovine respiratory and enteric pathogens. PMID:30102924
Evolutionary and genotypic analyses of global porcine epidemic diarrhea virus strains. PMID:30102851
A Freeloader? The Highly Eroded Yet Large Genome of the Serratia symbiotica Symbiont of Cinara strobi. PMID:30102395
Coalescent Analysis of Phylogenomic Data Confidently Resolves the Species Relationships in the Anopheles gambiae Species Complex. PMID:30102363
Draft genome assembly of the invasive cane toad, Rhinella marina. PMID:30101298
Bioinformatics applications on Apache Spark. PMID:30101283
F-CphI represents a new homing endonuclease family using the Endo VII catalytic motif. PMID:30100927
Bayesian Phylogeography and Pathogenic Characterization of Smallpox Based on HA, ATI, and CrmB Genes. PMID:30099520
The unusual flagellar-targeting mechanism and functions of the trypanosome ortholog of the ciliary GTPase Arl13b. PMID:30097558
Morphological and molecular characterization of Cystoisospora sp. from Asian small-clawed otters Aonyx cinereus. PMID:30094175
Phylogenetic analysis of the mitochondrial genomes in bees (Hymenoptera: Apoidea: Anthophila). PMID:30092091
Phylogenomics uncovers early hybridization and adaptive loci shaping the radiation of Lake Tanganyika cichlid fishes. PMID:30089797
Clostridium difficile exosporium cysteine-rich proteins are essential for the morphogenesis of the exosporium layer, spore resistance, and affect C. difficile pathogenesis. PMID:30089172
Quillworts from the Amazon: A multidisciplinary populational study on Isoetes serracarajensis and Isoetes cangae. PMID:30089144
Putative neuromycotoxicoses in an adult male following ingestion of moldy walnuts. PMID:30088215
Beached bachelors: An extensive study on the largest recorded sperm whale Physeter macrocephalus mortality event in the North Sea. PMID:30086178
Venomix: a simple bioinformatic pipeline for identifying and characterizing toxin gene candidates from transcriptomic data. PMID:30083468
Patterns in evolutionary origins of heme, chlorophyll a and isopentenyl diphosphate biosynthetic pathways suggest non-photosynthetic periods prior to plastid replacements in dinoflagellates. PMID:30083465
Loss or duplication of key regulatory genes coincides with environmental adaptation of the stomatal complex in Nymphaea colorata and Kalanchoe laxiflora. PMID:30083357
Degradation and remobilization of endogenous retroviruses by recombination during the earliest stages of a germ-line invasion. PMID:30082403
The genetic diversity of Borrelia afzelii is not maintained by the diversity of the rodent hosts. PMID:30081938
Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave. PMID:30081833
NBR1 is involved in selective pexophagy in filamentous ascomycetes and can be functionally replaced by a tagged version of its human homolog. PMID:30081713
A Novel Eukaryotic Denitrification Pathway in Foraminifera. PMID:30078568
Complete human mtDNA genome sequences from Vietnam and the phylogeography of Mainland Southeast Asia. PMID:30076323
Investigation of mitochondrial-derived plastome sequences in the Paspalum lineage (Panicoideae; Poaceae). PMID:30075756
Evolutionary dynamics of host specialization in wood-decay fungi. PMID:30075699
Accidental Father-to-Son HIV-1 Transmission During the Seroconversion Period. PMID:30073842
Relationship between latent and rebound viruses in a clinical trial of anti-HIV-1 antibody 3BNC117. PMID:30072495
Diversity and evolution of anuran trypanosomes: insights from the study of European species. PMID:30071897
A GWAS on Helicobacter pylori strains points to genetic variants associated with gastric cancer risk. PMID:30071832
A High-Quality, Long-Read De Novo Genome Assembly to Aid Conservation of Hawaii's Last Remaining Crow Species. PMID:30071683
Tangled history of a multigene family: The evolution of ISOPENTENYLTRANSFERASE genes. PMID:30070990
Loss of Fam60a, a Sin3a subunit, results in embryonic lethality and is associated with aberrant methylation at a subset of gene promoters. PMID:30070635
Phylogenetic and functional evidence suggests that deep-ocean ecosystems are highly sensitive to environmental change and direct human disturbance. PMID:30068675
Evolution and diversification of the plant gibberellin receptor GID1. PMID:30068603
cytb as a New Genetic Marker for Differentiation of Prototheca Species. PMID:30068534
The changing views on the evolutionary relationships of extant Salamandridae (Amphibia: Urodela). PMID:30067741
First chloroplast genomics study of Phoenix dactylifera (var. Naghal and Khanezi): A comparative analysis. PMID:30063732
Genomic surveillance of Neisseria gonorrhoeae to investigate the distribution and evolution of antimicrobial-resistance determinants and lineages. PMID:30063202
Phylogenetic patterns recover known HIV epidemiological relationships and reveal common transmission of multiple variants. PMID:30061758
Complex Evolutionary History of Translation Elongation Factor 2 and Diphthamide Biosynthesis in Archaea and Parabasalids. PMID:30060184
Conotoxin Diversity in Chelyconus ermineus (Born, 1778) and the Convergent Origin of Piscivory in the Atlantic and Indo-Pacific Cones. PMID:30060147
Metagenomic sequencing suggests a diversity of RNA interference-like responses to viruses across multicellular eukaryotes. PMID:30059538
New species in Dictyosporium, new combinations in Dictyocheirospora and an updated backbone tree for Dictyosporiaceae. PMID:30057482
Description of Triatoma mopan sp. n. from a cave in Belize (Hemiptera, Reduviidae, Triatominae). PMID:30057472
Systematics of Neotropical microteiid lizards (Gymnophthalmidae, Cercosaurinae), with the description of a new genus and species from the Andean montane forests. PMID:30057466
No detectable effect of Wolbachia wMel on the prevalence and abundance of the RNA virome of Drosophila melanogaster. PMID:30051873
Molecular detection of hemogregarines and haemosporidians in Brazilian free-living testudines. PMID:30050752
Multiple Biogenic Amine Receptor Types Modulate Spider, Cupiennius salei, Mechanosensory Neurons. PMID:30050453
Genomic profiling of four cultivated Candidatus Nitrotoga spp. predicts broad metabolic potential and environmental distribution. PMID:30050164
TERribly Difficult: Searching for Telomerase RNAs in Saccharomycetes. PMID:30049970
Time-calibrated phylogenomics of the porcine epidemic diarrhea virus: genome-wide insights into the spatio-temporal dynamics. PMID:30047110
Genetic Evidence Supports Sporadic and Independent Introductions of Subtype H5 Low-Pathogenic Avian Influenza A Viruses from Wild Birds to Domestic Poultry in North America. PMID:30045988
Novel Divergent Polar Bear-Associated Mastadenovirus Recovered from a Deceased Juvenile Polar Bear. PMID:30045965
Consensus assessment of the contamination level of publicly available cyanobacterial genomes. PMID:30044797
Characterization of circulating RSV strains among subjects in the OUTSMART-RSV surveillance program during the 2016-17 winter viral season in the United States. PMID:30040837
Climate and host-plant associations shaped the evolution of ceutorhynch weevils throughout the Cenozoic. PMID:30040114
High Throughput Sequencing and Network Analysis Disentangle the Microbial Communities of Ticks and Hosts Within and Between Ecosystems. PMID:30038903
Phylogenomic relationship and evolutionary insights of sweet potato viruses from the western highlands of Kenya. PMID:30038869
Double-digest RADseq loci using standard Illumina indexes improve deep and shallow phylogenetic resolution of Lophodermium, a widespread fungal endophyte of pine needles. PMID:30038763
Comparative Genomics and Phylogenetic Analysis Revealed the Chloroplast Genome Variation and Interspecific Relationships of Corylus (Betulaceae) Species. PMID:30038632
Lateral Gene Transfer Between Protozoa-Related Giant Viruses of Family Mimiviridae and Chlamydiae. PMID:30038484
High-Throughput Sequencing Reveals Further Diversity of Little Cherry Virus 1 with Implications for Diagnostics. PMID:30037079
Pan-genome Analysis of Ancient and Modern Salmonella enterica Demonstrates Genomic Stability of the Invasive Para C Lineage for Millennia. PMID:30033331
Widespread ancient whole-genome duplications in Malpighiales coincide with Eocene global climatic upheaval. PMID:30030969
Cytochrome P450 and O-methyltransferase catalyze the final steps in the biosynthesis of the anti-addictive alkaloid ibogaine from Tabernanthe iboga. PMID:30030374
Expression of NK cluster genes in the onychophoran Euperipatoides rowelli: implications for the evolution of NK family genes in nephrozoans. PMID:30026904
Characterization of the binding mode of JNK-interacting protein 1 (JIP1) to kinesin-light chain 1 (KLC1). PMID:30026235
Population genomics shows no distinction between pathogenic Candida krusei and environmental Pichia kudriavzevii: One species, four names. PMID:30024981
Evolution and expression analyses of the MADS-box gene family in Brassica napus. PMID:30024950
Cleavage of Peptides from Amphibian Skin Revealed by Combining Analysis of Gland Secretion and in Situ MALDI Imaging Mass Spectrometry. PMID:30023919
A Novel Squirrel Respirovirus with Putative Zoonotic Potential. PMID:30021939
Enigmatic Diphyllatea eukaryotes: culturing and targeted PacBio RS amplicon sequencing reveals a higher order taxonomic diversity and global distribution. PMID:30021531
Molecular Deconvolution Platform to Establish Disease Mechanisms by Surveying GPCR Signaling. PMID:30021154
IMA Genome-F 9: Draft genome sequence of Annulohypoxylon stygium, Aspergillus mulundensis, Berkeleyomyces basicola (syn. Thielaviopsis basicola), Ceratocystis smalleyi, two Cercospora beticola strains, Coleophoma cylindrospora, Fusarium fracticaudum, Phialophora cf. hyalina, and Morchella septimelata. PMID:30018880
Ustilago species causing leaf-stripe smut revisited. PMID:30018872
Combined Metabarcoding and Multi-locus approach for Genetic characterization of Colletotrichum species associated with common walnut (Juglans regia) anthracnose in France. PMID:30018385
Deciphering the biology of Cryptophyllachora eurasiatica gen. et sp. nov., an often cryptic pathogen of an allergenic weed, Ambrosia artemisiifolia. PMID:30018297
Characterization of the Chloroplast Genome Sequence of Acer miaotaiense: Comparative and Phylogenetic Analyses. PMID:30018192
Evolutionary dynamics of mycorrhizal symbiosis in land plant diversification. PMID:30013185
Genetic characterization and pathogenic potential of H10 avian influenza viruses isolated from live poultry markets in Bangladesh. PMID:30013138
Effect of the Synthetic Bile Salt Analog CamSA on the Hamster Model of Clostridium difficile Infection. PMID:30012758
Measles virus genotype D4 strains with non-standard length M-F non-coding region circulated during the major outbreaks of 2011-2012 in Spain. PMID:30011283
Genome-Wide Sequence Analysis of Kaposi Sarcoma-Associated Herpesvirus Shows Diversification Driven by Recombination. PMID:30010810
Highly diverged novel subunit composition of apicomplexan F-type ATP synthase identified from Toxoplasma gondii. PMID:30005062
Environmental determinants of pyoverdine production, exploitation and competition in natural Pseudomonas communities. PMID:30003663
AnnotationBustR: an R package to extract subsequences from GenBank annotations. PMID:30002984
The origin and adaptive evolution of domesticated populations of yeast from Far East Asia. PMID:30002370
Molecular Characterization of Divergent Closterovirus Isolates Infecting Ribes Species. PMID:30002359
First Report of Eight Milkcap Species Belonging to Lactarius and Lactifluus in Korea. PMID:29998028
Genetic and Phylogenetic Characteristics of Pasteurella multocida Isolates From Different Host Species. PMID:29997608
Biodiversity, Evolution and Ecological Specialization of Baculoviruses: A Treasure Trove for Future Applied Research. PMID:29997344
De novo assembly of a transcriptome for the cricket Gryllus bimaculatus prothoracic ganglion: An invertebrate model for investigating adult central nervous system compensatory plasticity. PMID:29995882
CRISPR-Cas systems in multicellular cyanobacteria. PMID:29995583
Transcriptome-Guided Identification of Carbohydrate Active Enzymes (CAZy) from the Christmas Island Red Crab, Gecarcoidea natalis and a Vote for the Inclusion of Transcriptome-Derived Crustacean CAZys in Comparative Studies. PMID:29995174
Genetic diversity of Pneumocystis jirovecii from a cluster of cases of pneumonia in renal transplant patients: Cross-sectional study. PMID:29992629
16S rRNA sequencing reveals likely beneficial core microbes within faecal samples of the EU protected slug Geomalacus maculosus. PMID:29991804
Genomes of two archaeal endosymbionts show convergent adaptations to an intracellular lifestyle. PMID:29991760
Characterization of the First "Candidatus Nitrotoga" Isolate Reveals Metabolic Versatility and Separate Evolution of Widespread Nitrite-Oxidizing Bacteria. PMID:29991589
Geometric morphometric on a new species of Trichodinidae. A tool to discriminate trichodinid species combined with traditional morphology and molecular analysis. PMID:29988856
Sequence capture phylogenomics of eyeless Cicurina spiders from Texas caves, with emphasis on US federally-endangered species from Bexar County (Araneae, Hahniidae). PMID:29988790
Subcutaneous merocercoids of Clistobothrium sp. in two Cape fur seals (Arctocephalus pusillus pusillus). PMID:29988787
Morphological re-description and molecular identification of Tabanidae (Diptera) in East Africa. PMID:29988760
Sensilla Morphology and Complex Expression Pattern of Odorant Binding Proteins in the Vetch Aphid Megoura viciae (Hemiptera: Aphididae). PMID:29988577
Morphological plasticity in Myxobolus Bütschli, 1882: a taxonomic dilemma case and renaming of a parasite species of the common carp. PMID:29986743
Whole genome sequencing and identification of Bacillus endophyticus and B. anthracis isolated from anthrax outbreaks in South Africa. PMID:29986655
High Viral Diversity and Mixed Infections in Cerebral Spinal Fluid From Cases of Varicella Zoster Virus Encephalitis. PMID:29986093
A Revised Spiralian Homeobox Gene Classification Incorporating New Polychaete Transcriptomes Reveals a Diverse TALE Class and a Divergent Hox Gene. PMID:29986009
Origin and parental genome characterization of the allotetraploid Stylosanthes scabra Vogel (Papilionoideae, Leguminosae), an important legume pasture crop. PMID:29982475
Patterns of Nucleotide Deletion and Insertion Inferred from Bacterial Pseudogenes. PMID:29982456
Whole Genome Sequencing of the Pirarucu (Arapaima gigas) Supports Independent Emergence of Major Teleost Clades. PMID:29982381
Three new Leptographium spp. (Ophiostomatales) infecting hardwood trees in Norway and Poland. PMID:29980901
A Colicin M-Type Bacteriocin from Pseudomonas aeruginosa Targeting the HxuC Heme Receptor Requires a Novel Immunity Partner. PMID:29980560
Molecular marker sequences of cattle Cooperia species identify Cooperia spatulata as a morphotype of Cooperia punctata. PMID:29979783
The genome assembly of the fungal pathogen Pyrenochaeta lycopersici from Single-Molecule Real-Time sequencing sheds new light on its biological complexity. PMID:29979772
DNA extraction from amoebal isolates and genotype determination of Acanthamoeba from tap water in Latvia. PMID:29978422
The evolution of anti-bat sensory illusions in moths. PMID:29978042
Comparative Chloroplast Genome Analyses of Species in Gentiana section Cruciata (Gentianaceae) and the Development of Authentication Markers. PMID:29976857
The evolutionary history of dogs in the Americas. PMID:29976825
Diversity, evolution, and function of myriapod hemocyanins. PMID:29976142
Range-constrained co-occurrence simulation reveals little niche partitioning among rock-dwelling Montenegrina land snails (Gastropoda: Clausiliidae). PMID:29973747
Systematic estimation of insertion dates of endogenous bornavirus-like elements in vesper bats. PMID:29973433
The first next-generation sequencing approach to the mitochondrial phylogeny of African monogenean parasites (Platyhelminthes: Gyrodactylidae and Dactylogyridae). PMID:29973152
Novel anelloviruses identified in buccal swabs of Antarctic fur seals. PMID:29971737
Stable isotope informed genome-resolved metagenomics reveals that Saccharibacteria utilize microbially-processed plant-derived carbon. PMID:29970182
A constrained SSU-rRNA phylogeny reveals the unsequenced diversity of photosynthetic Cyanobacteria (Oxyphotobacteria). PMID:29970154
A reference cytochrome c oxidase subunit I database curated for hierarchical classification of arthropod metabarcoding data. PMID:29967752
Adaptation and conservation insights from the koala genome. PMID:29967444
First Report of Two Colletotrichum Species Associated with Bitter Rot on Apple Fruit in Korea - C. fructicola and C. siamense. PMID:29963317
New insights into the taxonomy of tribe Euclidieae (Brassicaceae), evidence from nrITS sequence data. PMID:29962892
Hypothesis on monochromatic vision in scorpionflies questioned by new transcriptomic data. PMID:29959337
Xapuri virus, a novel mammarenavirus: natural reassortment and increased diversity between New World viruses. PMID:29959319
Transcriptional and Translational Landscape of Equine Torovirus. PMID:29950409
Whole-Genome Comparison Reveals Divergent IR Borders and Mutation Hotspots in Chloroplast Genomes of Herbaceous Bamboos (Bambusoideae: Olyreae). PMID:29949900
New 1,3-benzodioxin-4-ones from Synnemapestaloides ericacearum sp. nov., a biosynthetic link to remarkable compounds within the Xylariales. PMID:29949590
Evolutionarily conserved function of the sacred lotus (Nelumbo nucifera Gaertn.) CER2-LIKE family in very-long-chain fatty acid elongation. PMID:29948126
Stepwise participation of HGF/MET signaling in the development of migratory muscle precursors during vertebrate evolution. PMID:29946484
Kupeantha (Coffeeae, Rubiaceae), a new genus from Cameroon and Equatorial Guinea. PMID:29944676
Experimental Infection of Rattus norvegicus by the Group II Intermediate Pathogen, Leptospira licerasiae. PMID:29943708
The substitution rate of HIV-1 subtypes: a genomic approach. PMID:29942652
Putting the Mess in Order: Aspergillus welwitschiae (and Not A. niger) Is the Etiological Agent of Sisal Bole Rot Disease in Brazil. PMID:29942289
Systematics of South American snail-eating snakes (Serpentes, Dipsadini), with the description of five new species from Ecuador and Peru. PMID:29942172
A novel adenovirus isolated from the Egyptian fruit bat in South Africa is closely related to recent isolates from China. PMID:29942032
Improved phylogenetic resolution within Siphonophora (Cnidaria) with implications for trait evolution. PMID:29940256
Bioinformatic Workflows for Generating Complete Plastid Genome Sequences-An Example from Cabomba (Cabombaceae) in the Context of the Phylogenomic Analysis of the Water-Lily Clade. PMID:29933597
Comparative Analysis of the Chloroplast Genomes of the Chinese Endemic Genus Urophysa and Their Contribution to Chloroplast Phylogeny and Adaptive Evolution. PMID:29932433
PASTA for proteins. PMID:29931282
Assessing the Likelihood of Gene Flow From Sugarcane (Saccharum Hybrids) to Wild Relatives in South Africa. PMID:29930938
Genomic analysis of a Raoultella ornithinolytica strain causing prosthetic joint infection in an immunocompetent patient. PMID:29930334
SRSF3 maintains transcriptome integrity in oocytes by regulation of alternative splicing and transposable elements. PMID:29928511
Pax3/7 duplicated and diverged independently in amphioxus, the basal chordate lineage. PMID:29925900
Phylogenomics resolves the deep phylogeny of seed plants and indicates partial convergent or homoplastic evolution between Gnetales and angiosperms. PMID:29925623
1-Aminocyclopropane-1-carboxylate deaminase producers associated to maize and other Poaceae species. PMID:29925415
Diversity of root-knot nematodes of the genus Meloidogyne Göeldi, 1892 (Nematoda: Meloidogynidae) associated with olive plants and environmental cues regarding their distribution in southern Spain. PMID:29924813
Parasitic infections and resource economy of Danish Iron Age settlement through ancient DNA sequencing. PMID:29924800
Recurrent Amplification of the Heterochromatin Protein 1 (HP1) Gene Family across Diptera. PMID:29924345
Relative Evolutionary Rates in Proteins Are Largely Insensitive to the Substitution Model. PMID:29924340
Phylogenomic Evidence Overturns Current Conceptions of Social Evolution in Wasps (Vespidae). PMID:29924339
Secondary Plastids of Euglenids and Chlorarachniophytes Function with a Mix of Genes of Red and Green Algal Ancestry. PMID:29924337
Horizontally transferred genes in the ctenophore Mnemiopsis leidyi. PMID:29922518
The use of chloroplast genome sequences to solve phylogenetic incongruences in Polystachya Hook (Orchidaceae Juss). PMID:29922511
Anchored phylogenomics illuminates the skipper butterfly tree of life. PMID:29921227
Annotation and profiling of barley GLYCOGEN SYNTHASE3/Shaggy-like genes indicated shift in organ-preferential expression. PMID:29920545
Fungi from Admiralty Bay (King George Island, Antarctica) Soils and Marine Sediments. PMID:29916010
Dynamic kinetochore size regulation promotes microtubule capture and chromosome biorientation in mitosis. PMID:29915359
Dynamic evolution and phylogenomic analysis of the chloroplast genome in Schisandraceae. PMID:29915292
Genome Rearrangement Shapes Prochlorococcus Ecological Adaptation. PMID:29915114
White-nose syndrome detected in bats over an extensive area of Russia. PMID:29914485
Phylogenetic and genomic analyses of the ribosomal oxygenases Riox1 (No66) and Riox2 (Mina53) provide new insights into their evolution. PMID:29914368
Single-strand DNA processing: phylogenomics and sequence diversity of a superfamily of potential prokaryotic HuH endonucleases. PMID:29914351
Metaxa2 Database Builder: enabling taxonomic identification from metagenomic or metabarcoding data using any genetic marker. PMID:29912385
Mutational analysis of the pro-peptide of a marine intracellular subtilisin protease supports its role in inhibition. PMID:29907987
Host Range and Genetic Plasticity Explain the Coexistence of Integrative and Extrachromosomal Mobile Genetic Elements. PMID:29905872
Complex history of dog (Canis familiaris) origins and translocations in the Pacific revealed by ancient mitogenomes. PMID:29904060
Characterization and phylogenetic analysis of the complete mitochondrial genome of the medicinal fungus Laetiporus sulphureus. PMID:29904057
Endogenous retroviruses of non-avian/mammalian vertebrates illuminate diversity and deep history of retroviruses. PMID:29902269
Archaeal and bacterial diversity and community composition from 18 phylogenetically divergent sponge species in Vietnam. PMID:29900079
Natural infection of Neotropical bats with hantavirus in Brazil. PMID:29899544
DNA barcoding and a precise morphological comparison revealed a cryptic species in the Nippolachnus piri complex (Hemiptera: Aphididae: Lachninae). PMID:29899412
Europe-wide reassessment of Dictyocoela (Microsporidia) infecting native and invasive amphipods (Crustacea): molecular versus ultrastructural traits. PMID:29895884
Toll-Like Receptor Evolution in Birds: Gene Duplication, Pseudogenization, and Diversifying Selection. PMID:29893911
iMusta4SLC: Database for the structural property and variations of solute carrier transporters. PMID:29892515
A new predator connecting the abyssal with the hadal in the Kuril-Kamchatka Trench, NW Pacific. PMID:29892501
The polyphyly of Plasmodium: comprehensive phylogenetic analyses of the malaria parasites (order Haemosporida) reveal widespread taxonomic conflict. PMID:29892372
New Fusarium species from the Kruger National Park, South Africa. PMID:29892206
Insights into the Genome Sequence of Chromobacterium amazonense Isolated from a Tropical Freshwater Lake. PMID:29888247
Horizontal Gene Transfer From Bacteria and Plants to the Arbuscular Mycorrhizal Fungus Rhizophagus irregularis. PMID:29887874
Marteilia refringens and Marteilia pararefringens sp. nov. are distinct parasites of bivalves and have different European distributions. PMID:29886855
Mutations in blind cavefish target the light-regulated circadian clock gene, period 2. PMID:29884790
Comprehensive evolutionary analysis of the Anthroherpon radiation (Coleoptera, Leiodidae, Leptodirini). PMID:29883486
Characterization of the Complete Chloroplast Genomes of Buddleja colvilei and B. sessilifolia: Implications for the Taxonomy of Buddleja L. PMID:29882896
Locus-aware decomposition of gene trees with respect to polytomous species trees. PMID:29881445
A gene transfer event suggests a long-term partnership between eustigmatophyte algae and a novel lineage of endosymbiotic bacteria. PMID:29880910
Phylogenetic conservatism of thermal traits explains dispersal limitation and genomic differentiation of Streptomyces sister-taxa. PMID:29880909
Venom allergen-like protein 28 in Clonorchis sinensis: four epitopes on its surface and the potential role of Cys124 for its conformational stability. PMID:29876859
Molecular and morphological data to facilitate future research on freshwater mussels (Bivalvia: Unionidae: Anodontinae). PMID:29876378
phylotaR: An Automated Pipeline for Retrieving Orthologous DNA Sequences from GenBank in R. PMID:29874797
Use of Whole-Genome Sequencing in the Investigation of a Nosocomial Influenza Virus Outbreak. PMID:29873767
Phylogeography and Ecological Niche Modeling Reveal Reduced Genetic Diversity and Colonization Patterns of Skunk Cabbage (Symplocarpus foetidus; Araceae) From Glacial Refugia in Eastern North America. PMID:29872442
Translating Niphargus barcodes from Switzerland into taxonomy with a description of two new species (Amphipoda, Niphargidae). PMID:29872366
A stable phylogenomic classification of Travunioidea (Arachnida, Opiliones, Laniatores) based on sequence capture of ultraconserved elements. PMID:29872361
Comparing Sanger sequencing and high-throughput metabarcoding for inferring photobiont diversity in lichens. PMID:29872090
Sorbitol Modulates Resistance to Alternaria alternata by Regulating the Expression of an NLR Resistance Gene in Apple. PMID:29871985
Beyond the Limits: tRNA Array Units in Mycobacterium Genomes. PMID:29867913
A Novel Strategy for Detecting Recent Horizontal Gene Transfer and Its Application to Rhizobium Strains. PMID:29867876
Long read assemblies of geographically dispersed Plasmodium falciparum isolates reveal highly structured subtelomeres. PMID:29862326
Two novel species of Neoaquastroma (Parabambusicolaceae, Pleosporales) with their phoma-like asexual morphs. PMID:29861654
Parallel and Gradual Genome Erosion in the Blattabacterium Endosymbionts of Mastotermes darwiniensis and Cryptocercus Wood Roaches. PMID:29860278
Root-associated bacteria influencing mycelial growth of Tricholoma matsutake (pine mushroom). PMID:29858828
A lectin of a non-invasive apple snail as an egg defense against predation alters the rat gut morphophysiology. PMID:29856808
Clinostomum poteae n. sp. (Digenea: Clinostomidae), in the trachea of a double-crested cormorant Phalacrocorax auritus Lesson, 1831 and molecular data linking the life-cycle stages of Clinostomum album Rosser, Alberson, Woodyard, Cunningham, Pote & Griffin, 2017 in Mississippi, USA. PMID:29855982
Multiple and Independent Phases of Transposable Element Amplification in the Genomes of Piciformes (Woodpeckers and Allies). PMID:29850797
RIFRAF: a frame-resolving consensus algorithm. PMID:29850783
One thousand DNA barcodes of piranhas and pacus reveal geographic structure and unrecognised diversity in the Amazon. PMID:29849152
Antifungal Activities of Volatile Secondary Metabolites of Four Diaporthe Strains Isolated from Catharanthus roseus. PMID:29848985
Gene family innovation, conservation and loss on the animal stem lineage. PMID:29848444
Comparative mitogenomics supports synonymy of the genera Ligula and Digramma (Cestoda: Diphyllobothriidae). PMID:29848351
Mind the gap! The mitochondrial control region and its power as a phylogenetic marker in echinoids. PMID:29848319
Cold adaptation and replicable microbial community development during long-term low-temperature anaerobic digestion treatment of synthetic sewage. PMID:29846574
The complete chloroplast genome of Colobanthus apetalus (Labill.) Druce: genome organization and comparison with related species. PMID:29844954
Molecular Evolution and Functional Divergence of the IgLON Family. PMID:29844654
Probiotic supplementation and associated infant gut microbiome and health: a cautionary retrospective clinical comparison. PMID:29844409
Fungal Isocyanide Synthases and Xanthocillin Biosynthesis in Aspergillus fumigatus. PMID:29844112
Genetic diversity of bat orthohepadnaviruses in China and a proposed new nomenclature. PMID:29842981
Improving cytidine and adenine base editors by expression optimization and ancestral reconstruction. PMID:29813047
Taxon Richness of "Megaviridae" Exceeds those of Bacteria and Archaea in the Ocean. PMID:29806626
Isolation and Identification of an Anthracimycin Analogue from Nocardiopsis kunsanensis, a Halophile from a Saltern, by Genomic Mining Strategy. PMID:29805716
Genomic Epidemiology Reconstructs the Introduction and Spread of Zika Virus in Central America and Mexico. PMID:29805095
First record of two ectoparasitic ciliates of the genus Trichodina (Ciliophora: Trichodinidae) parasitizing gills of an invasive freshwater fish, Micropercops swinhonis, in Tibet. PMID:29804193
Network-guided genomic and metagenomic analysis of the faecal microbiota of the critically endangered kakapo. PMID:29802288
Inpactor, Integrated and Parallel Analyzer and Classifier of LTR Retrotransposons and Its Application for Pineapple LTR Retrotransposons Diversity and Dynamics. PMID:29799487
HBV molecular epidemiology and clinical condition of immigrants living in Italy. PMID:29796738
Virus survey in populations of two subspecies of bent-winged bats (Miniopterus orianae bassanii and oceanensis) in south-eastern Australia reveals a high prevalence of diverse herpesviruses. PMID:29795610
Investigation of the thermophilic mechanism in the genus Porphyrobacter by comparative genomic analysis. PMID:29792177
Species identification and connectivity of marine amphipods in Canada's three oceans. PMID:29791459
Genome-based identification and analysis of ionotropic receptors in Spodoptera litura. PMID:29789962
Signatures of host specialization and a recent transposable element burst in the dynamic one-speed genome of the fungal barley powdery mildew pathogen. PMID:29788921
Variation in human chromosome 21 ribosomal RNA genes characterized by TAR cloning and long-read sequencing. PMID:29788454
Biological Processes Modulating Longevity across Primates: A Phylogenetic Genome-Phenome Analysis. PMID:29788292
Evolution of Gustatory Receptor Gene Family Provides Insights into Adaptation to Diverse Host Plants in Nymphalid Butterflies. PMID:29788112
Comparative analyses of the mitochondrial genome of the sheep ked Melophagus ovinus (Diptera: Hippoboscidae) from different geographical origins in China. PMID:29785619
Biological species in the viral world. PMID:29784828
Systematic prediction of genes functionally linked to CRISPR-Cas systems by gene neighborhood analysis. PMID:29784811
Transcriptomic Analysis of Pseudoscorpion Venom Reveals a Unique Cocktail Dominated by Enzymes and Protease Inhibitors. PMID:29783636
Salmonella enterica Prophage Sequence Profiles Reflect Genome Diversity and Can Be Used for High Discrimination Subtyping. PMID:29780368
The first isolate of Candida auris in China: clinical and biological aspects. PMID:29777096
Comparative genomics of the miniature wasp and pest control agent Trichogramma pretiosum. PMID:29776407
Phylogenomic analysis of Apoidea sheds new light on the sister group of bees. PMID:29776336
Evaluation of phylogenetic reconstruction methods using bacterial whole genomes: a simulation based study. PMID:29774245
Multiple origins of green blood in New Guinea lizards. PMID:29774232
A Novel Hepadnavirus Identified in an Immunocompromised Domestic Cat in Australia. PMID:29772771
Molecular evidence of hybridization in sympatric populations of the Enantia jethys complex (Lepidoptera: Pieridae). PMID:29771959
Multiple Sequence Alignment Averaging Improves Phylogeny Reconstruction. PMID:29771363
Avian Influenza Viruses in Wild Birds: Virus Evolution in a Multihost Ecosystem. PMID:29769347
Cotesia congregata Bracovirus Circles Encoding PTP and Ankyrin Genes Integrate into the DNA of Parasitized Manduca sexta Hemocytes. PMID:29769342
Phylogenetic relationships, stage-specific expression and localisation of a unique family of inactive cysteine proteases in Sarcoptes scabiei. PMID:29769145
Sequencing of complete mitochondrial genomes confirms synonymization of Hyalomma asiaticum asiaticum and kozlovi, and advances phylogenetic hypotheses for the Ixodidae. PMID:29768482
An annotated list and molecular data on larvae of gryporhynchid tapeworms (Cestoda: Cyclophyllidea) from freshwater fishes in Africa. PMID:29766407
Predictable Phenotypes of Antibiotic Resistance Mutations. PMID:29764951
Towards a comprehensive picture of C-to-U RNA editing sites in angiosperm mitochondria. PMID:29761268
Evaluation of Primers Targeting the Diazotroph Functional Gene and Development of NifMAP - A Bioinformatics Pipeline for Analyzing nifH Amplicon Data. PMID:29760683
Marsarchaeota are an aerobic archaeal lineage abundant in geothermal iron oxide microbial mats. PMID:29760463
Genome Sequences of Akhmeta Virus, an Early Divergent Old World Orthopoxvirus. PMID:29757202
Complete Mitochondrial Genomes of Baikal Oilfishes (Perciformes: Cottoidei), Earth's Deepest-Swimming Freshwater Fishes. PMID:29756047
Molecular Identification of Shark Meat From Local Markets in Southern Brazil Based on DNA Barcoding: Evidence for Mislabeling and Trade of Endangered Species. PMID:29755504
A Comparison of Selective Pressures in Plant X-Linked and Autosomal Genes. PMID:29751495
Recognition of the genus Thaumatophyllum Schott - formerly Philodendron subg. Meconostigma (Araceae) - based on molecular and morphological evidence. PMID:29750071
Morphological and molecular analyses of Bipteria lusitanica n. sp. in wild white seabream, Diplodus sargus (Linnaeus, 1758) in Portugal. PMID:29748714
Whole genome and transcriptome analysis reveal adaptive strategies and pathogenesis of Calonectria pseudoreteaudii to Eucalyptus. PMID:29747580
Genome sequencing of Rhinorhipus Lawrence exposes an early branch of the Coleoptera. PMID:29743928
Detection of Chlamydiaceae and Chlamydia-like organisms on the ocular surface of children and adults from a trachoma-endemic region. PMID:29743637
Unexpected infection outcomes of China-origin H7N9 low pathogenicity avian influenza virus in turkeys. PMID:29743603
Histidine168 is crucial for ΔpH-dependent gating of the human voltage-gated proton channel, hHV1. PMID:29743300
InterEvDock2: an expanded server for protein docking using evolutionary and biological information from homology models and multimeric inputs. PMID:29741647
Systematic studies of all PIH proteins in zebrafish reveal their distinct roles in axonemal dynein assembly. PMID:29741156
Improving the Yield and Nutritional Quality of Forage Crops. PMID:29740468
Re-visiting the evolution, dispersal and epidemiology of Zika virus in Asia. PMID:29739925
Mobilization of retrotransposons as a cause of chromosomal diversification and rapid speciation: the case for the Antarctic teleost genus Trematomus. PMID:29739320
Plastid genome analysis of three Nemaliophycidae red algal species suggests environmental adaptation for iron limited habitats. PMID:29738547
MIKCC-type MADS-box genes in Rosa chinensis: the remarkable expansion of ABCDE model genes and their roles in floral organogenesis. PMID:29736250
Transposition Behavior Revealed by High-Resolution Description of Pseudomonas Aeruginosa Saltovirus Integration Sites. PMID:29735891
Longevity and transposon defense, the case of termite reproductives. PMID:29735660
Identification of Novel Acinetobacter baumannii Type VI Secretion System Antibacterial Effector and Immunity Pairs. PMID:29735524
Microbial Diversity and Toxin Risk in Tropical Freshwater Reservoirs of Cape Verde. PMID:29734762
Targeting legume loci: A comparison of three methods for target enrichment bait design in Leguminosae phylogenomics. PMID:29732266
Comparison of taxon-specific versus general locus sets for targeted sequence capture in plant phylogenomics. PMID:29732262
Extensive gene rearrangements in the mitochondrial genomes of two egg parasitoids, Trichogramma japonicum and Trichogramma ostriniae (Hymenoptera: Chalcidoidea: Trichogrammatidae). PMID:29728615
Insight into Energy Conservation via Alternative Carbon Monoxide Metabolism in Carboxydothermus pertinax Revealed by Comparative Genome Analysis. PMID:29728389
Development of Chloroplast Genomic Resources in Chinese Yam (Dioscorea polystachya). PMID:29725599
Identification and Characterization of a Novel Hepta-Segmented dsRNA Virus From the Phytopathogenic Fungus Colletotrichum fructicola. PMID:29725323
Macroecology and macroevolution of the latitudinal diversity gradient in ants. PMID:29725049
Genome-wide expert annotation of the epigenetic machinery of the plant-parasitic nematodes Meloidogyne spp., with a focus on the asexually reproducing species. PMID:29724186
Competition matters: Determining the drivers of land snail community assembly among limestone karst areas in northern Vietnam. PMID:29721286
The Zinc-Finger Thylakoid-Membrane Protein FIP Is Involved With Abiotic Stress Response in Arabidopsis thaliana. PMID:29720990
A new phylogeny-based tribal classification of subfamily Detarioideae, an early branching clade of florally diverse tropical arborescent legumes. PMID:29720687
Cryptic species in a well-known habitat: applying taxonomics to the amphipod genus Epimeria (Crustacea, Peracarida). PMID:29720606
Seminal Simian Immunodeficiency Virus in Chronically Infected Cynomolgus Macaques Is Dominated by Virus Originating from Multiple Genital Organs. PMID:29720516
Multiplicity and molecular epidemiology of Plasmodium vivax and Plasmodium falciparum infections in East Africa. PMID:29720181
Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical Information. PMID:29719869
Characterization of Chicken Tumor Necrosis Factor-α, a Long Missed Cytokine in Birds. PMID:29719531
A revision of "blanket-hermit crabs" of the genus Paguropsis Henderson, 1888, with the description of a new genus and five new species (Crustacea, Anomura, Diogenidae). PMID:29719474
Defining the impact of melanopsin missense polymorphisms using in vivo functional rescue. PMID:29718372
Genomic analysis and immune response in a murine mastitis model of vB_EcoM-UFV13, a potential biocontrol agent for use in dairy cows. PMID:29717158
The AWPM-19 Family Protein OsPM1 Mediates Abscisic Acid Influx and Drought Response in Rice. PMID:29716991
A phylogenetic analysis of the Primnoidae (Anthozoa: Octocorallia: Calcaxonia) with analyses of character evolution and a key to the genera and subgenera. PMID:29716521
Ceratomyxa gouletti n. sp. (Myxosporea: Ceratomyxidae), a parasite of the red scorpionfish Scorpaena scrofa (L.) from Tunisian waters. PMID:29713903
Expanding an expanded genome: long-read sequencing of Trypanosoma cruzi. PMID:29708484
In-silico Designing and Testing of Primers for Sanger Genome Sequencing of Dengue Virus Types of Asian Origin. PMID:29707045
The Egyptian Rousette Genome Reveals Unexpected Features of Bat Antiviral Immunity. PMID:29706541
The impact of vegan production on the kimchi microbiome. PMID:29706333
Molecular epidemiology of human adenovirus infections in Denmark, 2011-2016. PMID:29704734
OMGene: mutual improvement of gene models through optimisation of evolutionary conservation. PMID:29703150
Ginkgo biloba's footprint of dynamic Pleistocene history dates back only 390,000 years ago. PMID:29703145
Extensive mitochondrial gene rearrangements in Ctenophora: insights from benthic Platyctenida. PMID:29703131
Hv 1 Proton Channels in Dinoflagellates: Not Just for Bioluminescence? PMID:29698585
Hidden diversity: Phylogeography of genus Ototyphlonemertes Diesing, 1863 (Ototyphlonemertidae: Hoplonemertea) reveals cryptic species and high diversity in Chilean populations. PMID:29698411
Signatures of DNA Methylation across Insects Suggest Reduced DNA Methylation Levels in Holometabola. PMID:29697817
Investigation of genetic diversity and epidemiological characteristics of Pasteurella multocida isolates from poultry in southwest China by population structure, multi-locus sequence typing and virulence-associated gene profile analysis. PMID:29695681
The chloroplast genome sequence of bittersweet (Solanum dulcamara): Plastid genome structure evolution in Solanaceae. PMID:29694416
Ancient DNA from latrines in Northern Europe and the Middle East (500 BC-1700 AD) reveals past parasites and diet. PMID:29694397
Complete Chloroplast Genome of Cercis chuniana (Fabaceae) with Structural and Genetic Comparison to Six Species in Caesalpinioideae. PMID:29693617
Kindia (Pavetteae, Rubiaceae), a new cliff-dwelling genus with chemically profiled colleter exudate from Mt Gangan, Republic of Guinea. PMID:29692954
Genome Wide Identification, Evolutionary, and Expression Analysis of VQ Genes from Two Pyrus Species. PMID:29690608
Comparative genomics of bdelloid rotifers: Insights from desiccating and nondesiccating species. PMID:29689044
Rates of Mutation and Recombination in Siphoviridae Phage Genome Evolution over Three Decades. PMID:29688542
Ultradeep single-molecule real-time sequencing of HIV envelope reveals complete compartmentalization of highly macrophage-tropic R5 proviral variants in brain and CXCR4-using variants in immune and peripheral tissues. PMID:29687407
Molecular approaches uncover cryptic diversity in intertidal Ligia isopods (Crustacea, Isopoda, Ligiidae) across the southern Africa coastline. PMID:29686947
Genetic exchange and reassignment in Porphyromonas gingivalis. PMID:29686783
Two new species and one new record of the genus Tylopilus (Boletaceae) from Indian Himalaya with morphological details and phylogenetic estimations. PMID:29686503
The Northeast Chinese species of Psathyrella (Agaricales, Psathyrellaceae). PMID:29686502
The Most Developmentally Truncated Fishes Show Extensive Hox Gene Loss and Miniaturized Genomes. PMID:29684203
Computationally identified novel agonists for GPRC6A. PMID:29684031
TAS3 miR390-dependent loci in non-vascular land plants: towards a comprehensive reconstruction of the gene evolutionary history. PMID:29682420
Bacterial Communities of Diatoms Display Strong Conservation Across Strains and Time. PMID:29681892
New nematicidal and antimicrobial secondary metabolites from a new species in the new genus, Pseudobambusicola thailandica. PMID:29681740
New species of Cylindrocladiella from plantation soils in South-East Asia. PMID:29681735
Phylloporia lonicerae (Hymenochaetales, Basidiomycota), a new species on Lonicera japonica from Japan and an identification key to worldwide species of Phylloporia. PMID:29681730
Partnerships Between Ambrosia Beetles and Fungi: Lineage-Specific Promiscuity Among Vectors of the Laurel Wilt Pathogen, Raffaelea lauricola. PMID:29675704
Parallel evolution of Batesian mimicry supergene in two Papilio butterflies, P. polytes and P. memnon. PMID:29675466
Home at Last II: Gerbera hieracioides (Kunth) Zardini (Mutisieae, Asteraceae) is really a Chaptalia. PMID:29674929
A new species of the genus Pseudocrangonyx (Crustacea, Amphipoda, Pseudocrangonyctidae) from Korea. PMID:29674860
Culturing of female bladder bacteria reveals an interconnected urogenital microbiota. PMID:29674608
The complete replicons of 16 Ensifer meliloti strains offer insights into intra- and inter-replicon gene transfer, transposon-associated loci, and repeat elements. PMID:29671722
Home at last III: Transferring Uechtritzia and Asian Gerbera species into Oreoseris (Compositae, Mutisieae). PMID:29670450
Renewing Felsenstein's phylogenetic bootstrap in the era of big data. PMID:29670290
Variability Studies of Two Prunus-Infecting Fabaviruses with the Aid of High-Throughput Sequencing. PMID:29670059
Horizontal transfer of retrotransposons between bivalves and other aquatic species of multiple phyla. PMID:29669918
Interlaboratory Comparison of Six Real-Time PCR Assays for Detection of Bovine Leukemia Virus Proviral DNA. PMID:29669790
Identification of two different chemosensory pathways in representatives of the genus Halomonas. PMID:29669514
MitoFish and MiFish Pipeline: A Mitochondrial Genome Database of Fish with an Analysis Pipeline for Environmental DNA Metabarcoding. PMID:29668970
Chloroplast variation is incongruent with classification of the Australian bloodwood eucalypts (genus Corymbia, family Myrtaceae). PMID:29668710
Massive over-representation of solute-binding proteins (SBPs) from the tripartite tricarboxylate transporter (TTT) family in the genome of the α-proteobacterium Rhodoplanes sp. Z2-YC6860. PMID:29667925
Genomic non-coding regions reveal hidden patterns of mumps virus circulation in Spain, 2005 to 2015. PMID:29667574
Evolution of dopamine receptors: phylogenetic evidence suggests a later origin of the DRD2l and DRD4rs dopamine receptor gene lineages. PMID:29666757
Unifying the global phylogeny and environmental distribution of ammonia-oxidising archaea based on amoA genes. PMID:29666365
Genetic variability in the sdrD gene in Staphylococcus aureus from healthy nasal carriers. PMID:29661152
Convergent Acquisition of Nonembryonic Development in Styelid Ascidians. PMID:29660002
A sequence family database built on ECOD structural domains. PMID:29659718
Rhizarian 'Novel Clade 10' Revealed as Abundant and Diverse Planktonic and Terrestrial Flagellates, including Aquavolon n. gen. PMID:29658156
High Percentage of Isomeric Human MicroRNA and Their Analytical Challenges. PMID:29657271
New Penicillium and Talaromyces species from honey, pollen and nests of stingless bees. PMID:29654567
Full Genome Sequencing Reveals New Southern African Territories Genotypes Bringing Us Closer to Understanding True Variability of Foot-and-Mouth Disease Virus in Africa. PMID:29652800
HEx: A heterologous expression platform for the discovery of fungal natural products. PMID:29651464
Genome wide analysis of the transition to pathogenic lifestyles in Magnaporthales fungi. PMID:29651164
Evidence of exposure of domestic pigs to Highly Pathogenic Avian Influenza H5N1 in Nigeria. PMID:29651056
Next-Generation Sequencing of the Complete Mitochondrial Genome of the Endangered Species Black Lion Tamarin Leontopithecus chrysopygus (Primates) and Mitogenomic Phylogeny Focusing on the Callitrichidae Family. PMID:29650540
Evidence for loss and reacquisition of alcoholic fermentation in a fructophilic yeast lineage. PMID:29648535
Pervasive Chimerism in the Replication-Associated Proteins of Uncultured Single-Stranded DNA Viruses. PMID:29642587
Molecular, Morphological, and Biological Differentiation between Anagrus virlai sp. n., an Egg Parasitoid of the Corn Leafhopper Dalbulus maidis (Hemiptera: Cicadellidae) in the New World, and Anagrus incarnatus from the Palaearctic Region (Hymenoptera: Mymaridae). PMID:29637522
Expression of RPRM/rprm in the Olfactory System of Embryonic Zebrafish (Danio rerio). PMID:29636669
Testing the impact of effective population size on speciation rates - a negative correlation or lack thereof in lichenized fungi. PMID:29636516
New World feline APOBEC3 potently controls inter-genus lentiviral transmission. PMID:29636069
Large Diversity of Nonstandard Genes and Dynamic Evolution of Chloroplast Genomes in Siphonous Green Algae (Bryopsidales, Chlorophyta). PMID:29635329
Piggy: a rapid, large-scale pan-genome analysis tool for intergenic regions in bacteria. PMID:29635296
SUMOylation is required for fungal development and pathogenicity in the rice blast fungus Magnaporthe oryzae. PMID:29633464
AFLP Approach Reveals Variability in Phragmites australis: Implications for Its Die-Back and Evidence for Genotoxic Effects. PMID:29632544
Recurrent acquisition of cytosine methyltransferases into eukaryotic retrotransposons. PMID:29632298
The potential of compounds isolated from Xylaria spp. as antifungal agents against anthracnose. PMID:29631892
A Y-Encoded Suppressor of Feminization Arose via Lineage-Specific Duplication of a Cytokinin Response Regulator in Kiwifruit. PMID:29626069
Regional patterns of genetic diversity in swine influenza A viruses in the United States from 2010 to 2016. PMID:29624873
Accelerated diversification is related to life history and locomotion in a hyperdiverse lineage of microbial eukaryotes (Diatoms, Bacillariophyta). PMID:29624698
Comparative Chloroplast Genomics of Gossypium Species: Insights Into Repeat Sequence Variations and Phylogeny. PMID:29619041
IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split read analysis. PMID:29618752
Chloroplast genome analyses and genomic resource development for epilithic sister genera Oresitrophe and Mukdenia (Saxifragaceae), using genome skimming data. PMID:29618324
DDX49 is an RNA helicase that affects translation by regulating mRNA export and the levels of pre-ribosomal RNA. PMID:29618122
Alignment Modulates Ancestral Sequence Reconstruction Accuracy. PMID:29618097
Improving the annotation of the Heterorhabditis bacteriophora genome. PMID:29617768
Routine Whole-Genome Sequencing for Outbreak Investigations of Staphylococcus aureus in a National Reference Center. PMID:29616014
Functional metagenomic approach to identify overlooked antibiotic resistance mutations in bacterial rRNA. PMID:29615654
Passion Fruit Chlorotic Mottle Virus: Molecular Characterization of a New Divergent Geminivirus in Brazil. PMID:29614801
Comparative Plastid Genomes of Primula Species: Sequence Divergence and Phylogenetic Relationships. PMID:29614787
Genomic Characterization of Sixteen Yersinia enterocolitica-Infecting Podoviruses of Pig Origin. PMID:29614052
The active microbial community more accurately reflects the anaerobic digestion process: 16S rRNA (gene) sequencing as a predictive tool. PMID:29609653
Ancient Evolution of Mammarenaviruses: Adaptation via Changes in the L Protein and No Evidence for Host-Virus Codivergence. PMID:29608723
FIGL1 and its novel partner FLIP form a conserved complex that regulates homologous recombination. PMID:29608566
Genome rearrangements and phylogeny reconstruction in Yersinia pestis. PMID:29607260
Phylogenetic insights on Mediterranean and Afrotropical Rhipicephalus species (Acari: Ixodida) based on mitochondrial DNA. PMID:29605833
Genomic, Recombinational and Phylogenetic Characterization of Global Feline Herpesvirus 1 Isolates. PMID:29605685
Clarifying the Relationships between Microsporidia and Cryptomycota. PMID:29603494
Different Natural Selection Pressures on the atpF Gene in Evergreen Sclerophyllous and Deciduous Oak Species: Evidence from Comparative Analysis of the Complete Chloroplast Genome of Quercus aquifolioides with Other Oak Species. PMID:29601535
Whole-Genome Comparison Reveals Heterogeneous Divergence and Mutation Hotspots in Chloroplast Genome of Eucommia ulmoides Oliver. PMID:29601491
Assembly of the Boechera retrofracta Genome and Evolutionary Analysis of Apomixis-Associated Genes. PMID:29597328
Complete chloroplast genome sequence and comparative analysis of loblolly pine (Pinus taeda L.) with related species. PMID:29596414
14-3-3 Proteins in Plant Hormone Signaling: Doing Several Things at Once. PMID:29593761
Insulin-Like Growth Factor-Binding Proteins of Teleost Fishes. PMID:29593649
Detection of Coccidioides posadasii from xerophytic environments in Venezuela reveals risk of naturally acquired coccidioidomycosis infections. PMID:29593263
The draft genome of Kipferlia bialata reveals reductive genome evolution in fornicate parasites. PMID:29590215
Using mating-type loci to improve taxonomy of the Tuber indicum complex, and discovery of a new species, T. longispinosum. PMID:29590201
Succinate-acetate permease from Citrobacter koseri is an anion channel that unidirectionally translocates acetate. PMID:29588525
Extensive molecular tinkering in the evolution of the membrane attachment mode of the Rheb GTPase. PMID:29588502
Origin and evolution of the nuclear auxin response system. PMID:29580381
HMMER Cut-off Threshold Tool (HMMERCTTER): Supervised classification of superfamily protein sequences with a reliable cut-off threshold. PMID:29579071
Bioinformatic characterization of the Anoctamin Superfamily of Ca2+-activated ion channels and lipid scramblases. PMID:29579047
Group-specific environmental sequencing reveals high levels of ecological heterogeneity across the microsporidian radiation. PMID:29578312
Out of Asia: mitochondrial evolutionary history of the globally introduced supralittoral isopod Ligia exotica. PMID:29576934
Phylodynamic analysis and molecular diversity of the avian infectious bronchitis virus of chickens in Brazil. PMID:29574164
Homologous Recombination in Core Genomes Facilitates Marine Bacterial Adaptation. PMID:29572211
Isolation, Characterization, and Antibacterial Activity of Hard-to-Culture Actinobacteria from Cave Moonmilk Deposits. PMID:29565274
Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes. PMID:29563166
GraftM: a tool for scalable, phylogenetically informed classification of genes within metagenomes. PMID:29562347
Reconstructing the genetic history of late Neanderthals. PMID:29562232
Phylogenetic analyses and antimicrobial resistance profiles of Campylobacter spp. from diarrhoeal patients and chickens in Botswana. PMID:29561903
Phylogenetic affinities of the sequestrate genus Rhodactina (Boletaceae), with a new species, R. rostratispora from Thailand. PMID:29559826
Resolution of phylogenetic position of Nigrofomitaceae within Hymenochaetales (Basidiomycota) and Nigrofomes sinomelanoporus sp. nov. (Nigrofomitaceae) from China. PMID:29559823
Ophiostomatoid fungi associated with conifer-infesting beetles and their phoretic mites in Yunnan, China. PMID:29559821
Comparative Analysis of Surface Layer Glycoproteins and Genes Involved in Protein Glycosylation in the Genus Haloferax. PMID:29558455
Hepatozoon apri n. sp. (Adeleorina: Hepatozoidae) from the Japanese wild boar Sus scrofa leucomystax (Mammalia: Cetartiodactyla). PMID:29556469
Genetic connectivity from the Arctic to the Antarctic: Sclerolinum contortum and Nicomache lokii (Annelida) are both widespread in reducing environments. PMID:29556042
Betaine Lipid Is Crucial for Adapting to Low Temperature and Phosphate Deficiency in Nannochloropsis. PMID:29555786
Tracing Genomic Divergence of Vibrio Bacteria in the Harveyi Clade. PMID:29555692
Halioticida noduliformans infection in eggs of lobster (Homarus gammarus) reveals its generalist parasitic strategy in marine invertebrates. PMID:29555081
Along for the ride or missing it altogether: exploring the host specificity and diversity of haemogregarines in the Canary Islands. PMID:29554983
Genome-Wide Analysis of Corynespora cassiicola Leaf Fall Disease Putative Effectors. PMID:29551995
Cas13d Is a Compact RNA-Targeting Type VI CRISPR Effector Positively Modulated by a WYL-Domain-Containing Accessory Protein. PMID:29551514
Transcriptome Engineering with RNA-Targeting Type VI-D CRISPR Effectors. PMID:29551272
Transposase-DNA Complex Structures Reveal Mechanisms for Conjugative Transposition of Antibiotic Resistance. PMID:29551265
Phylogenetic evidence for an ancestral coevolution between a major clade of coccidian parasites and elasmobranch hosts. PMID:29549563
Mapping the virome in wild-caught Aedes aegypti from Cairns and Bangkok. PMID:29549363
Environmental DNA filtration techniques affect recovered biodiversity. PMID:29549344
A new yeti crab phylogeny: Vent origins with indications of regional extinction in the East Pacific. PMID:29547631
Development and Application of Genomic Resources in an Endangered Palaeoendemic Tree, Parrotia subaequalis (Hamamelidaceae) From Eastern China. PMID:29545814
The CLAVATA receptor FASCIATED EAR2 responds to distinct CLE peptides by signaling through two downstream effectors. PMID:29543153
A c-di-GMP-Modulating Protein Regulates Swimming Motility of Burkholderia cenocepacia in Response to Arginine and Glutamate. PMID:29541628
Xanthomonas citri jumbo phage XacN1 exhibits a wide host range and high complement of tRNA genes. PMID:29540765
PcxL and HpxL are flavin-dependent, oxime-forming N-oxidases in phosphonocystoximic acid biosynthesis in Streptomyces. PMID:29540479
Carbonate-sensitive phytotransferrin controls high-affinity iron uptake in diatoms. PMID:29539640
Molecular evolution and functional divergence of eukaryotic translation initiation factor 2-alpha kinases. PMID:29538447
Hidden species diversity in Sylvirana nigrovittata (Amphibia: Ranidae) highlights the importance of taxonomic revisions in biodiversity conservation. PMID:29538432
Sharing of photobionts in sympatric populations of Thamnolia and Cetraria lichens: evidence from high-throughput sequencing. PMID:29535321
Formation of chimeric genes with essential functions at the origin of eukaryotes. PMID:29534719
Ensembles generated from crystal structures of single distant homologues solve challenging molecular-replacement cases in AMPLE. PMID:29533226
Sequence and functional characterization of MIRNA164 promoters from Brassica shows copy number dependent regulatory diversification among homeologs. PMID:29532337
Effect of fairy ring bacteria on the growth of Tricholoma matsutake in vitro culture. PMID:29532183
Chloroplastic and nuclear diversity of wild beets at a large geographical scale: Insights into the evolutionary history of the Beta section. PMID:29531703
Multiple origins of downy mildews and mito-nuclear discordance within the paraphyletic genus Phytophthora. PMID:29529094
Extended and Continuous Decline in Effective Population Size Results in Low Genomic Diversity in the World's Rarest Hyena Species, the Brown Hyena. PMID:29528428
Rapid Global Spread of wRi-like Wolbachia across Multiple Drosophila. PMID:29526588
The effect of auxin (indole-3-acetic acid) on the growth rate and tropism of the sporangiophore of Phycomyces blakesleeanus and identification of auxin-related genes. PMID:29523949
Transcriptional Activator GmrA, Encoded in Genomic Island OI-29, Controls the Motility of Enterohemorrhagic Escherichia coli O157:H7. PMID:29520261
The Complete Chloroplast Genomes of Two Lancea Species with Comparative Analysis. PMID:29518967
Environmental Metagenomic Assemblies Reveal Seven New Highly Divergent Chlamydial Lineages and Hallmarks of a Conserved Intracellular Lifestyle. PMID:29515524
Comparative genomics sheds light on niche differentiation and the evolutionary history of comammox Nitrospira. PMID:29515170
Probing the Phylogenomics and Putative Pathogenicity Genes of Pythium insidiosum by Oomycete Genome Analyses. PMID:29515152
Marmota himalayana in the Qinghai-Tibetan plateau as a special host for bi-segmented and unsegmented picobirnaviruses. PMID:29511159
Cysteine peptidases of Eudiplozoon nipponicum: a broad repertoire of structurally assorted cathepsins L in contrast to the scarcity of cathepsins B in an invasive species of haematophagous monogenean of common carp. PMID:29510760
Lineage-specific plasmid acquisition and the evolution of specialized pathogens in Bacillus thuringiensis and the Bacillus cereus group. PMID:29509989
Psychrophrynella glauca sp. n., a new species of terrestrial-breeding frogs (Amphibia, Anura, Strabomantidae) from the montane forests of the Amazonian Andes of Puno, Peru. PMID:29507835
Guanidinium export is the primal function of SMR family transporters. PMID:29507227
Cytological and genome size data analyzed in a phylogenetic frame: Evolutionary implications concerning Sisyrinchium taxa (Iridaceae: Iridoideae). PMID:29505063
Comparative Genomic Analysis of a Clinical Isolate of Klebsiella quasipneumoniae subsp. similipneumoniae, a KPC-2 and OKP-B-6 Beta-Lactamases Producer Harboring Two Drug-Resistance Plasmids from Southeast Brazil. PMID:29503635
Plant Rhizosphere Selection of Plasmodiophorid Lineages from Bulk Soil: The Importance of "Hidden" Diversity. PMID:29503632
Fungal Planet description sheets: 625-715. PMID:29503478
Morphological reassessment and molecular phylogenetic analyses of Amauroderma s.lat. raised new perspectives in the generic classification of the Ganodermataceae family. PMID:29503477
A synopsis of the saddle fungi (Helvella: Ascomycota) in Europe - species delimitation, taxonomy and typification. PMID:29503476
Nothophytophthora gen. nov., a new sister genus of Phytophthora from natural and semi-natural ecosystems. PMID:29503474
Phylogenetic reassessment of Nigrospora: Ubiquitous endophytes, plant and human pathogens. PMID:29503473
Phylogenetic placement within Lecanoromycetes of lichenicolous fungi associated with Cladonia and some other genera. PMID:29503472
Phylogeny of the order Phyllachorales (Ascomycota, Sordariomycetes): among and within order relationships based on five molecular loci. PMID:29503471
High species diversity in Colletotrichum associated with citrus diseases in Europe. PMID:29503469
Evolutionary analysis of Porcine circovirus 3 (PCV3) indicates an ancient origin for its current strains and a worldwide dispersion. PMID:29502241
Potential for Methanosarcina to Contribute to Uranium Reduction during Acetate-Promoted Groundwater Bioremediation. PMID:29500492
Factors driving metabolic diversity in the budding yeast subphylum. PMID:29499717
Crystal structure of the MSMEG_4306 gene product from Mycobacterium smegmatis. PMID:29497021
Complete Mitochondrial Genome of Suwallia teleckojensis (Plecoptera: Chloroperlidae) and Implications for the Higher Phylogeny of Stoneflies. PMID:29495588
True Lies: Using Proteomics to Assess the Accuracy of Transcriptome-Based Venomics in Centipedes Uncovers False Positives and Reveals Startling Intraspecific Variation in Scolopendra Subspinipes. PMID:29495554
UBCG: Up-to-date bacterial core gene set and pipeline for phylogenomic tree reconstruction. PMID:29492869
A preliminary molecular phylogeny shows Japanese and Austrian populations of the red mite Balaustium murorum (Acari: Trombidiformes: Erythraeidae) to be closely related. PMID:29492722
Rare horizontal transmission does not hide long-term inheritance of SINE highly conserved domains in the metazoan evolution. PMID:29491954
Cultivation and Genomic Analysis of "Candidatus Nitrosocaldus islandicus," an Obligately Thermophilic, Ammonia-Oxidizing Thaumarchaeon from a Hot Spring Biofilm in Graendalur Valley, Iceland. PMID:29491853
Study of the Metatranscriptome of Eight Social and Solitary Wild Bee Species Reveals Novel Viruses and Bee Parasites. PMID:29491849
Euphyllophyte Paleoviruses Illuminate Hidden Diversity and Macroevolutionary Mode of Caulimoviridae. PMID:29491164
Widespread Distribution and Functional Specificity of the Copper Importer CcoA: Distinct Cu Uptake Routes for Bacterial Cytochrome c Oxidases. PMID:29487231
The End of a 60-year Riddle: Identification and Genomic Characterization of an Iridovirus, the Causative Agent of White Fat Cell Disease in Zooplankton. PMID:29487186
The predictive utility of the plant phylogeny in identifying sources of cardiovascular drugs. PMID:29486635
Fusion of piggyBac-like transposons and herpesviruses occurs frequently in teleosts. PMID:29484202
New insights from Thailand into the maternal genetic history of Mainland Southeast Asia. PMID:29483671
SARS-CoV related Betacoronavirus and diverse Alphacoronavirus members found in western old-world. PMID:29482919
Plastid Genome Evolution in the Early-Diverging Legume Subfamily Cercidoideae (Fabaceae). PMID:29479365
Biogeography and genetic diversity of the atlantid heteropods. PMID:29479121
Mycoplasma-related endobacteria within Mortierellomycotina fungi: diversity, distribution and functional insights into their lifestyle. PMID:29476142
Diversity and evolution of four-domain voltage-gated cation channels of eukaryotes and their ancestral functional determinants. PMID:29476068
STAR Chimeric Post for rapid detection of circular RNA and fusion transcripts. PMID:29474638
A conserved leucine zipper-like motif accounts for strong tetramerization capabilities of SEPALLATA-like MADS-domain transcription factors. PMID:29474620
ViCTree: an automated framework for taxonomic classification from protein sequences. PMID:29474519
Benzyl-2-Acetamido-2-Deoxy-α-d-Galactopyranoside Increases Human Immunodeficiency Virus Replication and Viral Outgrowth Efficacy In Vitro. PMID:29472913
Photosynthesis Is Widely Distributed among Proteobacteria as Demonstrated by the Phylogeny of PufLM Reaction Center Proteins. PMID:29472894
Rhachotropis (Eusiroidea, Amphipoda) from the North East Atlantic. PMID:29472763
A genetic fingerprint of Amphipoda from Icelandic waters - the baseline for further biodiversity and biogeography studies. PMID:29472762
An ancient family of lytic polysaccharide monooxygenases with roles in arthropod development and biomass digestion. PMID:29472725
Whole genome diversity of inherited chromosomally integrated HHV-6 derived from healthy individuals of diverse geographic origin. PMID:29472617
Phylogeny with introgression in Habronattus jumping spiders (Araneae: Salticidae). PMID:29471785
Two essential Thioredoxins mediate apicoplast biogenesis, protein import, and gene expression in Toxoplasma gondii. PMID:29470517
Co-circulation of all the four dengue virus serotypes and detection of a novel clade of DENV-4 (genotype I) virus in Pune, India during 2016 season. PMID:29470509
Development of hypobranchial muscles with special reference to the evolution of the vertebrate neck. PMID:29468087
A comparative analysis of Wolbachia-induced host reproductive phenotypes reveals transition rate heterogeneity. PMID:29468014
Genome-Based Characterization of Biological Processes That Differentiate Closely Related Bacteria. PMID:29467735
NLR surveillance of essential SEC-9 SNARE proteins induces programmed cell death upon allorecognition in filamentous fungi. PMID:29463729
Structures of the prefusion form of measles virus fusion protein in complex with inhibitors. PMID:29463726
The genome of Austrofundulus limnaeus offers insights into extreme vertebrate stress tolerance and embryonic development. PMID:29463212
Molecular Phylogeny and Dating of Forsythieae (Oleaceae) Provide Insight into the Miocene History of Eurasian Temperate Shrubs. PMID:29459880
GlcNAc-1-P-transferase-tunicamycin complex structure reveals basis for inhibition of N-glycosylation. PMID:29459785
Hologenomic adaptations underlying the evolution of sanguivory in the common vampire bat. PMID:29459707
The slowdown of Y chromosome expansion in dioecious Silene latifolia due to DNA loss and male-specific silencing of retrotransposons. PMID:29458354
Structural Characterization and Directed Evolution of a Novel Acetyl Xylan Esterase Reveals Thermostability Determinants of the Carbohydrate Esterase 7 Family. PMID:29453256
Antigenic and genetic evolution of contemporary swine H1 influenza viruses in the United States. PMID:29453058
Convergent Amino Acid Signatures in Polyphyletic Campylobacter jejuni Subpopulations Suggest Human Niche Tropism. PMID:29452359
Plastid Genome Comparative and Phylogenetic Analyses of the Key Genera in Fagaceae: Highlighting the Effect of Codon Composition Bias in Phylogenetic Inference. PMID:29449857
Genome Sequences of 12 Pseudomonas lundensis Strains Isolated from the Lungs of Humans. PMID:29449399
Discovery of two new species of Crotalaria (Leguminosae, Crotalarieae) from Western Ghats, India. PMID:29447200
Molecular Features Underlying Selectivity in Chicken Bitter Taste Receptors. PMID:29445727
Comparative genomic inference suggests mixotrophic lifestyle for Thorarchaeota. PMID:29445130
Assembly of highly repetitive genomes using short reads: the genome of discrete typing unit III Trypanosoma cruzi strain 231. PMID:29442617
Growing old, yet staying young: The role of telomeres in bats' exceptional longevity. PMID:29441358
Inter-domain microbial diversity within the coral holobiont Siderastrea siderea from two depth habitats. PMID:29441234
Light color acclimation is a key process in the global ocean distribution of Synechococcus cyanobacteria. PMID:29440402
Comparative genome analysis of 52 fish species suggests differential associations of repetitive elements with their living aquatic environments. PMID:29439662
The Complete Chloroplast Genome of a Key Ancestor of Modern Roses, Rosa chinensis var. spontanea, and a Comparison with Congeneric Species. PMID:29439505
Evidence for contemporary plant mitoviruses. PMID:29438872
Coarse-grained molecular dynamics simulations reveal lipid access pathways in P-glycoprotein. PMID:29437858
Antifungal Susceptibility of the Aspergillus viridinutans Complex: Comparison of Two In Vitro Methods. PMID:29437620
Characterization of the Gamboa Virus Serogroup (Orthobunyavirus Genus, Peribunyaviridae Family). PMID:29436340
Hidden endemism, deep polyphyly, and repeated dispersal across the Isthmus of Tehuantepec: Diversification of the White-collared Seedeater complex (Thraupidae: Sporophila torqueola). PMID:29435260
Evolution of a key trait greatly affects underground community assembly process through habitat adaptation in earthworms. PMID:29435247
Human-mediated introduction of introgressed deer across Wallace's line: Historical biogeography of Rusa unicolor and R. timorensis. PMID:29435225
Comparative genomic analysis reveals the evolution and environmental adaptation strategies of vibrios. PMID:29433445
Whitefly predation and extensive mesonotum color polymorphism in an Acletoxenus population from Singapore (Diptera, Drosophilidae). PMID:29430204
Identification and functional characterisation of an allene oxide synthase from grapevine (Vitis vinifera L. Sauvignon blanc). PMID:29427121
Giant fish-killing water bug reveals ancient and dynamic venom evolution in Heteroptera. PMID:29427076
African ancestry of New World, Bemisia tabaci-whitefly species. PMID:29426821
Genetic diversity of equine herpesvirus 1 isolated from neurological, abortigenic and respiratory disease outbreaks. PMID:29423949
Occurrence and molecular characterization of Giardia duodenalis cysts and Cryptosporidium oocysts in raw water samples from the Rímac River, Peru. PMID:29423699
Shifts in diversification rates and host jump frequencies shaped the diversity of host range among Sclerotiniaceae fungal plant pathogens. PMID:29421852
Effect of fruiting body bacteria on the growth of Tricholoma matsutake and its related molds. PMID:29420560
Complete mitochondrial genome sequence of the "copper moss" Mielichhoferia elongata reveals independent nad7 gene functionality loss. PMID:29416956
A 250 plastome phylogeny of the grass family (Poaceae): topological support under different data partitions. PMID:29416954
Revision of the genus-group Hystricella R. T. Lowe, 1855 from Porto Santo (Madeira Archipelago), with descriptions of new recent and fossil taxa (Gastropoda, Helicoidea, Geomitridae). PMID:29416404
Surface ocean metabarcoding confirms limited diversity in planktonic foraminifera but reveals unknown hyper-abundant lineages. PMID:29416071
PhcrTx2, a New Crab-Paralyzing Peptide Toxin from the Sea Anemone Phymanthus crucifer. PMID:29414882
Sudden emergence of human infections with H7N9 avian influenza A virus in Hubei province, central China. PMID:29410505
Origin and dispersal of Hepatitis E virus. PMID:29410449
Developmental evolution of the forebrain in cavefish, from natural variations in neuropeptides to behavior. PMID:29405116
Morpho-Molecular Characterization of Two Ampelomyces spp. (Pleosporales) Strains Mycoparasites of Powdery Mildew of Hevea brasiliensis. PMID:29403464
Hemimetabolous genomes reveal molecular basis of termite eusociality. PMID:29403074
The last common ancestor of animals lacked the HIF pathway and respired in low-oxygen environments. PMID:29402379
Constraining uncertainty in the timescale of angiosperm evolution and the veracity of a Cretaceous Terrestrial Revolution. PMID:29399804
Morphological, chemical and species delimitation analyses provide new taxonomic insights into two groups of Rinodina. PMID:29398724
Comparative phosphoproteomic analysis reveals signaling networks regulating monopolar and bipolar cytokinesis. PMID:29396449
Wnt signaling and polarity in freshwater sponges. PMID:29394881
Gene duplication and dosage effects during the early emergence of C4 photosynthesis in the grass genus Alloteropsis. PMID:29394370
Evolutionary fates of universal stress protein paralogs in Platyhelminthes. PMID:29390964
Revisiting the phylogeography, demography and taxonomy of the frog genus Ptychadena in the Ethiopian highlands with the use of genome-wide SNP data. PMID:29389966
Evolution of pollen morphology in Loranthaceae. PMID:29386990
Plastid super-barcodes as a tool for species discrimination in feather grasses (Poaceae: Stipa). PMID:29386579
The Diverging Routes of BORIS and CTCF: An Interactomic and Phylogenomic Analysis. PMID:29385718
The State of Software for Evolutionary Biology. PMID:29385525
Does adaptation to vertebrate codon usage relate to flavivirus emergence potential? PMID:29385205
Insight into higher-level phylogeny of Neuropterida: Evidence from secondary structures of mitochondrial rRNA genes and mitogenomic data. PMID:29381758
Molecular phylogenetics of swimming crabs (Portunoidea Rafinesque, 1815) supports a revised family-level classification and suggests a single derived origin of symbiotic taxa. PMID:29379685
KLF1 gene and borderline hemoglobin A2 in Saudi population. PMID:29379553
Designing a B Cell-Based Vaccine against a Highly Variable Hepatitis C Virus. PMID:29379486
Control of primary metabolism by a virulence regulatory network promotes robustness in a plant pathogen. PMID:29379078
Lytic xylan oxidases from wood-decay fungi unlock biomass degradation. PMID:29377002
Genome-wide single-nucleotide polymorphism data reveal cryptic species within cryptic freshwater snail species-The case of the Ancylus fluviatilis species complex. PMID:29375779
Current Knowledge and Computational Techniques for Grapevine Meta-Omics Analysis. PMID:29375610
Tomato Apical Leaf Curl Virus: A Novel, Monopartite Geminivirus Detected in Tomatoes in Argentina. PMID:29375528
Allele phasing is critical to revealing a shared allopolyploid origin of Medicago arborea and M. strasseri (Fabaceae). PMID:29374461
Phylogenomic reclassification of the world's most venomous spiders (Mygalomorphae, Atracinae), with implications for venom evolution. PMID:29374214
An ancient Sec10-formin fusion provides insights into actin-mediated regulation of exocytosis. PMID:29374070
More sex chromosomes than autosomes in the Amazonian frog Leptodactylus pentadactylus. PMID:29372309
FUSTr: a tool to find gene families under selection in transcriptomes. PMID:29372116
Ten New Recorded Species of Macrofungi on Ulleung Island, Korea. PMID:29371796
Taxonomy and Phylogeny of Peronospora Species (Oomycota) Parasitic to Stellaria and Pseudostellaria in Korea, with the Introduction of Peronospora casparyi sp. nov. PMID:29371794
A global ocean atlas of eukaryotic genes. PMID:29371626
Diversity of Cell Wall Related Proteins in Human Pathogenic Fungi. PMID:29371499
Cross-kingdom auxiliary subunit modulation of a voltage-gated sodium channel. PMID:29371400
Phylogenetic analysis of apicomplexan parasites infecting commercially valuable species from the North-East Atlantic reveals high levels of diversity and insights into the evolution of the group. PMID:29370873
Expression of cocoa genes in Saccharomyces cerevisiae improves cocoa butter production. PMID:29370801
Gut Microbial Diversity in Women With Polycystic Ovary Syndrome Correlates With Hyperandrogenism. PMID:29370410
Fungal diversity in oil palm leaves showing symptoms of Fatal Yellowing disease. PMID:29370299
Genome-wide protein phylogenies for four African cichlid species. PMID:29368592
Phylogenetic classification and generic delineation of Calyptosphaeria gen. nov., Lentomitella, Spadicoides and Torrentispora (Sordariomycetes). PMID:29367793
Contrasting maternal and paternal genetic variation of hunter-gatherer groups in Thailand. PMID:29367746
Plastid translation is essential for lateral root stem cell patterning in Arabidopsis thaliana. PMID:29367414
A widely conserved bacterial cytoskeletal component influences unique helical shape and motility of the spirochete Leptospira biflexa. PMID:29363884
Evolutionary analyses of the avirulence effector AvrStb6 in global populations of Zymoseptoria tritici identify candidate amino acids involved in recognition. PMID:29363872
The global origins of resistance-associated variants in the non-structural proteins 5A and 5B of the hepatitis C virus. PMID:29362671
The Ancient Link between G-Protein-Coupled Receptors and C-Terminal Phospholipid Kinase Domains. PMID:29362235
Structural divergence creates new functional features in alphavirus genomes. PMID:29361131
Comments on species divergence in the genus Sphaerium (Bivalvia) and phylogenetic affinities of Sphaerium nucleus and S. corneum var. mamillanum based on karyotypes and sequences of 16S and ITS1 rDNA. PMID:29360839
Phylogeny of Vibrio vulnificus from the Analysis of the Core-Genome: Implications for Intra-Species Taxonomy. PMID:29358930
The invasive MED/Q Bemisia tabaci genome: a tale of gene loss and gene gain. PMID:29357812
Absence of HIV-1 Drug Resistance Mutations Supports the Use of Dolutegravir in Uganda. PMID:29353487
The common bean COK-4 and the Arabidopsis FER kinase domain share similar functions in plant growth and defence. PMID:29352746
The 'forma specialis' issue in Fusarium: A case study in Fusarium solani f. sp. pisi. PMID:29352160
Sox2 is required for olfactory pit formation and olfactory neurogenesis through BMP restriction and Hes5 upregulation. PMID:29352015
HERV-W group evolutionary history in non-human primates: characterization of ERV-W orthologs in Catarrhini and related ERV groups in Platyrrhini. PMID:29351742
Evolutionary Genetics of Cytoplasmic Incompatibility Genes cifA and cifB in Prophage WO of Wolbachia. PMID:29351633
Omega-3 fatty acid desaturase gene family from two ω-3 sources, Salvia hispanica and Perilla frutescens: Cloning, characterization and expression. PMID:29351555
Evidence of Adaptive Evolution and Relaxed Constraints in Sex-Biased Genes of South American and West Indies Fruit Flies (Diptera: Tephritidae). PMID:29346618
Functional role of the type 1 pilus rod structure in mediating host-pathogen interactions. PMID:29345620
Characterization of ent-kaurene synthase and kaurene oxidase involved in gibberellin biosynthesis from Scoparia dulcis. PMID:29340903
The complete plastome of macaw palm [Acrocomia aculeata (Jacq.) Lodd. ex Mart.] and extensive molecular analyses of the evolution of plastid genes in Arecaceae. PMID:29340796
Gene Turnover and Diversification of the α- and β-Globin Gene Families in Sauropsid Vertebrates. PMID:29340581
Environmental Sequencing Fills the Gap Between Parasitic Haplosporidians and Free-living Giant Amoebae. PMID:29336517
MERS-CoV spillover at the camel-human interface. PMID:29336306
A multi-omics study of the grapevine-downy mildew (Plasmopara viticola) pathosystem unveils a complex protein coding- and noncoding-based arms race during infection. PMID:29335535
Non-amidated and amidated members of the C-type allatostatin (AST-C) family are differentially distributed in the stomatogastric nervous system of the American lobster, Homarus americanus. PMID:29332202
Structure, function and evolution of the hemerythrin-like domain superfamily. PMID:29330894
Evolution of the Phosphatidylcholine Biosynthesis Pathways in Green Algae: Combinatorial Diversity of Methyltransferases. PMID:29330556
Tracheophyte genomes keep track of the deep evolution of the Caulimoviridae. PMID:29330451
Acquisition of a Novel Sulfur-Oxidizing Symbiont in the Gutless Marine Worm Inanidrilus exumae. PMID:29330187
The Effect of RNA Substitution Models on Viroid and RNA Virus Phylogenies. PMID:29325030
Continental synchronicity of human influenza virus epidemics despite climatic variation. PMID:29324895
Aspergillus subgenus Polypaecilum from the built environment. PMID:29317789
Phylogenomic Perspective on the Relationships and Evolutionary History of the Major Otocephalan Lineages. PMID:29317769
The evolution of substrate discrimination in macrolide antibiotic resistance enzymes. PMID:29317655
Comparative genomic analyses reveal the features for adaptation to nematodes in fungi. PMID:29315395
Genetic Diversity of Bartonella spp. in Wild Mammals and Ectoparasites in Brazilian Pantanal. PMID:29313064
Diverse CO2-Induced Responses in Physiology and Gene Expression among Eukaryotic Phytoplankton. PMID:29312232
Comparative Genomics of a Bovine Mycobacterium tuberculosis Isolate and Other Strains Reveals Its Potential Mechanism of Bovine Adaptation. PMID:29312206
Probing Genomic Aspects of the Multi-Host Pathogen Clostridium perfringens Reveals Significant Pangenome Diversity, and a Diverse Array of Virulence Factors. PMID:29312194
An AlgU-Regulated Antisense Transcript Encoded within the Pseudomonas syringae fleQ Gene Has a Positive Effect on Motility. PMID:29311280
Structural, Biochemical, and Evolutionary Characterizations of Glyoxylate/Hydroxypyruvate Reductases Show Their Division into Two Distinct Subfamilies. PMID:29309127
Inverted formin 2 regulates intracellular trafficking, placentation, and pregnancy outcome. PMID:29309034
Revision of the species of Lytopylus from Area de Conservación Guanacaste, northwestern Costa Rica (Hymenoptera, Braconidae, Agathidinae). PMID:29308026
The Comoros Show the Earliest Austronesian Gene Flow into the Swahili Corridor. PMID:29304377
Rapid genome shrinkage in a self-fertile nematode reveals sperm competition proteins. PMID:29302007
Stability of the Influenza Virus Hemagglutinin Protein Correlates with Evolutionary Dynamics. PMID:29299534
DNA barcoding of reef brittle stars (Ophiuroidea, Echinodermata) from the southwestern Indian Ocean evolutionary hot spot of biodiversity. PMID:29299292
Genome of Russian wheat aphid an economically important cereal aphid. PMID:29299110
Evolutionary Origin of OwlRep, a Megasatellite DNA Associated with Adaptation of Owl Monkeys to Nocturnal Lifestyle. PMID:29294004
Are Fireworms Venomous? Evidence for the Convergent Evolution of Toxin Homologs in Three Species of Fireworms (Annelida, Amphinomidae). PMID:29293976
Comparative genomic analysis of Genlisea (corkscrew plants-Lentibulariaceae) chloroplast genomes reveals an increasing loss of the ndh genes. PMID:29293597
Whole genome sequencing of the monomorphic pathogen Mycobacterium bovis reveals local differentiation of cattle clinical isolates. PMID:29291727
Morphological and molecular characterization of a novel myxosporean parasite Myxobolus bejeranoi n. sp. (Cnidaria: Myxosporea) from hybrid tilapia in Israel. PMID:29285565
Hepatitis B virus (HBV) X gene mutations and their association with liver disease progression in HBV-infected patients. PMID:29285238
Viral discovery and diversity in trypanosomatid protozoa with a focus on relatives of the human parasite Leishmania. PMID:29284754
Diversification rates, host plant shifts and an updated molecular phylogeny of Andean Eois moths (Lepidoptera: Geometridae). PMID:29281664
The evolutionary characteristics and structural biology of Gallus toll-like receptor 21. PMID:29280512
Multiple origins of interdependent endosymbiotic complexes in a genus of cicadas. PMID:29279407
A phylogenomic analysis of lichen-feeding tiger moths uncovers evolutionary origins of host chemical sequestration. PMID:29274497
Genetic Competence Drives Genome Diversity in Bacillus subtilis. PMID:29272410
Comparative Genomics of Bacteriophage of the Genus Seuratvirus. PMID:29272407
Nanopore DNA Sequencing and Genome Assembly on the International Space Station. PMID:29269933
Negative correlation between rates of molecular evolution and flowering cycles in temperate woody bamboos revealed by plastid phylogenomics. PMID:29268709
To be serrate or pinnate: diverse leaf forms of yarrows (Achillea) are linked to differential expression patterns of NAM genes. PMID:29267935
Characterization of Leptospira isolates from humans and the environment in Uruguay. PMID:29267587
Distinct fitness costs associated with the knockdown of RNAi pathway genes in western corn rootworm adults. PMID:29267401
Ontogeny of the B- and T-cell response in a primary Zika virus infection of a dengue-naïve individual during the 2016 outbreak in Miami, FL. PMID:29267278
Molecular Evolution of the VP1 Gene in Human Norovirus GII.4 Variants in 1974-2015. PMID:29259596
Responses of Microbial Community Composition to Temperature Gradient and Carbon Steel Corrosion in Production Water of Petroleum Reservoir. PMID:29259586
Dengue viruses in Papua New Guinea: evidence of endemicity and phylogenetic variation, including the evolution of new genetic lineages. PMID:29259329
Inferring the evolution of the major histocompatibility complex of wild pigs and peccaries using hybridisation DNA capture-based sequencing. PMID:29256177
Genetic variation and factors affecting the genetic structure of the lichenicolous fungus Heterocephalacria bachmannii (Filobasidiales, Basidiomycota). PMID:29253026
Divergent HIV-1 strains (CRF92_C2U and CRF93_cpx) co-circulating in the Democratic Republic of the Congo: Phylogenetic insights on the early evolutionary history of subtype C. PMID:29250430
Distribution of Abundant and Active Planktonic Ciliates in Coastal and Slope Waters Off New England. PMID:29250036
A new species of Xenoturbella from the western Pacific Ocean and the evolution of Xenoturbella. PMID:29249199
Diversification of defensins and NLRs in Arabidopsis species by different evolutionary mechanisms. PMID:29246101
Online Bayesian Phylogenetic Inference: Theoretical Foundations via Sequential Monte Carlo. PMID:29244177
Transmissibility of intra-host hepatitis C virus variants. PMID:29244001
Expression of six3 and otx in Solenogastres (Mollusca) supports an ancestral role in bilaterian anterior-posterior axis patterning. PMID:29243871
Novel ITS1 Fungal Primers for Characterization of the Mycobiome. PMID:29242834
IMA Genome-F 8: Draft genome of Cercospora zeina, Fusarium pininemorale, Hawksworthiomyces lignivorus, Huntiella decipiens and Ophiostoma ips. PMID:29242781
Emerging citrus diseases in Europe caused by species of Diaporthe. PMID:29242778
A new family and genus in Dothideales for Aureobasidium-like species isolated from house dust. PMID:29242777
Calonectria species isolated from Eucalyptus plantations and nurseries in South China. PMID:29242775
Multigene phylogeny of Endogonales, an early diverging lineage of fungi associated with plants. PMID:29242774
Multiple new cryptic pathogenic Phytophthora species from Fagaceae forests in Austria, Italy and Portugal. PMID:29242773
Regulation of hyperoxia-induced social behaviour in Pristionchus pacificus nematodes requires a novel cilia-mediated environmental input. PMID:29242625
Complete Genome Sequence of Roe Deer Picobirnavirus Strain PBV/roe_deer/SLO/D38-14/2014. PMID:29242222
Detection of novel syntrophic acetate-oxidizing bacteria from biogas processes by continuous acetate enrichment approaches. PMID:29239113
New specific primers for amplification of the Internal Transcribed Spacer region in Clitellata (Annelida). PMID:29238565
Colorful seashells: Identification of haem pathway genes associated with the synthesis of porphyrin shell color in marine snails. PMID:29238562
Historical Biogeography of endemic seed plant genera in the Caribbean: Did GAARlandia play a role? PMID:29238545
Insights into the evolution, biogeography and natural history of the acorn ants, genus Temnothorax Mayr (hymenoptera: Formicidae). PMID:29237395
Genome-wide analysis of Atlantic salmon (Salmo salar) mucin genes and their role as biomarkers. PMID:29236729
Convergent evolution of bilaterian nerve cords. PMID:29236686
Post genomics era for orchid research. PMID:29234904
The SlZRT1 Gene Encodes a Plasma Membrane-Located ZIP (Zrt-, Irt-Like Protein) Transporter in the Ectomycorrhizal Fungus Suillus luteus. PMID:29234311
Enclaves of genetic diversity resisted Inca impacts on population history. PMID:29234095
Dynamic secretome of Trichomonas vaginalis: Case study of β-amylases. PMID:29233912
More than the eyes can see: The worrying scenario of canine leishmaniasis in the Brazilian side of the triple border. PMID:29232388
Evolutionary transitions between beneficial and phytopathogenic Rhodococcus challenge disease management. PMID:29231813
Functional and evolutionary analysis of Korean bob-tailed native dog using whole-genome sequencing data. PMID:29230066
Using bioinformatic and phylogenetic approaches to classify transposable elements and understand their complex evolutionary histories. PMID:29225705
Bacterial Succession on Sinking Particles in the Ocean's Interior. PMID:29225592
Imprecision and DNA Break Repair Biased towards Incompatible End Joining in Leukemia. PMID:29222170
A New Niche for Anoxygenic Phototrophs as Endoliths. PMID:29222097
BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics. PMID:29220515
A Molecular Portrait of De Novo Genes in Yeasts. PMID:29220506
Comparative analyses of plastid genomes from fourteen Cornales species: inferences for phylogenetic relationships and genome evolution. PMID:29216844
Characterization of sulfhydryl oxidase from Aspergillus tubingensis. PMID:29216817
Comprehensive Genome-Wide Classification Reveals That Many Plant-Specific Transcription Factors Evolved in Streptophyte Algae. PMID:29216360
Evolution of cytokinesis-related protein localization during the emergence of multicellularity in volvocine green algae. PMID:29212441
A continuous morphological approach to study the evolution of pollen in a phylogenetic context: An example with the order Myrtales. PMID:29211730
Trypanosoma janseni n. sp. (Trypanosomatida: Trypanosomatidae) isolated from Didelphis aurita (Mammalia: Didelphidae) in the Atlantic Rainforest of Rio de Janeiro, Brazil: integrative taxonomy and phylogeography within the Trypanosoma cruzi clade. PMID:29211107
Chemosensory Gene Families in Ectropis grisescens and Candidates for Detection of Type-II Sex Pheromones. PMID:29209233
Genome Sequences Reveal Cryptic Speciation in the Human Pathogen Histoplasma capsulatum. PMID:29208741
PvdO is required for the oxidation of dihydropyoverdine as the last step of fluorophore formation in Pseudomonas fluorescens. PMID:29208656
Mitochondrial genomic variation and phylogenetic relationships of three groups in the genus Scaphoideus (Hemiptera: Cicadellidae: Deltocephalinae). PMID:29203807
Consideration of non-canonical splice sites improves gene prediction on the Arabidopsis thaliana Niederzenz-1 genome sequence. PMID:29202864
Species-specific genes under selection characterize the co-evolution of slavemaker and host lifestyles. PMID:29202686
The presence of genes encoding enzymes that digest carbohydrates in coral genomes and analysis of their activities. PMID:29201566
Contrasting patterns of evolutionary constraint and novelty revealed by comparative sperm proteomic analysis in Lepidoptera. PMID:29197336
Evolution of intron-poor clades and expression patterns of the glycosyltransferase family 47. PMID:29196940
De novo transcriptome assembly of Zanthoxylum bungeanum using Illumina sequencing for evolutionary analysis and simple sequence repeat marker development. PMID:29196697
Evolution and Diversity of Inherited Spiroplasma Symbionts in Myrmica Ants. PMID:29196290
Light from dark: A relictual troglobite reveals a broader ancestral distribution for kimulid harvestmen (Opiliones: Laniatores: Kimulidae) in South America. PMID:29190302
Elevational distribution and morphological attributes of the entomopathogenic fungi from forests of the Qinling Mountains in China. PMID:29189901
Geographic variation in hybridization across a reinforcement contact zone of chorus frogs (Pseudacris). PMID:29187984
Genome comparisons indicate recent transfer of wRi-like Wolbachia between sister species Drosophila suzukii and D. subpulchrella. PMID:29187976
Evolutionary history of enigmatic bears in the Tibetan Plateau-Himalaya region and the identity of the yeti. PMID:29187630
Large-scale phylogenomic analysis resolves a backbone phylogeny in ferns. PMID:29186447
Comparative Genomics of Pathogenic and Nonpathogenic Beetle-Vectored Fungi in the Genus Geosmithia. PMID:29186370
Molecular and microscopic characterization of a novel Eastern grey kangaroopox virus genome directly from a clinical sample. PMID:29184134
Speciation Generates Mosaic Genomes in Kangaroos. PMID:29182740
Pseudotrichonympha leei, Pseudotrichonympha lifesoni, and Pseudotrichonympha pearti, new species of parabasalian flagellates and the description of a rotating subcellular structure. PMID:29180788
Evolutionary recruitment of flexible Esrp-dependent splicing programs into diverse embryonic morphogenetic processes. PMID:29180615
Phylogenomics of Cas4 family nucleases. PMID:29179671
Phylogenetics of subtribe Orchidinae s.l. (Orchidaceae; Orchidoideae) based on seven markers (plastid matK, psaB, rbcL, trnL-F, trnH-psba, and nuclear nrITS, Xdh): implications for generic delimitation. PMID:29178835
Phylogenetic relationships of cone snails endemic to Cabo Verde based on mitochondrial genomes. PMID:29178825
Phylogenetic Profiling of Mitochondrial Proteins and Integration Analysis of Bacterial Transcription Units Suggest Evolution of F1Fo ATP Synthase from Multiple Modules. PMID:29177973
Pleistocene climatic oscillations in Neotropical open areas: Refuge isolation in the rodent Oxymycterus nasutus endemic to grasslands. PMID:29176839
Identification and analysis of seven effector protein families with different adaptive and evolutionary histories in plant-associated members of the Xanthomonadaceae. PMID:29170530
A Bioinformatic Pipeline for Monitoring of the Mutational Stability of Viral Drug Targets with Deep-Sequencing Technology. PMID:29168754
Updated mtCOI reference dataset for the Bemisia tabaci species complex. PMID:29167738
Long-Read Sequencing of Human Cytomegalovirus Transcriptome Reveals RNA Isoforms Carrying Distinct Coding Potentials. PMID:29167532
A compendium of transcription factor and Transcriptionally active protein coding gene families in cowpea (Vigna unguiculata L.). PMID:29166879
HIV Envelope Glycoform Heterogeneity and Localized Diversity Govern the Initiation and Maturation of a V2 Apex Broadly Neutralizing Antibody Lineage. PMID:29166592
High-Throughput Identification of Antimicrobial Peptides from Amphibious Mudskippers. PMID:29165344
Integral Phylogenomic Approach over Ilex L. Species from Southern South America. PMID:29165335
Antibiotics reduce genetic diversity of core species in the honeybee gut microbiome. PMID:29164717
Comparative Pan-Genome Analysis of Piscirickettsia salmonis Reveals Genomic Divergences within Genogroups. PMID:29164068
Plastome Rearrangements in the "Adenocalymma-Neojobertia" Clade (Bignonieae, Bignoniaceae) and Its Phylogenetic Implications. PMID:29163600
Evolutionary Analysis of HIV-1 Pol Proteins Reveals Representative Residues for Viral Subtype Differentiation. PMID:29163435
Sugar Metabolism of the First Thermophilic Planctomycete Thermogutta terrifontis: Comparative Genomic and Transcriptomic Approaches. PMID:29163426
Arbuscular Mycorrhizal Fungal Community Composition in Carludovica palmata, Costus scaber and Euterpe precatoria from Weathered Oil Ponds in the Ecuadorian Amazon. PMID:29163421
Carrageenan catabolism is encoded by a complex regulon in marine heterotrophic bacteria. PMID:29162826
Chloroplast PetD protein: evidence for SRP/Alb3-dependent insertion into the thylakoid membrane. PMID:29162052
Fusarium graminearum: pathogen or endophyte of North American grasses? PMID:29160900
Fungal Endophyte Communities in Begonia Species from the Brazilian Atlantic Rainforest. PMID:29159690
Phylogeny of xerophilic aspergilli (subgenus Aspergillus) and taxonomic revision of section Restricti. PMID:29158611
Multidrug resistance-associated protein 4 is a bile transporter of Clonorchis sinensis simulated by in silico docking. PMID:29157307
Diversity of dsDNA Viruses in a South African Hot Spring Assessed by Metagenomics and Microscopy. PMID:29156552
A phylogenomic analysis of Marek's disease virus reveals independent paths to virulence in Eurasia and North America. PMID:29151863
Study in Agaricus subgenus Minores and allied clades reveals a new American subgenus and contrasting phylogenetic patterns in Europe and Greater Mekong Subregion. PMID:29151632
Phylogenetic relationships of eight new Dacrymycetes collected from New Zealand. PMID:29151631
Six new Phytophthora species from ITS Clade 7a including two sexually functional heterothallic hybrid species detected in natural ecosystems in Taiwan. PMID:29151629
Riding with the ants. PMID:29151628
Rapid neo-sex chromosome evolution and incipient speciation in a major forest pest. PMID:29150608
The Tape Measure Protein Is Involved in the Heat Stability of Lactococcus lactis Phages. PMID:29150509
The prototypical proton-coupled oligopeptide transporter YdgR from Escherichia coli facilitates chloramphenicol uptake into bacterial cells. PMID:29150447
Drivers of genetic diversity in secondary metabolic gene clusters within a fungal species. PMID:29149178
Constraints on lateral gene transfer in promoting fimbrial usher protein diversity and function. PMID:29142104
The Fungicolous Ascomycetes Genus Hypomyces in Korea. PMID:29138627
Diversity, Phylogeny, and Host-Specialization of Hyaloperonospora Species in Korea. PMID:29138618
