LegumeIP
Names
More detailed information about this field from each metasource.
LegumeIP
metasource: Fairsharing.org
version: FAIRsharing.org: LegumeIP; LegumeIP; DOI: https://doi.org/10.25504/FAIRsharing.44yp73; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:16.140314
LegumelIP
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
legumeip
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:16.140314
Names
More detailed information about this field from each metasource.
LegumeIP
metasource: Fairsharing.orgversion: FAIRsharing.org: LegumeIP; LegumeIP; DOI: https://doi.org/10.25504/FAIRsharing.44yp73; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:16.140314
LegumelIP
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
legumeip
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:16.140314
Other names: LegumelIP, legumeip
Names
More detailed information about this field from each metasource.
LegumeIP
metasource: Fairsharing.orgversion: FAIRsharing.org: LegumeIP; LegumeIP; DOI: https://doi.org/10.25504/FAIRsharing.44yp73; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:16.140314
LegumelIP
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
legumeip
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:16.140314
The LegumeIP 2.0 database hosts large-scale genomics and transcriptomics data and provides integrative bioinformatics tools for the study of gene function and evolution in legumes.
Description
More detailed information about this field from each metasource.
The LegumeIP 2.0 database hosts large-scale genomics and transcriptomics data and provides integrative bioinformatics tools for the study of gene function and evolution in legumes.
metasource: Fairsharing.orgversion: FAIRsharing.org: LegumeIP; LegumeIP; DOI: https://doi.org/10.25504/FAIRsharing.44yp73; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
Model Legumes Integrative database Platform
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
LegumeIP is an integrative database and bioinformatics platform for comparative genomics and transcriptomics to facilitate the study of gene function and genome evolution in legumes, and ultimately to generate molecular based breeding tools to improve quality of crop legumes.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:16.140314
Webpage:
http://plantgrn.noble.org/LegumeIP/Webpage
More detailed information about this field from each metasource.
http://plantgrn.noble.org/LegumeIP/
metasource: Fairsharing.orgversion: FAIRsharing.org: LegumeIP; LegumeIP; DOI: https://doi.org/10.25504/FAIRsharing.44yp73; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:16.140314
Publications:
Publications
More detailed information about this field from each metasource.
LegumeIP: an integrative database for comparative genomics and transcriptomics of model legumes
PMID: 22110036
metasource: Fairsharing.org
version: FAIRsharing.org: LegumeIP; LegumeIP; DOI: https://doi.org/10.25504/FAIRsharing.44yp73; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:16.140314
LegumeIP 2.0--a platform for the study of gene function and genome evolution in legumes
PMID: 26578557
metasource: Fairsharing.org
version: FAIRsharing.org: LegumeIP; LegumeIP; DOI: https://doi.org/10.25504/FAIRsharing.44yp73; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
https://doi.org/10.1093/nar/gkaa976
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
LegumeIP: an integrative database for comparative genomics and transcriptomics of model legumes
PMID: 22110036
metasource: Fairsharing.org
version: FAIRsharing.org: LegumeIP; LegumeIP; DOI: https://doi.org/10.25504/FAIRsharing.44yp73; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:16.140314
LegumeIP 2.0--a platform for the study of gene function and genome evolution in legumes
PMID: 26578557
metasource: Fairsharing.org
version: FAIRsharing.org: LegumeIP; LegumeIP; DOI: https://doi.org/10.25504/FAIRsharing.44yp73; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
https://doi.org/10.1093/nar/gkaa976
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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LegumeIP: an integrative database for comparative genomics and transcriptomics of model legumes
PubMed citations: 43.
