MAR databases
Names
More detailed information about this field from each metasource.
MAR databases
metasource: Fairsharing.org
version: FAIRsharing.org: MAR; MAR databases; DOI: https://doi.org/10.25504/FAIRsharing.SnTbUa; Last edited: Dec. 19, 2019, 11:06 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
MAR
metasource: Fairsharing.org
version: FAIRsharing.org: MAR; MAR databases; DOI: https://doi.org/10.25504/FAIRsharing.SnTbUa; Last edited: Dec. 19, 2019, 11:06 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
MMP
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Marine Metagenomics Portal
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:00.047861
mmp
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:00.047861
Names
More detailed information about this field from each metasource.
MAR databases
metasource: Fairsharing.orgversion: FAIRsharing.org: MAR; MAR databases; DOI: https://doi.org/10.25504/FAIRsharing.SnTbUa; Last edited: Dec. 19, 2019, 11:06 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
MAR
metasource: Fairsharing.orgversion: FAIRsharing.org: MAR; MAR databases; DOI: https://doi.org/10.25504/FAIRsharing.SnTbUa; Last edited: Dec. 19, 2019, 11:06 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
MMP
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Marine Metagenomics Portal
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:00.047861
mmp
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:00.047861
Other names: MAR, MMP, Marine Metagenomics Portal, mmp
Names
More detailed information about this field from each metasource.
MAR databases
metasource: Fairsharing.orgversion: FAIRsharing.org: MAR; MAR databases; DOI: https://doi.org/10.25504/FAIRsharing.SnTbUa; Last edited: Dec. 19, 2019, 11:06 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
MAR
metasource: Fairsharing.orgversion: FAIRsharing.org: MAR; MAR databases; DOI: https://doi.org/10.25504/FAIRsharing.SnTbUa; Last edited: Dec. 19, 2019, 11:06 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
MMP
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Marine Metagenomics Portal
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:00.047861
mmp
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:00.047861
The MAR databases is a collection of manually curated marine microbial contextual and sequence databases, based at the Marine Metagenomics Portal. This was developed as a part of the ELIXIR EXCELERATE project in 2017 and is maintained by The Center for Bioinformatics (SfB) at the UiT The Arctic University of Norway. SfB is hosting the UiT node of ELIXIR Norway. The MarRef, MarDb, MarFun and MarCat contextual databases are built by compiling data from a number of public available sequence, taxonomy and literature databases in a semi-automatic fashion.
Description
More detailed information about this field from each metasource.
The MAR databases is a collection of manually curated marine microbial contextual and sequence databases, based at the Marine Metagenomics Portal. This was developed as a part of the ELIXIR EXCELERATE project in 2017 and is maintained by The Center for Bioinformatics (SfB) at the UiT The Arctic University of Norway. SfB is hosting the UiT node of ELIXIR Norway. The MarRef, MarDb, MarFun and MarCat contextual databases are built by compiling data from a number of public available sequence, taxonomy and literature databases in a semi-automatic fashion.
metasource: Fairsharing.orgversion: FAIRsharing.org: MAR; MAR databases; DOI: https://doi.org/10.25504/FAIRsharing.SnTbUa; Last edited: Dec. 19, 2019, 11:06 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
The mission of Marine Metagenomics Portal (MMP) is to provide the marine scientific community with high-quality curated and freely accessible microbial genomics and metagenomics resources.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:00.047861
Webpage:
https://mmp.sfb.uit.no/databases/Webpage
More detailed information about this field from each metasource.
https://mmp.sfb.uit.no/databases/
metasource: Fairsharing.orgversion: FAIRsharing.org: MAR; MAR databases; DOI: https://doi.org/10.25504/FAIRsharing.SnTbUa; Last edited: Dec. 19, 2019, 11:06 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
https://mmp.sfb.uit.no/
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:00.047861
Licence:
Name: Creative Commons Attribution-NoDerivatives 4.0 International (CC BY-ND 4.0)Licence name
More detailed information about this field from each metasource.
