ProPortal
Names
More detailed information about this field from each metasource.
ProPortal
metasource: Fairsharing.org
version: FAIRsharing.org: ProPortal; ProPortal; DOI: https://doi.org/10.25504/FAIRsharing.spxmc4; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:33.692352
proportal
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:33.692352
Names
More detailed information about this field from each metasource.
ProPortal
metasource: Fairsharing.orgversion: FAIRsharing.org: ProPortal; ProPortal; DOI: https://doi.org/10.25504/FAIRsharing.spxmc4; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:33.692352
proportal
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:33.692352
Names
More detailed information about this field from each metasource.
ProPortal
metasource: Fairsharing.orgversion: FAIRsharing.org: ProPortal; ProPortal; DOI: https://doi.org/10.25504/FAIRsharing.spxmc4; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:33.692352
proportal
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:33.692352
ProPortal is a database containing genomic, metagenomic, transcriptomic and field data for the marine cyanobacterium Prochlorococcus. They provide a source of cross-referenced data across multiple scales of biological organization—from the genome to the ecosystem—embracing the full diversity of ecotypic variation within this microbial taxon, its sister group, Synechococcus and phages that infect them.
Description
More detailed information about this field from each metasource.
ProPortal is a database containing genomic, metagenomic, transcriptomic and field data for the marine cyanobacterium Prochlorococcus. They provide a source of cross-referenced data across multiple scales of biological organization—from the genome to the ecosystem—embracing the full diversity of ecotypic variation within this microbial taxon, its sister group, Synechococcus and phages that infect them.
metasource: Fairsharing.orgversion: FAIRsharing.org: ProPortal; ProPortal; DOI: https://doi.org/10.25504/FAIRsharing.spxmc4; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Prochlorococcus marinus and its phages
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
A database containing genomic, metagenomic, transcriptomic and field data for the marine cyanobacterium Prochlorococcus.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:33.692352
Webpage:
http://proportal.mit.edu/Webpage
More detailed information about this field from each metasource.
http://proportal.mit.edu/
metasource: Fairsharing.orgversion: FAIRsharing.org: ProPortal; ProPortal; DOI: https://doi.org/10.25504/FAIRsharing.spxmc4; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:33.692352
Publications:
Publications
More detailed information about this field from each metasource.
ProPortal: a resource for integrated systems biology of Prochlorococcus and its phage
PMID: 22102570
metasource: Fairsharing.org
version: FAIRsharing.org: ProPortal; ProPortal; DOI: https://doi.org/10.25504/FAIRsharing.spxmc4; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:33.692352
http://dx.doi.org/10.1093/nar/GKR1022
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
ProPortal: a resource for integrated systems biology of Prochlorococcus and its phage
PMID: 22102570
metasource: Fairsharing.org
version: FAIRsharing.org: ProPortal; ProPortal; DOI: https://doi.org/10.25504/FAIRsharing.spxmc4; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:33.692352
http://dx.doi.org/10.1093/nar/GKR1022
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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ProPortal: a resource for integrated systems biology of Prochlorococcus and its phage
PubMed citations: 17.
17 articles citing: ProPortal: a resource for integrated systems biology of Prochlorococcus and its phage
Cyanorak v2.1: a scalable information system dedicated to the visualization and expert curation of marine and brackish picocyanobacteria genomes. PMID:33125079
Genome Rearrangement Shapes Prochlorococcus Ecological Adaptation. PMID:29915114
Fundamental differences in diversity and genomic population structure between Atlantic and Pacific Prochlorococcus. PMID:28524867
Global genetic capacity for mixotrophy in marine picocyanobacteria. PMID:27137127
Global biogeography of Prochlorococcus genome diversity in the surface ocean. PMID:26836261
Cyanobacterial KnowledgeBase (CKB), a Compendium of Cyanobacterial Genomes and Proteomes. PMID:26305368
Clade-Specific Quantitative Analysis of Photosynthetic Gene Expression in Prochlorococcus. PMID:26244890
Databases for Microbiologists. PMID:26013493
Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus. PMID:25977791
Convergent evolution toward an improved growth rate and a reduced resistance range in Prochlorococcus strains resistant to phage. PMID:25922520
Physiology and evolution of nitrate acquisition in Prochlorococcus. PMID:25350156
Toward a systems-level understanding of gene regulatory, protein interaction, and metabolic networks in cyanobacteria. PMID:25071821
Secondary metabolite gene expression and interplay of bacterial functions in a tropical freshwater cyanobacterial bloom. PMID:24646695
More mixotrophy in the marine microbial mix. PMID:23667152
Genetic diversity in cultured and wild marine cyanomyoviruses reveals phosphorus stress as a strong selective agent. PMID:23657361
Transcriptome and proteome dynamics of a light-dark synchronized bacterial cell cycle. PMID:22952681
Ecology of uncultured Prochlorococcus clades revealed through single-cell genomics and biogeographic analysis. PMID:22895163 - http://dx.doi.org/10.1093/nar/GKR1022
Tags:
Tags
More detailed information about this field from each metasource.
