Regulator of Actin-Based Motility (RoaM) Downregulates Actin Tail Formation by Rickettsia rickettsii and Is Negatively Selected in Mammalian Cell Culture.
PMID:35285700
Expression of the AHPND Toxins PirAvp and PirBvp Is Regulated by Components of the Vibrio parahaemolyticus Quorum Sensing (QS) System.
PMID:35270031
OperonSEQer: A set of machine-learning algorithms with threshold voting for detection of operon pairs using short-read RNA-sequencing data.
PMID:34986143
Predicting Selective RNA Processing and Stabilization Operons in Clostridium spp.
PMID:34177856
Identification of a Novel Class of Photolyases as Possible Ancestors of Their Family.
PMID:34175934
Carbohydrate-controlled serine protease inhibitor (serpin) production in Bifidobacterium longum subsp. longum.
PMID:33790385
A Burkholderia thailandensis DedA Family Membrane Protein Is Required for Proton Motive Force Dependent Lipid A Modification.
PMID:33510730
Detecting operons in bacterial genomes via visual representation learning.
PMID:33483546
Protein dosage of the lldPRD operon is correlated with RNase E-dependent mRNA processing.
PMID:33361194
Splicing Endonuclease Is an Important Player in rRNA and tRNA Maturation in Archaea.
PMID:33329479
Integrated Co-functional Network Analysis on the Resistance and Virulence Features in Acinetobacter baumannii.
PMID:33224132
Cyanorak v2.1: a scalable information system dedicated to the visualization and expert curation of marine and brackish picocyanobacteria genomes.
PMID:33125079
Expression of an Extracellular Protein (SMU.63) Is Regulated by SprV in Streptococcus mutans.
PMID:32978138
Synergic Effects of Temperature and Irradiance on the Physiology of the Marine Synechococcus Strain WH7803.
PMID:32793165
Prokaryotic single-cell RNA sequencing by in situ combinatorial indexing.
PMID:32451472
Agricultural intensification and the evolution of host specialism in the enteric pathogen Campylobacter jejuni.
PMID:32366649
Proteomic Changes of Klebsiella pneumoniae in Response to Colistin Treatment and crrB Mutation-Mediated Colistin Resistance.
PMID:32229491
Basal-Level Effects of (p)ppGpp in the Absence of Branched-Chain Amino Acids in Actinobacillus pleuropneumoniae.
PMID:32015147
General and Genomic DNA-Binding Specificity for the Thermus thermophilus HB8 Transcription Factor TTHB023.
PMID:31935968
Towards Exploring Toxin-Antitoxin Systems in Geobacillus: A Screen for Type II Toxin-Antitoxin System Families in a Thermophilic Genus.
PMID:31771094
Bioinformatic Analysis of the Type VI Secretion System and Its Potential Toxins in the Acinetobacter Genus.
PMID:31736933
A multi-scale coevolutionary approach to predict interactions between protein domains.
PMID:31634362
Multilayered horizontal operon transfers from bacteria reconstruct a thiamine salvage pathway in yeasts.
PMID:31611373
Identification and Characterization of Preferred DNA-Binding Sites for the Thermus thermophilus HB8 Transcriptional Regulator TTHA0973.
PMID:31284644
rSeqTU-A Machine-Learning Based R Package for Prediction of Bacterial Transcription Units.
PMID:31156694
A computational system for identifying operons based on RNA-seq data.
PMID:30953757
Prediction and large-scale analysis of primary operons in plastids reveals unique genetic features in the evolution of chloroplasts.
PMID:30828719
Identification, Functional Characterization, and Regulon Prediction of the Zinc Uptake Regulator (zur) of Bacillus anthracis - An Insight Into the Zinc Homeostasis of the Pathogen.
PMID:30687290
Relation of the pdxB-usg-truA-dedA Operon and the truA Gene to the Intracellular Survival of Salmonella enterica Serovar Typhimurium.
PMID:30658401
Changes in Transcriptome of Yersinia pseudotuberculosis IP32953 Grown at 3 and 28°C Detected by RNA Sequencing Shed Light on Cold Adaptation.