43 articles citing: LegumeIP: an integrative database for comparative genomics and transcriptomics of model legumes
Genome-wide identification and expression analysis of sucrose nonfermenting-1-related protein kinase (SnRK) genes in Triticum aestivum in response to abiotic stress. PMID:34795369
alfaNET: A Database of Alfalfa-Bacterial Stem Blight Protein-Protein Interactions Revealing the Molecular Features of the Disease-causing Bacteria. PMID:34361108
Cleaning the Medicago Microarray Database to Improve Gene Function Analysis. PMID:34207216
Evolutionary and functional analysis of two-component system in chickpea reveals CaRR13, a TypeB RR, as positive regulator of symbiosis. PMID:34146435
Genome-wide comparative transcriptome analysis of the A4-CMS line ICPA 2043 and its maintainer ICPB 2043 during the floral bud development of pigeonpea. PMID:33635500
Plant miR171 modulates mTOR pathway in HEK293 cells by targeting GNA12. PMID:33386590
Genome-wide transcriptional changes triggered by water deficit on a drought-tolerant common bean cultivar. PMID:33203368
LegumeIP V3: from models to crops-an integrative gene discovery platform for translational genomics in legumes. PMID:33166388
Identification of quantitative trait nucleotides and candidate genes for soybean seed weight by multiple models of genome-wide association study. PMID:32873245
Genomic Analysis of Vavilov's Historic Chickpea Landraces Reveals Footprints of Environmental and Human Selection. PMID:32486400
Identification of Alternative Mitochondrial Electron Transport Pathway Components in Chickpea Indicates a Differential Response to Salinity Stress between Cultivars. PMID:32481694
PRPs localized to the middle lamellae are required for cortical tissue integrity in Medicago truncatula roots. PMID:31927659
Heat Stress in Legume Seed Setting: Effects, Causes, and Future Prospects. PMID:31417579
Development of gene-based molecular markers tagging low alkaloid pauper locus in white lupin (Lupinus albus L.). PMID:31410824
Somatic Embryogenesis in the Medicago truncatula Model: Cellular and Molecular Mechanisms. PMID:30984208
Transcriptomic Changes in Medicago truncatula and Lotus japonicus Root Nodules during Drought Stress. PMID:30857310
The increase of photosynthetic carbon assimilation as a mechanism of adaptation to low temperature in Lotus japonicus. PMID:30696867
Genome-wide association and genomic prediction identifies soybean cyst nematode resistance in common bean including a syntenic region to soybean Rhg1 locus. PMID:30622722
Mapping resistance to Phytophthora root rot identifies independent loci from cultivated (Cicer arietinum L.) and wild (Cicer echinospermum P.H. Davis) chickpea. PMID:30535647
Legume Cytosolic and Plastid Acetyl-Coenzyme-A Carboxylase Genes Differ by Evolutionary Patterns and Selection Pressure Schemes Acting before and after Whole-Genome Duplications. PMID:30469317
Development of sequence-based markers for seed protein content in pigeonpea. PMID:30173295
A comprehensive review of web-based resources of non-coding RNAs for plant science research. PMID:29989090
Regulation of Carbon Partitioning in the Seed of the Model Legume Medicago truncatula and Medicago orbicularis: A Comparative Approach. PMID:29312368
Nodule-Enriched GRETCHEN HAGEN 3 Enzymes Have Distinct Substrate Specificities and Are Important for Proper Soybean Nodule Development. PMID:29182530
Dissecting the 'bacon and eggs' phenotype: transcriptomics of post-anthesis colour change in Lotus. PMID:28981620
Enhanced Secondary- and Hormone Metabolism in Leaves of Arbuscular Mycorrhizal Medicago truncatula. PMID:28698354
Genomic and phenotypic analysis of Vavilov's historic landraces reveals the impact of environment and genomic islands of agronomic traits. PMID:28684880
Networks Underpinning Symbiosis Revealed Through Cross-Species eQTL Mapping. PMID:28642272
Plant Actin-Depolymerizing Factors Possess Opposing Biochemical Properties Arising from Key Amino Acid Changes throughout Evolution. PMID:28123105
Expansion of the phosphatidylethanolamine binding protein family in legumes: a case study of Lupinus angustifolius L. FLOWERING LOCUS T homologs, LanFTc1 and LanFTc2. PMID:27769166
A Snapshot of Functional Genetic Studies in Medicago truncatula. PMID:27555857
Transcriptome Response Mediated by Cold Stress in Lotus japonicus. PMID:27066029
Transcriptome Profiling of Wild Arachis from Water-Limited Environments Uncovers Drought Tolerance Candidate Genes. PMID:26752807
LegumeIP 2.0--a platform for the study of gene function and genome evolution in legumes. PMID:26578557
CTDB: An Integrated Chickpea Transcriptome Database for Functional and Applied Genomics. PMID:26322998
Transcriptome Sequencing of Lima Bean (Phaseolus lunatus) to Identify Putative Positive Selection in Phaseolus and Legumes. PMID:26151849
The Medicago sativa gene index 1.2: a web-accessible gene expression atlas for investigating expression differences between Medicago sativa subspecies. PMID:26149169
Naturally occurring diversity helps to reveal genes of adaptive importance in legumes. PMID:25954294
Scanning the effects of ethyl methanesulfonate on the whole genome of Lotus japonicus using second-generation sequencing analysis. PMID:25660167
The root hair "infectome" of Medicago truncatula uncovers changes in cell cycle genes and reveals a requirement for Auxin signaling in rhizobial infection. PMID:25527707
An RNA-Seq based gene expression atlas of the common bean. PMID:25283805
SFGD: a comprehensive platform for mining functional information from soybean transcriptome data and its use in identifying acyl-lipid metabolism pathways. PMID:24712981
In silico identification of transcription factors in Medicago sativa using available transcriptomic resources. PMID:24556904 -
LegumeIP 2.0--a platform for the study of gene function and genome evolution in legumes
PubMed citations: 5.