Bipolaris marantae sp. nov., A Novel Helminthosporoid Species Causing Foliage Blight of the Garden Plant Maranta leuconeura in Brazil. PMID:29138616
The Complete Mitogenome of the Wood-Feeding Cockroach Cryptocercus meridianus (Blattodea: Cryptocercidae) and Its Phylogenetic Relationship among Cockroach Families. PMID:29137151
Metabolic shift at the class level sheds light on adaptation of methanogens to oxidative environments. PMID:29135970
Aligning evidence: concerns regarding multiple sequence alignments in estimating the phylogeny of the Nudibranchia suborder Doridina. PMID:29134101
Hidden in the urban parks of New York City: Themira lohmanus, a new species of Sepsidae described based on morphology, DNA sequences, mating behavior, and reproductive isolation (Sepsidae, Diptera). PMID:29134024
A gene-tree test of the traditional taxonomy of American deer: the importance of voucher specimens, geographic data, and dense sampling. PMID:29134018
A genome-wide phylogeny of jumping spiders (Araneae, Salticidae), using anchored hybrid enrichment. PMID:29134008
Whole genomic analysis of two potential recombinant strains within Human mastadenovirus species C previously found in Beijing, China. PMID:29133946
Resurrecting ancestral genes in bacteria to interpret ancient biosignatures. PMID:29133450
Rapid evolutionary divergence of diploid and allotetraploid Gossypium mitochondrial genomes. PMID:29132310
A model-based clustering method to detect infectious disease transmission outbreaks from sequence variation. PMID:29131825
Iodide Binding in Sodium-Coupled Cotransporters. PMID:29131623
The Vici syndrome protein EPG5 regulates intracellular nucleic acid trafficking linking autophagy to innate and adaptive immunity. PMID:29130391
Idiosyncratic Genome Degradation in a Bacterial Endosymbiont of Periodical Cicadas. PMID:29129532
Current source density mapping of antennal sensory selectivity reveals conserved olfactory systems between tephritids and Drosophila. PMID:29127313
Evolutionary Epigenomics of Retrotransposon-Mediated Methylation Spreading in Rice. PMID:29126199
Comparative Genome Analysis Reveals Adaptation to the Ectophytic Lifestyle of Sooty Blotch and Flyspeck Fungi. PMID:29126189
Genomic and epidemiological characterisation of a dengue virus outbreak among blood donors in Brazil. PMID:29123142
Genomic Environment Impacts Color Vision Evolution in a Family with Visually Based Sexual Selection. PMID:29121209
Identification of a novel HERV-K(HML10): comprehensive characterization and comparative analysis in non-human primates provide insights about HML10 proviruses structure and diffusion. PMID:29118853
Development of Chloroplast Genomic Resources for Oryza Species Discrimination. PMID:29118779
Complete mitochondrial genomes from two species of Chinese freshwater crabs of the genus Sinopotamon recovered using next-generation sequencing reveal a novel gene order (Brachyura, Potamidae). PMID:29118611
Revision of torrent mites (Parasitengona, Torrenticolidae, Torrenticola) of the United States and Canada: 90 descriptions, molecular phylogenetics, and a key to species. PMID:29118596
Reinstatement of Eschatoporiini Blaisdell, 1906, a unique tribe of blind cavernicolous Tenebrionidae from California, with a new species from Napa County (Coleoptera, Tenebrionidae, Lagriinae). PMID:29118594
Influenza virus segment 5 (+)RNA - secondary structure and new targets for antiviral strategies. PMID:29118447
Characterization of the complete mitochondrial genome of Marshallagia marshalli and phylogenetic implications for the superfamily Trichostrongyloidea. PMID:29116454
Diversity of Middle East respiratory syndrome coronaviruses in 109 dromedary camels based on full-genome sequencing, Abu Dhabi, United Arab Emirates. PMID:29116217
A new species of Ophryotrocha (Annelida, Eunicida, Dorvilleidae) from hydrothermal vents on the Southwest Indian Ridge. PMID:29114161
Mechanisms of Surface Antigenic Variation in the Human Pathogenic Fungus Pneumocystis jirovecii. PMID:29114024
fusionDB: assessing microbial diversity and environmental preferences via functional similarity networks. PMID:29112720
The unexpected depths of genome-skimming data: A case study examining Goodeniaceae floral symmetry genes. PMID:29109919
Evolutionary Conserved Cysteines Function as cis-Acting Regulators of Arabidopsis PIN-FORMED 2 Distribution. PMID:29109378
Increased Affinity for RNA Targets Evolved Early in Animal and Plant Dicer Lineages through Different Structural Mechanisms. PMID:29106606
The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces. PMID:29106550
Popmarker: Identifying Phylogenetic Markers at the Population Level. PMID:29104426
Ammonia-oxidising archaea living at low pH: Insights from comparative genomics. PMID:29098760
The complete mitochondrial genome of parasitic nematode Camallanus cotti: extreme discontinuity in the rate of mitogenomic architecture evolution within the Chromadorea class. PMID:29096600
The complete chloroplast genome sequence of the CAM epiphyte Spanish moss (Tillandsia usneoides, Bromeliaceae) and its comparative analysis. PMID:29095905
Plastid and mitochondrial genomes of Coccophora langsdorfii (Fucales, Phaeophyceae) and the utility of molecular markers. PMID:29095864
TGTT and AACA: two transcriptionally active LTR retrotransposon subfamilies with a specific LTR structure and horizontal transfer in four Rosaceae species. PMID:29093758
Analysis of the CRISPR-Cas system in bacteriophages active on epidemic strains of Vibrio cholerae in Bangladesh. PMID:29093571
Comprehensive analysis of correlations among codon usage bias, gene expression, and substitution rate in Arachis duranensis and Arachis ipaënsis orthologs. PMID:29093502
Do ampharetids take sedimented steps between vents and seeps? Phylogeny and habitat-use of Ampharetidae (Annelida, Terebelliformia) in chemosynthesis-based ecosystems. PMID:29089027
The Complete Chloroplast Genome Sequences of the Medicinal Plant Forsythia suspensa (Oleaceae). PMID:29088105
The comparison of molecular and morphology-based phylogenies of trichaline net-winged beetles (Coleoptera: Lycidae: Metriorrhynchini) with description of a new subgenus. PMID:29085759
Phylogenomic analysis of the Chilean clade of Liolaemus lizards (Squamata: Liolaemidae) based on sequence capture data. PMID:29085750
Hydrogen Bond Variations of Influenza A Viruses During Adaptation in Human. PMID:29085020
New method for the identification of arbuscular mycorrhizal fungi by proteomic-based biotyping of spores using MALDI-TOF-MS. PMID:29084976
Complete Genome of Achalarus lyciades, The First Representative of the Eudaminae Subfamily of Skippers. PMID:29081692
Development of functional ectopic compound eyes in scarabaeid beetles by knockdown of orthodenticle. PMID:29078401
Invasive legumes can associate with many mutualists of native legumes, but usually do not. PMID:29075475
The Colletotrichum acutatum Species Complex as a Model System to Study Evolution and Host Specialization in Plant Pathogens. PMID:29075253
Keeping it complicated: Mitochondrial genome plasticity across diplonemids. PMID:29074957
Resveratrol: A novel type of topoisomerase II inhibitor. PMID:29074616
Spatial phylogenetics of the native California flora. PMID:29073895
Prey preference follows phylogeny: evolutionary dietary patterns within the marine gastropod group Cladobranchia (Gastropoda: Heterobranchia: Nudibranchia). PMID:29073890
Highly divergent 16S rRNA sequences in ribosomal operons of Scytonema hyalinum (Cyanobacteria). PMID:29073157
Competitive network determines the direction of the diversity-function relationship. PMID:29073072
Flavan-3-ols Are an Effective Chemical Defense against Rust Infection. PMID:29070515
The Conserved ATM Kinase RAG2-S365 Phosphorylation Site Limits Cleavage Events in Individual Cells Independent of Any Repair Defect. PMID:29069605
Multiple RNA structures affect translation initiation and UGA redefinition efficiency during synthesis of selenoprotein P. PMID:29069514
The Diversification of Zika Virus: Are There Two Distinct Lineages? PMID:29069354
Legionella Becoming a Mutualist: Adaptive Processes Shaping the Genome of Symbiont in the Louse Polyplax serrata. PMID:29069349
Functional reconstruction of a eukaryotic-like E1/E2/(RING) E3 ubiquitylation cascade from an uncultured archaeon. PMID:29066714
The Transcriptomes of Xiphinema index and Longidorus elongatus Suggest Independent Acquisition of Some Plant Parasitism Genes by Horizontal Gene Transfer in Early-Branching Nematodes. PMID:29065523
A deep transcriptomic resource for the copepod crustacean Labidocera madurae: A potential indicator species for assessing near shore ecosystem health. PMID:29065152
Giardiasis as a neglected disease in Brazil: Systematic review of 20 years of publications. PMID:29065126
A structural explanation for the low effectiveness of the seasonal influenza H3N2 vaccine. PMID:29059230
An Arabidopsis introgression zone studied at high spatio-temporal resolution: interglacial and multiple genetic contact exemplified using whole nuclear and plastid genomes. PMID:29058582
Pathogenicity of Human ST23 Streptococcus agalactiae to Fish and Genomic Comparison of Pathogenic and Non-pathogenic Isolates. PMID:29056932
The transcriptome, extracellular proteome and active secretome of agroinfiltrated Nicotiana benthamiana uncover a large, diverse protease repertoire. PMID:29055088
Heterogeneous Patterns of Genetic Diversity and Differentiation in European and Siberian Chiffchaff (Phylloscopus collybita abietinus/P. tristis). PMID:29054864
Diversity and Phylogenetic Analyses of Bacterial Symbionts in Three Whitefly Species from Southeast Europe. PMID:29053633
Genome-Guided Phylo-Transcriptomic Methods and the Nuclear Phylogentic Tree of the Paniceae Grasses. PMID:29051622
Large-scale genomic analyses reveal the population structure and evolutionary trends of Streptococcus agalactiae strains in Brazilian fish farms. PMID:29051505
Decrypting the Polyporus dictyopus complex: Recovery of Atroporus Ryvarden and segregation of Neodictyopus gen. nov. (Polyporales, Basidiomyocta). PMID:29049417
Impact of annotation error in α-globin genes on molecular diagnosis. PMID:29049312
Emergence and loss of spliceosomal twin introns. PMID:29046814
Genome of Ca. Pandoraea novymonadis, an Endosymbiotic Bacterium of the Trypanosomatid Novymonas esmeraldas. PMID:29046673
Nanopore Long-Read Guided Complete Genome Assembly of Hydrogenophaga intermedia, and Genomic Insights into 4-Aminobenzenesulfonate, p-Aminobenzoic Acid and Hydrogen Metabolism in the Genus Hydrogenophaga. PMID:29046667
A New Perspective on Polyploid Fragaria (Strawberry) Genome Composition Based on Large-Scale, Multi-Locus Phylogenetic Analysis. PMID:29045639
Multigene phylogeny of the scyphozoan jellyfish family Pelagiidae reveals that the common U.S. Atlantic sea nettle comprises two distinct species (Chrysaora quinquecirrha and C. chesapeakei). PMID:29043109
Structural basis for regulation of the nucleo-cytoplasmic distribution of Bag6 by TRC35. PMID:29042515
Analysis of the genome of the New Zealand giant collembolan (Holacanthella duospinosa) sheds light on hexapod evolution. PMID:29041914
Systematic classification of the His-Me finger superfamily. PMID:29040665
DNA Data Bank of Japan: 30th anniversary. PMID:29040613
Complete mitochondrial genome sequences of the northern spotted owl (Strix occidentalis caurina) and the barred owl (Strix varia; Aves: Strigiformes: Strigidae) confirm the presence of a duplicated control region. PMID:29038757
Transmembrane Segment XI of the Na+/H+ Antiporter of S. pombe is a Critical Part of the Ion Translocation Pore. PMID:29038548
Frequency-dependent selection in vaccine-associated pneumococcal population dynamics. PMID:29038424
Genomic divergence and cohesion in a species of pelagic freshwater bacteria. PMID:29037158
Genetic Evidence for Sexuality in Cochliopodium (Amoebozoa). PMID:29036297
Phylotyper: in silico predictor of gene subtypes. PMID:29036291
Comparative Genomics of Apomictic Root-Knot Nematodes: Hybridization, Ploidy, and Dynamic Genome Change. PMID:29036290
Strategies for Partitioning Clock Models in Phylogenomic Dating: Application to the Angiosperm Evolutionary Timescale. PMID:29036288
STRIDE: Species Tree Root Inference from Gene Duplication Events. PMID:29029342
Evolution and Spatiotemporal Dynamics of Enterovirus A71 Subgenogroups in Vietnam. PMID:29029128
Polymorphism of antibiotic-inactivating enzyme driven by ecology expands the environmental resistome. PMID:29028006
Unique genome organization of non-mammalian papillomaviruses provides insights into the evolution of viral early proteins. PMID:29026649
Genomic divergence within non-photosynthetic cyanobacterial endosymbionts in rhopalodiacean diatoms. PMID:29026213
Chemosensing of honeybee parasite, Varroa destructor: Transcriptomic analysis. PMID:29026097
Positive and relaxed selection associated with flight evolution and loss in insect transcriptomes. PMID:29020740
A conserved fungal glycosyltransferase facilitates pathogenesis of plants by enabling hyphal growth on solid surfaces. PMID:29020037
Nucleosome-Chd1 structure and implications for chromatin remodelling. PMID:29019976
Independent evolution of tetraloop in enterovirus oriL replicative element and its putative binding partners in virus protein 3C. PMID:29018627
Cryptic biodiversity and phylogeographic patterns of Seychellois Ligia isopods. PMID:29018626
Distinct Subfamilies of Odorant Binding Proteins in Locust (Orthoptera, Acrididae): Molecular Evolution, Structural Variation, and Sensilla-Specific Expression. PMID:29018357
Multiple Geographical Origins of Environmental Sex Determination enhanced the diversification of Darwin's Favourite Orchids. PMID:29018291
The chromosomal organization of horizontal gene transfer in bacteria. PMID:29018197
Cardiovascular flukes (Trematoda: Spirorchiidae) in Caretta caretta Linnaeus, 1758 from the Mediterranean Sea. PMID:29017541
Sequencing of the complete mitochondrial genome of a fish-parasitic flatworm Paratetraonchoides inermis (Platyhelminthes: Monogenea): tRNA gene arrangement reshuffling and implications for phylogeny. PMID:29017532
Broad Phylogenetic Occurrence of the Oxygen-Binding Hemerythrins in Bilaterians. PMID:29016798
A high-quality genome assembly of quinoa provides insights into the molecular basis of salt bladder-based salinity tolerance and the exceptional nutritional value. PMID:28994416
Ctenophore relationships and their placement as the sister group to all other animals. PMID:28993654
Molecular Characterization of Carbapenemase-Producing Pseudomonas aeruginosa of Czech Origin and Evidence for Clonal Spread of Extensively Resistant Sequence Type 357 Expressing IMP-7 Metallo-β-Lactamase. PMID:28993328
Genome-wide characterization of Phytophthora infestans metabolism: a systems biology approach. PMID:28990716
Development of single-copy nuclear intron markers for species-level phylogenetics: Case study with Paullinieae (Sapindaceae). PMID:28989824
Primers for Castilleja and their utility across Orobanchaceae: II. Single-copy nuclear loci. PMID:28989822
Primers for Castilleja and their utility across Orobanchaceae: I. Chloroplast primers. PMID:28989821
Gene Duplication Analysis Reveals No Ancient Whole Genome Duplication but Extensive Small-Scale Duplications during Genome Evolution and Adaptation of Schistosoma mansoni. PMID:28983471
Rapid Increase in Genome Size as a Consequence of Transposable Element Hyperactivity in Wood-White (Leptidea) Butterflies. PMID:28981642
From mammals back to birds: Host-switch of the acanthocephalan Corynosoma australe from pinnipeds to the Magellanic penguin Spheniscus magellanicus. PMID:28981550
A draft genome sequence of the rose black spot fungus Diplocarpon rosae reveals a high degree of genome duplication. PMID:28981525
Novel and divergent genes in the evolution of placental mammals. PMID:28978728
Separation and assembly of deep sequencing data into discrete sub-population genomes. PMID:28977510
Genome-scale detection of positive selection in nine primates predicts human-virus evolutionary conflicts. PMID:28977405
Neofunctionalization of "Juvenile Hormone Esterase Duplication" in Drosophila as an odorant-degrading enzyme towards food odorants. PMID:28974761
Integrated pipeline for inferring the evolutionary history of a gene family embedded in the species tree: a case study on the STIMATE gene family. PMID:28974198
Network of nutrient-sensing pathways and a conserved kinase cascade integrate osmolarity and carbon sensing in Neurospora crassa. PMID:28973881
Ant-infecting Ophiocordyceps genomes reveal a high diversity of potential behavioral manipulation genes and a possible major role for enterotoxins. PMID:28970504
MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization. PMID:28968734
Phylogenetic revision of Camarosporium (Pleosporineae, Dothideomycetes) and allied genera. PMID:28966419
Fangorn Forest (F2): a machine learning approach to classify genes and genera in the family Geminiviridae. PMID:28964254
Characterization of HIV diversity, phylodynamics and drug resistance in Washington, DC. PMID:28961263
Lipid Metabolic Versatility in Malassezia spp. Yeasts Studied through Metabolic Modeling. PMID:28959251
Identification of Human Lineage-Specific Transcriptional Coregulators Enabled by a Glossary of Binding Modules and Tunable Genomic Backgrounds. PMID:28957653
Phenetic Comparison of Prokaryotic Genomes Using k-mers. PMID:28957508
Impact of Recombination on the Base Composition of Bacteria and Archaea. PMID:28957503
Evolutionary Comparisons of the Chloroplast Genome in Lauraceae and Insights into Loss Events in the Magnoliids. PMID:28957463
The Huperzia selago Shoot Tip Transcriptome Sheds New Light on the Evolution of Leaves. PMID:28957460
Completion of Eight Gynostemma BL. (Cucurbitaceae) Chloroplast Genomes: Characterization, Comparative Analysis, and Phylogenetic Relationships. PMID:28955369
A Cretaceous-aged Palaeotropical dispersal established an endemic lineage of Caribbean praying mantises. PMID:28954908
γ-Carboxymuconolactone decarboxylase: a novel cell cycle-related basal body protein in the early branching eukaryote Trichomonas vaginalis. PMID:28950916
Host proteostasis modulates influenza evolution. PMID:28949290
Sylvatic host associations of Triatominae and implications for Chagas disease reservoirs: a review and new host records based on archival specimens. PMID:28948106
The complete chloroplast genome of Cinnamomum camphora and its comparison with related Lauraceae species. PMID:28948105
Utility of DNA barcoding to identify rare endemic vascular plant species in Trinidad. PMID:28944019
Microbial sequence typing in the genomic era. PMID:28943406
Organism-Level Analysis of Vaccination Reveals Networks of Protection across Tissues. PMID:28942919
Bottled aqua incognita: microbiota assembly and dissolved organic matter diversity in natural mineral waters. PMID:28938908
A Human Bi-specific Antibody against Zika Virus with High Therapeutic Potential. PMID:28938115
Interacting amino acid replacements allow poison frogs to evolve epibatidine resistance. PMID:28935799
Mitochondrial genomes of African pangolins and insights into evolutionary patterns and phylogeny of the family Manidae. PMID:28934931
SupeRNAlign: a new tool for flexible superposition of homologous RNA structures and inference of accurate structure-based sequence alignments. PMID:28934487
Investigating Difficult Nodes in the Placental Mammal Tree with Expanded Taxon Sampling and Thousands of Ultraconserved Elements. PMID:28934378
Genetic diversity of Entamoeba: Novel ribosomal lineages from cockroaches. PMID:28934335
Screening of a long-term sample set reveals two Ranavirus lineages in British herpetofauna. PMID:28931029
Berlin Squirrelpox Virus, a New Poxvirus in Red Squirrels, Berlin, Germany. PMID:28930029
Diagnosis of Fatal Human Case of St. Louis Encephalitis Virus Infection by Metagenomic Sequencing, California, 2016. PMID:28930022
Analysis of the Sequences, Structures, and Functions of Product-Releasing Enzyme Domains in Fungal Polyketide Synthases. PMID:28928723
Genetic diversity of Haemonchus contortus isolated from sympatric wild blue sheep (Pseudois nayaur) and sheep in Helan Mountains, China. PMID:28927469
Genome sequencing of the staple food crop white Guinea yam enables the development of a molecular marker for sex determination. PMID:28927400
The evolutionary history of plant T2/S-type ribonucleases. PMID:28924504
Genome-wide identification of the MADS-box transcription factor family in pear (Pyrus bretschneideri) reveals evolution and functional divergence. PMID:28924499
Ancient Occasional Host Switching of Maternally Transmitted Bacterial Symbionts of Chemosynthetic Vesicomyid Clams. PMID:28922872
Six Highly Conserved Targets of RNAi Revealed in HIV-1-Infected Patients from Russia Are Also Present in Many HIV-1 Strains Worldwide. PMID:28918033
Complete fusion of a transposon and herpesvirus created the Teratorn mobile element in medaka fish. PMID:28916771
Down-regulation of NOX2 activity in phagocytes mediated by ATM-kinase dependent phosphorylation. PMID:28916473
Alterations of c-di-GMP turnover proteins modulate semi-constitutive rdar biofilm formation in commensal and uropathogenic Escherichia coli. PMID:28913868
Development of chloroplast genome resources for peanut (Arachis hypogaea L.) and other species of Arachis. PMID:28912544
Integrative and conjugative elements and their hosts: composition, distribution and organization. PMID:28911112
Complete chloroplast genome sequences of two endangered Phoebe (Lauraceae) species. PMID:28905330
Genomic Characterization of Urethritis-Associated Neisseria meningitidis Shows that a Wide Range of N. meningitidis Strains Can Cause Urethritis. PMID:28904187
Evolution of polymer formation within the actin superfamily. PMID:28904122
Evolutionary Origins of Pax6 Control of Crystallin Genes. PMID:28903537
The Chloroplast Genome Sequence of Scutellaria baicalensis Provides Insight into Intraspecific and Interspecific Chloroplast Genome Diversity in Scutellaria. PMID:28902130
Seed and Root Endophytic Fungi in a Range Expanding and a Related Plant Species. PMID:28900420
Alligator wrestling: morphological, molecular, and phylogenetic data on Odhneriotrema incommodum (Leidy, 1856) (Digenea: Clinostomidae) from Alligator mississippiensis Daudin, 1801 in Mississippi, USA. PMID:28894925
Novel arsenic-transforming bacteria and the diversity of their arsenic-related genes and enzymes arising from arsenic-polluted freshwater sediment. PMID:28894204
Acidophilic green algal genome provides insights into adaptation to an acidic environment. PMID:28893987
De novo metatranscriptome assembly and coral gene expression profile of Montipora capitata with growth anomaly. PMID:28893194
Conservation and diversification of small RNA pathways within flatworms. PMID:28893179
Complete Chloroplast Genome of Pinus massoniana (Pinaceae): Gene Rearrangements, Loss of ndh Genes, and Short Inverted Repeats Contraction, Expansion. PMID:28891993
Complete Mitochondrial Genomes of the Cherskii's Sculpin Cottus czerskii and Siberian Taimen Hucho taimen Reveal GenBank Entry Errors: Incorrect Species Identification and Recombinant Mitochondrial Genome. PMID:28890653
Conversion of an inactive xylose isomerase into a functional enzyme by co-expression of GroEL-GroES chaperonins in Saccharomyces cerevisiae. PMID:28888227
Evaluation of single-cell genomics to address evolutionary questions using three SAGs of the choanoflagellate Monosiga brevicollis. PMID:28887541
Evidence-based gene models for structural and functional annotations of the oil palm genome. PMID:28886750
Re-Assembly and Analysis of an Ancient Variola Virus Genome. PMID:28885569
Eye Development in Sepia officinalis Embryo: What the Uncommon Gene Expression Profiles Tell Us about Eye Evolution. PMID:28883798
Adaptive mutations of neuraminidase stalk truncation and deglycosylation confer enhanced pathogenicity of influenza A viruses. PMID:28883554
Characterizing the virome of Ixodes ricinus ticks from northern Europe. PMID:28883464
Computational genome-wide survey of odorant receptors from two solitary bees Dufourea novaeangliae (Hymenoptera: Halictidae) and Habropoda laboriosa (Hymenoptera: Apidae). PMID:28883425
Think globally, act locally: Phylodynamic reconstruction of infectious bronchitis virus (IBV) QX genotype (GI-19 lineage) reveals different population dynamics and spreading patterns when evaluated on different epidemiological scales. PMID:28880958
Characterization of the Functional Variance in MbtH-like Protein Interactions with a Nonribosomal Peptide Synthetase. PMID:28880538
Homeodomain-like DNA binding proteins control the haploid-to-diploid transition in Dictyostelium. PMID:28879231
Characterization of the Copy Number and Variants of Deformed Wing Virus (DWV) in the Pairs of Honey Bee Pupa and Infesting Varroa destructor or Tropilaelaps mercedesae. PMID:28878743
Mitochondrial phylogenomics of Hemiptera reveals adaptive innovations driving the diversification of true bugs. PMID:28878063
Glareosin: a novel sexually dimorphic urinary lipocalin in the bank vole, Myodes glareolus. PMID:28878040
PrePhyloPro: phylogenetic profile-based prediction of whole proteome linkages. PMID:28875072
Deep-level phylogeny of Cicadomorpha inferred from mitochondrial genomes sequenced by NGS. PMID:28874826
An expanded mammal mitogenome dataset from Southeast Asia. PMID:28873965
Electrically conductive pili from pilin genes of phylogenetically diverse microorganisms. PMID:28872631
Cryptosporidium infecting wild cricetid rodents from the subfamilies Arvicolinae and Neotominae. PMID:28870264
KinFin: Software for Taxon-Aware Analysis of Clustered Protein Sequences. PMID:28866640
Growth form evolution and hybridization in Senecio (Asteraceae) from the high equatorial Andes. PMID:28861248
Polyphasic taxonomy of Aspergillus section Aspergillus (formerly Eurotium), and its occurrence in indoor environments and food. PMID:28860671
Complete Chloroplast Genome Sequence of Decaisnea insignis: Genome Organization, Genomic Resources and Comparative Analysis. PMID:28855603
Xanthomonas adaptation to common bean is associated with horizontal transfers of genes encoding TAL effectors. PMID:28854875
The Evolutionary Dynamics of the Odorant Receptor Gene Family in Corbiculate Bees. PMID:28854688
Evolution of the Largest Mammalian Genome. PMID:28854639
The Mitonuclear Dimension of Neanderthal and Denisovan Ancestry in Modern Human Genomes. PMID:28854627
Plastid Phylogenomics Resolve Deep Relationships among Eupolypod II Ferns with Rapid Radiation and Rate Heterogeneity. PMID:28854625
Large-Scale Identification of Wolbachia pipientis Effectors. PMID:28854601
Mitochondrial Genome Assemblies of Elysia timida and Elysia cornigera and the Response of Mitochondrion-Associated Metabolism during Starvation. PMID:28854599
Wallemia peruviensis sp. nov., a new xerophilic fungus from an agricultural setting in South America. PMID:28852858
Partially local three-way alignments and the sequence signatures of mitochondrial genome rearrangements. PMID:28852417
Enrichment of Viral Nucleic Acids by Solution Hybrid Selection with Genus Specific Oligonucleotides. PMID:28852181
The extraordinary variation of the organellar genomes of the Aneura pinguis revealed advanced cryptic speciation of the early land plants. PMID:28852146
Widespread Fosfomycin Resistance in Gram-Negative Bacteria Attributable to the Chromosomal fosA Gene. PMID:28851843
A Key Regulator of the Glycolytic and Gluconeogenic Central Metabolic Pathways in Sinorhizobium meliloti. PMID:28851745
Genome Reduction for Niche Association in Campylobacter Hepaticus, A Cause of Spotty Liver Disease in Poultry. PMID:28848714
Analysis of 62 hybrid assembled human Y chromosomes exposes rapid structural changes and high rates of gene conversion. PMID:28846694
A plant growth-promoting symbiosis between Mycena galopus and Vaccinium corymbosum seedlings. PMID:28842791
Detection and characterization of an H4N6 avian-lineage influenza A virus in pigs in the Midwestern United States. PMID:28841443
Contrasting effects of copper limitation on the photosynthetic apparatus in two strains of the open ocean diatom Thalassiosira oceanica. PMID:28837661
First fossil of an oestroid fly (Diptera: Calyptratae: Oestroidea) and the dating of oestroid divergences. PMID:28832610
The complex evolutionary history and phylogeography of Caridina typus (Crustacea: Decapoda): long-distance dispersal and cryptic allopatric species. PMID:28831142
Identification of a homogenous structural basis for oligomerization by retroviral Rev-like proteins. PMID:28830558
Phylogenomic Resolution of the Phylogeny of Laurasiatherian Mammals: Exploring Phylogenetic Signals within Coding and Noncoding Sequences. PMID:28830116
Molecular identification of methane monooxygenase and quantitative analysis of methanotrophic endosymbionts under laboratory maintenance in Bathymodiolus platifrons from the South China Sea. PMID:28828234
Taxonomic analysis of Paraguayan samples of Homonota fasciata Duméril & Bibron (1836) with the revalidation of Homonota horrida Burmeister (1861) (Reptilia: Squamata: Phyllodactylidae) and the description of a new species. PMID:28828231
Differential evolutionary patterns and expression levels between sex-specific and somatic tissue-specific genes in peanut. PMID:28827710
Host-derived viral transporter protein for nitrogen uptake in infected marine phytoplankton. PMID:28827361
Coevolutionary arms race versus host defense chase in a tropical herbivore-plant system. PMID:28827317
Asexual and sexual morphs of Moesziomyces revisited. PMID:28824844
Asexual-sexual morph connection in the type species of Berkleasmium. PMID:28824842
New endophytic Toxicocladosporium species from cacti in Brazil, and description of Neocladosporium gen. nov. PMID:28824841
Pleiocarpon gen. nov. and a new species of Ilyonectria causing basal rot of Strelitzia reginae in Italy. PMID:28824840
Maullinia braseltonii sp. nov. (Rhizaria, Phytomyxea, Phagomyxida): A Cyst-forming Parasite of the Bull Kelp Durvillaea spp. (Stramenopila, Phaeophyceae, Fucales). PMID:28822911
Structural and developmental expression of Ss-riok-2, an RIO protein kinase encoding gene of Strongyloides stercoralis. PMID:28821723
Influenza A(H3N2) Virus in Swine at Agricultural Fairs and Transmission to Humans, Michigan and Ohio, USA, 2016. PMID:28820376
Reoccurrence of botulinum neurotoxin subtype A3 inducing food-borne botulism, Slovakia, 2015. PMID:28816652
Chlamydomonas reinhardtii LFO1 Is an IsdG Family Heme Oxygenase. PMID:28815214
Green lacewings (Neuroptera: Chrysopidae) are commonly associated with a diversity of rickettsial endosymbionts. PMID:28815055
Evolutionary history of the mariner element galluhop in avian genomes. PMID:28814978
Phylogeny and morphological analyses of Penicillium section Sclerotiora (Fungi) lead to the discovery of five new species. PMID:28811639
Ligand binding modes from low resolution GPCR models and mutagenesis: chicken bitter taste receptor as a test-case. PMID:28811548
Delimiting species of Protaphorura (Collembola: Onychiuridae): integrative evidence based on morphology, DNA sequences and geography. PMID:28811535
Recruitment of CRISPR-Cas systems by Tn7-like transposons. PMID:28811374
Testing Convergent Evolution in Auditory Processing Genes between Echolocating Mammals and the Aye-Aye, a Percussive-Foraging Primate. PMID:28810710
Characterization of the complete chloroplast genome of Arabis stellari and comparisons with related species. PMID:28809950
Function-related replacement of bacterial siderophore pathways. PMID:28809850
Structure of Psb29/Thf1 and its association with the FtsH protease complex involved in photosystem II repair in cyanobacteria. PMID:28808107
Torix group Rickettsia are widespread in Culicoides biting midges (Diptera: Ceratopogonidae), reach high frequency and carry unique genomic features. PMID:28805302
orco Mutagenesis Causes Loss of Antennal Lobe Glomeruli and Impaired Social Behavior in Ants. PMID:28802042
Acrodictys-like wood decay fungi from southern China, with two new families Acrodictyaceae and Junewangiaceae. PMID:28801663
Regulation of the Human Phosphatase PTPN4 by the inter-domain linker connecting the PDZ and the phosphatase domains. PMID:28801650
SMRT Sequencing Revealed Mitogenome Characteristics and Mitogenome-Wide DNA Modification Pattern in Ophiocordyceps sinensis. PMID:28798740
Comprehensive Analysis of Codon Usage Bias in Seven Epichloë Species and Their Peramine-Coding Genes. PMID:28798739
Phylogenetic and Molecular Evolutionary Analysis of Mitophagy Receptors under Hypoxic Conditions. PMID:28798696
Origin and dispersal of early domestic pigs in northern China. PMID:28798357
Reconciling individual and population levels of porcine reproductive and respiratory syndrome virus evolution. PMID:28795353
The Adaptive Evolution Database (TAED): A New Release of a Database of Phylogenetically Indexed Gene Families from Chordates. PMID:28795237
A new species of terrestrial-breeding frog (Amphibia, Craugastoridae, Pristimantis) from high elevations of the Pui Pui Protected Forest in central Peru. PMID:28794672
Complete mitochondrial genomes of Anopheles stephensi and An. dirus and comparative evolutionary mitochondriomics of 50 mosquitoes. PMID:28794438
Comparative Genomics Study of Staphylococcus epidermidis Isolates from Orthopedic-Device-Related Infections Correlated with Patient Outcome. PMID:28794175
Molecular phylogeny and systematics of native North American lumbricid earthworms (Clitellata: Megadrili). PMID:28792948
The importance of conserved amino acids in heme-based globin-coupled diguanylate cyclases. PMID:28792538
Comparative mitogenomic analysis of mirid bugs (Hemiptera: Miridae) and evaluation of potential DNA barcoding markers. PMID:28791201
Chloroplast genomes of Arabidopsis halleri ssp. gemmifera and Arabidopsis lyrata ssp. petraea: Structures and comparative analysis. PMID:28790364
Spider Neurotoxins, Short Linear Cationic Peptides and Venom Protein Classification Improved by an Automated Competition between Exhaustive Profile HMM Classifiers. PMID:28786958
Interspecies-cooperations of abutilon theophrasti with root colonizing microorganisms disarm BOA-OH allelochemicals. PMID:28786736
Symplectin evolved from multiple duplications in bioluminescent squid. PMID:28785521
Characterization of Reconstructed Ancestral Proteins Suggests a Change in Temperature of the Ancient Biosphere. PMID:28783077
Aspergillus Secondary Metabolite Database, a resource to understand the Secondary metabolome of Aspergillus genus. PMID:28779078
Evaluating allopolyploid origins in strawberries (Fragaria) using haplotypes generated from target capture sequencing. PMID:28778145
Occurrence and expression of novel methyl-coenzyme M reductase gene (mcrA) variants in hot spring sediments. PMID:28775334
Assembly and analysis of 100 full MHC haplotypes from the Danish population. PMID:28774965
Increasing airline travel may facilitate co-circulation of multiple dengue virus serotypes in Asia. PMID:28771468
The genome of the cotton bacterial blight pathogen Xanthomonas citri pv. malvacearum strain MSCT1. PMID:28770027
The genus Apodrosus Marshall, 1922 in Cuba (Coleoptera, Curculionidae, Entiminae, Polydrusini). PMID:28769710
Cyphastrea salae, a new species of hard coral from Lord Howe Island, Australia (Scleractinia, Merulinidae). PMID:28769608
Molecular phylogeny of Atractus (Serpentes, Dipsadidae), with emphasis on Ecuadorian species and the description of three new taxa. PMID:28769604
Mapping the clinical outcomes and genetic evolution of Ebola virus in Sierra Leone. PMID:28768904
In silico analyses of conservational, functional and phylogenetic distribution of the LuxI and LuxR homologs in Gram-positive bacteria. PMID:28765541
Comparative analysis of complete plastid genomes from wild soybean (Glycine soja) and nine other Glycine species. PMID:28763486
Two novel poxviruses with unusual genome rearrangements: NY_014 and Murmansk. PMID:28762208
Taxonomic evaluation of selected Ganoderma species and database sequence validation. PMID:28761785
The first complete genomes of Metalmarks and the classification of butterfly families. PMID:28757157
Genomic innovations, transcriptional plasticity and gene loss underlying the evolution and divergence of two highly polyphagous and invasive Helicoverpa pest species. PMID:28756777
Identification and expression analysis of multiple small heat shock protein genes in spruce budworm, Choristoneura fumiferana (L.). PMID:28755305
Dynamic scaffolds for neuronal signaling: in silico analysis of the TANC protein family. PMID:28754924
Morphological and Mitochondrial Genomic Characterization of Eyeworms (Thelazia callipaeda) from Clinical Cases in Central China. PMID:28751889
A Multilocus Sequence Analysis Scheme for Phylogeny of Thioclava Bacteria and Proposal of Two Novel Species. PMID:28751885
Evolution, expression and association of the chemosensory protein genes with the outbreak phase of the two main pest locusts. PMID:28751682
Comparative genomics of the tardigrades Hypsibius dujardini and Ramazzottius varieornatus. PMID:28749982
Characterization of Two Historic Smallpox Specimens from a Czech Museum. PMID:28749451
An improved Plasmodium cynomolgi genome assembly reveals an unexpected methyltransferase gene expansion. PMID:28748222
Comparative Analysis of Four Buckwheat Species Based on Morphology and Complete Chloroplast Genome Sequences. PMID:28747666
Sequencing and de novo assembly of 150 genomes from Denmark as a population reference. PMID:28746312
Molecular diversity of benthic ctenophores (Coeloplanidae). PMID:28743954
Sequencing of the complete mitochondrial genomes of eight freshwater snail species exposes pervasive paraphyly within the Viviparidae family (Caenogastropoda). PMID:28742843
Evolution of the cAMP-dependent protein kinase (PKA) catalytic subunit isoforms. PMID:28742821
Abundance and co-occurrence of extracellular capsules increase environmental breadth: Implications for the emergence of pathogens. PMID:28742161
Biochemical characterization and comparison of aspartylglucosaminidases secreted in venom of the parasitoid wasps Asobara tabida and Leptopilina heterotoma. PMID:28742131
Probiotic Enterococcus mundtii Isolate Protects the Model Insect Tribolium castaneum against Bacillus thuringiensis. PMID:28736550
iTRAQ-based Proteomic Analysis of APPSw,Ind Mice Provides Insights into the Early Changes in Alzheimer's Disease. PMID:28730955
Increased sequencing depth does not increase captured diversity of arbuscular mycorrhizal fungi. PMID:28730541
Diversity and phylogenetic relationships among Bartonella strains from Thai bats. PMID:28727827
Dynamics of genomic innovation in the unicellular ancestry of animals. PMID:28726632
Anaplasma phagocytophilum MSP4 and HSP70 Proteins Are Involved in Interactions with Host Cells during Pathogen Infection. PMID:28725639
The mitochondrial genome of the terrestrial carnivorous plant Utricularia reniformis (Lentibulariaceae): Structure, comparative analysis and evolutionary landmarks. PMID:28723946
First report of Phyllosticta citricarpa and description of two new species, P. paracapitalensis and P. paracitricarpa, from citrus in Europe. PMID:28720979
Functional variants of the melanocortin-4 receptor associated with the Odontoceti and Mysticeti suborders of cetaceans. PMID:28720755
Disguised as a Sulfate Reducer: Growth of the Deltaproteobacterium Desulfurivibrio alkaliphilus by Sulfide Oxidation with Nitrate. PMID:28720728
High diversity of alpha, beta and gamma human papillomaviruses in genital samples from HIV-negative and HIV-positive heterosexual South African men. PMID:28720451
Tick Haller's Organ, a New Paradigm for Arthropod Olfaction: How Ticks Differ from Insects. PMID:28718821
A Transcriptomic Survey of Ion Channel-Based Conotoxins in the Chinese Tubular Cone Snail (Conus betulinus). PMID:28718820
Genome reconstruction in Cynara cardunculus taxa gains access to chromosome-scale DNA variation. PMID:28717205
Evaluation of metagenetic community analysis of planktonic copepods using Illumina MiSeq: Comparisons with morphological classification and metagenetic analysis using Roche 454. PMID:28715458
Unraveling the genetic diversity and phylogeny of Leishmania RNA virus 1 strains of infected Leishmania isolates circulating in French Guiana. PMID:28715422
Phylogenetic Resolution in Juglans Based on Complete Chloroplast Genomes and Nuclear DNA Sequences. PMID:28713409
Spatiotemporal expression patterns of wheat amino acid transporters reveal their putative roles in nitrogen transport and responses to abiotic stress. PMID:28710348
Involvement of aurantiactinomyxon in the life cycle of Thelohanellus testudineus (Cnidaria: Myxosporea) from allogynogenetic gibel carp Carassius auratus gibelio, with morphological, ultrastructural, and molecular analysis. PMID:28707028
Didymellaceae revisited. PMID:28706324
Cryptaphelenchus varicaudatus n. sp. (Rhabditida: Ektaphelenchinae) from Tehran Province, Iran. PMID:28706321
Diversity of Root-knot Nematodes Associated with Tubers of Yam (Dioscorea spp.) Established Using Isozyme Analysis and Mitochondrial DNA-based Identification. PMID:28706318
Genome-Wide Transcriptional Dynamics in the Companion Bacterial Symbionts of the Glassy-Winged Sharpshooter (Cicadellidae: Homalodisca vitripennis) Reveal Differential Gene Expression in Bacteria Occupying Multiple Host Organs. PMID:28705905
The influence of molecular markers and methods on inferring the phylogenetic relationships between the representatives of the Arini (parrots, Psittaciformes), determined on the basis of their complete mitochondrial genomes. PMID:28705202
Specificity in diversity: single origin of a widespread ciliate-bacteria symbiosis. PMID:28701560
Ijuhya vitellina sp. nov., a novel source for chaetoglobosin A, is a destructive parasite of the cereal cyst nematode Heterodera filipjevi. PMID:28700638
Systematic identification and characterization of regulatory elements derived from human endogenous retroviruses. PMID:28700586
Comparative genomic analysis of Acinetobacter strains isolated from murine colonic crypts. PMID:28697749
A fourth Denisovan individual. PMID:28695206
CTCF binding landscape in jawless fish with reference to Hox cluster evolution. PMID:28694486
Evolution, gene expression profiling and 3D modeling of CSLD proteins in cotton. PMID:28693426
Structure and evolution of ENTH and VHS/ENTH-like domains in tepsin. PMID:28691777
Lack of S-RNase-Based Gametophytic Self-Incompatibility in Orchids Suggests That This System Evolved after the Monocot-Eudicot Split. PMID:28690630
Andean Mountain Building Did not Preclude Dispersal of Lowland Epiphytic Orchids in the Neotropics. PMID:28687774
Placeholder factors in ribosome biogenesis: please, pave my way. PMID:28685141
Cryo-EM structure of the protein-conducting ERAD channel Hrd1 in complex with Hrd3. PMID:28682307
Cooperation between Strain-Specific and Broadly Neutralizing Responses Limited Viral Escape and Prolonged the Exposure of the Broadly Neutralizing Epitope. PMID:28679760
Microfluidic-based mini-metagenomics enables discovery of novel microbial lineages from complex environmental samples. PMID:28678007
Candidate regulators of Early Leaf Development in Maize Perturb Hormone Signalling and Secondary Cell Wall Formation When Constitutively Expressed in Rice. PMID:28674432
Modern-day SIV viral diversity generated by extensive recombination and cross-species transmission. PMID:28672035
Origin and evolution of group XI secretory phospholipase A2 from flax (Linum usitatissimum) based on phylogenetic analysis of conserved domains. PMID:28669075
Bacteriocins of Non-aureus Staphylococci Isolated from Bovine Milk. PMID:28667105
WetA bridges cellular and chemical development in Aspergillus flavus. PMID:28658268
Novel insights into mitochondrial gene rearrangement in thrips (Insecta: Thysanoptera) from the grass thrips, Anaphothrips obscurus. PMID:28655921
The complete mitochondrial DNA of three monozoic tapeworms in the Caryophyllidea: a mitogenomic perspective on the phylogeny of eucestodes. PMID:28655342
A mitogenomic timetree for Darwin's enigmatic South American mammal Macrauchenia patachonica. PMID:28654082
Evolution of immune chemoreceptors into sensors of the outside world. PMID:28652375
Development of a realtime RT-PCR assay for the rapid detection of influenza A(H2) viruses. PMID:28652020
Molecular phylogeny reveals food plasticity in the evolution of true ladybird beetles (Coleoptera: Coccinellidae: Coccinellini). PMID:28651535
Mitochondrial haplotypes influence metabolic traits across bovine inter- and intra-species cybrids. PMID:28646188
The calmodulin fused kinase novel gene family is the major system in plants converting Ca2+ signals to protein phosphorylation responses. PMID:28646145
Genome Analysis of Endomicrobium proavitum Suggests Loss and Gain of Relevant Functions during the Evolution of Intracellular Symbionts. PMID:28646115
Comparative transcriptomic analysis of the evolution and development of flower size in Saltugilia (Polemoniaceae). PMID:28645249
Polyphyly of Arundinoideae (Poaceae) and evolution of the twisted geniculate lemma awn. PMID:28645142
Viridiuvalis adhaerens gen. et sp. nov., a novel colony-forming chlorarachniophyte. PMID:28642986
New molecular and morphological data for opecoelid digeneans in two Mediterranean sparid fishes with descriptions of Macvicaria gibsoni n. sp. and M. crassigula (Linton, 1910) (sensu stricto). PMID:28639094
Diversity and Composition of Sulfate-Reducing Microbial Communities Based on Genomic DNA and RNA Transcription in Production Water of High Temperature and Corrosive Oil Reservoir. PMID:28638372
Discovery of a Highly Divergent Coronavirus in the Asian House Shrew from China Illuminates the Origin of the Alphacoronaviruses. PMID:28637760
High-Resolution Metatranscriptomics Reveals the Ecological Dynamics of Mosquito-Associated RNA Viruses in Western Australia. PMID:28637756
Conserved Nonexonic Elements: A Novel Class of Marker for Phylogenomics. PMID:28637293
In Planta Recapitulation of Isoprene Synthase Evolution from Ocimene Synthases. PMID:28637270
OrthoReD: a rapid and accurate orthology prediction tool with low computational requirement. PMID:28633662
SANDPUMA: ensemble predictions of nonribosomal peptide chemistry reveal biosynthetic diversity across Actinobacteria. PMID:28633438
Putative archaeal viruses from the mesopelagic ocean. PMID:28630803
Toll-like receptor pathway evolution in deuterostomes. PMID:28630328
Phylogeny of saprobic microfungi from Southern Europe. PMID:28626275
Dated tribe-wide whole chloroplast genome phylogeny indicates recurrent hybridizations within Triticeae. PMID:28622761
Molecular Detection of Tick-Borne Pathogen Diversities in Ticks from Livestock and Reptiles along the Shores and Adjacent Islands of Lake Victoria and Lake Baringo, Kenya. PMID:28620610
Regulators of plant biomass degradation in ascomycetous fungi. PMID:28616076
Lineage-specific rediploidization is a mechanism to explain time-lags between genome duplication and evolutionary diversification. PMID:28615063
Evolutionary Analysis of MIKCc-Type MADS-Box Genes in Gymnosperms and Angiosperms. PMID:28611810
Genome-wide analysis of gene expression and protein secretion of Babesia canis during virulent infection identifies potential pathogenicity factors. PMID:28611446
Chloroplast Genomic Resource of Paris for Species Discrimination. PMID:28611359
100 million years of multigene family evolution: origin and evolution of the avian MHC class IIB. PMID:28610613
Genotype diversity and molecular evolution of noroviruses: A 30-year (1982-2011) comprehensive study with children from Northern Brazil. PMID:28604828
Lokiarchaea are close relatives of Euryarchaeota, not bridging the gap between prokaryotes and eukaryotes. PMID:28604769
Essential role for GABARAP autophagy proteins in interferon-inducible GTPase-mediated host defense. PMID:28604719
Fungal Sex: The Basidiomycota. PMID:28597825
Transcriptome sequencing of Tessaratoma papillosa antennae to identify and analyze expression patterns of putative olfaction genes. PMID:28596537
CottonFGD: an integrated functional genomics database for cotton. PMID:28595571
A mechanism for a single nucleotide intron shift. PMID:28595329
Accurate and Rapid Differentiation of Acinetobacter baumannii Strains by Raman Spectroscopy: a Comparative Study. PMID:28592553
Rapid and Robust Identification of the Agents of Black-Grain Mycetoma by Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry. PMID:28592546
Declines in plant palatability from polar to tropical latitudes depend on herbivore and plant identity. PMID:28590557
Dissemination of antibiotic resistance genes from antibiotic producers to pathogens. PMID:28589945