Creative Commons Attribution-NoDerivatives 4.0 International (CC BY-ND 4.0)
metasource: Fairsharing.orgversion: FAIRsharing.org: MAR; MAR databases; DOI: https://doi.org/10.25504/FAIRsharing.SnTbUa; Last edited: Dec. 19, 2019, 11:06 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
CC-BY-NC-3.0
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:00.047861
Licence URL
More detailed information about this field from each metasource.
https://creativecommons.org/licenses/by-nd/4.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: MAR; MAR databases; DOI: https://doi.org/10.25504/FAIRsharing.SnTbUa; Last edited: Dec. 19, 2019, 11:06 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
The MAR databases: development and implementation of databases specific for marine metagenomics
PMID: 29106641
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:00.047861
http://identifiers.org/pubmed/PMID: 29106641?resource=MIR:00100023
metasource: Fairsharing.org
version: FAIRsharing.org: MAR; MAR databases; DOI: https://doi.org/10.25504/FAIRsharing.SnTbUa; Last edited: Dec. 19, 2019, 11:06 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
http://dx.doi.org/10.1093/nar/gkx1036
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
The MAR databases: development and implementation of databases specific for marine metagenomics
PMID: 29106641
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:00.047861
http://identifiers.org/pubmed/PMID: 29106641?resource=MIR:00100023
metasource: Fairsharing.orgversion: FAIRsharing.org: MAR; MAR databases; DOI: https://doi.org/10.25504/FAIRsharing.SnTbUa; Last edited: Dec. 19, 2019, 11:06 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
http://dx.doi.org/10.1093/nar/gkx1036
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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The MAR databases: development and implementation of databases specific for marine metagenomics
PubMed citations: 23.
23 articles citing: The MAR databases: development and implementation of databases specific for marine metagenomics
Ecosystem-specific microbiota and microbiome databases in the era of big data. PMID:35842686
Biosynthetic potential of the global ocean microbiome. PMID:35732736
The OceanDNA MAG catalog contains over 50,000 prokaryotic genomes originated from various marine environments. PMID:35715423
The Ocean Gene Atlas v2.0: online exploration of the biogeography and phylogeny of plankton genes. PMID:35687095
Metagenome-assembled genomes of phytoplankton microbiomes from the Arctic and Atlantic Oceans. PMID:35484634
Critical Assessment of Metagenome Interpretation: the second round of challenges. PMID:35396482
Microbial Community Dynamics during Biodegradation of Crude Oil and Its Response to Biostimulation in Svalbard Seawater at Low Temperature. PMID:34946026
Structure and evolutionary trace-assisted screening of a residue swapping the substrate ambiguity and chiral specificity in an esterase. PMID:33995922
The microbiome of deep-sea fish reveals new microbial species and a sparsity of antibiotic resistance genes. PMID:33970781
Evolutionary history of dimethylsulfoniopropionate (DMSP) demethylation enzyme DmdA in marine bacteria. PMID:32974097
Planet Microbe: a platform for marine microbiology to discover and analyze interconnected 'omics and environmental data. PMID:32735679
Terabase-scale metagenome coassembly with MetaHipMer. PMID:32612216
Genomic Blueprint of Glycine Betaine Metabolism in Coral Metaorganisms and Their Contribution to Reef Nitrogen Budgets. PMID:32438323
Genome Sequences of 72 Bacterial Strains Isolated from Ectocarpus subulatus: A Resource for Algal Microbiology. PMID:31841132
Charting the Complexity of the Marine Microbiome through Single-Cell Genomics. PMID:31835036
Antibiotic Resistome Biomarkers associated to the Pelagic Sediments of the Gulfs of Kathiawar Peninsula and Arabian Sea. PMID:31754151
Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome. PMID:31730850
Bioinformatics for Marine Products: An Overview of Resources, Bottlenecks, and Perspectives. PMID:31614509
Mining biosynthetic gene clusters in Virgibacillus genomes. PMID:31481022
Closely-related Photobacterium strains comprise the majority of bacteria in the gut of migrating Atlantic cod (Gadus morhua). PMID:30995938
Co-culture and biogeography of Prochlorococcus and SAR11. PMID:30742057
Functional annotation of orthologs in metagenomes: a case study of genes for the transformation of oceanic dimethylsulfoniopropionate. PMID:30643200
Genomes OnLine database (GOLD) v.7: updates and new features. PMID:30357420 - http://identifiers.org/pubmed/PMID: 29106641?resource=MIR:00100023
- http://dx.doi.org/10.1093/nar/gkx1036
Tags:
Tags
More detailed information about this field from each metasource.