PMID:30538955
In vivo 3'-to-5' exoribonuclease targetomes of Streptococcus pyogenes.
PMID:30381461
Metabolic adaptations underlying genome flexibility in prokaryotes.
PMID:30372443
Dissecting the Repertoire of DNA-Binding Transcription Factors of the Archaeon Pyrococcus furiosus DSM 3638.
PMID:30248960
Functional Characterization of c-di-GMP Signaling-Related Genes in the Probiotic Lactobacillus acidophilus.
PMID:30210464
SLING: a tool to search for linked genes in bacterial datasets.
PMID:30124998
Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
PMID:29931111
Genome-wide screening of potential RNase Y-processed mRNAs in the M49 serotype Streptococcus pyogenes NZ131.
PMID:29900693
Parallels between experimental and natural evolution of legume symbionts.
PMID:29891837
Genes Activated by Vibrio cholerae upon Exposure to Caenorhabditis elegans Reveal the Mannose-Sensitive Hemagglutinin To Be Essential for Colonization.
PMID:29794057
Comparison of Alicyclobacillus acidocaldarius o-Succinylbenzoate Synthase to Its Promiscuous N-Succinylamino Acid Racemase/ o-Succinylbenzoate Synthase Relatives.
PMID:29767960
Design Strategy of Multi-electron Transfer Catalysts Based on a Bioinformatic Analysis of Oxygen Evolution and Reduction Enzymes.
PMID:29756682
Two dd-Carboxypeptidases from Mycobacterium smegmatis Affect Cell Surface Properties through Regulation of Peptidoglycan Cross-Linking and Glycopeptidolipids.
PMID:29735762
Formation of chimeric genes with essential functions at the origin of eukaryotes.
PMID:29534719
Identification and characterization of preferred DNA-binding sites for the Thermus thermophilus transcriptional regulator FadR.
PMID:28902898
Comparative genomics and phylogenomic analyses of lysine riboswitch distributions in bacteria.
PMID:28873470
MCE domain proteins: conserved inner membrane lipid-binding proteins required for outer membrane homeostasis.
PMID:28819315
Outer membrane phospholipase A's roles in Helicobacter pylori acid adaptation.
PMID:28616083
The Type IX Secretion System (T9SS): Highlights and Recent Insights into Its Structure and Function.
PMID:28603700
[Expression, purification and activity analysis of GGDEF and EAL domain-containing proteins from Lactobacillus acidophilus].
PMID:28539286
Transcriptional Control of the Lateral-Flagellar Genes of Bradyrhizobium diazoefficiens.
PMID:28533217
Effect of genomic distance on coexpression of coregulated genes in E. coli.
PMID:28419102
Differential regulation of riboflavin supply genes in Vibrio cholerae.
PMID:28239422
Analysis of Spo0M function in Bacillus subtilis.
PMID:28234965
Non-ribosomal peptide synthetases: Identifying the cryptic gene clusters and decoding the natural product.
PMID:28229977
Pleiotropic Regulation of Virulence Genes in Streptococcus mutans by the Conserved Small Protein SprV.
PMID:28167518
Genome-wide gene expression and RNA half-life measurements allow predictions of regulation and metabolic behavior in Methanosarcina acetivorans.
PMID:27852217
Xenobiotic-metabolizing enzymes in Bacillus anthracis: molecular and functional analysis of a truncated arylamine N-acetyltransferase isozyme.
PMID:27846346
Widespread formation of alternative 3' UTR isoforms via transcription termination in archaea.
PMID:27670118
The Secreted Protease PrtA Controls Cell Growth, Biofilm Formation and Pathogenicity in Xylella fastidiosa.
PMID:27492542
A novel intrinsically disordered outer membrane lipoprotein of Aggregatibacter actinomycetemcomitans binds various cytokines and plays a role in biofilm response to interleukin-1β and interleukin-8.
PMID:27459270
Identification of Preferred DNA-Binding Sites for the Thermus thermophilus Transcriptional Regulator SbtR by the Combinatorial Approach REPSA.
PMID:27428627
Investigating Evolutionary Dynamics of RHA1 Operons.