Lateral Gene Transfer Dynamics in the Ancient Bacterial Genus Streptomyces. PMID:28588130
Integrative taxonomy by molecular species delimitation: multi-locus data corroborate a new species of Balkan Drusinae micro-endemics. PMID:28587671
Proteases of Dermatophagoides pteronyssinus. PMID:28587273
Palaeogenomes of Eurasian straight-tusked elephants challenge the current view of elephant evolution. PMID:28585920
Candidate genes for migration do not distinguish migratory and non-migratory birds. PMID:28585043
Calculating site-specific evolutionary rates at the amino-acid or codon level yields similar rate estimates. PMID:28584717
Antennal and abdominal transcriptomes reveal chemosensory gene families in the coconut hispine beetle, Brontispa longissima. PMID:28584273
Human Chitotriosidase: Catalytic Domain or Carbohydrate Binding Module, Who's Leading HCHT's Biological Function. PMID:28584264
The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy. PMID:28582575
The evolution and population diversity of human-specific segmental duplications. PMID:28580430
Cross-border spread, lineage displacement and evolutionary rate estimation of rabies virus in Yunnan Province, China. PMID:28578663
Simple adjustment of the sequence weight algorithm remarkably enhances PSI-BLAST performance. PMID:28578660
Comprehensive classification of the PIN domain-like superfamily. PMID:28575517
Molecular diagnosis and characterization of Cryptosporidium spp. in turkeys and chickens in Germany reveals evidence for previously undetected parasite species. PMID:28575116
Comparative chloroplast genomes of eleven Schima (Theaceae) species: Insights into DNA barcoding and phylogeny. PMID:28575004
Enterovirus genotypes among patients with severe acute respiratory illness, influenza-like illness, and asymptomatic individuals in South Africa, 2012-2014. PMID:28574589
Discovery of a new hypotrich ciliate from petroleum contaminated soil. PMID:28570607
Phylogeny and diversity of neotropical monkey lizards (Iguanidae: Polychrus Cuvier, 1817). PMID:28570575
Circulatory zinc transport is controlled by distinct interdomain sites on mammalian albumins. PMID:28567254
Identification of diagnostic peptide regions that distinguish Zika virus from related mosquito-borne Flaviviruses. PMID:28562637
Reprimo tissue-specific expression pattern is conserved between zebrafish and human. PMID:28562620
Demystifying the Capitella capitata complex (Annelida, Capitellidae) diversity by morphological and molecular data along the Brazilian coast. PMID:28562616
The phylogenetic position of dicyemid mesozoans offers insights into spiralian evolution. PMID:28560048
Filamentous ascomycete genomes provide insights into Copia retrotransposon diversity in fungi. PMID:28545447
The impact of migratory flyways on the spread of avian influenza virus in North America. PMID:28545432
Characterization of the whole chloroplast genome of Chikusichloa mutica and its comparison with other rice tribe (Oryzeae) species. PMID:28542519
Deep RNA sequencing reveals the smallest known mitochondrial micro exon in animals: The placozoan cox1 single base pair exon. PMID:28542197
Mitochondrial Retroprocessing Promoted Functional Transfers of rpl5 to the Nucleus in Grasses. PMID:28541477
Proteomic analysis of the phycobiliprotein antenna of the cryptophyte alga Guillardia theta cultured under different light intensities. PMID:28540588
Phylogeography of the Tyrrhenian red deer (Cervus elaphus corsicanus) resolved using ancient DNA of radiocarbon-dated subfossils. PMID:28539631
Zika virus evolution and spread in the Americas. PMID:28538734
Genomic epidemiology reveals multiple introductions of Zika virus into the United States. PMID:28538723
Evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain. PMID:28537263
Phylogeny and biogeography of the genus Stevia (Asteraceae: Eupatorieae): an example of diversification in the Asteraceae in the new world. PMID:28536984
Evolinc: A Tool for the Identification and Evolutionary Comparison of Long Intergenic Non-coding RNAs. PMID:28536600
MqsR/MqsA Toxin/Antitoxin System Regulates Persistence and Biofilm Formation in Pseudomonas putida KT2440. PMID:28536573
A bacterial negative transcription regulator binding on an inverted repeat in the promoter for epothilone biosynthesis. PMID:28535774
Odorant-binding proteins expression patterns in recently diverged species of Anastrepha fruit flies. PMID:28526847
OrthoFiller: utilising data from multiple species to improve the completeness of genome annotations. PMID:28521726
A worldwide phylogeography of the whiteworm lichens Thamnolia reveals three lineages with distinct habitats and evolutionary histories. PMID:28515896
A Diverse Range of Novel RNA Viruses in Geographically Distinct Honey Bee Populations. PMID:28515299
Occurrence of Belonolaimus in Sinaloa, Northwestern Mexico: A New Report on Distribution and Host Range. PMID:28512382
A structure-derived snap-trap mechanism of a multispecific serpin from the dysbiotic human oral microbiome. PMID:28512127
XSuLT: a web server for structural annotation and representation of sequence-structure alignments. PMID:28510698
Bioreactor Scalability: Laboratory-Scale Bioreactor Design Influences Performance, Ecology, and Community Physiology in Expanded Granular Sludge Bed Bioreactors. PMID:28507535
Gene duplication and co-evolution of G1/S transcription factor specificity in fungi are essential for optimizing cell fitness. PMID:28505153
Expansion of the redox-sensitive proteome coincides with the plastid endosymbiosis. PMID:28504699
Biotinidase deficiency: Genotype-biochemical phenotype association in Brazilian patients. PMID:28498829
Expression Analyses of Embryogenesis-Associated Genes during Somatic Embryogenesis of Adiantum capillus-veneris L. In vitro: New Insights into the Evolution of Reproductive Organs in Land Plants. PMID:28496454
A maternal-effect selfish genetic element in Caenorhabditis elegans. PMID:28495877
Rediscovery of the enigmatic fungus-farming ant "Mycetosoritis" asper Mayr (Hymenoptera: Formicidae): Implications for taxonomy, phylogeny, and the evolution of agriculture in ants. PMID:28489860
Unveiling microbial interactions in stratified mat communities from a warm saline shallow pond. PMID:28489281
Diversification of Root Hair Development Genes in Vascular Plants. PMID:28487476
Genome sequencing and description of Oerskovia enterophila VJag, an agar- and cellulose-degrading bacterium. PMID:28484582
Comparative Genomic Analysis of the Class Epsilonproteobacteria and Proposed Reclassification to Epsilonbacteraeota (phyl. nov.). PMID:28484436
Evolution of sex-dependent mtDNA transmission in freshwater mussels (Bivalvia: Unionida). PMID:28484275
Class III Histidine Kinases: a Recently Accessorized Kinase Domain in Putative Modulators of Type IV Pilus-Based Motility. PMID:28484044
Dynamin-like proteins in Trypanosoma brucei: A division of labour between two paralogs? PMID:28481934
Widespread adenine N6-methylation of active genes in fungi. PMID:28481340
Phylogeny and biogeography of the scaleless scale worm Pisione (Sigalionidae, Annelida). PMID:28479990
Genetic variation and geographic differentiation in the marine triclad Bdelloura candida (Platyhelminthes, Tricladida, Maricola), ectocommensal on the American horseshoe crab Limulus polyphemus. PMID:28479611
RNA Targeting by Functionally Orthogonal Type VI-A CRISPR-Cas Enzymes. PMID:28475872
Organelles that illuminate the origins of Trichomonas hydrogenosomes and Giardia mitosomes. PMID:28474007
Three novel Pseudomonas phages isolated from composting provide insights into the evolution and diversity of tailed phages. PMID:28472930
Phenotypic disparity in Iberian short-horned grasshoppers (Acrididae): the role of ecology and phylogeny. PMID:28472922
Comparative genomics of human and non-human Listeria monocytogenes sequence type 121 strains. PMID:28472116
Different evolutionary trajectories of vaccine-controlled and non-controlled avian infectious bronchitis viruses in commercial poultry. PMID:28472110
The diet of a nocturnal pelagic predator, the Bulwer's petrel, across the lunar cycle. PMID:28469170
How do seemingly non-vagile clades accomplish trans-marine dispersal? Trait and dispersal evolution in the landfowl (Aves: Galliformes). PMID:28469029
A fungal transcription factor essential for starch degradation affects integration of carbon and nitrogen metabolism. PMID:28467421
Evolutionary history of LTR-retrotransposons among 20 Drosophila species. PMID:28465726
The Legionella pneumophila GIG operon responds to gold and copper in planktonic and biofilm cultures. PMID:28463986
DNA Barcoding analysis of seafood accuracy in Washington, D.C. restaurants. PMID:28462038
Glacial allopatry vs. postglacial parapatry and peripatry: the case of hedgehogs. PMID:28462018
SpartaABC: a web server to simulate sequences with indel parameters inferred using an approximate Bayesian computation algorithm. PMID:28460062
Evolutionary History of Chemosensory-Related Gene Families across the Arthropoda. PMID:28460028
Human CTP synthase filament structure reveals the active enzyme conformation. PMID:28459447
The phylogenetics of the global population of potato virus Y and its necrogenic recombinants. PMID:28458913
Cleavage modification did not alter blastomere fates during bryozoan evolution. PMID:28454545
Genomic Evidence that Methanotrophic Endosymbionts Likely Provide Deep-Sea Bathymodiolus Mussels with a Sterol Intermediate in Cholesterol Biosynthesis. PMID:28453654
TraitRateProp: a web server for the detection of trait-dependent evolutionary rate shifts in sequence sites. PMID:28453644
Inferring Rates and Length-Distributions of Indels Using Approximate Bayesian Computation. PMID:28453624
Cloning and characterization of the Type I Baeyer-Villiger monooxygenase from Leptospira biflexa. PMID:28452041
Bioactivity in Rhododendron: A Systemic Analysis of Antimicrobial and Cytotoxic Activities and Their Phylogenetic and Phytochemical Origins. PMID:28450876
Cryptic diversity of the subfamily Calaphidinae (Hemiptera: Aphididae) revealed by comprehensive DNA barcoding. PMID:28448639
Insights into intercontinental spread of Zika virus. PMID:28448611
A sister of NANOG regulates genes expressed in pre-implantation human development. PMID:28446706
Arrival and diversification of mabuyine skinks (Squamata: Scincidae) in the Neotropics based on a fossil-calibrated timetree. PMID:28439466
Limited genomic consequences of hybridization between two African clawed frogs, Xenopus gilli and X. laevis (Anura: Pipidae). PMID:28439068
Conservation and divergence of C-terminal domain structure in the retinoblastoma protein family. PMID:28439018
Three New Recorded Species of the Physalacriaceae on Ulleung Island, Korea. PMID:28435348
Five New Records of Soil-Derived Trichoderma in Korea: T. albolutescens, T. asperelloides, T. orientale, T. spirale, and T. tomentosum. PMID:28435347
Programmatic access to bioinformatics tools from EMBL-EBI update: 2017. PMID:28431173
Finding a partner in the ocean: molecular and evolutionary bases of the response to sexual cues in a planktonic diatom. PMID:28429538
Characterisation of three fungal glucuronoyl esterases on glucuronic acid ester model compounds. PMID:28429057
Capture efficiency and trophic adaptations of a specialist and generalist predator: A comparison. PMID:28428866
Seasonal Dynamics of Haptophytes and dsDNA Algal Viruses Suggest Complex Virus-Host Relationship. PMID:28425942
Modern alongside traditional taxonomy-Integrative systematics of the genera Gymnangium Hincks, 1874 and Taxella Allman, 1874 (Hydrozoa, Aglaopheniidae). PMID:28422958
Comparative Genomics and Phylogenomics of East Asian Tulips (Amana, Liliaceae). PMID:28421090
Evolutionary Analysis of the LAFL Genes Involved in the Land Plant Seed Maturation Program. PMID:28421087
β-Carboxysome bioinformatics: identification and evolution of new bacterial microcompartment protein gene classes and core locus constraints. PMID:28419380
Genome sequence of Plasmopara viticola and insight into the pathogenic mechanism. PMID:28417959
Elucidating the diet of the island flying fox (Pteropus hypomelanus) in Peninsular Malaysia through Illumina Next-Generation Sequencing. PMID:28413729
A Global Coexpression Network Approach for Connecting Genes to Specialized Metabolic Pathways in Plants. PMID:28408660
Recessive male sterility in cabbage (Brassica oleracea var. capitata) caused by loss of function of BoCYP704B1 due to the insertion of a LTR-retrotransposon. PMID:28405714
Revisiting the phylogeny of Wolbachia in Collembola. PMID:28405268
A hypervariable mitochondrial protein coding sequence associated with geographical origin in a cosmopolitan bloom-forming alga, Heterosigma akashiwo. PMID:28404821
sRNAs as possible regulators of retrotransposon activity in Cryptococcus gattii VGII. PMID:28403818
Regulation of solvent tolerance in Pseudomonas putida S12 mediated by mobile elements. PMID:28401676
Responses of denitrifying bacterial communities to short-term waterlogging of soils. PMID:28400580
Increased taxon sampling reveals thousands of hidden orthologs in flatworms. PMID:28400424
Prevalence, diversity, and host associations of Bartonella strains in bats from Georgia (Caucasus). PMID:28399125
Short Communication: Lack of Support for Socially Connected HIV-1 Transmission Among Young Adult Black Men Who Have Sex with Men. PMID:28398775
Plastome-Wide Nucleotide Substitution Rates Reveal Accelerated Rates in Papilionoideae and Correlations with Genome Features Across Legume Subfamilies. PMID:28397003
Landscape of histone modifications in a sponge reveals the origin of animal cis-regulatory complexity. PMID:28395144
Genome-to-genome analysis highlights the effect of the human innate and adaptive immune systems on the hepatitis C virus. PMID:28394351
Characterization of a Basidiomycota hydrophobin reveals the structural basis for a high-similarity Class I subdivision. PMID:28393921
Non-native molluscan colonizers on deliberately placed shipwrecks in the Florida Keys, with description of a new species of potentially invasive worm-snail (Gastropoda: Vermetidae). PMID:28392984
Functional and evolutionary characterization of Ohr proteins in eukaryotes reveals many active homologs among pathogenic fungi. PMID:28391181
Novel soil-inhabiting clades fill gaps in the fungal tree of life. PMID:28388929
Extensive diversity of coronaviruses in bats from China. PMID:28384506
Interspecific Plastome Recombination Reflects Ancient Reticulate Evolution in Picea (Pinaceae). PMID:28383641
Hummingbird pollination and the diversification of angiosperms: an old and successful association in Gesneriaceae. PMID:28381621
The crown-of-thorns starfish genome as a guide for biocontrol of this coral reef pest. PMID:28379940
A Locus Encoding Variable Defense Systems against Invading DNA Identified in Streptococcus suis. PMID:28379509
Core Genes Evolve Rapidly in the Long-Term Evolution Experiment with Escherichia coli. PMID:28379360
Comparative Genomics Analysis of a New Exiguobacterium Strain from Salar de Huasco Reveals a Repertoire of Stress-Related Genes and Arsenic Resistance. PMID:28377753
Fossils matter: improved estimates of divergence times in Pinus reveal older diversification. PMID:28376717
Niche partitioning of diverse sulfur-oxidizing bacteria at hydrothermal vents. PMID:28375213
Crystal structure and RNA-binding properties of an Hfq homolog from the deep-branching Aquificae: conservation of the lateral RNA-binding mode. PMID:28375142
Phylogeny and taxonomy of the scab and spot anthracnose fungus Elsinoë (Myriangiales, Dothideomycetes). PMID:28373739
Origin and Evolutionary Alteration of the Mitochondrial Import System in Eukaryotic Lineages. PMID:28369657
The Influence of HIV on the Evolution of Mycobacterium tuberculosis. PMID:28369607
Combination of short-read, long-read, and optical mapping assemblies reveals large-scale tandem repeat arrays with population genetic implications. PMID:28360231
Structural reconstruction of protein ancestry. PMID:28356519
Isolation and characterization of the TaSnRK2.10 gene and its association with agronomic traits in wheat (Triticum aestivum L.). PMID:28355304
Genetic structure and invasion history of the house mouse (Mus musculus domesticus) in Senegal, West Africa: a legacy of colonial and contemporary times. PMID:28353686
The electrically conductive pili of Geobacter species are a recently evolved feature for extracellular electron transfer. PMID:28348867
SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments. PMID:28348851
Repeated local emergence of carbapenem-resistant Acinetobacter baumannii in a single hospital ward. PMID:28348846
Sequence-based analysis of the genus Ruminococcus resolves its phylogeny and reveals strong host association. PMID:28348838
Exploring the genomic diversity of black yeasts and relatives (Chaetothyriales, Ascomycota). PMID:28348446
Structural basis of molecular recognition of helical histone H3 tail by PHD finger domains. PMID:28341809
A Newly Determined Member of the meso-Diaminopimelate Dehydrogenase Family with a Broad Substrate Spectrum. PMID:28341677
Phylogenetics of Lophotrochozoan bHLH Genes and the Evolution of Lineage-Specific Gene Duplicates. PMID:28338988
New real time and conventional RT-PCRs for updated molecular diagnosis of infectious bronchitis virus infection (IBV) in chickens in Egypt associated with frequent co-infections with avian influenza and Newcastle Disease viruses. PMID:28336367
Exploring the evolutionary origin of floral organs of Erycina pusilla, an emerging orchid model system. PMID:28335712
Inhibition of homologous phosphorolytic ribonucleases by citrate may represent an evolutionarily conserved communicative link between RNA degradation and central metabolism. PMID:28334892
Discriminating the reaction types of plant type III polyketide synthases. PMID:28334262
Repeated and diverse losses of corolla bilateral symmetry in the Lamiaceae. PMID:28334152
Centromere Destiny in Dicentric Chromosomes: New Insights from the Evolution of Human Chromosome 2 Ancestral Centromeric Region. PMID:28333343
BuddySuite: Command-Line Toolkits for Manipulating Sequences, Alignments, and Phylogenetic Trees. PMID:28333216
Convergence of Domain Architecture, Structure, and Ligand Affinity in Animal and Plant RNA-Binding Proteins. PMID:28333205
DNA barcoding and species delimitation of Chaitophorinae (Hemiptera, Aphididae). PMID:28331401
Transcription factors of Schizophyllum commune involved in mushroom formation and modulation of vegetative growth. PMID:28331193
Feline Immunodeficiency Virus Evolutionarily Acquires Two Proteins, Vif and Protease, Capable of Antagonizing Feline APOBEC3. PMID:28331087
Discovery and evolution of novel hemerythrin genes in annelid worms. PMID:28330441
High Rates of Transmission of Drug-resistant HIV in Aruba Resulting in Reduced Susceptibility to the WHO Recommended First-line Regimen in Nearly Half of Newly Diagnosed HIV-infected Patients. PMID:28329390
Diversification of the rainfrog Pristimantis ornatissimus in the lowlands and Andean foothills of Ecuador. PMID:28329011
Draft genome of the honey bee ectoparasitic mite, Tropilaelaps mercedesae, is shaped by the parasitic life history. PMID:28327890
The Complete Chloroplast Genome of Wild Rice (Oryza minuta) and Its Comparison to Related Species. PMID:28326093
New evidence shows that Pocillopora 'Pocilloporadamicornis-like' corals in Singapore are actually Pocillopora acuta (Scleractinia: Pocilloporidae). PMID:28325983
IsoSel: Protein Isoform Selector for phylogenetic reconstructions. PMID:28323858
Chance and necessity in the genome evolution of endosymbiotic bacteria of insects. PMID:28323281
High unexpected genetic diversity of a narrow endemic terrestrial mollusc. PMID:28321363
Evolution of group I introns in Porifera: new evidence for intron mobility and implications for DNA barcoding. PMID:28320321
Correlated duplications and losses in the evolution of palmitoylation writer and eraser families. PMID:28320309
Affinity purification of human m-calpain through an intrinsically disordered inhibitor, calpastatin. PMID:28319173
Peptidomic and transcriptomic profiling of four distinct spider venoms. PMID:28306751
Phylogenetic analysis of proteins involved in the stringent response in plant cells. PMID:28303404
Evolutionary Analyses of GRAS Transcription Factors in Angiosperms. PMID:28303145
An analysis of Echinacea chloroplast genomes: Implications for future botanical identification. PMID:28303008
Ancestral and novel roles of Pax family genes in mollusks. PMID:28302062
The assembly of ant-farmed gardens: mutualism specialization following host broadening. PMID:28298344
The Complete Chloroplast Genome Sequences of Six Rehmannia Species. PMID:28294981
PCR Primer Design for 16S rRNAs for Experimental Horizontal Gene Transfer Test in Escherichia coli. PMID:28293553
Chapparvoviruses occur in at least three vertebrate classes and have a broad biogeographic distribution. PMID:28284244
Discovery of an endogenous Deltaretrovirus in the genome of long-fingered bats (Chiroptera: Miniopteridae). PMID:28280099
Mitochondrial genomes of the hoverflies Episyrphus balteatus and Eupeodes corollae (Diptera: Syrphidae), with a phylogenetic analysis of Muscomorpha. PMID:28276531
Molecular and Structural Characterization of the Tegumental 20.6-kDa Protein in Clonorchis sinensis as a Potential Druggable Target. PMID:28273846
Amalga-like virus infecting Antonospora locustae, a microsporidian pathogen of grasshoppers, plus related viruses associated with other arthropods. PMID:28267607
Elucidation of terpenoid metabolism in Scoparia dulcis by RNA-seq analysis. PMID:28266568
Digging deeper: new gene order rearrangements and distinct patterns of codons usage in mitochondrial genomes among shrimps from the Axiidea, Gebiidea and Caridea (Crustacea: Decapoda). PMID:28265498
Continual Antigenic Diversification in China Leads to Global Antigenic Complexity of Avian Influenza H5N1 Viruses. PMID:28262734
Environmental Viral Genomes Shed New Light on Virus-Host Interactions in the Ocean. PMID:28261669
In silico Comparison of 19 Porphyromonas gingivalis Strains in Genomics, Phylogenetics, Phylogenomics and Functional Genomics. PMID:28261563
Three rings for the evolution of plastid shape: a tale of land plant FtsZ. PMID:28258494
Integrative taxonomy of root-knot nematodes reveals multiple independent origins of mitotic parthenogenesis. PMID:28257464
Phylogenetic relationships of the HA and NA genes between vaccine and seasonal influenza A(H3N2) strains in Korea. PMID:28257427
The Expanding Family of Natural Anion Channelrhodopsins Reveals Large Variations in Kinetics, Conductance, and Spectral Sensitivity. PMID:28256618
Computational prediction of immunodominant antigenic regions & potential protective epitopes for dengue vaccination. PMID:28256468
Diversification of Orientia tsutsugamushi genotypes by intragenic recombination and their potential expansion in endemic areas. PMID:28248956
The ancestors of diatoms evolved a unique mitochondrial dehydrogenase to oxidize photorespiratory glycolate. PMID:28247236
Clock-dated phylogeny for 48% of the 700 species of Crotalaria (Fabaceae-Papilionoideae) resolves sections worldwide and implies conserved flower and leaf traits throughout its pantropical range. PMID:28245805
Evolution of the functionally conserved DCC gene in birds. PMID:28240293
Genomic Data Quality Impacts Automated Detection of Lateral Gene Transfer in Fungi. PMID:28235827
Evolutionary history of the sequestrate genus Rossbeevera (Boletaceae) reveals a new genus Turmalinea and highlights the utility of ITS minisatellite-like insertions for molecular identification. PMID:28232764
Exploring fungal mega-diversity: Pseudocercospora from Brazil. PMID:28232763
Novel fungi from an ancient niche: cercosporoid and related sexual morphs on ferns. PMID:28232762
Occurrence of mitochondrial CO1 pseudogenes in Neocalanus plumchrus (Crustacea: Copepoda): Hybridization indicated by recombined nuclear mitochondrial pseudogenes. PMID:28231343
Considerations and complications of mapping small RNA high-throughput data to transposable elements. PMID:28228849
Unconventional Recombination in the Mating Type Locus of Heterothallic Apple Canker Pathogen Valsa mali. PMID:28228472
Comparative mitogenomics indicates respiratory competence in parasitic Viscum despite loss of complex I and extreme sequence divergence, and reveals horizontal gene transfer and remarkable variation in genome size. PMID:28222679
The distinct features of microbial 'dysbiosis' of Crohn's disease do not occur to the same extent in their unaffected, genetically-linked kindred. PMID:28222161
Autochthonous Outbreak and Expansion of Canine Visceral Leishmaniasis, Uruguay. PMID:28221113
Untangling convoluted taxonomy of Chambriella Rego, Chubb & Pavanelli, 1999 (Cestoda: Proteocephalidae), with erection of Riggenbachiella n. g. and the description of a new species from pimelodid catfishes in the Neotropical Region. PMID:28220284
MetaGaAP: A Novel Pipeline to Estimate Community Composition and Abundance from Non-Model Sequence Data. PMID:28218638
Functional Characterization of a 28-Kilobase Catabolic Island from Pseudomonas sp. Strain M1 Involved in Biotransformation of β-Myrcene and Related Plant-Derived Volatiles. PMID:28213543
Dispersal assembly of rain forest tree communities across the Amazon basin. PMID:28213498
Syntrophic linkage between predatory Carpediemonas and specific prokaryotic populations. PMID:28211847
Genomic structure and insertion sites of Helicobacter pylori prophages from various geographical origins. PMID:28205536
Genome-wide analysis of transposable elements in the coffee berry borer Hypothenemus hampei (Coleoptera: Curculionidae): description of novel families. PMID:28204924
Error-prone DnaE2 Balances the Genome Mutation Rates in Myxococcus xanthus DK1622. PMID:28203231
Patterns and processes of Mycobacterium bovis evolution revealed by phylogenomic analyses. PMID:28201585
Loss of genes related to Nucleotide Excision Repair (NER) and implications for reductive genome evolution in symbionts of deep-sea vesicomyid clams. PMID:28199404
Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus. PMID:28196534
The genetic architecture of low-temperature adaptation in the wine yeast Saccharomyces cerevisiae. PMID:28196526
Evolutionary and functional implications of hypervariable loci within the skin virome. PMID:28194314
Nuclear genetic codes with a different meaning of the UAG and the UAA codon. PMID:28193262
LoaP is a broadly conserved antiterminator protein that regulates antibiotic gene clusters in Bacillus amyloliquefaciens. PMID:28191883
The nucleotide composition of microbial genomes indicates differential patterns of selection on core and accessory genomes. PMID:28187704
An Atlas of Peroxiredoxins Created Using an Active Site Profile-Based Approach to Functionally Relevant Clustering of Proteins. PMID:28187133
Biological species are universal across Life's domains. PMID:28186559
Embracing discordance: Phylogenomic analyses provide evidence for allopolyploidy leading to cryptic diversity in a Mediterranean Campanula (Campanulaceae) clade. PMID:28186341
Phylogenomic relationship of feijoa (Acca sellowiana (O.Berg) Burret) with other Myrtaceae based on complete chloroplast genome sequences. PMID:28185042
Streptomyces aridus sp. nov., isolated from a high altitude Atacama Desert soil and emended description of Streptomyces noboritoensis Isono et al. 1957. PMID:28185026
Porphyromonas gingivalis Uses Specific Domain Rearrangements and Allelic Exchange to Generate Diversity in Surface Virulence Factors. PMID:28184216
ROCker: accurate detection and quantification of target genes in short-read metagenomic data sets by modeling sliding-window bitscores. PMID:28180325
Novel neuro-audiological findings and further evidence for TWNK involvement in Perrault syndrome. PMID:28178980
The genome of Chenopodium quinoa. PMID:28178233
Increased Mitochondrial Genetic Diversity in Persons Infected With Hepatitis C Virus. PMID:28174739
Evolution and Expression of Tissue Globins in Ray-Finned Fishes. PMID:28173090
The Last Common Ancestor of Most Bilaterian Animals Possessed at Least Nine Opsins. PMID:28172965
Increasing cocoa butter-like lipid production of Saccharomyces cerevisiae by expression of selected cocoa genes. PMID:28168573
Taxonomic revision and molecular phylogenetics of the Idarnes incertus species-group (Hymenoptera, Agaonidae, Sycophaginae). PMID:28168097
Virome Assembly and Annotation: A Surprise in the Namib Desert. PMID:28167933
Hybridogenesis and a potential case of R2 non-LTR retrotransposon horizontal transmission in Bacillus stick insects (Insecta Phasmida). PMID:28165062
High-throughput sequencing of multiple amplicons for barcoding and integrative taxonomy. PMID:28165046
A universal computational model for predicting antigenic variants of influenza A virus based on conserved antigenic structures. PMID:28165025
The Carboxy Terminus of YCF1 Contains a Motif Conserved throughout >500 Myr of Streptophyte Evolution. PMID:28164224
The Mitochondrial Genome of the Guanaco Louse, Microthoracius praelongiceps: Insights into the Ancestral Mitochondrial Karyotype of Sucking Lice (Anoplura, Insecta). PMID:28164215
Complete genome of Pieris rapae, a resilient alien, a cabbage pest, and a source of anti-cancer proteins. PMID:28163896
Comparative analysis of NBS-LRR genes and their response to Aspergillus flavus in Arachis. PMID:28158222
Codon optimization underpins generalist parasitism in fungi. PMID:28157073
Comparative Analysis of Six Lagerstroemia Complete Chloroplast Genomes. PMID:28154574
Molecular Systematics of the Genus Acidithiobacillus: Insights into the Phylogenetic Structure and Diversification of the Taxon. PMID:28154559
First Report of Dieback Caused by Lasiodiplodia theobromae in Strawberry Plants in Korea. PMID:28154491
Diversity of Marine-Derived Aspergillus from Tidal Mudflats and Sea Sand in Korea. PMID:28154481
Diversity of Wood-Inhabiting Polyporoid and Corticioid Fungi in Odaesan National Park, Korea. PMID:28154480
Identification of a large, fast-expanding HIV-1 subtype B transmission cluster among MSM in Valencia, Spain. PMID:28152089
Antennal transcriptomes of three tortricid moths reveal putative conserved chemosensory receptors for social and habitat olfactory cues. PMID:28150741
Mitochondrial genome diversity in dagger and needle nematodes (Nematoda: Longidoridae). PMID:28150734
Evolution of gremlin 2 in cetartiodactyl mammals: gene loss coincides with lack of upper jaw incisors in ruminants. PMID:28149683
Patterns of Cellular Immunity Associated with Experimental Infection with rDEN2Δ30 (Tonga/74) Support Its Suitability as a Human Dengue Virus Challenge Strain. PMID:28148797
Comparative genomics of Vibrio campbellii strains and core species of the Vibrio Harveyi clade. PMID:28145490
Development of a human vasopressin V1a-receptor antagonist from an evolutionary-related insect neuropeptide. PMID:28145450
Genomic Features of the Damselfly Calopteryx splendens Representing a Sister Clade to Most Insect Orders. PMID:28137743
Faunal Burrows Alter the Diversity, Abundance, and Structure of AOA, AOB, Anammox and n-Damo Communities in Coastal Mangrove Sediments. PMID:28130576
Melt With This Kiss: Paralyzing and Liquefying Venom of The Assassin Bug Pristhesancus plagipennis (Hemiptera: Reduviidae). PMID:28130397
Unrealistic phylogenetic trees may improve phylogenetic footprinting. PMID:28130227
Primary Human Placental Trophoblasts are Permissive for Zika Virus (ZIKV) Replication. PMID:28128342
Overcoming the loss of blue sensitivity through opsin duplication in the largest animal group, beetles. PMID:28127058
A New record of four Penicillium species isolated from Agarum clathratum in Korea. PMID:28124774
Rapid Identification of Clinically Relevant Members of the Genus Exophiala by Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry and Description of Two Novel Species, Exophiala campbellii and Exophiala lavatrina. PMID:28122875
Fast and simple protein-alignment-guided assembly of orthologous gene families from microbiome sequencing reads. PMID:28122610
Phylogeography of red muntjacs reveals three distinct mitochondrial lineages. PMID:28122497
Enterovirus D68 and other enterovirus serotypes identified in South African patients with severe acute respiratory illness, 2009-2011. PMID:28122175
The Complete Chloroplast Genomes of Three Cardiocrinum (Liliaceae) Species: Comparative Genomic and Phylogenetic Analyses. PMID:28119727
Novel Primer Sets for Next Generation Sequencing-Based Analyses of Water Quality. PMID:28118368
Zika virus disrupts molecular fingerprinting of human neurospheres. PMID:28112162
Completion of the Chloroplast Genomes of Five Chinese Juglans and Their Contribution to Chloroplast Phylogeny. PMID:28111577
Multi-rate Poisson tree processes for single-locus species delimitation under maximum likelihood and Markov chain Monte Carlo. PMID:28108445
A New Israeli Tobamovirus Isolate Infects Tomato Plants Harboring Tm-22 Resistance Genes. PMID:28107419
Molecular Characterization of Voltage-Gated Sodium Channels and Their Relations with Paralytic Shellfish Toxin Bioaccumulation in the Pacific Oyster Crassostrea gigas. PMID:28106838
Parasite infection of public databases: a data mining approach to identify apicomplexan contaminations in animal genome and transcriptome assemblies. PMID:28103801
Phylogenomic analysis of Copepoda (Arthropoda, Crustacea) reveals unexpected similarities with earlier proposed morphological phylogenies. PMID:28103796
Discovery of a novel splice variant of Fcar (CD89) unravels sequence segments necessary for efficient secretion: A story of bad signal peptides and good ones that nevertheless do not make it. PMID:28103138
Co-option of bacteriophage lysozyme genes by bivalve genomes. PMID:28100665
The Tetraspanin-Associated Uroplakins Family (UPK2/3) Is Evolutionarily Related to PTPRQ, a Phosphotyrosine Phosphatase Receptor. PMID:28099513
Spread and Evolution of Respiratory Syncytial Virus A Genotype ON1, Coastal Kenya, 2010-2015. PMID:28098528
Immunoglobulin light chain (IGL) genes in torafugu: Genomic organization and identification of a third teleost IGL isotype. PMID:28098239
Comprehensive transcriptome analysis provides new insights into nutritional strategies and phylogenetic relationships of chrysophytes. PMID:28097055
Whole genome sequencing data and de novo draft assemblies for 66 teleost species. PMID:28094797
Protein multiple sequence alignment benchmarking through secondary structure prediction. PMID:28093407
Antibody 10-1074 suppresses viremia in HIV-1-infected individuals. PMID:28092665
Characterization of two polyvalent phages infecting Enterobacteriaceae. PMID:28091598
Genome Sequencing Reveals the Origin of the Allotetraploid Arabidopsis suecica. PMID:28087777
Rapid Expansion of Immune-Related Gene Families in the House Fly, Musca domestica. PMID:28087775
Genetic mechanisms of bone digestion and nutrient absorption in the bone-eating worm Osedax japonicus inferred from transcriptome and gene expression analyses. PMID:28086748
Acylation of the Type 3 Secretion System Translocon Using a Dedicated Acyl Carrier Protein. PMID:28085879
Molecular phylogeny of a novel human adenovirus type 8 strain causing a prolonged, multi-state keratoconjunctivitis epidemic in Germany. PMID:28084428
Tracking the Evolution of Polymerase Genes of Influenza A Viruses during Interspecies Transmission between Avian and Swine Hosts. PMID:28082971
The forgotten Calonectria collection: Pouring old wine into new bags. PMID:28082759
Diversity and taxonomy of Chaetomium and chaetomium-like fungi from indoor environments. PMID:28082757
Support for Lungfish as the Closest Relative of Tetrapods by Using Slowly Evolving Ray-Finned Fish as the Outgroup. PMID:28082606
Evolution of Chaperonin Gene Duplication in Stigonematalean Cyanobacteria (Subsection V). PMID:28082600
Comparative Genomics of H. pylori and Non-Pylori Helicobacter Species to Identify New Regions Associated with Its Pathogenicity and Adaptability. PMID:28078297
Asgard archaea illuminate the origin of eukaryotic cellular complexity. PMID:28077874
Surveillance of Bat Coronaviruses in Kenya Identifies Relatives of Human Coronaviruses NL63 and 229E and Their Recombination History. PMID:28077633
No signs of inbreeding despite long-term isolation and habitat fragmentation in the critically endangered Montseny brook newt (Calotriton arnoldi). PMID:28074844
Out of Borneo: biogeography, phylogeny and divergence date estimates of Artocarpus (Moraceae). PMID:28073771
Deep sequencing analysis of tick-borne encephalitis virus from questing ticks at natural foci reveals similarities between quasispecies pools of the virus. PMID:28073402
Reading the Evolution of Compartmentalization in the Ribosome Assembly Toolbox: The YRG Protein Family. PMID:28072865
Testing the Efficacy of DNA Barcodes for Identifying the Vascular Plants of Canada. PMID:28072819
New Talaromyces species from indoor environments in China. PMID:28070136
The Complete Maternally and Paternally Inherited Mitochondrial Genomes of a Freshwater Mussel Potamilus alatus (Bivalvia: Unionidae). PMID:28068380
Self-correcting mismatches during high-fidelity DNA replication. PMID:28067916
Structure of the immature Zika virus at 9 Å resolution. PMID:28067914
Supra-operonic clusters of functionally related genes (SOCs) are a source of horizontal gene co-transfers. PMID:28067311
Comparative Analysis of Type IV Pilin in Desulfuromonadales. PMID:28066394
Comparative Genomic Analysis of Bacillus amyloliquefaciens and Bacillus subtilis Reveals Evolutional Traits for Adaptation to Plant-Associated Habitats. PMID:28066362
Widespread Inter- and Intra-Domain Horizontal Gene Transfer of d-Amino Acid Metabolism Enzymes in Eukaryotes. PMID:28066338
Comprehensive Phylogenetic Analysis of Bovine Non-aureus Staphylococci Species Based on Whole-Genome Sequencing. PMID:28066335
Complete chloroplast genome of Gracilaria firma (Gracilariaceae, Rhodophyta), with discussion on the use of chloroplast phylogenomics in the subclass Rhodymeniophycidae. PMID:28061748
Molecular and structural characteristics of multidrug resistance-associated protein 7 in Chinese liver fluke Clonorchis sinensis. PMID:28058535
The Papillomavirus Episteme: a major update to the papillomavirus sequence database. PMID:28053164
Domain Organization and Evolution of the Highly Divergent 5' Coding Region of Genomes of Arteriviruses, Including the Novel Possum Nidovirus. PMID:28053107
High Abundance of the Epibenthic Trachymedusa Ptychogastria polaris Allman, 1878 (Hydrozoa, Trachylina) in Subpolar Fjords along the West Antarctic Peninsula. PMID:28052087
Polyphasic taxonomy of Aspergillus section Cervini. PMID:28050054
Aspergillus section Nidulantes (formerly Emericella): Polyphasic taxonomy, chemistry and biology. PMID:28050053
Identification of Novel Betaherpesviruses in Iberian Bats Reveals Parallel Evolution. PMID:28036408
Novel Role of 3'UTR-Embedded Alu Elements as Facilitators of Processed Pseudogene Genesis and Host Gene Capture by Viral Genomes. PMID:28033411
Transient Duplication-Dependent Divergence and Horizontal Transfer Underlie the Evolutionary Dynamics of Bacterial Cell-Cell Signaling. PMID:28033323
Expansion of the molecular and morphological diversity of Acanthamoebidae (Centramoebida, Amoebozoa) and identification of a novel life cycle type within the group. PMID:28031045
An integrative systematic revision and biogeography of Rhynchocalamus snakes (Reptilia, Colubridae) with a description of a new species from Israel. PMID:28028461
Evolution of Chemosensory Gene Families in Arthropods: Insight from the First Inclusive Comparative Transcriptome Analysis across Spider Appendages. PMID:28028122
Characterization of CYCLOIDEA-like genes in Proteaceae, a basal eudicot family with multiple shifts in floral symmetry. PMID:28025288
Transmission between Archaic and Modern Human Ancestors during the Evolution of the Oncogenic Human Papillomavirus 16. PMID:28025273
Identifying Candidate Targets of Immune Responses in Zika Virus Based on Homology to Epitopes in Other Flavivirus Species. PMID:28018746
Next-generation freshwater bioassessment: eDNA metabarcoding with a conserved metazoan primer reveals species-rich and reservoir-specific communities. PMID:28018653
The Ciliopathy-Associated Cep104 Protein Interacts with Tubulin and Nek1 Kinase. PMID:28017521
Phylogenetic Relationships of the Fern Cyrtomium falcatum (Dryopteridaceae) from Dokdo Island Based on Chloroplast Genome Sequencing. PMID:28009803
Structure and Function of the TIR Domain from the Grape NLR Protein RPV1. PMID:28008335
Unbiased RNA Shotgun Metagenomics in Social and Solitary Wild Bees Detects Associations with Eukaryote Parasites and New Viruses. PMID:28006002
New CRISPR-Cas systems from uncultivated microbes. PMID:28005056
Composition of the Hemagglutinin Polybasic Proteolytic Cleavage Motif Mediates Variable Virulence of H7N7 Avian Influenza Viruses. PMID:28004772
Phylogenomics-guided discovery of a novel conserved cassette of short linear motifs in BubR1 essential for the spindle checkpoint. PMID:28003474
Inference of Functionally-Relevant N-acetyltransferase Residues Based on Statistical Correlations. PMID:28002465
Identification of DEP domain-containing proteins by a machine learning method and experimental analysis of their expression in human HCC tissues. PMID:28000796
Species Delimitation and Interspecific Relationships of the Genus Orychophragmus (Brassicaceae) Inferred from Whole Chloroplast Genomes. PMID:27999584
Complete plastid genome of Eriobotrya japonica (Thunb.) Lindl and comparative analysis in Rosaceae. PMID:27995013
Evolution of floral diversity: genomics, genes and gamma. PMID:27994132
The genome of the Gulf pipefish enables understanding of evolutionary innovations. PMID:27993155
Porcine circovirus type 2 (PCV2) evolution before and after the vaccination introduction: A large scale epidemiological study. PMID:27991573
Western Bats as a Reservoir of Novel Streptomyces Species with Antifungal Activity. PMID:27986729
Convergent patterns in the evolution of mealybug symbioses involving different intrabacterial symbionts. PMID:27983719
Mitochondrial Phylogenomics yields Strongly Supported Hypotheses for Ascaridomorph Nematodes. PMID:27982084
A Phylogeny-Based Global Nomenclature System and Automated Annotation Tool for H1 Hemagglutinin Genes from Swine Influenza A Viruses. PMID:27981236
Recurrent evolution of gut symbiotic bacteria in pentatomid stinkbugs. PMID:27980805
Characterisation of Commensal Escherichia coli Isolated from Apparently Healthy Cattle and Their Attendants in Tanzania. PMID:27977751
Relief of autoinhibition by conformational switch explains enzyme activation by a catalytically dead paralog. PMID:27977001
Genetic diversity and structure of wild populations of Carica papaya in Northern Mesoamerica inferred by nuclear microsatellites and chloroplast markers. PMID:27974326
A novel pleuromutilin antibacterial compound, its binding mode and selectivity mechanism. PMID:27958389
Bamboo tea: reduction of taxonomic complexity and application of DNA diagnostics based on rbcL and matK sequence data. PMID:27957401
Epigenetic Regulation of the Sex Determination Gene MeGI in Polyploid Persimmon. PMID:27956470
Coccomyxa: a dominant planktic alga in two acid lakes of different origin. PMID:27942983
Venom Gland Transcriptomic and Proteomic Analyses of the Enigmatic Scorpion Superstitionia donensis (Scorpiones: Superstitioniidae), with Insights on the Evolution of Its Venom Components. PMID:27941686
Evolution of the Cytolytic Pore-Forming Proteins (Actinoporins) in Sea Anemones. PMID:27941639
Triatomine bugs, their microbiota and Trypanosoma cruzi: asymmetric responses of bacteria to an infected blood meal. PMID:27938415
Genome sequence, population history, and pelage genetics of the endangered African wild dog (Lycaon pictus). PMID:27938335
The evolution of function within the Nudix homology clan. PMID:27936487
Patchiness of Ciliate Communities Sampled at Varying Spatial Scales along the New England Shelf. PMID:27936137
Revisiting Vitis vinifera Subtilase Gene Family: A Possible Role in Grapevine Resistance against Plasmopara viticola. PMID:27933087
Metabarcoding of marine nematodes - evaluation of reference datasets used in tree-based taxonomy assignment approach. PMID:27932919
Complete Genome Sequence of Bacteriophage MA12, Which Infects both Campylobacter jejuni and Salmonella enterica Serovar Enteritidis. PMID:27932636
Genome Sequence of Bacteriophage GG32, Which Can Infect both Salmonella enterica Serovar Typhimurium and Escherichia coli O157:H7. PMID:27932635
The Plastid Genome of Polytoma uvella Is the Largest Known among Colorless Algae and Plants and Reflects Contrasting Evolutionary Paths to Nonphotosynthetic Lifestyles. PMID:27932420
A diverse intrinsic antibiotic resistome from a cave bacterium. PMID:27929110
First complete mitochondrial genome data from ancient South American camelids - The mystery of the chilihueques from Isla Mocha (Chile). PMID:27929050
DNA Data Bank of Japan. PMID:27924010
Phylogenetic placement of the Pacific Northwest subterranean endemic diving beetle Stygoporus oregonensis Larson & LaBonte (Dytiscidae, Hydroporinae). PMID:27920606
A Sulfur Oxygenase from the Haloalkaliphilic Bacterium Thioalkalivibrio paradoxus with Atypically Low Reductase Activity. PMID:27920296
MOZART1 and γ-tubulin complex receptors are both required to turn γ-TuSC into an active microtubule nucleation template. PMID:27920216
Three-dimensional Modelling of the Voltage-gated Sodium Ion Channel from Anopheles gambiae Reveals Spatial Clustering of Evolutionarily Conserved Acidic Residues at the Extracellular Sites. PMID:27919210
The complete chloroplast genome sequence of Helwingia himalaica (Helwingiaceae, Aquifoliales) and a chloroplast phylogenomic analysis of the Campanulidae. PMID:27917320
The first complete plastid genomes of Melastomataceae are highly structurally conserved. PMID:27917315
Systematics of Ecnomiohyla tuberculosa with the description of a new species and comments on the taxonomy of Trachycephalus typhonius (Anura, Hylidae). PMID:27917043
Transmission networks and risk of HIV infection in KwaZulu-Natal, South Africa: a community-wide phylogenetic study. PMID:27914874
Advantages of an Improved Rhesus Macaque Genome for Evolutionary Analyses. PMID:27911958
The unconventional kinetoplastid kinetochore: from discovery toward functional understanding. PMID:27911702
Deep, Staged Transcriptomic Resources for the Novel Coleopteran Models Atrachya menetriesi and Callosobruchus maculatus. PMID:27907180
The plastid genome of some eustigmatophyte algae harbours a bacteria-derived six-gene cluster for biosynthesis of a novel secondary metabolite. PMID:27906133
Selection for predation, not female fecundity, explains sexual size dimorphism in the orchid mantises. PMID:27905469
TLR-2 Recognizes Propionibacterium acnes CAMP Factor 1 from Highly Inflammatory Strains. PMID:27902761
Identification and expression analyses of new potential regulators of xylem development and cambium activity in cassava (Manihot esculenta). PMID:27900471
CATH: an expanded resource to predict protein function through structure and sequence. PMID:27899584
WormBase ParaSite - a comprehensive resource for helminth genomics. PMID:27899279
Support for targeted sampling of red fox (Vulpes vulpes) feces in Sweden: a method to improve the probability of finding Echinococcus multilocularis. PMID:27899131
Multigene phylogenetic analysis redefines dung beetles relationships and classification (Coleoptera: Scarabaeidae: Scarabaeinae). PMID:27899070
Discovery of methylfarnesoate as the annelid brain hormone reveals an ancient role of sesquiterpenoids in reproduction. PMID:27894418
Diversification in wild populations of the model organism Anolis carolinensis: A genome-wide phylogeographic investigation. PMID:27891220
Quest for Ancestors of Eukaryal Cells Based on Phylogenetic Analyses of Aminoacyl-tRNA Synthetases. PMID:27889804
Evolutionary Adaptation of the Essential tRNA Methyltransferase TrmD to the Signaling Molecule 3',5'-cAMP in Bacteria. PMID:27881678
Structure of the MIS12 Complex and Molecular Basis of Its Interaction with CENP-C at Human Kinetochores. PMID:27881301
Genome-wide analyses of chitin synthases identify horizontal gene transfers towards bacteria and allow a robust and unifying classification into fungi. PMID:27881071
Redefining the invertebrate RNA virosphere. PMID:27880757
Cool habitats support darker and bigger butterflies in Australian tropical forests. PMID:27878078
Genomic diversity in Onchocerca volvulus and its Wolbachia endosymbiont. PMID:27869792
The genome of Onchocerca volvulus, agent of river blindness. PMID:27869790