5 articles citing: LegumeIP 2.0--a platform for the study of gene function and genome evolution in legumes
Orthology and synteny analysis of receptor-like kinases "RLK" and receptor-like proteins "RLP" in legumes. PMID:33568053
LegumeIP V3: from models to crops-an integrative gene discovery platform for translational genomics in legumes. PMID:33166388
LuluDB-The Database Created Based on Small RNA, Transcriptome, and Degradome Sequencing Shows the Wide Landscape of Non-coding and Coding RNA in Yellow Lupine (Lupinus luteus L.) Flowers and Pods. PMID:32499815
Development of gene-based molecular markers tagging low alkaloid pauper locus in white lupin (Lupinus albus L.). PMID:31410824
QTLomics in Soybean: A Way Forward for Translational Genomics and Breeding. PMID:28066449 - https://doi.org/10.1093/nar/gkaa976
Tags:
Tags
More detailed information about this field from each metasource.
dna sequence data
metasource: Fairsharing.org
version: FAIRsharing.org: LegumeIP; LegumeIP; DOI: https://doi.org/10.25504/FAIRsharing.44yp73; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
function analysis
metasource: Fairsharing.org
version: FAIRsharing.org: LegumeIP; LegumeIP; DOI: https://doi.org/10.25504/FAIRsharing.44yp73; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
gene ontology enrichment
metasource: Fairsharing.org
version: FAIRsharing.org: LegumeIP; LegumeIP; DOI: https://doi.org/10.25504/FAIRsharing.44yp73; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
gene expression data
metasource: Fairsharing.org
version: FAIRsharing.org: LegumeIP; LegumeIP; DOI: https://doi.org/10.25504/FAIRsharing.44yp73; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
gene model annotation
metasource: Fairsharing.org
version: FAIRsharing.org: LegumeIP; LegumeIP; DOI: https://doi.org/10.25504/FAIRsharing.44yp73; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
plant databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
other plants
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
mapping
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:16.140314
transcriptomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:16.140314
gene expression
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:16.140314
plant biology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:16.140314
gene and protein families
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:16.140314
Tags
More detailed information about this field from each metasource.
dna sequence data
metasource: Fairsharing.orgversion: FAIRsharing.org: LegumeIP; LegumeIP; DOI: https://doi.org/10.25504/FAIRsharing.44yp73; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
function analysis
metasource: Fairsharing.orgversion: FAIRsharing.org: LegumeIP; LegumeIP; DOI: https://doi.org/10.25504/FAIRsharing.44yp73; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
gene ontology enrichment
metasource: Fairsharing.orgversion: FAIRsharing.org: LegumeIP; LegumeIP; DOI: https://doi.org/10.25504/FAIRsharing.44yp73; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
gene expression data
metasource: Fairsharing.orgversion: FAIRsharing.org: LegumeIP; LegumeIP; DOI: https://doi.org/10.25504/FAIRsharing.44yp73; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
gene model annotation
metasource: Fairsharing.orgversion: FAIRsharing.org: LegumeIP; LegumeIP; DOI: https://doi.org/10.25504/FAIRsharing.44yp73; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
plant databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
other plants
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
mapping
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:16.140314
transcriptomics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:16.140314
gene expression
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:16.140314
plant biology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:16.140314
gene and protein families
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:16.140314
dna sequences function analysis gene ontology enrichment gene expression gene model annotation plant other plants mapping transcriptomics gene expression plant biology gene and protein families
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