Tag: computational biology

VIPERdb is a database for icosahedral virus capsid structures. The emphasis is on providing data from structural and computational analyses on these systems, as well as high quality renderings for visual exploration.

bio.tools is a registry of information about bioinformatics software and data services. It was created to help researchers in biological and biomedical science to find and use such resources.

DNASU is a central repository for plasmid clones and collections. Currently we store and distribute over 197,000 plasmids including 75,000 human and mouse plasmids, full genome collections, the protein expression plasmids from the Protein Structure I ...

Norine is a platform that includes a database of nonribosomal peptides together with tools for their analysis. Norine currently contains more than 1000 peptides.

The ITHANET Portal represents an expanding resource for clinicians and researchers dealing with haemoglobinopathies and a port of call for patients in search of professional advice. The ITHANET Portal integrates information on news, events, clinical ...

Orphanet Rare Diseases Ontology (ORDO) provide a structured vocabulary for rare diseases capturing relationships between diseases, genes and other relevant features which will form a useful resource for the computational analysis of rare diseases.

Free and extendable opensource platform for objective performance comparison of arbitrary Clustering Methods on different datasets.

Brings together Docker images with standardized, machine-readable ways of describing and running the tools contained within.

Inferring synthetic lethal interactions from mutual exclusivity of genetic events in cancer. Australia.

Datanator is an integrated database of genomic and biochemical data designed to help investigators find data about specific molecules and reactions in specific organisms and specific environments for meta-analyses and mechanistic models. Datanator cu ...

Protein Complex Prediction from Protein Interaction Networks.

The National Center for Research Resources' Yeast Resource Center is located at the University of Washington in Seattle, Washington. The mission of the center is to facilitate the identification and characterization of protein complexes in the yeast ...

BioSimulators is a registry of containerized biosimulation tools that provide consistent command-line interfaces. The BioSimulations web application helps investigators browse this registry to find simulation tools that have the capabilities (support ...

TwinsUK follows the lives of adult twins to understand how genetic variation relates to health and ageing. Over 30 years, collected data comprises self-reported, physical and cognitive measures, biochemical measures, 'omics and a wealth of biosamples ...

A database of structurally annotated peptides

Class-I HLA alleles Database

Interactive encyclopedia of proteins, RNA, DNA and other molecules with 3D structures.

SalivaDB is a comprehensive and manually-curated database for salivary biomarkers found in Homo sapiens. It contains 15,821 entries for 7729 unique salivary biomarkers consisting of proteins, metabolites, microbes, miRNA, and genes.

CancerPDF is a manually curated database of cancer-associated peptides found in different human bodyfluids (e.g., serum, urine, plasma and saliva).