A new species of Trichoderma hypoxylon harbours abundant secondary metabolites. PMID:27869187
Molecular phylogeny of the cosmopolitan aquatic plant genus Limosella (Scrophulariaceae) with a particular focus on the origin of the Australasian L. curdieana. PMID:27864639
Proteomics and comparative genomics of Nitrososphaera viennensis reveal the core genome and adaptations of archaeal ammonia oxidizers. PMID:27864514
Microbial Nursery Production of High-Quality Biological Soil Crust Biomass for Restoration of Degraded Dryland Soils. PMID:27864178
Two Opsin 3-Related Proteins in the Chicken Retina and Brain: A TMT-Type Opsin 3 Is a Blue-Light Sensor in Retinal Horizontal Cells, Hypothalamus, and Cerebellum. PMID:27861495
Complete chloroplast genome of a valuable medicinal plant, Huperzia serrata (Lycopodiaceae), and comparison with its congener. PMID:27843724
Combined morphological and molecular data unveils relationships of Pseudobranchiomma (Sabellidae, Annelida) and reveals higher diversity of this intriguing group of fan worms in Australia, including potentially introduced species. PMID:27843378
Dietary nitrogen alters codon bias and genome composition in parasitic microorganisms. PMID:27842572
Comparative genomic analysis of the flagellin glycosylation island of the Gram-positive thermophile Geobacillus. PMID:27842516
The full genome sequences of 8 equine herpesvirus type 4 isolates from horses in Japan. PMID:27840393
Complete mitochondrial genomes of Thai and Lao populations indicate an ancient origin of Austroasiatic groups and demic diffusion in the spread of Tai-Kadai languages. PMID:27837350
Phylogeography of a good Caribbean disperser: Argiope argentata (Araneae, Araneidae) and a new 'cryptic' species from Cuba. PMID:27833425
Comparative transcriptomics enlarges the toolkit of known developmental genes in mollusks. PMID:27832738
Comparative Genome Analysis of Extended-Spectrum-β-Lactamase-Producing Escherichia coli Sequence Type 131 Strains from Nepal and Japan. PMID:27830191
Resolving Cypriniformes relationships using an anchored enrichment approach. PMID:27829363
Remarkable Diversity and Prevalence of Dagger Nematodes of the Genus Xiphinema Cobb, 1913 (Nematoda: Longidoridae) in Olives Revealed by Integrative Approaches. PMID:27829048
Biogeography and Character Evolution of the Ciliate Genus Euplotes (Spirotrichea, Euplotia), with Description of Euplotes curdsi sp. nov. PMID:27828996
Ecological dynamics of influenza A viruses: cross-species transmission and global migration. PMID:27827462
Resurrecting ancestral structural dynamics of an antiviral immune receptor: adaptive binding pocket reorganization repeatedly shifts RNA preference. PMID:27825296
Prediction of a neuropeptidome for the eyestalk ganglia of the lobster Homarus americanus using a tissue-specific de novo assembled transcriptome. PMID:27823957
Antiplasmodial Activity Is an Ancient and Conserved Feature of Tick Defensins. PMID:27822206
Embryonic chirality and the evolution of spiralian left-right asymmetries. PMID:27821523
Box Jellyfish Alatina alata Has a Circumtropical Distribution. PMID:27820907
Genome Dynamics and Molecular Infection Epidemiology of Multidrug-Resistant Helicobacter pullorum Isolates Obtained from Broiler and Free-Range Chickens in India. PMID:27815276
Ecogenomic survey of plant viruses infecting Tobacco by Next generation sequencing. PMID:27814723
Prevalence and epidemiology of meningococcal carriage in Southern Ethiopia prior to implementation of MenAfriVac, a conjugate vaccine. PMID:27814682
Ebola Virus Glycoprotein with Increased Infectivity Dominated the 2013-2016 Epidemic. PMID:27814506
Evolution of genes involved in feeding preference and metabolic processes in Calliphoridae (Diptera: Calyptratae). PMID:27812410
IBBOMSA: An Improved Biogeography-based Approach for Multiple Sequence Alignment. PMID:27812276
Transcriptomic data from panarthropods shed new light on the evolution of insulator binding proteins in insects : Insect insulator proteins. PMID:27809783
Comparative Analysis of HaSNPV-AC53 and Derived Strains. PMID:27809232
Metabolism of Toxic Sugars by Strains of the Bee Gut Symbiont Gilliamella apicola. PMID:27803186
Geographic distribution at subspecies resolution level: closely related Rhodopirellula species in European coastal sediments. PMID:27801907
Influence of phylogenetic conservatism and trait convergence on the interactions between fungal root endophytes and plants. PMID:27801904
Conserved Ankyrin Repeat Proteins and Their NIMA Kinase Partners Regulate Extracellular Matrix Remodeling and Intracellular Trafficking in Caenorhabditis elegans. PMID:27799278
Control of inflorescence architecture in tomato by BTB/POZ transcriptional regulators. PMID:27798848
Complex Evolutionary Dynamics of Massively Expanded Chemosensory Receptor Families in an Extreme Generalist Chelicerate Herbivore. PMID:27797949
Evolutionary study of Yersinia genomes deciphers emergence of human pathogenic species. PMID:27796355
Full genome sequence analysis of a newly emerged QX-like infectious bronchitis virus from Sudan reveals distinct spots of recombination. PMID:27793730
In-phase oscillation of global regulons is orchestrated by a pole-specific organizer. PMID:27791133
Horizontal gene transfer is more frequent with increased heterotrophy and contributes to parasite adaptation. PMID:27791104
Comparative Transcriptome and Chloroplast Genome Analyses of Two Related Dipteronia Species. PMID:27790228
Five New Wood Decay Fungi (Polyporales and Hymenochaetales) in Korea. PMID:27790065
Seven New Recorded Species in Five Genera of the Strophariaceae in Korea. PMID:27790064
Phylogenetic Identification of Korean Gymnopus spp. and the First Report of 3 Species: G. iocephalus, G. polygrammus, and G. subnudus. PMID:27790063
Hirudins and hirudin-like factors in Hirudinidae: implications for function and phylogenetic relationships. PMID:27785600
Transcriptomic resources and marker validation for diploid and polyploid Veronica (Plantaginaceae) from New Zealand and Europe. PMID:27785388
Fusarium tricinctum, An Endophytic Fungus Exhibits Cell Growth Inhibition and Antioxidant Activity. PMID:27784939
The Impact of Chromatin Dynamics on Cas9-Mediated Genome Editing in Human Cells. PMID:27783893
Molecular phylogeny of Polyneoptera (Insecta) inferred from expanded mitogenomic data. PMID:27782189
De novo transcriptome assembly facilitates characterisation of fast-evolving gene families, MHC class I in the bank vole (Myodes glareolus). PMID:27782121
Molecular phylogeny of the megadiverse insect infraorder Bibionomorpha sensu lato (Diptera). PMID:27781163
The non-mammalian MIF superfamily. PMID:27780588
Immune genes and divergent antimicrobial peptides in flies of the subgenus Drosophila. PMID:27776480
The role of PHD2 mutations in the pathogenesis of erythrocytosis. PMID:27774468
Potential of Polycyclic Aromatic Hydrocarbon-Degrading Bacterial Isolates to Contribute to Soil Fertility. PMID:27774456
Tobamoviruses have probably co-diverged with their eudicotyledonous hosts for at least 110 million years. PMID:27774289
The evolution, diversity, and host associations of rhabdoviruses. PMID:27774286
Elucidating the phylodynamics of endemic rabies virus in eastern Africa using whole-genome sequencing. PMID:27774283
Microbiological and bioinformatics analysis of primary Sjogren's syndrome patients with normal salivation. PMID:27770517
Crystal Structure of the Human Cannabinoid Receptor CB1. PMID:27768894
Progressive Loss of Function in a Limb Enhancer during Snake Evolution. PMID:27768887
The 2014 Ebola virus outbreak in West Africa highlights no evidence of rapid evolution or adaptation to humans. PMID:27767073
Revising the Schizoparmaceae: Coniella and its synonyms Pilidiella and Schizoparme. PMID:27766001
Identification of internalin-A-like virulent proteins in Leishmania donovani. PMID:27765050
The Chloroplast Genome of Utricularia reniformis Sheds Light on the Evolution of the ndh Gene Complex of Terrestrial Carnivorous Plants from the Lentibulariaceae Family. PMID:27764252
A direct-sensing galactose chemoreceptor recently evolved in invasive strains of Campylobacter jejuni. PMID:27762269
The ethnobotany of psychoactive plant use: a phylogenetic perspective. PMID:27761334
Corallimorpharians are not "naked corals": insights into relationships between Scleractinia and Corallimorpharia from phylogenomic analyses. PMID:27761308
Genome Sequencing and Comparative Genomics Analysis Revealed Pathogenic Potential in Penicillium capsulatum as a Novel Fungal Pathogen Belonging to Eurotiales. PMID:27761131
BdorOBP83a-2 Mediates Responses of the Oriental Fruit Fly to Semiochemicals. PMID:27761116
Evolution of the Tim17 protein family. PMID:27760563
Revisiting Recombination Signal in the Tick-Borne Encephalitis Virus: A Simulation Approach. PMID:27760182
Mechanism for DNA transposons to generate introns on genomic scales. PMID:27760113
Mitochondrial Genomes of Kinorhyncha: trnM Duplication and New Gene Orders within Animals. PMID:27755612
Toxicity and Growth Assessments of Three Thermophilic Benthic Dinoflagellates (Ostreopsis cf. ovata, Prorocentrum lima and Coolia monotis) Developing in the Southern Mediterranean Basin. PMID:27754462
A natural barrier to lateral gene transfer from prokaryotes to eukaryotes revealed from genomes: the 70 % rule. PMID:27751184
The Large Subunit rDNA Sequence of Plasmodiophora brassicae Does not Contain Intra-species Polymorphism. PMID:27750174
The complete salmonid IGF-IR gene repertoire and its transcriptional response to disease. PMID:27748369
Unique and Universal Features of Epsilonproteobacterial Origins of Chromosome Replication and DnaA-DnaA Box Interactions. PMID:27746772
Host Range of the Conjugative Transfer System of IncP-9 Naphthalene-Catabolic Plasmid NAH7 and Characterization of Its oriT Region and Relaxase. PMID:27742684
Arbuscular mycorrhizal interactions of mycoheterotrophic Thismia are more specialized than in autotrophic plants. PMID:27739593
A Novel Class of Small Molecule Agonists with Preference for Human over Mouse TLR4 Activation. PMID:27736941
Short Interspersed Nuclear Element (SINE) Sequences in the Genome of the Human Pathogenic Fungus Aspergillus fumigatus Af293. PMID:27736869
Phylogeny of anaerobic fungi (phylum Neocallimastigomycota), with contributions from yak in China. PMID:27734254
Exploiting Bacterial Whole-Genome Sequencing Data for Evaluation of Diagnostic Assays: Campylobacter Species Identification as a Case Study. PMID:27733632
Expanding anchored hybrid enrichment to resolve both deep and shallow relationships within the spider tree of life. PMID:27733110
Around the World in Eight Million Years: Historical Biogeography and Evolution of the Spray Zone Spider Amaurobioides (Araneae: Anyphaenidae). PMID:27732621
Identification of lipoxygenase (LOX) genes from legumes and their responses in wild type and cultivated peanut upon Aspergillus flavus infection. PMID:27731413
Simultaneous identification of specifically interacting paralogs and interprotein contacts by direct coupling analysis. PMID:27729520
An assemblage of Frankia Cluster II strains from California contains the canonical nod genes and also the sulfotransferase gene nodH. PMID:27729005
The Mitochondrial Genomes of the Zoonotic Canine Filarial Parasites Dirofilaria (Nochtiella) repens and Candidatus Dirofilaria (Nochtiella) hongkongensis Provide Evidence for Presence of Cryptic Species. PMID:27727270
Next-Generation Sequencing of Two Mitochondrial Genomes from Family Pompilidae (Hymenoptera: Vespoidea) Reveal Novel Patterns of Gene Arrangement. PMID:27727175
Chloroplast genomes as a tool to resolve red algal phylogenies: a case study in the Nemaliales. PMID:27724867
A Tale of Tails: Dissecting the Enhancing Effect of Tailed Primers in Real-Time PCR. PMID:27723800
Functional and Structural Consequences of Nine CYP21A2 Mutations Ranging from Very Mild to Severe Effects. PMID:27721825
Molecular evolution of Odorant-binding proteins gene family in two closely related Anastrepha fruit flies. PMID:27716035
Arginine deiminase pathway enzymes: evolutionary history in metamonads and other eukaryotes. PMID:27716026
Sequence amplification via cell passaging creates spurious signals of positive adaptation in influenza virus H3N2 hemagglutinin. PMID:27713835
Recent origin and semi-permeable species boundaries in the scleractinian coral genus Stylophora from the Red Sea. PMID:27713475
Evolutionary interplay between sister cytochrome P450 genes shapes plasticity in plant metabolism. PMID:27713409
SONAR: A High-Throughput Pipeline for Inferring Antibody Ontogenies from Longitudinal Sequencing of B Cell Transcripts. PMID:27708645
A Phenotypic and Genotypic Analysis of the Antimicrobial Potential of Cultivable Streptomyces Isolated from Cave Moonmilk Deposits. PMID:27708627
A cytosolic carbonic anhydrase molecular switch occurs in the gills of metamorphic sea lamprey. PMID:27703170
Developmental Control and Plasticity of Fruit and Seed Dimorphism in Aethionema arabicum. PMID:27702842
An Updated List of Generic Names in the Thoracosphaeraceae. PMID:27694767
Genomic Survey of a Hyperparasitic Microsporidian Amphiamblys sp. (Metchnikovellidae). PMID:27694476
Dynamic variation of CD5 surface expression levels within individual chronic lymphocytic leukemia clones. PMID:27693386
A pre-metazoan origin of the CRK gene family and co-opted signaling network. PMID:27686861
Genomic Analysis Reveals Novel Diversity among the 1976 Philadelphia Legionnaires' Disease Outbreak Isolates and Additional ST36 Strains. PMID:27684472
Concomitant emergence of the antisense protein gene of HIV-1 and of the pandemic. PMID:27681623
High-Resolution Identification of Specificity Determining Positions in the LacI Protein Family Using Ensembles of Sub-Sampled Alignments. PMID:27681038
Hidden diversity of Acoelomorpha revealed through metabarcoding. PMID:27677819
Divergence of cuticular hydrocarbons in two sympatric grasshopper species and the evolution of fatty acid synthases and elongases across insects. PMID:27677406
Reconstructing the Backbone of the Saccharomycotina Yeast Phylogeny Using Genome-Scale Data. PMID:27672114
FAMSA: Fast and accurate multiple sequence alignment of huge protein families. PMID:27670777
Effect of different vaccination strategies on IBV QX population dynamics and clinical outbreaks. PMID:27670071
Genome-Wide Characterization and Expression Analysis of the Germin-Like Protein Family in Rice and Arabidopsis. PMID:27669230
Two distinct RNase activities of CRISPR-C2c2 enable guide-RNA processing and RNA detection. PMID:27669025
Genomic Mining of Phylogenetically Informative Nuclear Markers in Bark and Ambrosia Beetles. PMID:27668729
New species of Trophoniella from Shimoda, Japan (Annelida, Flabelligeridae). PMID:27667929
The Wide Distribution and Change of Target Specificity of R2 Non-LTR Retrotransposons in Animals. PMID:27662593
The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species. PMID:27659211
Hoarding and horizontal transfer led to an expanded gene and intron repertoire in the plastid genome of the diatom, Toxarium undulatum (Bacillariophyta). PMID:27655214
Adaptive radiation by waves of gene transfer leads to fine-scale resource partitioning in marine microbes. PMID:27653556
Comparative genomics reveals adaptive evolution of Asian tapeworm in switching to a new intermediate host. PMID:27653464
Evolutionary patterns of range size, abundance and species richness in Amazonian angiosperm trees. PMID:27651991
Phylogenomic networks reveal limited phylogenetic range of lateral gene transfer by transduction. PMID:27648812
Novel insights into the origin and diversification of photosynthesis based on analyses of conserved indels in the core reaction center proteins. PMID:27638319
Convergent evolution of caffeine in plants by co-option of exapted ancestral enzymes. PMID:27638206
Structural Biology and Evolution of the TGF-β Family. PMID:27638177
Verdant: automated annotation, alignment and phylogenetic analysis of whole chloroplast genomes. PMID:27634949
Horizontal gene transfer drives adaptive colonization of apple trees by the fungal pathogen Valsa mali. PMID:27634406
EnsCat: clustering of categorical data via ensembling. PMID:27634377
Slowly dispersing neotenic beetles can speciate on a penny coin and generate space-limited diversity in the tropical mountains. PMID:27633844
Discovery of species-wide tool use in the Hawaiian crow. PMID:27629645
Adipokinetic hormones and their G protein-coupled receptors emerged in Lophotrochozoa. PMID:27628442
Vitamin B2 as a virulence factor in Pseudogymnoascus destructans skin infection. PMID:27620349
The divorce of Sporothrix and Ophiostoma: solution to a problematic relationship. PMID:27616802
Fifteen new species of Penicillium. PMID:27616792
Generic hyper-diversity in Stachybotriaceae. PMID:27616791
A taxonomic review of Penicillium species producing conidiophores with solitary phialides, classified in section Torulomyces. PMID:27616790
Phylogenetic reassessment of the Chaetomium globosum species complex. PMID:27616789
Taxonomic and phylogenetic re-evaluation of Microdochium, Monographella and Idriella. PMID:27616788
Toward a Self-Updating Platform for Estimating Rates of Speciation and Migration, Ages, and Relationships of Taxa. PMID:27616324
Substitutions in the Glycogenin-1 Gene Are Associated with the Evolution of Endothermy in Sharks and Tunas. PMID:27614233
The genomes of three North American orthopoxviruses. PMID:27613417
Contribution of type W human endogenous retroviruses to the human genome: characterization of HERV-W proviral insertions and processed pseudogenes. PMID:27613107
Human Contamination in Public Genome Assemblies. PMID:27611326
Domestication and Divergence of Saccharomyces cerevisiae Beer Yeasts. PMID:27610566
The diversity of mtDNA rns introns among strains of Ophiostoma piliferum, Ophiostoma pluriannulatum and related species. PMID:27610327
What Signatures Dominantly Associate with Gene Age? PMID:27609935
Evolution and Ecology of Actinobacteria and Their Bioenergy Applications. PMID:27607553
Sequential Turnovers of Sex Chromosomes in African Clawed Frogs (Xenopus) Suggest Some Genomic Regions Are Good at Sex Determination. PMID:27605520
Molecular archeological evidence in support of the repeated loss of a papillomavirus gene. PMID:27604338
High throughput techniques to reveal the molecular physiology and evolution of digestion in spiders. PMID:27604083
Ureaplasma diversum Genome Provides New Insights about the Interaction of the Surface Molecules of This Bacterium with the Host. PMID:27603136
The cnidarian Hydractinia echinata employs canonical and highly adapted histones to pack its DNA. PMID:27602058
Comparative transcriptomics of anal fin pigmentation patterns in cichlid fishes. PMID:27600936
Snapshots of a shrinking partner: Genome reduction in Serratia symbiotica. PMID:27599759
Patterns of Transcript Abundance of Eukaryotic Biogeochemically-Relevant Genes in the Amazon River Plume. PMID:27598790
A +1 ribosomal frameshifting motif prevalent among plant amalgaviruses. PMID:27596539
Characterization of the complete mitochondrial genome of the cloacal tapeworm Cloacotaenia megalops (Cestoda: Hymenolepididae). PMID:27595753
Adaptive patterns in the p53 protein sequence of the hypoxia- and cancer-tolerant blind mole rat Spalax. PMID:27590526
Low genetic diversity among historical and contemporary clinical isolates of felid herpesvirus 1. PMID:27589862
Chloroplast Genome Evolution in Actinidiaceae: clpP Loss, Heterogenous Divergence and Phylogenomic Practice. PMID:27589600
A new species of frog of the genus Pristimantis from Tingo María National Park, Huánuco Department, central Peru (Anura, Craugastoridae). PMID:27587978
Genome Sequence of a Candidate World Health Organization Reference Strain of Zika Virus for Nucleic Acid Testing. PMID:27587826
Adaptive molecular evolution of the two-pore channel 1 gene TPC1 in the karst-adapted genus Primulina (Gesneriaceae). PMID:27582362
Structure of an N276-Dependent HIV-1 Neutralizing Antibody Targeting a Rare V5 Glycan Hole Adjacent to the CD4 Binding Site. PMID:27581986
Comparison of the complete genome sequences of four γ-hexachlorocyclohexane-degrading bacterial strains: insights into the evolution of bacteria able to degrade a recalcitrant man-made pesticide. PMID:27581378
Characterization of Toxin Complex Gene Clusters and Insect Toxicity of Bacteria Representing Four Subgroups of Pseudomonas fluorescens. PMID:27580176
The complete mitochondrial genome of the tapeworm Cladotaenia vulturi (Cestoda: Paruterinidae): gene arrangement and phylogenetic relationships with other cestodes. PMID:27576315
Tectonic collision and uplift of Wallacea triggered the global songbird radiation. PMID:27575437
Chemotaxis cluster 1 proteins form cytoplasmic arrays in Vibrio cholerae and are stabilized by a double signaling domain receptor DosM. PMID:27573843
Viral Genome Sequencing Proves Nosocomial Transmission of Fatal Varicella. PMID:27571904
Role of the host restriction factor APOBEC3 on papillomavirus evolution. PMID:27570633
All that glitters is not Ramularia. PMID:27570325
A Multicomponent Animal Virus Isolated from Mosquitoes. PMID:27569558
Genetic Drift, Not Life History or RNAi, Determine Long-Term Evolution of Transposable Elements. PMID:27566762
Streamlined analysis of duplex sequencing data with Du Novo. PMID:27566673
Clonal Evolution of Enterocytozoon bieneusi Populations in Swine and Genetic Differentiation in Subpopulations between Isolates from Swine and Humans. PMID:27563718
The physiology and habitat of the last universal common ancestor. PMID:27562259
Expression of segment polarity genes in brachiopods supports a non-segmental ancestral role of engrailed for bilaterians. PMID:27561213
Comparison of intraspecific, interspecific and intergeneric chloroplast diversity in Cycads. PMID:27558458
Non-excitable fluorescent protein orthologs found in ctenophores. PMID:27557948
Animal Mitochondrial DNA as We Do Not Know It: mt-Genome Organization and Evolution in Nonbilaterian Lineages. PMID:27557826
Whole genomic sequence analysis of Bacillus infantis: defining the genetic blueprint of strain NRRL B-14911, an emerging cardiopathogenic microbe. PMID:27557119
Regeneration in bipinnaria larvae of the bat star Patiria miniata induces rapid and broad new gene expression. PMID:27555501
A new species of Pristimantis from southern Ecuador (Anura, Craugastoridae). PMID:27551223
Structural basis for the CsrA-dependent modulation of translation initiation by an ancient regulatory protein. PMID:27551070
Positive selection on panpulmonate mitogenomes provide new clues on adaptations to terrestrial life. PMID:27549326
Gall-ID: tools for genotyping gall-causing phytopathogenic bacteria. PMID:27547538
Evolution of opercle bone shape along a macrohabitat gradient: species identification using mtDNA and geometric morphometric analyses in neotropical sea catfishes (Ariidae). PMID:27547357
Sporadic Gene Loss After Duplication Is Associated with Functional Divergence of Sirtuin Deacetylases Among Candida Yeast Species. PMID:27543294
UAP56 is a conserved crucial component of a divergent mRNA export pathway in Toxoplasma gondii. PMID:27542978
Identification of Complete Repertoire of Apis florea Odorant Receptors Reveals Complex Orthologous Relationships with Apis mellifera. PMID:27540087
Positive Selection Pressure Drives Variation on the Surface-Exposed Variable Proteins of the Pathogenic Neisseria. PMID:27532335
Genomic analysis reveals hidden biodiversity within colugos, the sister group to primates. PMID:27532052
Diversity of apostome ciliates, Chromidina spp. (Oligohymenophorea, Opalinopsidae), parasites of cephalopods of the Mediterranean Sea. PMID:27530149
The making of a pest: Insights from the evolution of chemosensory receptor families in a pestiferous and invasive fly, Drosophila suzukii. PMID:27530109
Phylodynamic Characterization of an Ocular-Tropism Coxsackievirus A24 Variant. PMID:27529556
Molluscs for Sale: Assessment of Freshwater Gastropods and Bivalves in the Ornamental Pet Trade. PMID:27525660
Genetic Characterization and Comparative Genome Analysis of Brucella melitensis Isolates from India. PMID:27525259
Multiple Independent Retroelement Insertions in the Promoter of a Stress Response Gene Have Variable Molecular and Functional Effects in Drosophila. PMID:27517860
LRR-RLK family from two Citrus species: genome-wide identification and evolutionary aspects. PMID:27515968
A Comparative Analysis of Sonic Defences in Bombycoidea Caterpillars. PMID:27510510
Three rDNA Loci-Based Phylogenies of Tintinnid Ciliates (Ciliophora, Spirotrichea, Choreotrichida). PMID:27509323
Extended Evaluation of Virological, Immunological and Pharmacokinetic Endpoints of CELADEN: A Randomized, Placebo-Controlled Trial of Celgosivir in Dengue Fever Patients. PMID:27509020
Phylodynamic analysis of porcine circovirus type 2: Methodological approach and datasets. PMID:27508215
The DEK1 Calpain Linker Functions in Three-Dimensional Body Patterning in Physcomitrella patens. PMID:27506240
A tissue-specific protein purification approach in Caenorhabditis elegans identifies novel interaction partners of DLG-1/Discs large. PMID:27506200
The methanogenic redox cofactor F420 is widely synthesized by aerobic soil bacteria. PMID:27505347
Comparative Genomics Analysis of Streptococcus tigurinus Strains Identifies Genetic Elements Specifically and Uniquely Present in Highly Virulent Strains. PMID:27505001
Take-all or nothing. PMID:27504028
Signatures of selection and host-adapted gene expression of the Phytophthora infestans RNA silencing suppressor PSR2. PMID:27503598
Comparative Large-Scale Mitogenomics Evidences Clade-Specific Evolutionary Trends in Mitochondrial DNAs of Bivalvia. PMID:27503296
Multiple Lines of Evidence from Mitochondrial Genomes Resolve Phylogenetic Relationships of Parasitic Wasps in Braconidae. PMID:27503293
Differentiating sibling species of Zeugodacus caudatus (Insecta: Tephritidae) by complete mitochondrial genome. PMID:27502829
An ATP Binding Cassette Transporter Mediates the Uptake of α-(1,6)-Linked Dietary Oligosaccharides in Bifidobacterium and Correlates with Competitive Growth on These Substrates. PMID:27502277
Membrane Proteins Are Dramatically Less Conserved than Water-Soluble Proteins across the Tree of Life. PMID:27501943
Genomic Analysis of Viral Outbreaks. PMID:27501264
Genome Sequence of the Edible Cultivated Mushroom Lentinula edodes (Shiitake) Reveals Insights into Lignocellulose Degradation. PMID:27500531
Ringiculid bubble snails recovered as the sister group to sea slugs (Nudipleura). PMID:27498754
Gene family expansions and contractions are associated with host range in plant pathogens of the genus Colletotrichum. PMID:27496087
A Genome-Scale Investigation of How Sequence, Function, and Tree-Based Gene Properties Influence Phylogenetic Inference. PMID:27492233
The life cycle of Thelohanellus kitauei (Myxozoa: Myxosporea) infecting common carp (Cyprinus carpio) involves aurantiactinomyxon in Branchiura sowerbyi. PMID:27492197
Structure of the Saccharomyces cerevisiae Hrr25:Mam1 monopolin subcomplex reveals a novel kinase regulator. PMID:27491543
Restructuring of Holocentric Centromeres During Meiosis in the Plant Rhynchospora pubera. PMID:27489000
Plastid phylogenomic study of species within the genus Zea: rates and patterns of three classes of microstructural changes. PMID:27488804
SAR11 bacteria linked to ocean anoxia and nitrogen loss. PMID:27487207
Relaxed selective constraints drove functional modifications in peripheral photoreception of the cavefish P. andruzzii and provide insight into the time of cave colonization. PMID:27485669
Genomic mechanisms for cold tolerance and production of exopolysaccharides in the Arctic cyanobacterium Phormidesmis priestleyi BC1401. PMID:27485510
Lack of concordance between residual viremia and viral variants driving de novo infection of CD4(+) T cells on ART. PMID:27484989
Reduction, alignment and visualisation of large diverse sequence families. PMID:27484804
On the reversibility of parasitism: adaptation to a free-living lifestyle via gene acquisitions in the diplomonad Trepomonas sp. PC1. PMID:27480115
Evidence for an Early Origin of Vernalization Responsiveness in Temperate Pooideae Grasses. PMID:27474116
Phylogenetic and geographic patterns of bartonella host shifts among bat species. PMID:27473781
Widely distributed and regionally isolated! Drivers of genetic structure in Gammarus fossarum in a human-impacted landscape. PMID:27473498
The Glutathione-S-Transferase, Cytochrome P450 and Carboxyl/Cholinesterase Gene Superfamilies in Predatory Mite Metaseiulus occidentalis. PMID:27467523
Phylogenomics and Divergence Dating of Fungus-Farming Ants (Hymenoptera: Formicidae) of the Genera Sericomyrmex and Apterostigma. PMID:27466804
Structural dissection of a complex Bacteroides ovatus gene locus conferring xyloglucan metabolism in the human gut. PMID:27466444
Genomic epidemiology and global diversity of the emerging bacterial pathogen Elizabethkingia anophelis. PMID:27461509
Three-Dimensional Model of Human Nicotinamide Nucleotide Transhydrogenase (NNT) and Sequence-Structure Analysis of its Disease-Causing Variations. PMID:27459240
Adaptive thermostability of light-harvesting complexes in marine picocyanobacteria. PMID:27458784
The phylogeny of C/S1 bZIP transcription factors reveals a shared algal ancestry and the pre-angiosperm translational regulation of S1 transcripts. PMID:27457880
The effect of DNA extraction methodology on gut microbiota research applications. PMID:27456340
Computational studies of human class V alcohol dehydrogenase - the odd sibling. PMID:27455956
Comparative analysis of plastid genomes of non-photosynthetic Ericaceae and their photosynthetic relatives. PMID:27452401
Microsporomyces hainanensis sp. nov., Isolated from Hybrid Rice (Oryza sativa L.) Seeds. PMID:27447796
Crystal Structure of a Group I Energy Coupling Factor Vitamin Transporter S Component in Complex with Its Cognate Substrate. PMID:27447050
Was the Chlamydial Adaptative Strategy to Tryptophan Starvation an Early Determinant of Plastid Endosymbiosis? PMID:27446814
Comparative Analysis of the Complete Chloroplast Genomes of Five Quercus Species. PMID:27446185
Characterization of Five Podoviridae Phages Infecting Citrobacter freundii. PMID:27446058
Whole-Genome Sequence of Chlamydia gallinacea Type Strain 08-1274/3. PMID:27445388
Basidiomycete yeasts in the cortex of ascomycete macrolichens. PMID:27445309
African Horse Sickness Caused by Genome Reassortment and Reversion to Virulence of Live, Attenuated Vaccine Viruses, South Africa, 2004-2014. PMID:27442883
Whole Genome Sequencing Allows Better Understanding of the Evolutionary History of Leptospira interrogans Serovar Hardjo. PMID:27442015
Antennal and Abdominal Transcriptomes Reveal Chemosensory Genes in the Asian Citrus Psyllid, Diaphorina citri. PMID:27441376
A Genomic Analysis of Factors Driving lincRNA Diversification: Lessons from Plants. PMID:27440919
HybPiper: Extracting coding sequence and introns for phylogenetics from high-throughput sequencing reads using target enrichment. PMID:27437175
Low-coverage, whole-genome sequencing of Artocarpus camansi (Moraceae) for phylogenetic marker development and gene discovery. PMID:27437173
A phylogenetic revision of Penicillium sect. Exilicaulis, including nine new species from fynbos in South Africa. PMID:27433442
New species of Elaphomyces (Elaphomycetaceae, Eurotiales, Ascomycota) from tropical rainforests of Cameroon and Guyana. PMID:27433441
Molecular and serological epidemiology of Japanese encephalitis virus (JEV) in a remote island of western Japan: an implication of JEV migration over the East China Sea. PMID:27433127
Silencing of natural transformation by an RNA chaperone and a multitarget small RNA. PMID:27432973
Geogenetic patterns in mouse lemurs (genus Microcebus) reveal the ghosts of Madagascar's forests past. PMID:27432945
Sequencing of the genus Arabidopsis identifies a complex history of nonbifurcating speciation and abundant trans-specific polymorphism. PMID:27428747
Lokiarchaeota Marks the Transition between the Archaeal and Eukaryotic Selenocysteine Encoding Systems. PMID:27413050
Conserved Noncoding Elements in the Most Distant Genera of Cephalochordates: The Goldilocks Principle. PMID:27412606
A new species of Pristimantis (Amphibia, Anura, Craugastoridae) from the foothills of the Andes in Manu National Park, southeastern Peru. PMID:27408563
A new, genetically divergent species of Pseudobaikalia Lindholm, 1909 (Caenogastropoda, Baicaliidae). PMID:27408549
Granopupa in Iran, monophyly, and the fossil Granariinae (Gastropoda, Pulmonata, Chondrinidae). PMID:27408543
Structural Determinants of Sleeping Beauty Transposase Activity. PMID:27401040
A putative species complex in the Sea of Japan revealed by DNA sequence data: a study on Lottia cf. kogamogai (Gastropoda: Patellogastropoda). PMID:27397971
Transcending the prediction paradigm: novel applications of SHAPE to RNA function and evolution. PMID:27396578
Glycoside Hydrolase (GH) 45 and 5 Candidate Cellulases in Aphelenchoides besseyi Isolated from Bird's-Nest Fern. PMID:27391812
Tissue-Specific Venom Composition and Differential Gene Expression in Sea Anemones. PMID:27389690
Genomic characterization of the uncultured Bacteroidales family S24-7 inhabiting the guts of homeothermic animals. PMID:27388460
The complete genome of the tospovirus Zucchini lethal chlorosis virus. PMID:27388209
LEON-BIS: multiple alignment evaluation of sequence neighbours using a Bayesian inference system. PMID:27387560
Endogenous Gibbon Ape Leukemia Virus Identified in a Rodent (Melomys burtoni subsp.) from Wallacea (Indonesia). PMID:27384662
AcsF Catalyzes the ATP-dependent Insertion of Nickel into the Ni,Ni-[4Fe4S] Cluster of Acetyl-CoA Synthase. PMID:27382049
The Heterodimeric ABC Transporter EfrCD Mediates Multidrug Efflux in Enterococcus faecalis. PMID:27381387
Complete Chloroplast Genome of Nicotiana otophora and its Comparison with Related Species. PMID:27379132
Ebola Virus Epidemiology and Evolution in Nigeria. PMID:27377746
Determination of optimal parameters of MAFFT program based on BAliBASE3.0 database. PMID:27376004
Complete plastid genome sequence of Primula sinensis (Primulaceae): structure comparison, sequence variation and evidence for accD transfer to nucleus. PMID:27375965
The draft genome of MD-2 pineapple using hybrid error correction of long reads. PMID:27374615
Breeding system diversification and evolution in American Poa supersect. Homalopoa (Poaceae: Poeae: Poinae). PMID:27373539
Species- and Strain-Specific Adaptation of the HSP70 Super Family in Pathogenic Trypanosomatids. PMID:27371955
Dietary specialization drives multiple independent losses and gains in the bitter taste gene repertoire of Laurasiatherian Mammals. PMID:27366197
Assembled Plastid and Mitochondrial Genomes, as well as Nuclear Genes, Place the Parasite Family Cynomoriaceae in the Saxifragales. PMID:27358425
Anchored enrichment dataset for true flies (order Diptera) reveals insights into the phylogeny of flower flies (family Syrphidae). PMID:27357120
Transcriptome sequencing and marker development in winged bean (Psophocarpus tetragonolobus; Leguminosae). PMID:27356763
Sequence Analysis of In Vivo-Expressed HIV-1 Spliced RNAs Reveals the Usage of New and Unusual Splice Sites by Viruses of Different Subtypes. PMID:27355361
Evolutionary inactivation of a sialidase in group B Streptococcus. PMID:27352769
Expanding the view on the evolution of the nematode dauer signalling pathways: refinement through gene gain and pathway co-option. PMID:27350342
Universal multiplexable matK primers for DNA barcoding of angiosperms. PMID:27347449
Mechanisms of increased Trichodesmium fitness under iron and phosphorus co-limitation in the present and future ocean. PMID:27346420
Demographic History of the Genus Pan Inferred from Whole Mitochondrial Genome Reconstructions. PMID:27345955
Molecular Evolution of the Oxygen-Binding Hemerythrin Domain. PMID:27336621
Novel Computational Protocols for Functionally Classifying and Characterising Serine Beta-Lactamases. PMID:27332861
Local versus Generalized Phenotypes in Two Sympatric Aurelia Species: Understanding Jellyfish Ecology Using Genetics and Morphometrics. PMID:27332545
Recruitment of Rod Photoreceptors from Short-Wavelength-Sensitive Cones during the Evolution of Nocturnal Vision in Mammals. PMID:27326930
Evolution of the EGFR pathway in Metazoa and its diversification in the planarian Schmidtea mediterranea. PMID:27325311
Pyrola japonica, a partially mycoheterotrophic Ericaceae, has mycorrhizal preference for russulacean fungi in central Japan. PMID:27323714
Comparative Protein Structure Modeling Using MODELLER. PMID:27322406
Studying RNA Homology and Conservation with Infernal: From Single Sequences to RNA Families. PMID:27322404
Duplication and Remolding of tRNA Genes in the Mitochondrial Genome of Reduvius tenebrosus (Hemiptera: Reduviidae). PMID:27322247
Insights into Symbiont Population Structure among Three Vestimentiferan Tubeworm Host Species at Eastern Pacific Spreading Centers. PMID:27316954
Human metapneumovirus epidemiological and evolutionary patterns in Coastal Kenya, 2007-11. PMID:27316548
Investigation of Amphibian Mortality Events in Wildlife Reveals an On-Going Ranavirus Epidemic in the North of the Netherlands. PMID:27315226
Chloroplast DNA Structural Variation, Phylogeny, and Age of Divergence among Diploid Cotton Species. PMID:27309527
Genetic characterization of human bocavirus among children with severe acute respiratory infection in China. PMID:27306487
Comparative Cell Biology and Evolution of Annexins in Diplomonads. PMID:27303715
Gene Loss and Horizontal Gene Transfer Contributed to the Genome Evolution of the Extreme Acidophile "Ferrovum". PMID:27303384
Identification of Plasmodium falciparum Translation Initiation eIF2β Subunit: Direct Interaction with Protein Phosphatase Type 1. PMID:27303372
The complete mitochondrial genomes of Gnathostoma doloresi from China and Japan. PMID:27301404
The Conserved Tetratricopeptide Repeat-Containing C-Terminal Domain of Pseudomonas aeruginosa FimV Is Required for Its Cyclic AMP-Dependent and -Independent Functions. PMID:27297880
A Phylogenetic Approach Finds Abundant Interlocus Gene Conversion in Yeast. PMID:27297467
Phylogenomic analyses of bat subordinal relationships based on transcriptome data. PMID:27291671
Architecture and RNA binding of the human negative elongation factor. PMID:27282391
Novel Hydrogenosomes in the Microaerophilic Jakobid Stygiella incarcerata. PMID:27280585
Identification and tissue expression profile of genes from three chemoreceptor families in an urban pest, Periplaneta americana. PMID:27279336
Environmental Breviatea harbour mutualistic Arcobacter epibionts. PMID:27279223
A real-time reverse transcriptase polymerase chain reaction for detection and quantification of Vesiculovirus. PMID:27276185
Evolution of High Cellulolytic Activity in Symbiotic Streptomyces through Selection of Expanded Gene Content and Coordinated Gene Expression. PMID:27276034
Reassortment compatibility between PB1, PB2, and HA genes of the two influenza B virus lineages in mammalian cells. PMID:27270757
Insights into the transcriptional and translational mechanisms of linear organellar chromosomes in the box jellyfish Alatina alata (Cnidaria: Medusozoa: Cubozoa). PMID:27267414
Comparative genomic and transcriptomic analyses of the Fuzhuan brick tea-fermentation fungus Aspergillus cristatus. PMID:27267057
Phylogenetically Diverse Burkholderia Associated with Midgut Crypts of Spurge Bugs, Dicranocephalus spp. (Heteroptera: Stenocephalidae). PMID:27265344
Integrative computational approach for genome-based study of microbial lipid-degrading enzymes. PMID:27263017
Whole Genome Duplications Shaped the Receptor Tyrosine Kinase Repertoire of Jawed Vertebrates. PMID:27260203
Transcriptome sequences spanning key developmental states as a resource for the study of the cestode Schistocephalus solidus, a threespine stickleback parasite. PMID:27259971
Bioinformatics analysis of the structural and evolutionary characteristics for toll-like receptor 15. PMID:27257554
Small RNA-Based Antiviral Defense in the Phytopathogenic Fungus Colletotrichum higginsianum. PMID:27253323
Recent Reticulate Evolution in the Ecologically Dominant Lineage of Coccolithophores. PMID:27252694
The industrial melanism mutation in British peppered moths is a transposable element. PMID:27251284
Transcriptome Analysis of Scrippsiella trochoidea CCMP 3099 Reveals Physiological Changes Related to Nitrate Depletion. PMID:27242681
A Plasma Membrane Association Module in Yeast Amino Acid Transporters. PMID:27226538
Comparative genomics explains the evolutionary success of reef-forming corals. PMID:27218454
Ectodomain Architecture Affects Sequence and Functional Evolution of Vertebrate Toll-like Receptors. PMID:27216145
Respiratory Syncytial Virus whole-genome sequencing identifies convergent evolution of sequence duplication in the C-terminus of the G gene. PMID:27212633
Eye on the B-ALL: B-cell receptor repertoires reveal persistence of numerous B-lymphoblastic leukemia subclones from diagnosis to relapse. PMID:27211266
Horizontal Gene Transfer of Pectinases from Bacteria Preceded the Diversification of Stick and Leaf Insects. PMID:27210832
Defining the SUMO System in Maize: SUMOylation Is Up-Regulated during Endosperm Development and Rapidly Induced by Stress. PMID:27208252
The Starch Granule-Associated Protein EARLY STARVATION1 Is Required for the Control of Starch Degradation in Arabidopsis thaliana Leaves. PMID:27207856
The floral transcriptomes of four bamboo species (Bambusoideae; Poaceae): support for common ancestry among woody bamboos. PMID:27206631
The influenza A virus NS genome segment displays lineage-specific patterns in predicted RNA secondary structure. PMID:27206548
Flashy flagella: flagellin modification is relatively common and highly versatile among the Enterobacteriaceae. PMID:27206480
Genome-Wide Identification and Characterization of WRKY Gene Family in Peanut. PMID:27200012
Genomic and Secondary Metabolite Analyses of Streptomyces sp. 2AW Provide Insight into the Evolution of the Cycloheximide Pathway. PMID:27199910
New species in the Sitalcina sura species group (Opiliones, Laniatores, Phalangodidae), with evidence for a biogeographic link between California desert canyons and Arizona sky islands. PMID:27199607
Bacterial β-Kdo glycosyltransferases represent a new glycosyltransferase family (GT99). PMID:27199480
Dimerization and Transactivation Domains as Candidates for Functional Modulation and Diversity of Sox9. PMID:27196604
Comparative Genomics of a Parthenogenesis-Inducing Wolbachia Symbiont. PMID:27194801
A cure for the blues: opsin duplication and subfunctionalization for short-wavelength sensitivity in jewel beetles (Coleoptera: Buprestidae). PMID:27193495
Heme pathway evolution in kinetoplastid protists. PMID:27193376
Repeated gains in yellow and anthocyanin pigmentation in flower colour transitions in the Antirrhineae. PMID:27192708
Bayesian Top-Down Protein Sequence Alignment with Inferred Position-Specific Gap Penalties. PMID:27192614
An Ancient Transkingdom Horizontal Transfer of Penelope-Like Retroelements from Arthropods to Conifers. PMID:27190138
Reinventing the Wheel and Making It Round Again: Evolutionary Convergence in Buchnera-Serratia Symbiotic Consortia between the Distantly Related Lachninae Aphids Tuberolachnus salignus and Cinara cedri. PMID:27190007
Conserved Features in the Structure, Mechanism, and Biogenesis of the Inverse Autotransporter Protein Family. PMID:27190006
Capturing the Phylogeny of Holometabola with Mitochondrial Genome Data and Bayesian Site-Heterogeneous Mixture Models. PMID:27189999
Ancient Eukaryotic Origin and Evolutionary Plasticity of Nuclear Lamina. PMID:27189989
The Small Nuclear Genomes of Selaginella Are Associated with a Low Rate of Genome Size Evolution. PMID:27189987
DnaK-Dependent Accelerated Evolutionary Rate in Prokaryotes. PMID:27189986
Opsin Repertoire and Expression Patterns in Horseshoe Crabs: Evidence from the Genome of Limulus polyphemus (Arthropoda: Chelicerata). PMID:27189985
The Unicellular Ancestry of Groucho-Mediated Repression and the Origins of Metazoan Transcription Factors. PMID:27189982
Genome sequence and comparative analysis of clavicipitaceous insect-pathogenic fungus Aschersonia badia with Metarhizium spp. PMID:27189621
Evolutionary Consequences of DNA Methylation in a Basal Metazoan. PMID:27189563
Phylo.io: Interactive Viewing and Comparison of Large Phylogenetic Trees on the Web. PMID:27189561
Phylogenetic and Genomic Analyses Resolve the Origin of Important Plant Genes Derived from Transposable Elements. PMID:27189548
Seasonal Succession of Fungi Associated with Ips typographus Beetles and Their Phoretic Mites in an Outbreak Region of Finland. PMID:27187192
PHASTpep: Analysis Software for Discovery of Cell-Selective Peptides via Phage Display and Next-Generation Sequencing. PMID:27186887
Rearrangement of mitochondrial tRNA genes in flat bugs (Hemiptera: Aradidae). PMID:27180804
Genetic admixture and lineage separation in a southern Andean plant. PMID:27179539
Comparative Mitogenomics of Leeches (Annelida: Clitellata): Genome Conservation and Placobdella-Specific trnD Gene Duplication. PMID:27176910
An RNA-dependent RNA polymerase gene in bat genomes derived from an ancient negative-strand RNA virus. PMID:27174689
Evaluating the Utility of Single-Locus DNA Barcoding for the Identification of Ribbon Worms (Phylum Nemertea). PMID:27171471
What is Atraphaxis L. (Polygonaceae, Polygoneae): cryptic taxa and resolved taxonomic complexity instead of the formal lumping and the lack of morphological synapomorphies. PMID:27168986
Systematics of stalked jellyfishes (Cnidaria: Staurozoa). PMID:27168970
Extracting functional trends from whole genome duplication events using comparative genomics. PMID:27168732
Two UV-Sensitive Photoreceptor Proteins, Opn5m and Opn5m2 in Ray-Finned Fish with Distinct Molecular Properties and Broad Distribution in the Retina and Brain. PMID:27167972
ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules. PMID:27166375
Punctuated evolution and transitional hybrid network in an ancestral cell cycle of fungi. PMID:27162172
DNA methylation changes facilitated evolution of genes derived from Mutator-like transposable elements. PMID:27154274
A simple method to control over-alignment in the MAFFT multiple sequence alignment program. PMID:27153688
Comparative Genomic Analysis of Drechmeria coniospora Reveals Core and Specific Genetic Requirements for Fungal Endoparasitism of Nematodes. PMID:27153332
Genome Sequencing and Comparative Analysis of Saccharomyces cerevisiae Strains of the Peterhof Genetic Collection. PMID:27152522
Multilocus phylogenetic analyses reveal unexpected abundant diversity and significant disjunct distribution pattern of the Hedgehog Mushrooms (Hydnum L.). PMID:27151256
Protist-Bacteria Associations: Gammaproteobacteria and Alphaproteobacteria Are Prevalent as Digestion-Resistant Bacteria in Ciliated Protozoa. PMID:27148188
Unexpected Interfarm Transmission Dynamics during a Highly Pathogenic Avian Influenza Epidemic. PMID:27147741
Benzenoid biosynthesis in the flowers of Eriobotrya japonica: molecular cloning and functional characterization of p-methoxybenzoic acid carboxyl methyltransferase. PMID:27146420
Single-Cell Genome and Group-Specific dsrAB Sequencing Implicate Marine Members of the Class Dehalococcoidia (Phylum Chloroflexi) in Sulfur Cycling. PMID:27143384
Ostreococcus tauri is a new model green alga for studying iron metabolism in eukaryotic phytoplankton. PMID:27142620
Type III polyketide synthase repertoire in Zingiberaceae: computational insights into the sequence, structure and evolution. PMID:27138283
Functional Sites Induce Long-Range Evolutionary Constraints in Enzymes. PMID:27138088
InterEvDock: a docking server to predict the structure of protein-protein interactions using evolutionary information. PMID:27131368
Identification and analysis of integrons and cassette arrays in bacterial genomes. PMID:27130947
Ancestral genome reconstruction identifies the evolutionary basis for trait acquisition in polyphosphate accumulating bacteria. PMID:27128993
Plastome data reveal multiple geographic origins of Quercus Group Ilex. PMID:27123376
Complete genomes of Hairstreak butterflies, their speciation, and nucleo-mitochondrial incongruence. PMID:27120974
Comparative Phylogeography Reveals Cryptic Diversity and Repeated Patterns of Cladogenesis for Amphibians and Reptiles in Northwestern Ecuador. PMID:27120100
Next Generation Sequencing Identifies Five Major Classes of Potentially Therapeutic Enzymes Secreted by Lucilia sericata Medical Maggots. PMID:27119084