annotation
metasource: Fairsharing.org
version: FAIRsharing.org: ProPortal; ProPortal; DOI: https://doi.org/10.25504/FAIRsharing.spxmc4; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
citation
metasource: Fairsharing.org
version: FAIRsharing.org: ProPortal; ProPortal; DOI: https://doi.org/10.25504/FAIRsharing.spxmc4; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
dna sequence data
metasource: Fairsharing.org
version: FAIRsharing.org: ProPortal; ProPortal; DOI: https://doi.org/10.25504/FAIRsharing.spxmc4; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
gene expression data
metasource: Fairsharing.org
version: FAIRsharing.org: ProPortal; ProPortal; DOI: https://doi.org/10.25504/FAIRsharing.spxmc4; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
gene model annotation
metasource: Fairsharing.org
version: FAIRsharing.org: ProPortal; ProPortal; DOI: https://doi.org/10.25504/FAIRsharing.spxmc4; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
genome map
metasource: Fairsharing.org
version: FAIRsharing.org: ProPortal; ProPortal; DOI: https://doi.org/10.25504/FAIRsharing.spxmc4; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
marine metagenome
metasource: Fairsharing.org
version: FAIRsharing.org: ProPortal; ProPortal; DOI: https://doi.org/10.25504/FAIRsharing.spxmc4; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metagenome
metasource: Fairsharing.org
version: FAIRsharing.org: ProPortal; ProPortal; DOI: https://doi.org/10.25504/FAIRsharing.spxmc4; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
orthologous
metasource: Fairsharing.org
version: FAIRsharing.org: ProPortal; ProPortal; DOI: https://doi.org/10.25504/FAIRsharing.spxmc4; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
sequence cluster
metasource: Fairsharing.org
version: FAIRsharing.org: ProPortal; ProPortal; DOI: https://doi.org/10.25504/FAIRsharing.spxmc4; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
genomics databases (non-vertebrate)
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
prokaryotic genome databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metagenomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:33.692352
transcriptomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:33.692352
gene expression
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:33.692352
genomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:33.692352
Tags
More detailed information about this field from each metasource.
annotation
metasource: Fairsharing.orgversion: FAIRsharing.org: ProPortal; ProPortal; DOI: https://doi.org/10.25504/FAIRsharing.spxmc4; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
citation
metasource: Fairsharing.orgversion: FAIRsharing.org: ProPortal; ProPortal; DOI: https://doi.org/10.25504/FAIRsharing.spxmc4; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
dna sequence data
metasource: Fairsharing.orgversion: FAIRsharing.org: ProPortal; ProPortal; DOI: https://doi.org/10.25504/FAIRsharing.spxmc4; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
gene expression data
metasource: Fairsharing.orgversion: FAIRsharing.org: ProPortal; ProPortal; DOI: https://doi.org/10.25504/FAIRsharing.spxmc4; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
gene model annotation
metasource: Fairsharing.orgversion: FAIRsharing.org: ProPortal; ProPortal; DOI: https://doi.org/10.25504/FAIRsharing.spxmc4; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
genome map
metasource: Fairsharing.orgversion: FAIRsharing.org: ProPortal; ProPortal; DOI: https://doi.org/10.25504/FAIRsharing.spxmc4; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
marine metagenome
metasource: Fairsharing.orgversion: FAIRsharing.org: ProPortal; ProPortal; DOI: https://doi.org/10.25504/FAIRsharing.spxmc4; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metagenome
metasource: Fairsharing.orgversion: FAIRsharing.org: ProPortal; ProPortal; DOI: https://doi.org/10.25504/FAIRsharing.spxmc4; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
orthologous
metasource: Fairsharing.orgversion: FAIRsharing.org: ProPortal; ProPortal; DOI: https://doi.org/10.25504/FAIRsharing.spxmc4; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
sequence cluster
metasource: Fairsharing.orgversion: FAIRsharing.org: ProPortal; ProPortal; DOI: https://doi.org/10.25504/FAIRsharing.spxmc4; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
genomics databases (non-vertebrate)
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
prokaryotic genome databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
metagenomics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:33.692352
transcriptomics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:33.692352
gene expression
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:33.692352
genomics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:33.692352
citation dna sequences gene expression gene model annotation genome map marine metagenome metagenome orthology sequence cluster genomics prokaryotic genome metagenomics transcriptomics gene expression genomics
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