Mammalian Transcriptomic Database
Names
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Mammalian Transcriptomic Database
metasource: Fairsharing.org
version: None
metasource: re3data.org
version: re3data.org: Mammalian Transcriptomic Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3J35P last accessed: 2022-11-04
MTD
metasource: Fairsharing.org
version: None
metasource: re3data.org
version: re3data.org: Mammalian Transcriptomic Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3J35P last accessed: 2022-11-04
Names
More detailed information about this field from each metasource.
Mammalian Transcriptomic Database
metasource: Fairsharing.orgversion: None
metasource: re3data.org
version: re3data.org: Mammalian Transcriptomic Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3J35P last accessed: 2022-11-04
MTD
metasource: Fairsharing.orgversion: None
metasource: re3data.org
version: re3data.org: Mammalian Transcriptomic Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3J35P last accessed: 2022-11-04
Names
More detailed information about this field from each metasource.
Mammalian Transcriptomic Database
metasource: Fairsharing.orgversion: None
metasource: re3data.org
version: re3data.org: Mammalian Transcriptomic Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3J35P last accessed: 2022-11-04
MTD
metasource: Fairsharing.orgversion: None
metasource: re3data.org
version: re3data.org: Mammalian Transcriptomic Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3J35P last accessed: 2022-11-04
The Mammalian Transcriptomic Database (MTD) was created to store information on mammalian transcriptomes. The MTD allows browsing of genes based on their neighboring genomic coordinates or joint KEGG pathway and provides expression information on exons, transcripts and genes via a genome browser. The MTD also allows comparative transcriptomic analyses. The data in this resource has not been updated recently, and therefore we have marked this record as Uncertain. Please get in touch if you know the current status of this resource.
Description
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The Mammalian Transcriptomic Database (MTD) was created to store information on mammalian transcriptomes. The MTD allows browsing of genes based on their neighboring genomic coordinates or joint KEGG pathway and provides expression information on exons, transcripts and genes via a genome browser. The MTD also allows comparative transcriptomic analyses. The data in this resource has not been updated recently, and therefore we have marked this record as Uncertain. Please get in touch if you know the current status of this resource.
metasource: Fairsharing.orgversion: None
MTD is focused on mammalian transcriptomes with a current version that contains data from humans, mice, rats and pigs. Regarding the core features, the MTD browses genes based on their neighboring genomic coordinates or joint KEGG pathway and provides expression information on exons, transcripts, and genes by integrating them into a genome browser. We developed a novel nomenclature for each transcript that considers its genomic position and transcriptional features.
metasource: re3data.orgversion: re3data.org: Mammalian Transcriptomic Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3J35P last accessed: 2022-11-04
Webpage:
http://mtd.cbi.ac.cn/Webpage
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http://mtd.cbi.ac.cn/
metasource: Fairsharing.orgversion: None
http://mtd.cbi.ac.cn/index.php
metasource: re3data.orgversion: re3data.org: Mammalian Transcriptomic Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3J35P last accessed: 2022-11-04
Licence:
Name: Creative Commons Attribution 3.0 China Mainland (CC BY 3.0 CN)Licence name
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Creative Commons Attribution 3.0 China Mainland (CC BY 3.0 CN)
metasource: Fairsharing.orgversion: None
other
metasource: re3data.orgversion: re3data.org: Mammalian Transcriptomic Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3J35P last accessed: 2022-11-04
Licence URL
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https://creativecommons.org/licenses/by/3.0/cn/
metasource: Fairsharing.orgversion: None
http://bigd.big.ac.cn/mission
metasource: re3data.orgversion: re3data.org: Mammalian Transcriptomic Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3J35P last accessed: 2022-11-04
Publications:
Publications
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MTD: a mammalian transcriptomic database to explore gene expression and regulation
PMID: 26822098
metasource: Fairsharing.org
version: None
Publications
More detailed information about this field from each metasource.
MTD: a mammalian transcriptomic database to explore gene expression and regulation
PMID: 26822098
metasource: Fairsharing.org
version: None
-
MTD: a mammalian transcriptomic database to explore gene expression and regulation
PubMed citations: 9.