Atypical Clinical Presentation of Sporotrichosis Caused by Sporothrix globosa Resistant to Itraconazole. PMID:27114300
Divergent bufavirus harboured in megabats represents a new lineage of parvoviruses. PMID:27113297
The logic of DNA replication in double-stranded DNA viruses: insights from global analysis of viral genomes. PMID:27112572
X-Ray Crystal Structure of the Full Length Human Chitotriosidase (CHIT1) Reveals Features of Its Chitin Binding Domain. PMID:27111557
Companion: a web server for annotation and analysis of parasite genomes. PMID:27105845
Genome Sequence of the Tick-Borne Pathogen Rickettsia raoultii. PMID:27103706
Integrated sequence and immunology filovirus database at Los Alamos. PMID:27103629
Ancient horizontal transfers of retrotransposons between birds and ancestors of human pathogenic nematodes. PMID:27097561
The Ancient Evolutionary History of Polyomaviruses. PMID:27093155
Insights from the Genome Sequence of Acidovorax citrulli M6, a Group I Strain of the Causal Agent of Bacterial Fruit Blotch of Cucurbits. PMID:27092114
Astrovirus MLB2, a New Gastroenteric Virus Associated with Meningitis and Disseminated Infection. PMID:27088842
The Atlantic salmon genome provides insights into rediploidization. PMID:27088604
Pseudocospeciation of the mycoparasite Cosmospora with their fungal hosts. PMID:27087926
Decoupled genomic elements and the evolution of partner quality in nitrogen-fixing rhizobia. PMID:27087920
Copper-responsive gene expression in the methanotroph Methylosinus trichosporium OB3b. PMID:27087171
The Complete Female- and Male-Transmitted Mitochondrial Genome of Meretrix lamarckii. PMID:27083010
Species boundaries in plant pathogenic fungi: a Colletotrichum case study. PMID:27080690
In vitro system using human neurons demonstrates that varicella-zoster vaccine virus is impaired for reactivation, but not latency. PMID:27078099
Characterization of Greenbeard Genes Involved in Long-Distance Kind Discrimination in a Microbial Eukaryote. PMID:27077707
Novel Taxa Associated with Human Fungal Black-Grain Mycetomas: Emarellia grisea gen. nov., sp. nov., and Emarellia paragrisea sp. nov. PMID:27076666
Evolutionary diversification of retinoic acid receptor ligand-binding pocket structure by molecular tinkering. PMID:27069642
Diversification and coevolution of the ghrelin/growth hormone secretagogue receptor system in vertebrates. PMID:27066235
Differential Expression Analysis of Chemoreception Genes in the Striped Flea Beetle Phyllotreta striolata Using a Transcriptomic Approach. PMID:27064483
FAM46 proteins are novel eukaryotic non-canonical poly(A) polymerases. PMID:27060136
Medulloblastoma-associated DDX3 variant selectively alters the translational response to stress. PMID:27058758
Geological Changes of the Americas and their Influence on the Diversification of the Neotropical Kissing Bugs (Hemiptera: Reduviidae: Triatominae). PMID:27058599
Cache Domains That are Homologous to, but Different from PAS Domains Comprise the Largest Superfamily of Extracellular Sensors in Prokaryotes. PMID:27049771
Lateral Gene Transfer in a Heavy Metal-Contaminated-Groundwater Microbial Community. PMID:27048805
The Complete Chloroplast Genome Sequence of Ampelopsis: Gene Organization, Comparative Analysis, and Phylogenetic Relationships to Other Angiosperms. PMID:27047519
Identification and Partial Characterization of a Novel UDP-N-Acetylenolpyruvoylglucosamine Reductase/UDP-N-Acetylmuramate:l-Alanine Ligase Fusion Enzyme from Verrucomicrobium spinosum DSM 4136(T). PMID:27047475
Genome-Wide Analysis of Human Metapneumovirus Evolution. PMID:27046055
Test of the invasive pathogen hypothesis of bumble bee decline in North America. PMID:27044096
Evolution of Philodendron (Araceae) species in Neotropical biomes. PMID:27042390
Escape from the cryptic species trap: lichen evolution on both sides of a cyanobacterial acquisition event. PMID:27037681
Horizontally acquired genes in early-diverging pathogenic fungi enable the use of host nucleosides and nucleotides. PMID:27035945
HOX gene complement and expression in the planarian Schmidtea mediterranea. PMID:27034770
Are There Rab GTPases in Archaea? PMID:27034425
Evidence-based green algal genomics reveals marine diversity and ancestral characteristics of land plants. PMID:27029936
Evolutionary Relationships and Biogeography of the Ant-Epiphytic Genus Squamellaria (Rubiaceae: Psychotrieae) and Their Taxonomic Implications. PMID:27028599
VIP: an integrated pipeline for metagenomics of virus identification and discovery. PMID:27026381
Resolving the Phylogenetic Position of Coelacanth: The Closest Relative Is Not Always the Most Appropriate Outgroup. PMID:27026053
Reconstructing the evolutionary history of gypsy retrotransposons in the Périgord black truffle (Tuber melanosporum Vittad.). PMID:27025914
Identification of a new hominin bone from Denisova Cave, Siberia using collagen fingerprinting and mitochondrial DNA analysis. PMID:27020421
Anaplasma phagocytophilum increases the levels of histone modifying enzymes to inhibit cell apoptosis and facilitate pathogen infection in the tick vector Ixodes scapularis. PMID:27019326
Independent and Parallel Evolution of New Genes by Gene Duplication in Two Origins of C4 Photosynthesis Provides New Insight into the Mechanism of Phloem Loading in C4 Species. PMID:27016024
Characterization of a Plasmodium falciparum Orthologue of the Yeast Ubiquinone-Binding Protein, Coq10p. PMID:27015086
Genomic Insights into a New Citrobacter koseri Strain Revealed Gene Exchanges with the Virulence-Associated Yersinia pestis pPCP1 Plasmid. PMID:27014253
Marine-derived fungus Aspergillus cf. tubingensis LAMAI 31: a new genetic resource for xylanase production. PMID:27009074
Taxonomic revision of the tarantula genus Aphonopelma Pocock, 1901 (Araneae, Mygalomorphae, Theraphosidae) within the United States. PMID:27006611
Drusus sharrensis sp. n. (Trichoptera, Limnephilidae), a new species from Sharr National Park in Kosovo, with molecular and ecological notes. PMID:27006607
High Diversity Revealed in Leaf-Associated Protists (Rhizaria: Cercozoa) of Brassicaceae. PMID:27005328
Genome-wide analysis of ionotropic receptors provides insight into their evolution in Heliconius butterflies. PMID:27004525
Phylogenomics of a rapid radiation: is chromosomal evolution linked to increased diversification in north american spiny lizards (Genus Sceloporus)? PMID:27000803
Antimicrobial Combinations against Pan-Resistant Acinetobacter baumannii Isolates with Different Resistance Mechanisms. PMID:26998609
Müller glia reactivity follows retinal injury despite the absence of the glial fibrillary acidic protein gene in Xenopus. PMID:26996101
Expression and characterization of the SOS1 Arabidopsis salt tolerance protein. PMID:26992907
Development of broad-spectrum human monoclonal antibodies for rabies post-exposure prophylaxis. PMID:26992832
A new species of Psychrophrynella (Amphibia, Anura, Craugastoridae) from the humid montane forests of Cusco, eastern slopes of the Peruvian Andes. PMID:26989637
High-performance integrated virtual environment (HIVE): a robust infrastructure for next-generation sequence data analysis. PMID:26989153
RUDI, a short interspersed element of the V-SINE superfamily widespread in molluscan genomes. PMID:26987730
The complete mitochondrial genome of Gasterophilus intestinalis, the first representative of the family Gasterophilidae. PMID:26987644
Evolution of Pentameric Ligand-Gated Ion Channels: Pro-Loop Receptors. PMID:26986966
Molecular Characterization of Human Atypical Sorbitol-Fermenting Enteropathogenic Escherichia coli O157 Reveals High Diversity. PMID:26984976
Origin of B chromosomes in the genus Astyanax (Characiformes, Characidae) and the limits of chromosome painting. PMID:26984341
Divergent polo box domains underpin the unique kinetoplastid kinetochore. PMID:26984294
Nuclear DNA sequences from the Middle Pleistocene Sima de los Huesos hominins. PMID:26976447
Global MLST of Salmonella Typhi Revisited in Post-genomic Era: Genetic Conservation, Population Structure, and Comparative Genomics of Rare Sequence Types. PMID:26973639
Fungi Contribute Critical but Spatially Varying Roles in Nitrogen and Carbon Cycling in Acid Mine Drainage. PMID:26973616
Revisiting phylogenetic diversity and cryptic species of Cenococcum geophilum sensu lato. PMID:26968743
Monogenean anchor morphometry: systematic value, phylogenetic signal, and evolution. PMID:26966649
Genome-wide analysis identifies gain and loss/change of function within the small multigenic insecticidal Albumin 1 family of Medicago truncatula. PMID:26964738
Unbiased Characterization of Anopheles Mosquito Blood Meals by Targeted High-Throughput Sequencing. PMID:26963245
Ecological genomics of mutualism decline in nitrogen-fixing bacteria. PMID:26962142
Human symbionts inject and neutralize antibacterial toxins to persist in the gut. PMID:26957597
Protecting Free-Living Dormice: Molecular Identification of Cestode Parasites in Captive Dormice (Muscardinus avellanarius) Destined for Reintroduction. PMID:26957436
Resolving the Phoma enigma. PMID:26955202
Multigene phylogeny and taxonomic revision of yeasts and related fungi in the Ustilaginomycotina. PMID:26955198
Phylogeny of yeasts and related filamentous fungi within Pucciniomycotina determined from multigene sequence analyses. PMID:26955197
Phylogeny of tremellomycetous yeasts and related dimorphic and filamentous basidiomycetes reconstructed from multiple gene sequence analyses. PMID:26955196
Generic concepts in Nectriaceae. PMID:26955195
New species, hyper-diversity and potential importance of Calonectria spp. from Eucalyptus in South China. PMID:26955194
Novel taxa in the Fusarium fujikuroi species complex from Pinus spp. PMID:26955193
Diversity and potential impact of Calonectria species in Eucalyptus plantations in Brazil. PMID:26955192
Long-term surveillance of H7 influenza viruses in American wild aquatic birds: are the H7N3 influenza viruses in wild birds the precursors of highly pathogenic strains in domestic poultry? PMID:26954883
Local diversity of heathland Cercozoa explored by in-depth sequencing. PMID:26953604
Population genomics reveals that within-fungus polymorphism is common and maintained in populations of the mycorrhizal fungus Rhizophagus irregularis. PMID:26953600
Nucleotide sequence of Zygosaccharomyces bailii virus Z: Evidence for +1 programmed ribosomal frameshifting and for assignment to family Amalgaviridae. PMID:26951859
Speciation in Cloudless Sulphurs Gleaned from Complete Genomes. PMID:26951782
Phylogenetic classification of yeasts and related taxa within Pucciniomycotina. PMID:26951631
Evolutionary origin of Rosaceae-specific active non-autonomous hAT elements and their contribution to gene regulation and genomic structural variation. PMID:26941188
Mitochondrial coding genome analysis of tropical root-knot nematodes (Meloidogyne) supports haplotype based diagnostics and reveals evidence of recent reticulate evolution. PMID:26940543
Evaluating the Phylogenetic Status of the Extinct Japanese Otter on the Basis of Mitochondrial Genome Analysis. PMID:26938434
Divergence Times and Phylogenetic Patterns of Sebacinales, a Highly Diverse and Widespread Fungal Lineage. PMID:26938104
Molecular Evolutionary Dynamics of Respiratory Syncytial Virus Group A in Recurrent Epidemics in Coastal Kenya. PMID:26937038
Beyond sodefrin: evidence for a multi-component pheromone system in the model newt Cynops pyrrhogaster (Salamandridae). PMID:26935790
Expression Atlas of the Deubiquitinating Enzymes in the Adult Mouse Retina, Their Evolutionary Diversification and Phenotypic Roles. PMID:26934049
Genome sequences of Knoxdaviesia capensis and K. proteae (Fungi: Ascomycota) from Protea trees in South Africa. PMID:26933475
Organization and characteristics of the major histocompatibility complex class II region in the Yangtze finless porpoise (Neophocaena asiaeorientalis asiaeorientalis). PMID:26932528
Identification of a Latin American-specific BabA adhesin variant through whole genome sequencing of Helicobacter pylori patient isolates from Nicaragua. PMID:26928576
Drastic underestimation of amphipod biodiversity in the endangered Irano-Anatolian and Caucasus biodiversity hotspots. PMID:26928527
Hologenome analysis of two marine sponges with different microbiomes. PMID:26926518
Comparative Genomic Analysis of Mannheimia haemolytica from Bovine Sources. PMID:26926339
Cyanobacteria and the Great Oxidation Event: evidence from genes and fossils. PMID:26924853
Prediction of G protein-coupled receptor encoding sequences from the synganglion transcriptome of the cattle tick, Rhipicephalus microplus. PMID:26922323
Flux Control in Glycolysis Varies Across the Tree of Life. PMID:26920685
Structure of a truncated form of leucine zipper II of JIP3 reveals an unexpected antiparallel coiled-coil arrangement. PMID:26919523
Architecture of the light-harvesting apparatus of the eustigmatophyte alga Nannochloropsis oceanica. PMID:26913864
Quantification of Cooperativity in Heterodimer-DNA Binding Improves the Accuracy of Binding Specificity Models. PMID:26912662
Design and Characterization of a Computationally Optimized Broadly Reactive Hemagglutinin Vaccine for H1N1 Influenza Viruses. PMID:26912624
topIb, a phylogenetic hallmark gene of Thaumarchaeota encodes a functional eukaryote-like topoisomerase IB. PMID:26908651
The genome of the miiuy croaker reveals well-developed innate immune and sensory systems. PMID:26902509
Actinobacteria Isolated from an Underground Lake and Moonmilk Speleothem from the Biggest Conglomeratic Karstic Cave in Siberia as Sources of Novel Biologically Active Compounds. PMID:26901168
Identification of an HIV-1 BG Intersubtype Recombinant Form (CRF73_BG), Partially Related to CRF14_BG, Which Is Circulating in Portugal and Spain. PMID:26900693
Crystal structure of equine serum albumin in complex with cetirizine reveals a novel drug binding site. PMID:26896718
Coevolution between Nuclear-Encoded DNA Replication, Recombination, and Repair Genes and Plastid Genome Complexity. PMID:26893456
An effective approach for annotation of protein families with low sequence similarity and conserved motifs: identifying GDSL hydrolases across the plant kingdom. PMID:26892257
Establishing the precise evolutionary history of a gene improves prediction of disease-causing missense mutations. PMID:26890452
Comparative genomics of mitochondria in chlorarachniophyte algae: endosymbiotic gene transfer and organellar genome dynamics. PMID:26888293
Seqotron: a user-friendly sequence editor for Mac OS X. PMID:26887850
Moramonas marocensis gen. nov., sp. nov.: a jakobid flagellate isolated from desert soil with a bacteria-like, but bloated mitochondrial genome. PMID:26887409
The role of pollinators in the evolution of corolla shape variation, disparity and integration in a highly diversified plant family with a conserved floral bauplan. PMID:26884512
S1 gene-based phylogeny of infectious bronchitis virus: An attempt to harmonize virus classification. PMID:26883378
Comparative and phylogenetic analysis of the mitochondrial genomes in basal hymenopterans. PMID:26879745
A new monster from southwest Oregon forests: Cryptomaster behemoth sp. n. (Opiliones, Laniatores, Travunioidea). PMID:26877685
A new quadrannulate species of Orobdella (Hirudinida, Arhynchobdellida, Orobdellidae) from western Honshu, Japan. PMID:26877670
A Comparative Analysis of Mitochondrial Genomes in Eustigmatophyte Algae. PMID:26872774
The Epigenomic Landscape of Prokaryotes. PMID:26870957
Global Analysis of WRKY Genes and Their Response to Dehydration and Salt Stress in Soybean. PMID:26870047
Taxonomist's Nightmare … Evolutionist's Delight : An Integrative Approach Resolves Species Limits in Jumping Bristletails Despite Widespread Hybridization and Parthenogenesis. PMID:26869489
Molecular epidemiological tracing of a cattle rabies outbreak lasting less than a month in Rio Grande do Sul in southern Brazil. PMID:26868014
Transcriptomic identification of starfish neuropeptide precursors yields new insights into neuropeptide evolution. PMID:26865025
Tofla virus: A newly identified Nairovirus of the Crimean-Congo hemorrhagic fever group isolated from ticks in Japan. PMID:26863911
Metagenomic Analysis Indicates Epsilonproteobacteria as a Potential Cause of Microbial Corrosion in Pipelines Injected with Bisulfite. PMID:26858705
Sequence diversity between class I MHC loci of African native and introduced Bos taurus cattle in Theileria parva endemic regions: in silico peptide binding prediction identifies distinct functional clusters. PMID:26852329
Evolution of VRN2/Ghd7-Like Genes in Vernalization-Mediated Repression of Grass Flowering. PMID:26848096
A new species of Docosia Winnertz from Central Europe, with DNA barcoding based on four gene markers (Diptera, Mycetophilidae). PMID:26843833
Courtship Pheromone Use in a Model Urodele, the Mexican Axolotl (Ambystoma mexicanum). PMID:26842386
Complete Mitochondrial Genome of Three Bactrocera Fruit Flies of Subgenus Bactrocera (Diptera: Tephritidae) and Their Phylogenetic Implications. PMID:26840430
Novel origin of lamin-derived cytoplasmic intermediate filaments in tardigrades. PMID:26840051
Four New Species of Amanita in Inje County, Korea. PMID:26839500
Major bacterial lineages are essentially devoid of CRISPR-Cas viral defence systems. PMID:26837824
A paneukaryotic genomic analysis of the small GTPase RABL2 underscores the significance of recurrent gene loss in eukaryote evolution. PMID:26832778
A Phylogenomic Approach Based on PCR Target Enrichment and High Throughput Sequencing: Resolving the Diversity within the South American Species of Bartsia L. (Orobanchaceae). PMID:26828929
Partial restoration of the microbiota of cesarean-born infants via vaginal microbial transfer. PMID:26828196
Long-Term Persistence of Bi-functionality Contributes to the Robustness of Microbial Life through Exaptation. PMID:26824644
Large-scale diversification without genetic isolation in nematode symbionts of figs. PMID:26824073
Decrypting the Hebeloma crustuliniforme complex: European species of Hebeloma section Denudata subsection Denudata (Agaricales). PMID:26823631
Unravelling Colletotrichum species associated with Camellia: employing ApMat and GS loci to resolve species in the C. gloeosporioides complex. PMID:26823629
Phylogeography and evolutionary patterns in Sporothrix spanning more than 14 000 human and animal case reports. PMID:26823625
Comparison of Target-Capture and Restriction-Site Associated DNA Sequencing for Phylogenomics: A Test in Cardinalid Tanagers (Aves, Genus: Piranga). PMID:26821912
Primers for low-copy nuclear genes in the Melastomataceae. PMID:26819862
Revisiting the Zingiberales: using multiplexed exon capture to resolve ancient and recent phylogenetic splits in a charismatic plant lineage. PMID:26819846
Cryptosporidium galli and novel Cryptosporidium avian genotype VI in North American red-winged blackbirds (Agelaius phoeniceus). PMID:26818945
Reference genes for accessing differential expression among developmental stages and analysis of differential expression of OBP genes in Anastrepha obliqua. PMID:26818909
Tetrapod V1R-like ora genes in an early-diverging ray-finned fish species: the canonical six ora gene repertoire of teleost fish resulted from gene loss in a larger ancestral repertoire. PMID:26818853
Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs. PMID:26814032
Expression of the Retrotransposon Helena Reveals a Complex Pattern of TE Deregulation in Drosophila Hybrids. PMID:26812285
Molecular analyses of H3N2 canine influenza viruses isolated from Korea during 2013-2014. PMID:26810402
Genome Sequence and Analysis of Escherichia coli MRE600, a Colicinogenic, Nonmotile Strain that Lacks RNase I and the Type I Methyltransferase, EcoKI. PMID:26802429
The Salmonella In Silico Typing Resource (SISTR): An Open Web-Accessible Tool for Rapidly Typing and Subtyping Draft Salmonella Genome Assemblies. PMID:26800248
New contributions to the molecular systematics and the evolution of host-plant associations in the genus Chrysolina (Coleoptera, Chrysomelidae, Chrysomelinae). PMID:26798320
Systematics of Nothopsini (Serpentes, Dipsadidae), with a new species of Synophis from the Pacific Andean slopes of southwestern Ecuador. PMID:26798284
Just a Flexible Linker? The Structural and Dynamic Properties of CBP-ID4 Revealed by NMR Spectroscopy. PMID:26789760
Biogeographic barriers drive co-diversification within associated eukaryotes of the Sarracenia alata pitcher plant system. PMID:26788436
Molecular Characterization Reveals Diverse and Unknown Malaria Vectors in the Western Kenyan Highlands. PMID:26787150
Evolution of the fish heart by sub/neofunctionalization of an elastin gene. PMID:26783159
The Phenotypic and Genetic Underpinnings of Flower Size in Polemoniaceae. PMID:26779209
High Diversity of Anaerobic Alkane-Degrading Microbial Communities in Marine Seep Sediments Based on (1-methylalkyl)succinate Synthase Genes. PMID:26779166
A Phylogenomic Analysis of the Bacterial Phylum Fibrobacteres. PMID:26779135
Time dependence of evolutionary metrics during the 2009 pandemic influenza virus outbreak. PMID:26770819
Host-Specific and Segment-Specific Evolutionary Dynamics of Avian and Human Influenza A Viruses: A Systematic Review. PMID:26760775
Linear Plasmids and the Rate of Sequence Evolution in Plant Mitochondrial Genomes. PMID:26759362
Analysis of TcdB Proteins within the Hypervirulent Clade 2 Reveals an Impact of RhoA Glucosylation on Clostridium difficile Proinflammatory Activities. PMID:26755157
Genomic analysis of 38 Legionella species identifies large and diverse effector repertoires. PMID:26752266
A New High-Throughput Approach to Genotype Ancient Human Gastrointestinal Parasites. PMID:26752051
Metacommunity analysis of amoeboid protists in grassland soils. PMID:26750872
Carbon dioxide receptor genes and their expression profile in Diabrotica virgifera virgifera. PMID:26746870
Macroevolution of hyperdiverse flightless beetles reflects the complex geological history of the Sunda Arc. PMID:26742575
Descriptions of two new species of Rhizorhina Hansen, 1892 (Copepoda: Siphonostomatoida: Nicothoidae) parasitic on tanaidacean crustaceans, with a note on their phylogenetic position. PMID:26739287
Baobabopsis, a new genus of graminicolous downy mildews from tropical Australia, with an updated key to the genera of downy mildews. PMID:26734551
Microcyclic rusts of hollyhock ( Alcea rosea ). PMID:26734550
Knoxdaviesia proteae is not the only Knoxdaviesia-symbiont of Protea repens. PMID:26734549
Phylogenetic placement of Itajahya: An unusual Jacaranda fungal associate. PMID:26734541
Mitochondrial genome evolution and tRNA truncation in Acariformes mites: new evidence from eriophyoid mites. PMID:26732998
The recent ancestry of Middle East respiratory syndrome coronavirus in Korea has been shaped by recombination. PMID:26732651
New sequestrate fungi from Guyana: Jimtrappea guyanensis gen. sp. nov., Castellanea pakaraimophila gen. sp. nov., and Costatisporus cyanescens gen. sp. nov. (Boletaceae, Boletales). PMID:26732137
Dividing the Large Glycoside Hydrolase Family 43 into Subfamilies: a Motivation for Detailed Enzyme Characterization. PMID:26729713
Neuropeptidergic Signaling in the American Lobster Homarus americanus: New Insights from High-Throughput Nucleotide Sequencing. PMID:26716450
Phylogeny Inference of Closely Related Bacterial Genomes: Combining the Features of Both Overlapping Genes and Collinear Genomic Regions. PMID:26715828
Genome-wide analysis of excretory/secretory proteins in Echinococcus multilocularis: insights into functional characteristics of the tapeworm secretome. PMID:26715441
Exploring a Nonmodel Teleost Genome Through RAD Sequencing-Linkage Mapping in Common Pandora, Pagellus erythrinus and Comparative Genomic Analysis. PMID:26715088
KIAA0556 is a novel ciliary basal body component mutated in Joubert syndrome. PMID:26714646
ISC, a Novel Group of Bacterial and Archaeal DNA Transposons That Encode Cas9 Homologs. PMID:26712934
Evolutionary loss of peroxisomes--not limited to parasites. PMID:26700421
Bacterial Diversity and Mycotoxin Reduction During Maize Fermentation (Steeping) for Ogi Production. PMID:26697001
Rapid Identification of Emerging Human-Pathogenic Sporothrix Species with Rolling Circle Amplification. PMID:26696992
Evidence of widespread natural recombination among field isolates of equine herpesvirus 4 but not among field isolates of equine herpesvirus 1. PMID:26691326
VHICA, a New Method to Discriminate between Vertical and Horizontal Transposon Transfer: Application to the Mariner Family within Drosophila. PMID:26685176
g-FLUA2H: a web-based application to study the dynamics of animal-to-human mutation transmission for influenza viruses. PMID:26680743
A computational method for identification of vaccine targets from protein regions of conserved human leukocyte antigen binding. PMID:26679766
A comprehensive comparison of general RNA-RNA interaction prediction methods. PMID:26673718
MycoCAP - Mycobacterium Comparative Analysis Platform. PMID:26666970
The complete mitochondrial genome of the dwarf tapeworm Hymenolepis nana--a neglected zoonotic helminth. PMID:26666886
Wolbachia distribution in selected beetle taxa characterized by PCR screens and MLST data. PMID:26664683
Multiplex PCR and Microarray for Detection of Swine Respiratory Pathogens. PMID:26662640
Burkholderia of Plant-Beneficial Group are Symbiotically Associated with Bordered Plant Bugs (Heteroptera: Pyrrhocoroidea: Largidae). PMID:26657305
Congruent Deep Relationships in the Grape Family (Vitaceae) Based on Sequences of Chloroplast Genomes and Mitochondrial Genes via Genome Skimming. PMID:26656830
Genomic legacy of the African cheetah, Acinonyx jubatus. PMID:26653294
Mitochondrial group I and group II introns in the sponge orders Agelasida and Axinellida. PMID:26653218
Genome-wide analysis of the basic leucine zipper (bZIP) transcription factor gene family in six legume genomes. PMID:26651343
Unexpected diversity of Anopheles species in Eastern Zambia: implications for evaluating vector behavior and interventions using molecular tools. PMID:26648001
Comparative genomics of Pseudomonas fluorescens subclade III strains from human lungs. PMID:26644001
Phylogenetic inference and SSR characterization of tropical woody bamboos tribe Bambuseae (Poaceae: Bambusoideae) based on complete plastid genome sequences. PMID:26643654
Saprophytic and pathogenic fungi in the Ceratocystidaceae differ in their ability to metabolize plant-derived sucrose. PMID:26643441
Phylogenetics reveals the crustacean order Amphionidacea to be larval shrimps (Decapoda: Caridea). PMID:26642937
Repairing oxidized proteins in the bacterial envelope using respiratory chain electrons. PMID:26641313
Evolution of Helicobacter: Acquisition by Gastric Species of Two Histidine-Rich Proteins Essential for Colonization. PMID:26641249
Cloning and Functional Characterization of Two BTB Genes in the Predatory Mite Metaseiulus occidentalis. PMID:26640898
Genomic and Functional Characterization of the Unusual pLOCK 0919 Plasmid Harboring the spaCBA Pili Cluster in Lactobacillus casei LOCK 0919. PMID:26637469
Episodic Diversifying Selection Shaped the Genomes of Gibbon Ape Leukemia Virus and Related Gammaretroviruses. PMID:26637454
Exploring the Antibacterial and Antifungal Potential of Jellyfish-Associated Marine Fungi by Cultivation-Dependent Approaches. PMID:26637162
Comparative Analysis of Secretomes from Ectomycorrhizal Fungi with an Emphasis on Small-Secreted Proteins. PMID:26635749
Defining the Schistosoma haematobium kinome enables the prediction of essential kinases as anti-schistosome drug targets. PMID:26635209
Deep sequencing analysis of the heterogeneity of seed and commercial lots of the bacillus Calmette-Guérin (BCG) tuberculosis vaccine substrain Tokyo-172. PMID:26635118
A phylogenetically distinct Middle East respiratory syndrome coronavirus detected in a dromedary calf from a closed dairy herd in Dubai with rising seroprevalence with age. PMID:26632876
Genomic Patterns of Positive Selection at the Origin of Rust Fungi. PMID:26632820
Dynamic sensitivity and nonlinear interactions influence the system-level evolutionary patterns of phototransduction proteins. PMID:26631565
A role for palindromic structures in the cis-region of maize Sirevirus LTRs in transposable element evolution and host epigenetic response. PMID:26631490
New records for the Kosovo caddisfly fauna with the description of a new species, Drusus dardanicus sp. nov. (Trichoptera: Limnephilidae). PMID:26624385
Molecular Diagnosis of Pathogenic Sporothrix Species. PMID:26623643
Exploring molecular variation in Schistosoma japonicum in China. PMID:26621075
A unique species in Phytophthora clade 10, Phytophthora intercalaris sp. nov., recovered from stream and irrigation water in the eastern USA. PMID:26620125
Spintharus flavidus in the Caribbean-a 30 million year biogeographical history and radiation of a 'widespread species'. PMID:26618089
Phylogenetic analysis of higher-level relationships within Hydroidolina (Cnidaria: Hydrozoa) using mitochondrial genome data and insight into their mitochondrial transcription. PMID:26618080
Comparative Genomic Insights into Ecophysiology of Neutrophilic, Microaerophilic Iron Oxidizing Bacteria. PMID:26617599
Red clover (Trifolium pratense L.) draft genome provides a platform for trait improvement. PMID:26617401
Infection prevalence of Sodalis symbionts among stinkbugs. PMID:26605050
Phylogeny and Phylogeography of a Recent HIV-1 Subtype F Outbreak among Men Who Have Sex with Men in Spain Deriving from a Cluster with a Wide Geographic Circulation in Western Europe. PMID:26599410
Autoinhibitory Interdomain Interactions and Subfamily-specific Extensions Redefine the Catalytic Core of the Human DEAD-box Protein DDX3. PMID:26598523
Discovery and Functional Characterization of Diverse Class 2 CRISPR-Cas Systems. PMID:26593719
FunTree: advances in a resource for exploring and contextualising protein function evolution. PMID:26590404
Evolution of disorder in Mediator complex and its functional relevance. PMID:26590257
Regional differentiation and extensive hybridization between mitochondrial clades of the Southern Ocean giant sea spider Colossendeis megalonyx. PMID:26587257
Assembly and characterization of the MHC class I region of the Yangtze finless porpoise (Neophocaena asiaeorientalis asiaeorientalis). PMID:26585324
Insectivorous bats carry host specific astroviruses and coronaviruses across different regions in Germany. PMID:26584511
Comparative Genomics of Field Isolates of Mycobacterium bovis and M. caprae Provides Evidence for Possible Correlates with Bacterial Viability and Virulence. PMID:26583774
Accurate Genetic Detection of Hepatitis C Virus Transmissions in Outbreak Settings. PMID:26582955
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences. PMID:26582926
Macroevolutionary assembly of ant/plant symbioses: Pseudomyrmex ants and their ant-housing plants in the Neotropics. PMID:26582029
Optimizing and benchmarking de novo transcriptome sequencing: from library preparation to assembly evaluation. PMID:26581708
Genomics and transcriptomics of Xanthomonas campestris species challenge the concept of core type III effectome. PMID:26581393
RNA sequencing uncovers antisense RNAs and novel small RNAs in Streptococcus pyogenes. PMID:26580233
DNA data bank of Japan (DDBJ) progress report. PMID:26578571
Granule Associated Serine Proteases of Hematopoietic Cells - An Analysis of Their Appearance and Diversification during Vertebrate Evolution. PMID:26569620
Using de novo protein structure predictions to measure the quality of very large multiple sequence alignments. PMID:26568625
Characterization of the Vibrio fischeri Fatty Acid Chemoreceptors, VfcB and VfcB2. PMID:26567312
A large scale prediction of bacteriocin gene blocks suggests a wide functional spectrum for bacteriocins. PMID:26558535
The GH5 1,4-β-mannanase from Bifidobacterium animalis subsp. lactis Bl-04 possesses a low-affinity mannan-binding module and highlights the diversity of mannanolytic enzymes. PMID:26558435
Prospective function of FtsZ proteins in the secondary plastid of chlorarachniophyte algae. PMID:26556725
Shotgun Mitogenomics Provides a Reference Phylogenetic Framework and Timescale for Living Xenarthrans. PMID:26556496
Ancient Origin of the U2 Small Nuclear RNA Gene-Targeting Non-LTR Retrotransposons Utopia. PMID:26556480
Some Like it High! Phylogenetic Diversity of High-Elevation Cyanobacterial Community from Biological Soil Crusts of Western Himalaya. PMID:26552394
Bats and Rodents Shape Mammalian Retroviral Phylogeny. PMID:26548564
The Transporter Classification Database (TCDB): recent advances. PMID:26546518
Cladosporium cladosporioides and C. tenuissimum Cause Blossom Blight in Strawberry in Korea. PMID:26539056
Taxonomic Study of the Genus Abundisporus in Korea. PMID:26539038
Inferring Indel Parameters using a Simulation-based Approach. PMID:26537226
The Distant Siblings-A Phylogenomic Roadmap Illuminates the Origins of Extant Diversity in Fungal Aromatic Polyketide Biosynthesis. PMID:26537223
Differential microRNA Expression in Fast- and Slow-Twitch Skeletal Muscle of Piaractus mesopotamicus during Growth. PMID:26529415
Multiple adaptations to polar and alpine environments within cyanobacteria: a phylogenomic and Bayesian approach. PMID:26528250
Divergent evolution of two corticotropin-releasing hormone (CRH) genes in teleost fishes. PMID:26528116
Determining the Position of Storks on the Phylogenetic Tree of Waterbirds by Retroposon Insertion Analysis. PMID:26527652
Ectomycorrhizal fungi decompose soil organic matter using oxidative mechanisms adapted from saprotrophic ancestors. PMID:26527297
Divergence between the Highly Virulent Zoonotic Pathogen Helicobacter heilmannii and Its Closest Relative, the Low-Virulence "Helicobacter ailurogastricus" sp. nov. PMID:26527212
Diversity of Pseudomonas Genomes, Including Populus-Associated Isolates, as Revealed by Comparative Genome Analysis. PMID:26519390
Analysis of the Complete Chloroplast Genome of a Medicinal Plant, Dianthus superbus var. longicalyncinus, from a Comparative Genomics Perspective. PMID:26513163
Characterizing selective pressures on the pathway for de novo biosynthesis of pyrimidines in yeast. PMID:26511837
Insights from the genome of Ophiocordyceps polyrhachis-furcata to pathogenicity and host specificity in insect fungi. PMID:26511477
Two contemporaneous mitogenomes from terminal Pleistocene burials in eastern Beringia. PMID:26504230
Family resemblances: A common fold for some dimeric ion-coupled secondary transporters. PMID:26503722
Foreign DNA capture during CRISPR-Cas adaptive immunity. PMID:26503043
Evolutionary and Phylogenetic Analysis of the Hepaciviruses and Pegiviruses. PMID:26494702
Divergent Viruses Discovered in Arthropods and Vertebrates Revise the Evolutionary History of the Flaviviridae and Related Viruses. PMID:26491167
A Unique Multibasic Proteolytic Cleavage Site and Three Mutations in the HA2 Domain Confer High Virulence of H7N1 Avian Influenza Virus in Chickens. PMID:26491158
The complete mitochondrial genome of Anoplocephala perfoliata, the first representative for the family Anoplocephalidae. PMID:26490141
Description of a New Galapagos Giant Tortoise Species (Chelonoidis; Testudines: Testudinidae) from Cerro Fatal on Santa Cruz Island. PMID:26488886
A mutation in the nucleoporin-107 gene causes XX gonadal dysgenesis. PMID:26485283
A distinct pathway for tetrahymanol synthesis in bacteria. PMID:26483502
Evolutionary history of phosphatidylinositol- 3-kinases: ancestral origin in eukaryotes and complex duplication patterns. PMID:26482564
Transmission of the PabI family of restriction DNA glycosylase genes: mobility and long-term inheritance. PMID:26481899
Early Evolution of Vertebrate Mybs: An Integrative Perspective Combining Synteny, Phylogenetic, and Gene Expression Analyses. PMID:26475318
The LysE Superfamily of Transport Proteins Involved in Cell Physiology and Pathogenesis. PMID:26474485
Middle East Respiratory Syndrome Coronavirus Outbreak in the Republic of Korea, 2015. PMID:26473095
Shared Escovopsis parasites between leaf-cutting and non-leaf-cutting ants in the higher attine fungus-growing ant symbiosis. PMID:26473050
Relationships within Cladobranchia (Gastropoda: Nudibranchia) based on RNA-Seq data: an initial investigation. PMID:26473045
Phylogenetic tests reject Emery's rule in the evolution of social parasitism in yellowjackets and hornets (Hymenoptera: Vespidae, Vespinae). PMID:26473041
The complete mitochondrial genome of rabbit pinworm Passalurus ambiguus: genome characterization and phylogenetic analysis. PMID:26472717
Complete mitochondrial genome of Bactrocera arecae (Insecta: Tephritidae) by next-generation sequencing and molecular phylogeny of Dacini tribe. PMID:26472633
Candidatus Neoehrlichia sp. in an Austrian fox is distinct from Candidatus Neoehrlichia mikurensis, but closer related to Candidatus Neoehrlichia lotoris. PMID:26471191
The utility of protein structure as a predictor of site-wise dN/dS varies widely among HIV-1 proteins. PMID:26468068
Complex transcriptional regulation and independent evolution of fungal-like traits in a relative of animals. PMID:26465111
2μ plasmid in Saccharomyces species and in Saccharomyces cerevisiae. PMID:26463005
Comparing species tree estimation with large anchored phylogenomic and small Sanger-sequenced molecular datasets: an empirical study on Malagasy pseudoxyrhophiine snakes. PMID:26459325
Viral variants that initiate and drive maturation of V1V2-directed HIV-1 broadly neutralizing antibodies. PMID:26457756
Peptidase specificity from the substrate cleavage collection in the MEROPS database and a tool to measure cleavage site conservation. PMID:26455268
Localization and Evolution of Putative Triose Phosphate Translocators in the Diatom Phaeodactylum tricornutum. PMID:26454011
Intrastrand triplex DNA repeats in bacteria: a source of genomic instability. PMID:26450966
Genome-Wide Architecture of Disease Resistance Genes in Lettuce. PMID:26449254
The Dedicated Chaperone Acl4 Escorts Ribosomal Protein Rpl4 to Its Nuclear Pre-60S Assembly Site. PMID:26447800
DECIPHER: harnessing local sequence context to improve protein multiple sequence alignment. PMID:26445311
Development of ListeriaBase and comparative analysis of Listeria monocytogenes. PMID:26444974
Manipulation of oil synthesis in Nannochloropsis strain NIES-2145 with a phosphorus starvation-inducible promoter from Chlamydomonas reinhardtii. PMID:26441858
Structural and Functional Evidence for Testosterone Activation of GPRC6A in Peripheral Tissues. PMID:26440882
Functional Advantages of Conserved Intrinsic Disorder in RNA-Binding Proteins. PMID:26439842
Genome analyses of the sunflower pathogen Plasmopara halstedii provide insights into effector evolution in downy mildews and Phytophthora. PMID:26438312
First genome analysis and molecular characterization of Chickpea chlorotic dwarf virus Egyptian isolate infecting squash. PMID:26436119
Following the Footsteps of Chlamydial Gene Regulation. PMID:26424812
Variation in the ribosome interacting loop of the Sec61α from Giardia lamblia. PMID:26424409
Genome expansion in bacteria: the curios case of Chlamydia trachomatis. PMID:26423146
The Prediction and Validation of Small CDSs Expand the Gene Repertoire of the Smallest Known Eukaryotic Genomes. PMID:26421846
Genetic diversity and evolutionary insights of respiratory syncytial virus A ON1 genotype: global and local transmission dynamics. PMID:26420660
Evolution and development of the adelphophagic, intracapsular Schmidt's larva of the nemertean Lineus ruber. PMID:26417429
Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis. PMID:26416663
Multilocus species trees and species delimitation in a temporal context: application to the water shrews of the genus Neomys. PMID:26416383
Different Ancestries of R Tailocins in Rhizospheric Pseudomonas Isolates. PMID:26412856
Characterisation of seven Inocybe ectomycorrhizal morphotypes from a semiarid woody steppe. PMID:26403243
Core Genome Multilocus Sequence Typing Scheme for High- Resolution Typing of Enterococcus faecium. PMID:26400782
Dormant phages of Helicobacter pylori reveal distinct populations in Europe. PMID:26387443
Evolution of Chemical Diversity in a Group of Non-Reduced Polyketide Gene Clusters: Using Phylogenetics to Inform the Search for Novel Fungal Natural Products. PMID:26378577
Genomic Analysis, Phenotype, and Virulence of the Historical Brazilian Smallpox Vaccine Strain IOC: Implications for the Origins and Evolutionary Relationships of Vaccinia Virus. PMID:26378174
Distribution and Abundance of Hopanoid Producers in Low-Oxygen Environments of the Eastern Pacific Ocean. PMID:26377203
HIV-1 group O infection in Cameroon from 2006 to 2013: Prevalence, genetic diversity, evolution and public health challenges. PMID:26371064
Complete mitochondrial genome of the medicinal fungus Ophiocordyceps sinensis. PMID:26370521
Comparative genomic analyses of freshly isolated Giardia intestinalis assemblage A isolates. PMID:26370391
Diversification of non-visual photopigment parapinopsin in spectral sensitivity for diverse pineal functions. PMID:26370232
Transcriptome Analysis of the Central and Peripheral Nervous Systems of the Spider Cupiennius salei Reveals Multiple Putative Cys-Loop Ligand Gated Ion Channel Subunits and an Acetylcholine Binding Protein. PMID:26368804
Accelerated rates of protein evolution in barley grain and pistil biased genes might be legacy of domestication. PMID:26362289
Cytokinin-induced promotion of root meristem size in the fern Azolla supports a shoot-like origin of euphyllophyte roots. PMID:26358624
Evolution of a Novel Antiviral Immune-Signaling Interaction by Partial-Gene Duplication. PMID:26356745
Parallel molecular routes to cold adaptation in eight genera of New Zealand stick insects. PMID:26355841
A Specialized Histone H1 Variant Is Required for Adaptive Responses to Complex Abiotic Stress and Related DNA Methylation in Arabidopsis. PMID:26351307
Computational approaches to study the effects of small genomic variations. PMID:26350246
Comparative genomics analysis of pKF3-94 in Klebsiella pneumoniae reveals plasmid compatibility and horizontal gene transfer. PMID:26347723
The isolation and characterization of actinobacteria from dominant benthic macroinvertebrates endemic to Lake Baikal. PMID:26347255
Whole transcriptomic analysis of the plant-beneficial rhizobacterium Bacillus amyloliquefaciens SQR9 during enhanced biofilm formation regulated by maize root exudates. PMID:26346121
ReproPhylo: An Environment for Reproducible Phylogenomics. PMID:26335558
Diagnostics for a troubled backbone: testing topological hypotheses of trapelioid lichenized fungi in a large-scale phylogeny of Ostropomycetidae (Lecanoromycetes). PMID:26321894
Comparative Genomics Including the Early-Diverging Smut Fungus Ceraceosorus bombacis Reveals Signatures of Parallel Evolution within Plant and Animal Pathogens of Fungi and Oomycetes. PMID:26314305
Rapid evolution of chemosensory receptor genes in a pair of sibling species of orchid bees (Apidae: Euglossini). PMID:26314297
Comparative Genomics and Characterization of Hybrid Shigatoxigenic and Enterotoxigenic Escherichia coli (STEC/ETEC) Strains. PMID:26313149
Skipper genome sheds light on unique phenotypic traits and phylogeny. PMID:26311350
Revisiting the taxonomical classification of Porcine Circovirus type 2 (PCV2): still a real challenge. PMID:26311322
The influence of ecological and geographical context in the radiation of Neotropical sigmodontine rodents. PMID:26307442
Abnormal Localization of STK17A in Bile Canaliculi in Liver Allografts: An Early Sign of Chronic Rejection. PMID:26305096
Refining the pH response in Aspergillus nidulans: a modulatory triad involving PacX, a novel zinc binuclear cluster protein. PMID:26303777
OD-seq: outlier detection in multiple sequence alignments. PMID:26303676
The Mitochondrial Genomes of Aquila fasciata and Buteo lagopus (Aves, Accipitriformes): Sequence, Structure and Phylogenetic Analyses. PMID:26295156
Evolution and Design Governing Signal Precision and Amplification in a Bacterial Chemosensory Pathway. PMID:26291327
A High Through-put Platform for Recombinant Antibodies to Folded Proteins. PMID:26290498
Origin and Diversification of Meprin Proteases. PMID:26288188
Endosymbiotic origin and differential loss of eukaryotic genes. PMID:26287458
Gene expression during zombie ant biting behavior reflects the complexity underlying fungal parasitic behavioral manipulation. PMID:26285697
Comparative genome analysis of Mycoplasma pneumoniae. PMID:26275904
Chemoreceptor Evolution in Hymenoptera and Its Implications for the Evolution of Eusociality. PMID:26272716
Identification, Phylogeny, and Function of fabp2 Paralogs in Two Non-Model Teleost Fish Species. PMID:26272429
Recent Invasion of the Symbiont-Bearing Foraminifera Pararotalia into the Eastern Mediterranean Facilitated by the Ongoing Warming Trend. PMID:26270964
Microbial eukaryotic diversity and distribution in a river plume and cyclonic eddy-influenced ecosystem in the South China Sea. PMID:26268071
Genetic and Physical Interaction Studies Reveal Functional Similarities between ALBINO3 and ALBINO4 in Arabidopsis. PMID:26265777
Conserved Gene Expression Programs in Developing Roots from Diverse Plants. PMID:26265761
Independent Co-Option of a Tailed Bacteriophage into a Killing Complex in Pseudomonas. PMID:26265717
A hairy case: The evolution of filtering carnivorous Drusinae (Limnephilidae, Trichoptera). PMID:26265260
Complete chloroplast genome sequence of MD-2 pineapple and its comparative analysis among nine other plants from the subclass Commelinidae. PMID:26264372
Early evolution of the angiosperm clade Asteraceae in the Cretaceous of Antarctica. PMID:26261324
The pre-vertebrate origins of neurogenic placodes. PMID:26258298
Transcriptome analysis and RNA interference of cockroach phototransduction indicate three opsins and suggest a major role for TRPL channels. PMID:26257659
Multiple conversion between the genes encoding bacterial class-I release factors. PMID:26257102
Widespread Recurrent Patterns of Rapid Repeat Evolution in the Kinetochore Scaffold KNL1. PMID:26254484
Phylogeny of Echinoderm Hemoglobins. PMID:26247465
Structural and functional influences of coagulation factor XIII subunit B heterozygous missense mutants. PMID:26247044
Anaerobic biosynthesis of the lower ligand of vitamin B12. PMID:26246619
Diversification of the Genus Anopheles and a Neotropical Clade from the Late Cretaceous. PMID:26244561
OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy. PMID:26243257
"PP2C7s", Genes Most Highly Elaborated in Photosynthetic Organisms, Reveal the Bacterial Origin and Stepwise Evolution of PPM/PP2C Protein Phosphatases. PMID:26241330
Analysis of phylogenomic datasets reveals conflict, concordance, and gene duplications with examples from animals and plants. PMID:26239519
Potential Role of Acetyl-CoA Synthetase (acs) and Malate Dehydrogenase (mae) in the Evolution of the Acetate Switch in Bacteria and Archaea. PMID:26235787
POTION: an end-to-end pipeline for positive Darwinian selection detection in genome-scale data through phylogenetic comparison of protein-coding genes. PMID:26231214
Phylogeny of the Vitamin K 2,3-Epoxide Reductase (VKOR) Family and Evolutionary Relationship to the Disulfide Bond Formation Protein B (DsbB) Family. PMID:26230708
Mitochondrial Genome Supports Sibling Species of Angiostrongylus costaricensis (Nematoda: Angiostrongylidae). PMID:26230642
Host Jumps and Radiation, Not Co-Divergence Drives Diversification of Obligate Pathogens. A Case Study in Downy Mildews and Asteraceae. PMID:26230508
Gnathostoma spinigerum Mitochondrial Genome Sequence: a Novel Gene Arrangement and its Phylogenetic Position within the Class Chromadorea. PMID:26228511
The Genome of Winter Moth (Operophtera brumata) Provides a Genomic Perspective on Sexual Dimorphism and Phenology. PMID:26227816
Draft Genome Sequences of Five Pseudomonas fluorescens Subclade I and II Strains, Isolated from Human Respiratory Samples. PMID:26227600
Morphologically Cryptic Amphipod Species Are "Ecological Clones" at Regional but Not at Local Scale: A Case Study of Four Niphargus Species. PMID:26226375
Comparative Genomics of a Bacterivorous Green Alga Reveals Evolutionary Causalities and Consequences of Phago-Mixotrophic Mode of Nutrition. PMID:26224703
Cyanate as an energy source for nitrifiers. PMID:26222031
Genome sequence of Clostridium sporogenes DSM 795(T), an amino acid-degrading, nontoxic surrogate of neurotoxin-producing Clostridium botulinum. PMID:26221421
