PICKLE

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PICKLE

metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:37.573918

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pickle

metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:37.573918

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Other names: pickle

PICKLE (Protein InteraCtion KnowLedgebasE) is a meta-database for the direct protein-protein interactome of the human and the mouse proteomes, integrating publicly available source protein-protein interaction (PPI) databases via genetic information ontology. PICKLE integrates the primary PPI datasets by superimposing them on the UniProtKB/Swiss-Prot reviewed complete proteome of the human (RHCP) and the mouse (RMCP) ontology network without any a priori transformations.

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Publications:

Publications

More detailed information about this field from each metasource. ×

PICKLE 2.0: A human protein-protein interaction meta-database employing data integration via genetic information ontology
PMID: 29023571

metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:37.573918

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Reconstruction of the experimentally supported human protein interactome: what can we learn?
PMID: 24088582

metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:37.573918

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PICKLE 3.0: Enriching the human Meta-database with the mouse protein interactome extended via mouse-human orthology
PMID: 33367505

metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:37.573918

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http://dx.doi.org/10.13140/RG.2.2.16985.21608

metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:37.573918

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• PICKLE 2.0: A human protein-protein interaction meta-database employing data integration via genetic information ontology PubMed citations: 20.

  20 articles citing: PICKLE 2.0: A human protein-protein interaction meta-database employing data integration via genetic information ontology

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  How Far Are We from the Completion of the Human Protein Interactome Reconstruction? PMID:35053288

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  Identification of differentially expressed genes and pathways crosstalk analysis in Rheumatoid and Osteoarthritis using next-generation sequencing and protein-protein networks. PMID:34354452

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  Linking genotype to phenotype in multi-omics data of small sample. PMID:34256701

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  HIR V2: a human interactome resource for the biological interpretation of differentially expressed genes via gene set linkage analysis. PMID:33677507

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  UniProt-Related Documents (UniReD): assisting wet lab biologists in their quest on finding novel counterparts in a protein network. PMID:33575553

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  Elucidating the network features and evolutionary attributes of intra- and interspecific protein-protein interactions between human and pathogenic bacteria. PMID:33420198

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  Identifying Key Genes for Nasopharyngeal Carcinoma by Prioritized Consensus Differentially Expressed Genes Caused by Aberrant Methylation. PMID:33403044

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  PICKLE 3.0: Enriching the human Meta-database with the mouse protein interactome extended via mouse-human orthology. PMID:33367505

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  Deciphering cell-cell interactions and communication from gene expression. PMID:33168968

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  IHP-PING-generating integrated human protein-protein interaction networks on-the-fly. PMID:33129201

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  Cell-Type-Specific Proteogenomic Signal Diffusion for Integrating Multi-Omics Data Predicts Novel Schizophrenia Risk Genes. PMID:32984858

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  A flexible network-based imputing-and-fusing approach towards the identification of cell types from single-cell RNA-seq data. PMID:32527285

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  Mutation severity spectrum of rare alleles in the human genome is predictive of disease type. PMID:32413045

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  A Guide to Conquer the Biological Network Era Using Graph Theory. PMID:32083072

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  Membrane protein-regulated networks across human cancers. PMID:31311925

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  tRNA Fragments Show Intertwining with mRNAs of Specific Repeat Content and Have Links to Disparities. PMID:30996049

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  A High Efficient Biological Language Model for Predicting Protein⁻Protein Interactions. PMID:30717470

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  Evolution of In Silico Strategies for Protein-Protein Interaction Drug Discovery. PMID:30082644

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  Model-based detection and analysis of introgressed Neanderthal ancestry in modern humans. PMID:29603507

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  Race Disparities in the Contribution of miRNA Isoforms and tRNA-Derived Fragments to Triple-Negative Breast Cancer. PMID:29229607
• Reconstruction of the experimentally supported human protein interactome: what can we learn? PubMed citations: 13.

  13 articles citing: Reconstruction of the experimentally supported human protein interactome: what can we learn?

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  How Far Are We from the Completion of the Human Protein Interactome Reconstruction? PMID:35053288

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  Unraveling the surface glycoprotein interaction network by integrating chemical crosslinking with MS-based proteomics. PMID:34163979

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  PICKLE 3.0: Enriching the human Meta-database with the mouse protein interactome extended via mouse-human orthology. PMID:33367505

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  Cell-Type-Specific Proteogenomic Signal Diffusion for Integrating Multi-Omics Data Predicts Novel Schizophrenia Risk Genes. PMID:32984858

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  A flexible network-based imputing-and-fusing approach towards the identification of cell types from single-cell RNA-seq data. PMID:32527285

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  Evolution of In Silico Strategies for Protein-Protein Interaction Drug Discovery. PMID:30082644

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  Toward Small-Molecule Inhibition of Protein-Protein Interactions: General Aspects and Recent Progress in Targeting Costimulatory and Coinhibitory (Immune Checkpoint) Interactions. PMID:29848279

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  Model-based detection and analysis of introgressed Neanderthal ancestry in modern humans. PMID:29603507

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  Race Disparities in the Contribution of miRNA Isoforms and tRNA-Derived Fragments to Triple-Negative Breast Cancer. PMID:29229607

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  PICKLE 2.0: A human protein-protein interaction meta-database employing data integration via genetic information ontology. PMID:29023571

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  TNF superfamily protein-protein interactions: feasibility of small- molecule modulation. PMID:25706111

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  The human plasma membrane peripherome: visualization and analysis of interactions. PMID:25057483

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  Protein interaction network for Alzheimer's disease using computational approach. PMID:24391359
• PICKLE 3.0: Enriching the human Meta-database with the mouse protein interactome extended via mouse-human orthology PubMed citations: 5.

  5 articles citing: PICKLE 3.0: Enriching the human Meta-database with the mouse protein interactome extended via mouse-human orthology

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  Screening and Comprehensive Analysis of Cancer-Associated tRNA-Derived Fragments. PMID:35095997

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  How Far Are We from the Completion of the Human Protein Interactome Reconstruction? PMID:35053288

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  Mouse Genome Informatics (MGI): latest news from MGD and GXD. PMID:34698891

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  The Dynamic Network of RNP RNase P Subunits. PMID:34638646

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  mPPI: a database extension to visualize structural interactome in a one-to-many manner. PMID:34156447
• http://dx.doi.org/10.13140/RG.2.2.16985.21608

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More detailed information about this field from each metasource. ×

systems biology

metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:37.573918

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human biology

metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:37.573918

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protein interactions

metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:37.573918

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human genetics

metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:37.573918

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systems medicine

metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:37.573918

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systems biology human protein interaction human genetics systems medicine