dna sequence data
metasource: Fairsharing.org
version: FAIRsharing.org: MAR; MAR databases; DOI: https://doi.org/10.25504/FAIRsharing.SnTbUa; Last edited: Dec. 19, 2019, 11:06 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
genome annotation
metasource: Fairsharing.org
version: FAIRsharing.org: MAR; MAR databases; DOI: https://doi.org/10.25504/FAIRsharing.SnTbUa; Last edited: Dec. 19, 2019, 11:06 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
marine environment
metasource: Fairsharing.org
version: FAIRsharing.org: MAR; MAR databases; DOI: https://doi.org/10.25504/FAIRsharing.SnTbUa; Last edited: Dec. 19, 2019, 11:06 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
marine metagenome
metasource: Fairsharing.org
version: FAIRsharing.org: MAR; MAR databases; DOI: https://doi.org/10.25504/FAIRsharing.SnTbUa; Last edited: Dec. 19, 2019, 11:06 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
metagenome
metasource: Fairsharing.org
version: FAIRsharing.org: MAR; MAR databases; DOI: https://doi.org/10.25504/FAIRsharing.SnTbUa; Last edited: Dec. 19, 2019, 11:06 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
marine biology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:00.047861
microbiology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:00.047861
metagenomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:00.047861
genomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:00.047861
data integration and warehousing
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:00.047861
data mining
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:00.047861
microbial ecology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:00.047861
sequence analysis
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:00.047861
taxonomy
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:00.047861
function analysis
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:00.047861
Tags
More detailed information about this field from each metasource.
dna sequence data
metasource: Fairsharing.orgversion: FAIRsharing.org: MAR; MAR databases; DOI: https://doi.org/10.25504/FAIRsharing.SnTbUa; Last edited: Dec. 19, 2019, 11:06 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
genome annotation
metasource: Fairsharing.orgversion: FAIRsharing.org: MAR; MAR databases; DOI: https://doi.org/10.25504/FAIRsharing.SnTbUa; Last edited: Dec. 19, 2019, 11:06 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
marine environment
metasource: Fairsharing.orgversion: FAIRsharing.org: MAR; MAR databases; DOI: https://doi.org/10.25504/FAIRsharing.SnTbUa; Last edited: Dec. 19, 2019, 11:06 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
marine metagenome
metasource: Fairsharing.orgversion: FAIRsharing.org: MAR; MAR databases; DOI: https://doi.org/10.25504/FAIRsharing.SnTbUa; Last edited: Dec. 19, 2019, 11:06 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
metagenome
metasource: Fairsharing.orgversion: FAIRsharing.org: MAR; MAR databases; DOI: https://doi.org/10.25504/FAIRsharing.SnTbUa; Last edited: Dec. 19, 2019, 11:06 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
marine biology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:00.047861
microbiology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:00.047861
metagenomics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:00.047861
genomics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:00.047861
data integration and warehousing
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:00.047861
data mining
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:00.047861
microbial ecology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:00.047861
sequence analysis
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:00.047861
taxonomy
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:00.047861
function analysis
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:00.047861
dna sequences genome annotation marine metagenome metagenome marine biology microbiology metagenomics genomics data integration and warehousing data mining microbial ecology sequence analysis taxonomy function analysis
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