Novel molecular markers for the detection of methanogens and phylogenetic analyses of methanogenic communities. PMID:26217325
Molecular phylogeny supports S-chaetae as a key character better than jumping organs and body scales in classification of Entomobryoidea (Collembola). PMID:26212216
Complete genome sequence of Ostreid herpesvirus-1 associated with mortalities of Scapharca broughtonii broodstocks. PMID:26209441
The Hidden Diversity of Zanclea Associated with Scleractinians Revealed by Molecular Data. PMID:26207903
Ganoderma species, including new taxa associated with root rot of the iconic Jacaranda mimosifolia in Pretoria, South Africa. PMID:26203427
Identification of a new order of root-colonising fungi in the Entorrhizomycota: Talbotiomycetales ord. nov. on eudicotyledons. PMID:26203418
Kiwi genome provides insights into evolution of a nocturnal lifestyle. PMID:26201466
Molecular Phylogenetic Analysis of Ballistoconidium-Forming Yeasts in Trichosporonales (Tremellomycetes): A Proposal for Takashimella gen. nov. and Cryptotrichosporon tibetense sp. nov. PMID:26200459
Entorrhizomycota: A New Fungal Phylum Reveals New Perspectives on the Evolution of Fungi. PMID:26200112
Impermanence of bacterial clones. PMID:26195749
Molecular investigation of a full-length genome of a Q1-like IBV strain isolated in Italy in 2013. PMID:26191621
Domain organization of DNase from Thioalkalivibrio sp. provides insights into retention of activity in high salt environments. PMID:26191053
Nuclease Tudor-SN Is Involved in Tick dsRNA-Mediated RNA Interference and Feeding but Not in Defense against Flaviviral or Anaplasma phagocytophilum Rickettsial Infection. PMID:26186700
A TRP conductance modulates repolarization after sensory-dependent depolarization in Chlamydomonas reinhardtii. PMID:26186626
The making of a branching annelid: an analysis of complete mitochondrial genome and ribosomal data of Ramisyllis multicaudata. PMID:26183383
Absence of catalytic domain in a putative protein kinase C (PkcA) suppresses tip dominance in Dictyostelium discoideum. PMID:26183108
Redescription of two subterranean amphipods Niphargusmolnari Méhely, 1927 and Niphargusgebhardti Schellenberg, 1934 (Amphipoda, Niphargidae) and their phylogenetic position. PMID:26175603
Systematics of the Madagascar Anelosimus spiders: remarkable local richness and endemism, and dual colonization from the Americas. PMID:26175602
Chromerid genomes reveal the evolutionary path from photosynthetic algae to obligate intracellular parasites. PMID:26175406
Ebolavirus comparative genomics. PMID:26175035
Tree diversity and species identity effects on soil fungi, protists and animals are context dependent. PMID:26172210
Identification of common horsetail (Equisetum arvense L.; Equisetaceae) using Thin Layer Chromatography versus DNA barcoding. PMID:26165523
Application of Subspace Clustering in DNA Sequence Analysis. PMID:26162018
The Origin and Evolution of Baeyer-Villiger Monooxygenases (BVMOs): An Ancestral Family of Flavin Monooxygenases. PMID:26161776
Predictive and comparative analysis of Ebolavirus proteins. PMID:26158395
SNP Analysis Infers that Recombination Is Involved in the Evolution of Amitraz Resistance in Rhipicephalus microplus. PMID:26158272
Comparative analysis of tissue-specific transcriptomes in the funnel-web spider Macrothele calpeiana (Araneae, Hexathelidae). PMID:26157629
Microplitis demolitor Bracovirus Proviral Loci and Clustered Replication Genes Exhibit Distinct DNA Amplification Patterns during Replication. PMID:26157119
Range-Wide Genetic Analysis of Little Brown Bat (Myotis lucifugus) Populations: Estimating the Risk of Spread of White-Nose Syndrome. PMID:26154307
Detection of an inversion in the Ty-2 region between S. lycopersicum and S. habrochaites by a combination of de novo genome assembly and BAC cloning. PMID:26152571
Conserved regulatory mechanism controls the development of cells with rooting functions in land plants. PMID:26150509
A Cyclic GMP-Dependent K+ Channel in the Blastocladiomycete Fungus Blastocladiella emersonii. PMID:26150416
Evidence of Statistical Inconsistency of Phylogenetic Methods in the Presence of Multiple Sequence Alignment Uncertainty. PMID:26139831
Guanchochroma wildpretii gen. et spec. nov. (Ochrophyta) Provides New Insights into the Diversification and Evolution of the Algal Class Synchromophyceae. PMID:26135124
GPCRtm: An amino acid substitution matrix for the transmembrane region of class A G Protein-Coupled Receptors. PMID:26134144
Investigation of Marine-Derived Fungal Diversity and Their Exploitable Biological Activities. PMID:26133554
Functional Constraint Profiling of a Viral Protein Reveals Discordance of Evolutionary Conservation and Functionality. PMID:26132554
Occurrence of Isopenicillin-N-Synthase Homologs in Bioluminescent Ctenophores and Implications for Coelenterazine Biosynthesis. PMID:26125183
The Taxonomic Status of Mazama bricenii and the Significance of the Táchira Depression for Mammalian Endemism in the Cordillera de Mérida, Venezuela. PMID:26121688
nextflu: real-time tracking of seasonal influenza virus evolution in humans. PMID:26115986
A Database of Plastid Protein Families from Red Algae and Apicomplexa and Expression Regulation of the moeB Gene. PMID:26114108
How Did Arthropod Sesquiterpenoids and Ecdysteroids Arise? Comparison of Hormonal Pathway Genes in Noninsect Arthropod Genomes. PMID:26112967
PlantOrDB: a genome-wide ortholog database for land plants and green algae. PMID:26112452
Avian influenza virus exhibits distinct evolutionary dynamics in wild birds and poultry. PMID:26111936
Comparative Evolution of Duplicated Ddx3 Genes in Teleosts: Insights from Japanese Flounder, Paralichthys olivaceus. PMID:26109358
The complete mitochondrial genome of Papilio glaucus and its phylogenetic implications. PMID:26106582
Integrative conjugative elements of the ICEPan family play a potential role in Pantoea ananatis ecological diversification and antibiosis. PMID:26106378
Biochemical characterization of allene oxide synthases from the liverwort Marchantia polymorpha and green microalgae Klebsormidium flaccidum provides insight into the evolutionary divergence of the plant CYP74 family. PMID:26105654
Identification of novel Xanthomonas euvesicatoria type III effector proteins by a machine-learning approach. PMID:26104875
Complete Chloroplast Genome of Tanaecium tetragonolobum: The First Bignoniaceae Plastome. PMID:26103589
Np9, a cellular protein of retroviral ancestry restricted to human, chimpanzee and gorilla, binds and regulates ubiquitin ligase MDM2. PMID:26103464
Miniaturized mitogenome of the parasitic plant Viscum scurruloideum is extremely divergent and dynamic and has lost all nad genes. PMID:26100885
Evidence for horizontal transfer of mitochondrial DNA to the plastid genome in a bamboo genus. PMID:26100509
Expression study of the hunchback ortholog in embryos of the onychophoran Euperipatoides rowelli. PMID:26093940
Insights into Penicillium roqueforti Morphological and Genetic Diversity. PMID:26091176
Analysis of the key enzymes of butyric and acetic acid fermentation in biogas reactors. PMID:26086956
The taxonomic status of Dugesiabiblica from Israel and Turkey (Platyhelminthes, Tricladida, Dugesiidae). PMID:26085791
Complete mitochondrial genomes and nuclear ribosomal RNA operons of two species of Diplostomum (Platyhelminthes: Trematoda): a molecular resource for taxonomy and molecular epidemiology of important fish pathogens. PMID:26084797
Toward accurate molecular identification of species in complex environmental samples: testing the performance of sequence filtering and clustering methods. PMID:26078860
Divergence thresholds and divergent biodiversity estimates: can metabarcoding reliably describe zooplankton communities? PMID:26078859
Comparative mitogenomic analysis of the superfamily Pentatomoidea (Insecta: Hemiptera: Heteroptera) and phylogenetic implications. PMID:26076960
Complete Genome Sequence of Sporisorium scitamineum and Biotrophic Interaction Transcriptome with Sugarcane. PMID:26065709
Back to Tanganyika: a case of recent trans-species-flock dispersal in East African haplochromine cichlid fishes. PMID:26064619
A spectacular new species of seadragon (Syngnathidae). PMID:26064603
Efficient Detection of Novel Nuclear Markers for Brassicaceae by Transcriptome Sequencing. PMID:26061739
Phylogenetic relationships of subfamilies in the family Hesperiidae (Lepidoptera: Hesperioidea) from China. PMID:26059470
Diversity and Evolutionary History of Iron Metabolism Genes in Diatoms. PMID:26052941
Adaptive Potential of Hybridization among Malaria Vectors: Introgression at the Immune Locus TEP1 between Anopheles coluzzii and A. gambiae in 'Far-West' Africa. PMID:26047479
The Complete Mitochondrial Genome of Corizus tetraspilus (Hemiptera: Rhopalidae) and Phylogenetic Analysis of Pentatomomorpha. PMID:26042898
When the lights go out: the evolutionary fate of free-living colorless green algae. PMID:26042246
Emerging sporotrichosis is driven by clonal and recombinant Sporothrix species. PMID:26038739
Similarity-based codes sequentially assigned to ebolavirus genomes are informative of species membership, associated outbreaks, and transmission chains. PMID:26034773
Origin and evolution of lysyl oxidases. PMID:26024311
Glycosyltransferase family 43 is also found in early eukaryotes and has three subfamilies in Charophycean green algae. PMID:26023931
Fossil and genetic evidence for the polyphyletic nature of the planktonic foraminifera "Globigerinoides", and description of the new genus Trilobatus. PMID:26020968
Geometric Constraints Dominate the Antigenic Evolution of Influenza H3N2 Hemagglutinin. PMID:26020774
Two independently folding units of Plasmodium profilin suggest evolution via gene fusion. PMID:26012696
Evolution and Functional Morphology of the Proboscis in Kalyptorhynchia (Platyhelminthes). PMID:26002347
Suillus indicus sp. nov. (Boletales, Basidiomycota), a new boletoid fungus from northwestern Himalayas, India. PMID:26000197
Evolution. Systematic humanization of yeast genes reveals conserved functions and genetic modularity. PMID:25999509
Turning Escherichia coli into a Frataxin-Dependent Organism. PMID:25996492
Conservation of G-Protein Epitopes in Respiratory Syncytial Virus (Group A) Despite Broad Genetic Diversity: Is Antibody Selection Involved in Virus Evolution? PMID:25995258
Bioinformatical analysis of the sequences, structures and functions of fungal polyketide synthase product template domains. PMID:25995122
Evolution of the Translocation and Assembly Module (TAM). PMID:25994932
Interactions between tick and transmitted pathogens evolved to minimise competition through nested and coherent networks. PMID:25993662
Widespread recombination, reassortment, and transmission of unbalanced compound viral genotypes in natural arenavirus infections. PMID:25993603
Haemagglutinin mutations and glycosylation changes shaped the 2012/13 influenza A(H3N2) epidemic, Houston, Texas. PMID:25990233
Fecal virome analysis of three carnivores reveals a novel nodavirus and multiple gemycircularviruses. PMID:25986582
Evolution of retinoic acid receptors in chordates: insights from three lamprey species, Lampetra fluviatilis, Petromyzon marinus, and Lethenteron japonicum. PMID:25984292
Promotion of bone morphogenetic protein signaling by tetraspanins and glycosphingolipids. PMID:25978409
Phylogenomic Analyses Indicate that Early Fungi Evolved Digesting Cell Walls of Algal Ancestors of Land Plants. PMID:25977457
Est10: A Novel Alkaline Esterase Isolated from Bovine Rumen Belonging to the New Family XV of Lipolytic Enzymes. PMID:25973851
High-throughput analysis of human cytomegalovirus genome diversity highlights the widespread occurrence of gene-disrupting mutations and pervasive recombination. PMID:25972543
Genetic diversity and evolutionary dynamics of Ebola virus in Sierra Leone. PMID:25970247
Origin, divergence, and phylogeny of asexual Epichloë endophyte in Elymus species from western China. PMID:25970178
Alcelaphine Herpesvirus-1 (Malignant Catarrhal Fever Virus) in Wildebeest Placenta: Genetic Variation of ORF50 and A9.5 Alleles. PMID:25969987
DisCons: a novel tool to quantify and classify evolutionary conservation of intrinsic protein disorder. PMID:25968230
Lineage-specific gene radiations underlie the evolution of novel betalain pigmentation in Caryophyllales. PMID:25966996
Soup to Tree: The Phylogeny of Beetles Inferred by Mitochondrial Metagenomics of a Bornean Rainforest Sample. PMID:25957318
Novel Detection of Insecticide Resistance Related P450 Genes and Transcriptome Analysis of the Hemimetabolous Pest Erthesina fullo (Thunberg) (Hemiptera: Heteroptera). PMID:25955554
Large-scale analysis of the evolutionary histories of phosphorylation motifs in the human genome. PMID:25949811
Glutathione S-Transferase (GST) Gene Diversity in the Crustacean Calanus finmarchicus--Contributors to Cellular Detoxification. PMID:25945801
Complex archaea that bridge the gap between prokaryotes and eukaryotes. PMID:25945739
The European and Japanese outbreaks of H5N8 derive from a single source population providing evidence for the dispersal along the long distance bird migratory flyways. PMID:25945320
The massive mitochondrial genome of the angiosperm Silene noctiflora is evolving by gain or loss of entire chromosomes. PMID:25944937
First record of Limnatispaluda (Hirudinida, Arhynchobdellida, Praobdellidae) from Kazakhstan, with comments on genetic diversity of Limnatis leeches. PMID:25941456
Tempo and mode of antibat ultrasound production and sonar jamming in the diverse hawkmoth radiation. PMID:25941377
Reevaluating Emx gene phylogeny: homopolymeric amino acid tracts as a potential factor obscuring orthology signals in cyclostome genes. PMID:25935411
Comparison of the Diversity of Basidiomycetes from Dead Wood of the Manchurian fir (Abies holophylla) as Evaluated by Fruiting Body Collection, Mycelial Isolation, and 454 Sequencing. PMID:25933635
Description of a new species of Wormaldia from Sardinia and a new Drusus species from the Western Balkans (Trichoptera, Philopotamidae, Limnephilidae). PMID:25931956
The evolutionary fate of alternatively spliced homologous exons after gene duplication. PMID:25931610
Evolution of the RAG1-RAG2 locus: both proteins came from the same transposon. PMID:25928409
A unique chromatin complex occupies young α-satellite arrays of human centromeres. PMID:25927077
The distal upstream promoter in Ly49 genes, Pro1, is active in mature NK cells and T cells, does not require TATA boxes, and displays enhancer activity. PMID:25926675
Naturally Occurring Resistance-Associated Variants of Hepatitis C Virus Protease Inhibitors in Poor Responders to Pegylated Interferon-Ribavirin. PMID:25926499
Domain atrophy creates rare cases of functional partial protein domains. PMID:25924720
Too packed to change: side-chain packing and site-specific substitution rates in protein evolution. PMID:25922797
TRIP13 is a protein-remodeling AAA+ ATPase that catalyzes MAD2 conformation switching. PMID:25918846
RNA-seq-Based Gene Annotation and Comparative Genomics of Four Fungal Grass Pathogens in the Genus Zymoseptoria Identify Novel Orphan Genes and Species-Specific Invasions of Transposable Elements. PMID:25917918
Endosymbiosis undone by stepwise elimination of the plastid in a parasitic dinoflagellate. PMID:25902514
Genome of the Rusty Millipede, Trigoniulus corallinus, Illuminates Diplopod, Myriapod, and Arthropod Evolution. PMID:25900922
Identification and characterization of cichlid TAAR genes and comparison with other teleost TAAR repertoires. PMID:25900688
The study of Priapulus caudatus reveals conserved molecular patterning underlying different gut morphogenesis in the Ecdysozoa. PMID:25895830
Genome-wide identification and evolution of HECT genes in soybean. PMID:25894222
Molecular epidemiological study of feline coronavirus strains in Japan using RT-PCR targeting nsp14 gene. PMID:25889235
HIV-1 diversity in an antiretroviral treatment naïve cohort from Bushbuckridge, Mpumalanga Province, South Africa. PMID:25889106
High pheromone diversity in the male cheek gland of the red-spotted newt Notophthalmus viridescens (Salamandridae). PMID:25888438
aTRAM - automated target restricted assembly method: a fast method for assembling loci across divergent taxa from next-generation sequencing data. PMID:25887972
The genome of the basal agaricomycete Xanthophyllomyces dendrorhous provides insights into the organization of its acetyl-CoA derived pathways and the evolution of Agaricomycotina. PMID:25887949
Implication of coronin 7 in body weight regulation in humans, mice and flies. PMID:25887538
Amino acid transporter expansions associated with the evolution of obligate endosymbiosis in sap-feeding insects (Hemiptera: sternorrhyncha). PMID:25887093
Characterization of the transcriptome of fast and slow muscle myotomal fibres in the pacu (Piaractus mesopotamicus). PMID:25886905
Streptophyte phytochromes exhibit an N-terminus of cyanobacterial origin and a C-terminus of proteobacterial origin. PMID:25886068
A RNA-seq approach to identify putative toxins from acrorhagi in aggressive and non-aggressive Anthopleura elegantissima polyps. PMID:25886045
The complete mitochondrial genome of the gullet worm Gongylonema pulchrum: gene content, arrangement, composition and phylogenetic implications. PMID:25884563
GUIDANCE2: accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parameters. PMID:25883146
The plant Polycomb repressive complex 1 (PRC1) existed in the ancestor of seed plants and has a complex duplication history. PMID:25881027
Mitochondrial DNA and the Y chromosome suggest the settlement of Madagascar by Indonesian sea nomad populations. PMID:25880430
Sequencing and phylogenetic analysis of the gp51 gene from Korean bovine leukemia virus isolates. PMID:25879943
Construction of a virtual Mycobacterium tuberculosis consensus genome and its application to data from a next generation sequencer. PMID:25879806
The evolutionary conservation of the A Disintegrin-like and Metalloproteinase domain with Thrombospondin-1 motif metzincins across vertebrate species and their expression in teleost zebrafish. PMID:25879701
Phylogenetic utility of ribosomal genes for reconstructing the phylogeny of five Chinese satyrine tribes (Lepidoptera, Nymphalidae). PMID:25878526
Metatranscriptomes reveal functional variation in diatom communities from the Antarctic Peninsula. PMID:25871931
An integrative taxonomic investigation of the diversity of digenean parasites infecting the intertidal snail Austrolittorina unifasciata Gray, 1826 (Gastropoda: Littorinidae) in Australia. PMID:25866083
Contemporary evolution of resistance at the major insecticide target site gene Ace-1 by mutation and copy number variation in the malaria mosquito Anopheles gambiae. PMID:25865270
Genetic diversity and host alternation of the egg parasitoid Ooencyrtus pityocampae between the pine processionary moth and the caper bug. PMID:25856082
Phylogenetic molecular species delimitations unravel potential new species in the pest genus Spodoptera Guenée, 1852 (Lepidoptera, Noctuidae). PMID:25853412
Isolation of cellulolytic bacteria from the intestine of Diatraea saccharalis larvae and evaluation of their capacity to degrade sugarcane biomass. PMID:25852992
The composition of the global and feature specific cyanobacterial core-genomes. PMID:25852675
RNA shotgun metagenomic sequencing of northern California (USA) mosquitoes uncovers viruses, bacteria, and fungi. PMID:25852655
Single-cell genomics of a rare environmental alphaproteobacterium provides unique insights into Rickettsiaceae evolution. PMID:25848874
A genome-wide analysis of MADS-box genes in peach [Prunus persica (L.) Batsch]. PMID:25848674
The EMBL-EBI bioinformatics web and programmatic tools framework. PMID:25845596
New record and enzyme activity of four species in Penicillium section Citrina from marine environments in Korea. PMID:25845537
Characterization and structure prediction of partial length protein sequences of pcoA, pcoR and chrB genes from heavy metal resistant bacteria from the Klip River, South Africa. PMID:25837632
Maximum-Likelihood Phylogenetic Inference with Selection on Protein Folding Stability. PMID:25837579
Dissecting Molecular Evolution in the Highly Diverse Plant Clade Caryophyllales Using Transcriptome Sequencing. PMID:25837578
CHOPIN: a web resource for the structural and functional proteome of Mycobacterium tuberculosis. PMID:25833954
An ancestral bacterial division system is widespread in eukaryotic mitochondria. PMID:25831547
A review of Theileria diagnostics and epidemiology. PMID:25830110
No need to replace an "anomalous" primate (Primates) with an "anomalous" bear (Carnivora, Ursidae). PMID:25829853
Lpg0393 of Legionella pneumophila is a guanine-nucleotide exchange factor for Rab5, Rab21 and Rab22. PMID:25821953
Phylogenomic and molecular demarcation of the core members of the polyphyletic pasteurellaceae genera actinobacillus, haemophilus, and pasteurella. PMID:25821780
Time-calibrated phylogenomics of the classical swine fever viruses: genome-wide bayesian coalescent approach. PMID:25815768
Genome-wide identification, evolutionary, and expression analyses of histone H3 variants in plants. PMID:25815311
Multigene assessment of the species boundaries and sexual status of the basidiomycetous yeasts Cryptococcus flavescens and C. terrestris (Tremellales). PMID:25811603
Genome-wide comparative analysis reveals similar types of NBS genes in hybrid Citrus sinensis genome and original Citrus clementine genome and provides new insights into non-TIR NBS genes. PMID:25811466
Cryptic diversity of caddisflies in the Balkans: the curious case of Ecclisopteryx species (Trichoptera: Limnephilidae). PMID:25810791
Identification and characterization of diverse groups of endogenous retroviruses in felids. PMID:25808580
Identification and characterization of a novel group of legume-specific, Golgi apparatus-localized WRKY and Exo70 proteins from soybean. PMID:25805717
Ancient proteins resolve the evolutionary history of Darwin's South American ungulates. PMID:25799987
Application of the phylogenetic species concept to Wallemia sebi from house dust and indoor air revealed by multi-locus genealogical concordance. PMID:25799362
Gene Loss and Lineage-Specific Restriction-Modification Systems Associated with Niche Differentiation in the Campylobacter jejuni Sequence Type 403 Clonal Complex. PMID:25795671
Sequencing and analysis of globally obtained human respiratory syncytial virus A and B genomes. PMID:25793751
Homozygous MED25 mutation implicated in eye-intellectual disability syndrome. PMID:25792360
Functional diversification and specialization of cytosolic 70-kDa heat shock proteins. PMID:25791537
Relationship between protein thermodynamic constraints and variation of evolutionary rates among sites. PMID:25787027
Fungal metabolic gene clusters-caravans traveling across genomes and environments. PMID:25784900
Oriented cell division shapes carnivorous pitcher leaves of Sarracenia purpurea. PMID:25774486
Multi-locus tree and species tree approaches toward resolving a complex clade of downy mildews (Straminipila, Oomycota), including pathogens of beet and spinach. PMID:25772799
Highly divergent 18S rRNA gene paralogs in a Cryptosporidium genotype from eastern chipmunks (Tamias striatus). PMID:25772204
Archaeal Clusters of Orthologous Genes (arCOGs): An Update and Application for Analysis of Shared Features between Thermococcales, Methanococcales, and Methanobacteriales. PMID:25764277
Genomic and phenotypic differentiation among Methanosarcina mazei populations from Columbia River sediment. PMID:25756680
An integrative study of Necremnus Thomson (Hymenoptera: Eulophidae) associated with invasive pests in Europe and North America: taxonomic and ecological implications. PMID:25745268
Population structure of Endomicrobia in single host cells of termite gut flagellates (Trichonympha spp.). PMID:25739443
Comprehensive, structurally-informed alignment and phylogeny of vertebrate biogenic amine receptors. PMID:25737813
Moniliellomycetes and Malasseziomycetes, two new classes in Ustilaginomycotina. PMID:25737592
Distribution and evolution of nitrogen fixation genes in the phylum Bacteroidetes. PMID:25736980
Alternative splicing and co-option of transposable elements: the case of TMPO/LAP2α and ZNF451 in mammals. PMID:25735770
Comparative analyses of lysophosphatidic acid receptor-mediated signaling. PMID:25732591
Metagenomic assessment of the potential microbial nitrogen pathways in the rhizosphere of a mediterranean forest after a wildfire. PMID:25732259
Moth tails divert bat attack: evolution of acoustic deflection. PMID:25730869
The genome and transcriptome of the zoonotic hookworm Ancylostoma ceylanicum identify infection-specific gene families. PMID:25730766
Towards a universal barcode of oomycetes--a comparison of the cox1 and cox2 loci. PMID:25728598
Coordinated rates of evolution between interacting plastid and nuclear genes in Geraniaceae. PMID:25724640
The importance of arbuscular mycorrhiza for Cyclamen purpurascens subsp. immaculatum endemic in Slovakia. PMID:25720737
PROTEIN TARGETING TO STARCH is required for localising GRANULE-BOUND STARCH SYNTHASE to starch granules and for normal amylose synthesis in Arabidopsis. PMID:25710501
Plasmodium falciparum XPD translocates in 5' to 3' direction, is expressed throughout the blood stages, and interacts with p44. PMID:25708921
NIK1-mediated translation suppression functions as a plant antiviral immunity mechanism. PMID:25707794
Biosynthetic products from a nearshore-derived gram-negative bacterium enable reassessment of the kailuin depsipeptides. PMID:25699470
The phylogenetic utility and functional constraint of microRNA flanking sequences. PMID:25694624
Side-by-side secretion of Late Palaeozoic diverged courtship pheromones in an aquatic salamander. PMID:25694622
Transfection of Sclerotinia sclerotiorum with in vitro transcripts of a naturally occurring interspecific recombinant of Sclerotinia sclerotiorum hypovirus 2 significantly reduces virulence of the fungus. PMID:25694604
One tree to link them all: a phylogenetic dataset for the European tetrapoda. PMID:25685620
Tiger Swallowtail Genome Reveals Mechanisms for Speciation and Caterpillar Chemical Defense. PMID:25683714
Characterization of a novel PQQ-dependent quinohemoprotein pyranose dehydrogenase from Coprinopsis cinerea classified into auxiliary activities family 12 in carbohydrate-active enzymes. PMID:25679509
A novel rhabdovirus isolated from the straw-colored fruit bat Eidolon helvum, with signs of antibodies in swine and humans. PMID:25673701
Phylogenomics of phrynosomatid lizards: conflicting signals from sequence capture versus restriction site associated DNA sequencing. PMID:25663487
The C. elegans Crumbs family contains a CRB3 homolog and is not essential for viability. PMID:25661870
New species of Limnephilidae (Insecta: Trichoptera) from Europe: Alps and Pyrenees as harbours of unknown biodiversity. PMID:25661619
Rapid diversification associated with a macroevolutionary pulse of developmental plasticity. PMID:25650739
PolyMarker: A fast polyploid primer design pipeline. PMID:25649618
Comparative analysis of the complete genome sequences of Kenyan African swine fever virus isolates within p72 genotypes IX and X. PMID:25645905
Multiple invasions of an infectious retrovirus in cat genomes. PMID:25641657
Nectar sugars and bird visitation define a floral niche for basidiomycetous yeast on the Canary Islands. PMID:25638173
Draft Genome Sequences of Seven Pseudomonas fluorescens Subclade III Strains Isolated from Cystic Fibrosis Patients. PMID:25635025
Unprecedented genomic diversity of RNA viruses in arthropods reveals the ancestry of negative-sense RNA viruses. PMID:25633976
Dynamics of the endosymbiont Rickettsia in an insect pest. PMID:25626393
Molecular evolution and diversification of the Argonaute family of proteins in plants. PMID:25626325
Does early learning drive ecological divergence during speciation processes in parasitoid wasps? PMID:25621331
Whole genome sequencing and analysis reveal insights into the genetic structure, diversity and evolutionary relatedness of luxI and luxR homologs in bacteria belonging to the Sphingomonadaceae family. PMID:25621282
New light on the systematics of fungi associated with attine ant gardens and the description of Escovopsis kreiselii sp. nov. PMID:25617836
Simian retrovirus 4 induces lethal acute thrombocytopenia in Japanese macaques. PMID:25609821
Streptococcus gallolyticus subsp. gallolyticus from human and animal origins: genetic diversity, antimicrobial susceptibility, and characterization of a vancomycin-resistant calf isolate carrying a vanA-Tn1546-like element. PMID:25605355
Molecular phylogeny and diagnosis of species of the family Protostrongylidae from caprine hosts in Uzbekistan. PMID:25595657
YersiniaBase: a genomic resource and analysis platform for comparative analysis of Yersinia. PMID:25591325
Conserved molecular signatures in gp120 are associated with the genetic bottleneck during simian immunodeficiency virus (SIV), SIV-human immunodeficiency virus (SHIV), and HIV type 1 (HIV-1) transmission. PMID:25589663
The Ordospora colligata genome: Evolution of extreme reduction in microsporidia and host-to-parasite horizontal gene transfer. PMID:25587016
Screening blood-fed mosquitoes for the diagnosis of filarioid helminths and avian malaria. PMID:25582219
Evolutionary patterns in coiled-coils. PMID:25577198
Evaluating the accuracy and efficiency of multiple sequence alignment methods. PMID:25574120
The complete mitochondrial genome of the yellow-browed bunting, Emberiza chrysophrys (Passeriformes: Emberizidae), and phylogenetic relationships within the genus Emberiza. PMID:25572228
Molecular signatures and phylogenomic analysis of the genus Burkholderia: proposal for division of this genus into the emended genus Burkholderia containing pathogenic organisms and a new genus Paraburkholderia gen. nov. harboring environmental species. PMID:25566316
Molecular and morphological differentiation between two Miocene-divergent lineages of Amazonian shrimps, with the description of a new species (Decapoda, Palaemonidae, Palaemon). PMID:25561832
A synthetic phylogeny of freshwater crayfish: insights for conservation. PMID:25561670
Relatedness is a poor predictor of negative plant-soil feedbacks. PMID:25557183
Intraspecific polymorphism, interspecific divergence, and the origins of function-altering mutations in deer mouse hemoglobin. PMID:25556236
Molecular variation and horizontal gene transfer of the homocysteine methyltransferase gene mmuM and its distribution in clinical pathogens. PMID:25552925
Genome-wide comparisons of phylogenetic similarities between partial genomic regions and the full-length genome in Hepatitis E virus genotyping. PMID:25542033
Genome-wide identification of hsp40 genes in channel catfish and their regulated expression after bacterial infection. PMID:25542027
European sea bass genome and its variation provide insights into adaptation to euryhalinity and speciation. PMID:25534655
Antibody-specific model of amino acid substitution for immunological inferences from alignments of antibody sequences. PMID:25534034
Comparative transcriptome analyses reveal core parasitism genes and suggest gene duplication and repurposing as sources of structural novelty. PMID:25534030
Rooting the domain archaea by phylogenomic analysis supports the foundation of the new kingdom Proteoarchaeota. PMID:25527841
The eukaryotic ancestor had a complex ubiquitin signaling system of archaeal origin. PMID:25525215
Taxonomic study of a new eustigmatophycean alga, Vacuoliviride crystalliferum gen. et sp. nov. PMID:25516501
Plasmodium falciparum field isolates from areas of repeated emergence of drug resistant malaria show no evidence of hypermutator phenotype. PMID:25514047
To move or to evolve: contrasting patterns of intercontinental connectivity and climatic niche evolution in "Terebinthaceae" (Anacardiaceae and Burseraceae). PMID:25506354
Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs. PMID:25504731
Deciphering the genome repertoire of Pseudomonas sp. M1 toward β-myrcene biotransformation. PMID:25503374
Emergence shapes the structure of the seed microbiota. PMID:25501471
Evolutionary link between metazoan RHIM motif and prion-forming domain of fungal heterokaryon incompatibility factor HET-s/HET-s. PMID:25500536
Chaperone-usher fimbriae in a diverse selection of Gallibacterium genomes. PMID:25495603
The incidence and pattern of copollinator diversification in dioecious and monoecious figs. PMID:25495152
The genus Bipolaris. PMID:25492990
Redefining Ceratocystis and allied genera. PMID:25492989
Aspergillus, Penicillium and Talaromyces isolated from house dust samples collected around the world. PMID:25492981
Ochratoxin production and taxonomy of the yellow aspergilli (Aspergillus section Circumdati). PMID:25492980
Genomic sequences of six botulinum neurotoxin-producing strains representing three clostridial species illustrate the mobility and diversity of botulinum neurotoxin genes. PMID:25489752
A variant of Rubus yellow net virus with altered genomic organization. PMID:25480633
Exploring features and function of Ss-riok-3, an enigmatic kinase gene from Strongyloides stercoralis. PMID:25477034
The HIV mutation browser: a resource for human immunodeficiency virus mutagenesis and polymorphism data. PMID:25474213
An infection of Gyrodactylus kobayashii Hukuda, 1940 (Monogenea) associated with the mortality of goldfish (Carassius auratus) from central China. PMID:25471903
AromaDeg, a novel database for phylogenomics of aerobic bacterial degradation of aromatics. PMID:25468931
A novel bioinformatics pipeline to discover genes related to arbuscular mycorrhizal symbiosis based on their evolutionary conservation pattern among higher plants. PMID:25465219
Discovery, diversity and evolution of novel coronaviruses sampled from rodents in China. PMID:25463600
A C. elegans homolog of the Cockayne syndrome complementation group A gene. PMID:25453470
Network of long-range concerted chemical shift displacements upon ligand binding to human angiogenin. PMID:25450558
Characterization of Antimicrobial Resistance Dissemination across Plasmid Communities Classified by Network Analysis. PMID:25437804
How and why overcome the impediments to resolution: lessons from rhinolophid and hipposiderid bats. PMID:25433366
A tribal level phylogeny of Lake Tanganyika cichlid fishes based on a genomic multi-marker approach. PMID:25433288
Nemertean toxin genes revealed through transcriptome sequencing. PMID:25432940
Bayesian phylogeny of sucrose transporters: ancient origins, differential expansion and convergent evolution in monocots and dicots. PMID:25429293
Echinochloa chloroplast genomes: insights into the evolution and taxonomic identification of two weedy species. PMID:25427255
Phylogenetic analysis reveals dynamic evolution of the poly(A)-binding protein gene family in plants. PMID:25421536
Calcareous sponge genomes reveal complex evolution of α-carbonic anhydrases and two key biomineralization enzymes. PMID:25421146
Comparative genomic analysis of Mycobacterium iranicum UM_TJL against representative mycobacterial species suggests its environmental origin. PMID:25417557
Epistasis constrains mutational pathways of hemoglobin adaptation in high-altitude pikas. PMID:25415962
Analysis of adaptive evolution in Lyssavirus genomes reveals pervasive diversifying selection during species diversification. PMID:25415197
Comparative evolutionary diversity and phylogenetic structure across multiple forest dynamics plots: a mega-phylogeny approach. PMID:25414723
Comparative genomics of closely related Salmonella enterica serovar Typhi strains reveals genome dynamics and the acquisition of novel pathogenic elements. PMID:25412680
SAS-1 is a C2 domain protein critical for centriole integrity in C. elegans. PMID:25412110
Ultradeep pyrosequencing of NS3 to predict response to triple therapy with protease inhibitors in previously treated chronic hepatitis C patients. PMID:25411182
Construction and evaluation of novel rhesus monkey adenovirus vaccine vectors. PMID:25410856
Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms. PMID:25407802
Mutational bias is the driving force for shaping the synonymous codon usage pattern of alternatively spliced genes in rice (Oryza sativa L.). PMID:25407289
Feline sporotrichosis due to Sporothrix brasiliensis: an emerging animal infection in São Paulo, Brazil. PMID:25407096
Variability among the most rapidly evolving plastid genomic regions is lineage-specific: implications of pairwise genome comparisons in Pyrus (Rosaceae) and other angiosperms for marker choice. PMID:25405773
Evolutionary origin of highly repetitive plastid genomes within the clover genus (Trifolium). PMID:25403617
Diversity and variability of NOD-like receptors in fungi. PMID:25398782
How evolution of genomes is reflected in exact DNA sequence match statistics. PMID:25398628
Three novel virophage genomes discovered from Yellowstone Lake metagenomes. PMID:25392206
A mitochondrial intron in a verongid sponge. PMID:25391846
Molecular epidemiology of seal parvovirus, 1988-2014. PMID:25390639
Whole-genome enrichment and sequencing of Chlamydia trachomatis directly from clinical samples. PMID:25388670
Toward more accurate ancestral protein genotype-phenotype reconstructions with the use of species tree-aware gene trees. PMID:25371435
The resistome of Pseudomonas aeruginosa in relationship to phenotypic susceptibility. PMID:25367914
Genome-wide identification and evolutionary analysis of positively selected miRNA genes in domesticated rice. PMID:25362560
Evolution and targeting of Omp85 homologs in the chloroplast outer envelope membrane. PMID:25352854
Analysis of gelsolin expression pattern in developing chicken embryo reveals high GSN expression level in tissues of neural crest origin. PMID:25352156
Taxonomic revision of Aegistasubchinensis (Möllendorff, 1884) (Stylommatophora, Bradybaenidae) and a description of a new species of Aegista from eastern Taiwan based on multilocus phylogeny and comparative morphology. PMID:25349506
HAMAP in 2015: updates to the protein family classification and annotation system. PMID:25348399
Molecular Taxonomical Re-classification of the Genus Suillus Micheli ex S. F. Gray in South Korea. PMID:25346598
Ecophysiology of Thioploca ingrica as revealed by the complete genome sequence supplemented with proteomic evidence. PMID:25343513
The extracellular heme-binding protein HbpS from the soil bacterium Streptomyces reticuli is an aquo-cobalamin binder. PMID:25342754
Understanding the functional difference between growth arrest-specific protein 6 and protein S: an evolutionary approach. PMID:25339693
Genomes and gene expression across light and productivity gradients in eastern subtropical Pacific microbial communities. PMID:25333462
Clathrin heavy chain is important for viability, oviposition, embryogenesis and, possibly, systemic RNAi response in the predatory mite Metaseiulus occidentalis. PMID:25329675
Phylogenetic properties of 50 nuclear loci in Medicago (Leguminosae) generated using multiplexed sequence capture and next-generation sequencing. PMID:25329401
Divergent and conserved elements comprise the chemoreceptive repertoire of the nonblood-feeding mosquito Toxorhynchites amboinensis. PMID:25326137
Oceanographic structure drives the assembly processes of microbial eukaryotic communities. PMID:25325383
Faster-X effects in two Drosophila lineages. PMID:25323954
Genome of the house fly, Musca domestica L., a global vector of diseases with adaptations to a septic environment. PMID:25315136
Functional phylogenomics analysis of bacteria and archaea using consistent genome annotation with UniFam. PMID:25293379
The complete mitochondrial genome of Scutopus ventrolineatus (Mollusca: Chaetodermomorpha) supports the Aculifera hypothesis. PMID:25288450
Transcriptomic analysis of a psammophyte food crop, sand rice (Agriophyllum squarrosum) and identification of candidate genes essential for sand dune adaptation. PMID:25287394
Diversification of the C-TERMINALLY ENCODED PEPTIDE (CEP) gene family in angiosperms, and evolution of plant-family specific CEP genes. PMID:25287121
Sequence differences in the internal transcribed spacer 1 and 5.8S ribosomal RNA among three Moniezia species isolated from ruminants in Japan. PMID:25283945
Discovery of bacterial polyhydroxyalkanoate synthase (PhaC)-encoding genes from seasonal Baltic Sea ice and cold estuarine waters. PMID:25280551
Microbiology, genomics, and clinical significance of the Pseudomonas fluorescens species complex, an unappreciated colonizer of humans. PMID:25278578
An evolutionary arms race between KRAB zinc-finger genes ZNF91/93 and SVA/L1 retrotransposons. PMID:25274305
A Ras-like domain in the light intermediate chain bridges the dynein motor to a cargo-binding region. PMID:25272277
Differential genome evolution between companion symbionts in an insect-bacterial symbiosis. PMID:25271287
Inferring phylogenies of evolving sequences without multiple sequence alignment. PMID:25266120
Phylogeny and taxonomy of the genus Gliocephalotrichum. PMID:25264387
Species limits in Diaporthe: molecular re-assessment of D. citri, D. cytosporella, D. foeniculina and D. rudis. PMID:25264384
SDT: a virus classification tool based on pairwise sequence alignment and identity calculation. PMID:25259891
U1 snDNA clusters in grasshoppers: chromosomal dynamics and genomic organization. PMID:25248465
Expanding the Halohydrin Dehalogenase Enzyme Family: Identification of Novel Enzymes by Database Mining. PMID:25239895
Use of whole genome sequences to develop a molecular phylogenetic framework for Rhodococcus fascians and the Rhodococcus genus. PMID:25237311
TBC1D9B functions as a GTPase-activating protein for Rab11a in polarized MDCK cells. PMID:25232007
Overlapping binding sites of the frataxin homologue assembly factor and the heat shock protein 70 transfer factor on the Isu iron-sulfur cluster scaffold protein. PMID:25228696
In silico prediction of Gallibacterium anatis pan-immunogens. PMID:25223320
Comparative genome sequencing reveals genomic signature of extreme desiccation tolerance in the anhydrobiotic midge. PMID:25216354
A unique nodavirus with novel features: mosinovirus expresses two subgenomic RNAs, a capsid gene of unknown origin, and a suppressor of the antiviral RNA interference pathway. PMID:25210176
Four marine digenean parasites of Austrolittorina spp. (Gastropoda: Littorinidae) in New Zealand: morphological and molecular data. PMID:25204600
The evolution of tyrosine-recombinase elements in Nematoda. PMID:25197791
Analysis of the opsin repertoire in the tardigrade Hypsibius dujardini provides insights into the evolution of opsin genes in panarthropoda. PMID:25193307
Evolution and comparative genomics of Campylobacter jejuni ST-677 clonal complex. PMID:25193305
A Polychaete's powerful punch: venom gland transcriptomics of Glycera reveals a complex cocktail of toxin homologs. PMID:25193302
A new Microviridae phage isolated from a failed biotechnological process driven by Escherichia coli. PMID:25192988
Transient hypermutagenesis accelerates the evolution of legume endosymbionts following horizontal gene transfer. PMID:25181317
Evidence for the retention of two evolutionary distinct plastids in dinoflagellates with diatom endosymbionts. PMID:25172904
Alternatives to vitamin B1 uptake revealed with discovery of riboswitches in multiple marine eukaryotic lineages. PMID:25171333
At least 23 genera instead of one: the case of Iris L. s.l. (Iridaceae). PMID:25170935
Gastrointestinal parasite fauna of Emperor Penguins (Aptenodytes forsteri) at the Atka Bay, Antarctica. PMID:25164274
Genomic landscape and evolutionary dynamics of mariner transposable elements within the Drosophila genus. PMID:25163909
Ubiquity and diversity of human-associated Demodex mites. PMID:25162399
Orthology inference in nonmodel organisms using transcriptomes and low-coverage genomes: improving accuracy and matrix occupancy for phylogenomics. PMID:25158799
Pachyseris inattesa sp. n. (Cnidaria, Anthozoa, Scleractinia): a new reef coral species from the Red Sea and its phylogenetic relationships. PMID:25152672
Phylogenomic analysis of glycogen branching and debranching enzymatic duo. PMID:25148856
Missing genes, multiple ORFs, and C-to-U type RNA editing in Acrasis kona (Heterolobosea, Excavata) mitochondrial DNA. PMID:25146648
Large-scale genomic analysis of codon usage in dengue virus and evaluation of its phylogenetic dependence. PMID:25136631
Discovery of a eukaryotic pyrroloquinoline quinone-dependent oxidoreductase belonging to a new auxiliary activity family in the database of carbohydrate-active enzymes. PMID:25121592
The interplay of restriction-modification systems with mobile genetic elements and their prokaryotic hosts. PMID:25120263
Generation of catalytic human Ago4 identifies structural elements important for RNA cleavage. PMID:25114291
Involvement of potato (Solanum tuberosum L.) MKK6 in response to potato virus Y. PMID:25111695
Metagenomic shotgun sequencing of a Bunyavirus in wild-caught Aedes aegypti from Thailand informs the evolutionary and genomic history of the Phleboviruses. PMID:25108381
Structure of Nipah virus unassembled nucleoprotein in complex with its viral chaperone. PMID:25108352
Horizontal transfers and gene losses in the phospholipid pathway of bartonella reveal clues about early ecological niches. PMID:25106622
Motif depletion in bacteriophages infecting hosts with CRISPR systems. PMID:25103210
Toward understanding the functional role of Ss-RIOK-1, a RIO protein kinase-encoding gene of Strongyloides stercoralis. PMID:25101874
ReformAlign: improved multiple sequence alignments using a profile-based meta-alignment approach. PMID:25099134
A tethered delivery mechanism explains the catalytic action of a microtubule polymerase. PMID:25097237
Characterization of actinobacteria associated with three ant-plant mutualisms. PMID:25096989
Positive Darwinian selection in the singularly large taste receptor gene family of an 'ancient' fish, Latimeria chalumnae. PMID:25091523
Soil moisture--a regulator of arbuscular mycorrhizal fungal community assembly and symbiotic phosphorus uptake. PMID:25085217
Sequence divergence and diversity suggests ongoing functional diversification of vertebrate NAD metabolism. PMID:25084685
New Phaeoacremonium species isolated from sandalwood trees in Western Australia. PMID:25083408
De novo characterisation of the greenlip abalone transcriptome (Haliotis laevigata) with a focus on the heat shock protein 70 (HSP70) family. PMID:25079910
Phytophthora ×stagnum nothosp. nov., a new hybrid from irrigation reservoirs at ornamental plant nurseries in Virginia. PMID:25072374
Re-evaluation of the Genus Antrodia (Polyporales, Basidiomycota) in Korea. PMID:25071379
A New Record of Penicillium antarcticum from Marine Environments in Korea. PMID:25071378
Massive expansion of Ubiquitination-related gene families within the Chlamydiae. PMID:25069652
Toward a method for tracking virus evolutionary trajectory applied to the pandemic H1N1 2009 influenza virus. PMID:25064525
Comparative genomics suggests that the human pathogenic fungus Pneumocystis jirovecii acquired obligate biotrophy through gene loss. PMID:25062922
Pogo-like transposases have been repeatedly domesticated into CENP-B-related proteins. PMID:25062917
An unexpected clade of South American ground beetles (Coleoptera, Carabidae, Bembidion). PMID:25061349
A novel fibroblast growth factor receptor family member promotes neuronal outgrowth and synaptic plasticity in aplysia. PMID:25059541
SnipViz: a compact and lightweight web site widget for display and dissemination of multiple versions of gene and protein sequences. PMID:25056180
LTR retroelements are intrinsic components of transcriptional networks in frogs. PMID:25056159
Not assessing the efficiency of multiple sequence alignment programs. PMID:25053971
Geranyllinalool synthases in solanaceae and other angiosperms constitute an ancient branch of diterpene synthases involved in the synthesis of defensive compounds. PMID:25052853
The complete mitochondrial genome of the scab mite Psoroptes cuniculi (Arthropoda: Arachnida) provides insights into Acari phylogeny. PMID:25052180
Short communication: Molecular epidemiology, phylogeny, and phylodynamics of CRF63_02A1, a recently originated HIV-1 circulating recombinant form spreading in Siberia. PMID:25050828
Negative purifying selection drives prion and doppel protein evolution. PMID:25038839
Phylogeny and evolution of pharmacophagy in tiger moths (Lepidoptera: Erebidae: Arctiinae). PMID:25036028