9 articles citing: MTD: a mammalian transcriptomic database to explore gene expression and regulation
Processing and Analysis of RNA-seq Data from Public Resources. PMID:33606253
A novel computational model for predicting potential LncRNA-disease associations based on both direct and indirect features of LncRNA-disease pairs. PMID:33267800
Systematic integrated analysis of genetic and epigenetic variation in diabetic kidney disease. PMID:33144501
Unifying cancer and normal RNA sequencing data from different sources. PMID:29664468
scRNASeqDB: A Database for RNA-Seq Based Gene Expression Profiles in Human Single Cells. PMID:29206167
Database Resources of the BIG Data Center in 2018. PMID:29036542
In silico design of context-responsive mammalian promoters with user-defined functionality. PMID:28977454
The BIG Data Center: from deposition to integration to translation. PMID:27899658
ANGIOGENES: knowledge database for protein-coding and noncoding RNA genes in endothelial cells. PMID:27582018
Tags:
Tags
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gene expression
metasource: Fairsharing.org
version: None
metasource: re3data.org
version: re3data.org: Mammalian Transcriptomic Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3J35P last accessed: 2022-11-04
gene expression data
metasource: Fairsharing.org
version: None
rna sequencing
metasource: Fairsharing.org
version: None
rna
metasource: re3data.org
version: re3data.org: Mammalian Transcriptomic Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3J35P last accessed: 2022-11-04
rna-seq
metasource: re3data.org
version: re3data.org: Mammalian Transcriptomic Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3J35P last accessed: 2022-11-04
sequence read archive (sra)
metasource: re3data.org
version: re3data.org: Mammalian Transcriptomic Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3J35P last accessed: 2022-11-04
cell lines
metasource: re3data.org
version: re3data.org: Mammalian Transcriptomic Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3J35P last accessed: 2022-11-04
genetics
metasource: re3data.org
version: re3data.org: Mammalian Transcriptomic Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3J35P last accessed: 2022-11-04
genomics
metasource: re3data.org
version: re3data.org: Mammalian Transcriptomic Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3J35P last accessed: 2022-11-04
human
metasource: re3data.org
version: re3data.org: Mammalian Transcriptomic Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3J35P last accessed: 2022-11-04
mouse
metasource: re3data.org
version: re3data.org: Mammalian Transcriptomic Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3J35P last accessed: 2022-11-04
pig
metasource: re3data.org
version: re3data.org: Mammalian Transcriptomic Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3J35P last accessed: 2022-11-04
rat
metasource: re3data.org
version: re3data.org: Mammalian Transcriptomic Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3J35P last accessed: 2022-11-04
tissues
metasource: re3data.org
version: re3data.org: Mammalian Transcriptomic Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3J35P last accessed: 2022-11-04
Tags
More detailed information about this field from each metasource.
gene expression
metasource: Fairsharing.orgversion: None
metasource: re3data.org
version: re3data.org: Mammalian Transcriptomic Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3J35P last accessed: 2022-11-04
gene expression data
metasource: Fairsharing.orgversion: None
rna sequencing
metasource: Fairsharing.orgversion: None
rna
metasource: re3data.orgversion: re3data.org: Mammalian Transcriptomic Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3J35P last accessed: 2022-11-04
rna-seq
metasource: re3data.orgversion: re3data.org: Mammalian Transcriptomic Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3J35P last accessed: 2022-11-04
sequence read archive (sra)
metasource: re3data.orgversion: re3data.org: Mammalian Transcriptomic Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3J35P last accessed: 2022-11-04
cell lines
metasource: re3data.orgversion: re3data.org: Mammalian Transcriptomic Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3J35P last accessed: 2022-11-04
genetics
metasource: re3data.orgversion: re3data.org: Mammalian Transcriptomic Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3J35P last accessed: 2022-11-04
genomics
metasource: re3data.orgversion: re3data.org: Mammalian Transcriptomic Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3J35P last accessed: 2022-11-04
human
metasource: re3data.orgversion: re3data.org: Mammalian Transcriptomic Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3J35P last accessed: 2022-11-04
mouse
metasource: re3data.orgversion: re3data.org: Mammalian Transcriptomic Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3J35P last accessed: 2022-11-04
pig
metasource: re3data.orgversion: re3data.org: Mammalian Transcriptomic Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3J35P last accessed: 2022-11-04
rat
metasource: re3data.orgversion: re3data.org: Mammalian Transcriptomic Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3J35P last accessed: 2022-11-04
tissues
metasource: re3data.orgversion: re3data.org: Mammalian Transcriptomic Database; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3J35P last accessed: 2022-11-04
gene expression gene expression rna sequence rna rna sequence sequence read archive (sra) cell lines genetics genomics human mouse pig rat tissues
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