PMID:27398020
Tolerance to oxidative stress is required for maximal xylem colonization by the xylem-limited bacterial phytopathogen, Xylella fastidiosa.
PMID:27377476
Conserved Units of Co-Expression in Bacterial Genomes: An Evolutionary Insight into Transcriptional Regulation.
PMID:27195891
Genome-wide transcription start site mapping of Bradyrhizobium japonicum grown free-living or in symbiosis - a rich resource to identify new transcripts, proteins and to study gene regulation.
PMID:27107716
Different Transcriptional Responses from Slow and Fast Growth Rate Strains of Listeria monocytogenes Adapted to Low Temperature.
PMID:26973610
Systematic Mutational Analysis of Histidine Kinase Genes in the Nosocomial Pathogen Stenotrophomonas maltophilia Identifies BfmAK System Control of Biofilm Development.
PMID:26873318
Using host-pathogen protein interactions to identify and characterize Francisella tularensis virulence factors.
PMID:26714771
Characterization of New Virulence Factors Involved in the Intracellular Growth and Survival of Burkholderia pseudomallei.
PMID:26712202
Putative bacterial interactions from metagenomic knowledge with an integrative systems ecology approach.
PMID:26677108
OperomeDB: A Database of Condition-Specific Transcription Units in Prokaryotic Genomes.
PMID:26543854
Carboxydotrophic growth of Geobacter sulfurreducens.
PMID:26481622
Enhanced biofilm formation and multi-host transmission evolve from divergent genetic backgrounds in Campylobacter jejuni.
PMID:26373338
The conserved carboxyl domain of MorC, an inner membrane protein of Aggregatibacter actinomycetemcomitans, is essential for membrane function.
PMID:26205976
The diversity of membrane transporters encoded in bacterial arsenic-resistance operons.
PMID:26020003
Databases for Microbiologists.
PMID:26013493
Secondary structural entropy in RNA switch (Riboswitch) identification.
PMID:25928324
Proteomic Investigation of the Response of Enterococcus faecalis V583 when Cultivated in Urine.
PMID:25915650
Co-regulation of translation in protein complexes.
PMID:25909184
σ54-Dependent Response to Nitrogen Limitation and Virulence in Burkholderia cenocepacia Strain H111.
PMID:25841012
A cluster of four homologous small RNAs modulates C1 metabolism and the pyruvate dehydrogenase complex in Rhodobacter sphaeroides under various stress conditions.
PMID:25777678
Plasmids are vectors for redundant chromosomal genes in the Bacillus cereus group.
PMID:25608745
Pyrococcus furiosus flagella: biochemical and transcriptional analyses identify the newly detected flaB0 gene to encode the major flagellin.
PMID:25566211
The Vibrio cholerae VprA-VprB two-component system controls virulence through endotoxin modification.
PMID:25538196
Computational and experimental analysis of the secretome of Methylococcus capsulatus (Bath).
PMID:25479164
Transcriptome analysis reveals novel regulatory mechanisms in a genome-reduced bacterium.
PMID:25361977
MetaProx: the database of metagenomic proximons.
PMID:25288655
Genome-scale metabolic network validation of Shewanella oneidensis using transposon insertion frequency analysis.
PMID:25233219
The coding and noncoding architecture of the Caulobacter crescentus genome.
PMID:25078267
Elucidation of operon structures across closely related bacterial genomes.
PMID:24959722
The transcriptome landscape of Prochlorococcus MED4 and the factors for stabilizing the core genome.
PMID:24438106
The multifunctional role of the pallilysin-associated Treponema pallidum protein, Tp0750, in promoting fibrinolysis and extracellular matrix component degradation.
PMID:24303899
Linkage, mobility, and selfishness in the MazF family of bacterial toxins: a snapshot of bacterial evolution.
PMID:24265503
DOOR 2.0: presenting operons and their functions through dynamic and integrated views.
PMID:24214966
Natural selection for operons depends on genome size.
PMID:24201372
Measurements of mRNA degradation in Borrelia burgdorferi.
PMID:23974029
Evidence classification of high-throughput protocols and confidence integration in RegulonDB.
PMID:23327937