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function analysis
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multiple sequence alignment
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function analysis multiple sequence alignment

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Multiple Alignment using Fast Fourier Transform

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Multiple Alignment using Fast Fourier Transform
metasource: Fairsharing.org
version: None

MAFFT
metasource: Fairsharing.org
version: None

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Publications:

Publications
More detailed information about this field from each metasource.

MAFFT multiple sequence alignment software version 7: improvements in performance and usability
PMID: 23329690
metasource: Fairsharing.org
version: None

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function analysis
metasource: Fairsharing.org
version: None

multiple sequence alignment
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version: None

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Multiple Alignment Format

BAliBASE

Stockholm Multiple Alignment Format

Big Multiple Alignment Format

Sequence Alignment Map

CLUSTAL-W Alignment Format

Axt Alignment Format

NCBI Trace Archives

Chain Format for pairwise alignment

net alignment annotation Format

BLAST-like Alignment Tool Format

HMMER Profile File Format

MulPSSM

PANDIT

SYSTERS

Binary Alignment Map Format

Greengenes

FAST (Faceted Application of Subject Terminology) Event

FAST (Faceted Access of Subject Terminology) GenreForm

Atmospheric Chemistry Experiment

Multiple Alignment using Fast Fourier Transform Names More detailed information about this field from each metasource. × Multiple Alignment using Fast Fourier Transform metasource: Fairsharing.org version: None MAFFT metasource: Fairsharing.org version: None Close

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Publications: Publications More detailed information about this field from each metasource. × MAFFT multiple sequence alignment software version 7: improvements in performance and usability PMID: 23329690 metasource: Fairsharing.org version: None Close

Tags: Tags More detailed information about this field from each metasource. × function analysis metasource: Fairsharing.org version: None multiple sequence alignment metasource: Fairsharing.org version: None Close

More to explore:

1/20

Multiple Alignment Format

BAliBASE

Stockholm Multiple Alignment Format

Big Multiple Alignment Format

Sequence Alignment Map

CLUSTAL-W Alignment Format

Axt Alignment Format

NCBI Trace Archives

Chain Format for pairwise alignment

net alignment annotation Format

BLAST-like Alignment Tool Format

HMMER Profile File Format

MulPSSM

PANDIT

SYSTERS

Binary Alignment Map Format

Greengenes

FAST (Faceted Application of Subject Terminology) Event

FAST (Faceted Access of Subject Terminology) GenreForm

Atmospheric Chemistry Experiment

Multiple Alignment using Fast Fourier Transform

Names
More detailed information about this field from each metasource.

Multiple Alignment using Fast Fourier Transform
metasource: Fairsharing.org
version: None

MAFFT
metasource: Fairsharing.org
version: None

Publications:

Publications
More detailed information about this field from each metasource.

MAFFT multiple sequence alignment software version 7: improvements in performance and usability
PMID: 23329690
metasource: Fairsharing.org
version: None

Tags:

Tags
More detailed information about this field from each metasource.

function analysis
metasource: Fairsharing.org
version: None

multiple sequence alignment
metasource: Fairsharing.org
version: None