PSIbase
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PSIbase is a molecular interaction database based on PSIMAP (PDB, SCOP) that focuses on structural interaction of proteins and their domains. This resource has been marked as Uncertain because its project home can no longer be found. Please get in touch if you have any information about this resource.
Description
More detailed information about this field from each metasource.
PSIbase is a molecular interaction database based on PSIMAP (PDB, SCOP) that focuses on structural interaction of proteins and their domains. This resource has been marked as Uncertain because its project home can no longer be found. Please get in touch if you have any information about this resource.
metasource: Fairsharing.orgversion: FAIRsharing.org: PSIbase; PSIbase; DOI: https://doi.org/10.25504/FAIRsharing.29jzvb; Last edited: June 25, 2021, 2:44 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
Webpage:
http://psibase.kobic.re.kr/Webpage
More detailed information about this field from each metasource.
http://psibase.kobic.re.kr/
metasource: Fairsharing.orgversion: FAIRsharing.org: PSIbase; PSIbase; DOI: https://doi.org/10.25504/FAIRsharing.29jzvb; Last edited: June 25, 2021, 2:44 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
PSIbase: a database of Protein Structural Interactome map (PSIMAP)
PMID: 15749693
metasource: Fairsharing.org
version: FAIRsharing.org: PSIbase; PSIbase; DOI: https://doi.org/10.25504/FAIRsharing.29jzvb; Last edited: June 25, 2021, 2:44 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
Publications
More detailed information about this field from each metasource.
PSIbase: a database of Protein Structural Interactome map (PSIMAP)
PMID: 15749693
metasource: Fairsharing.org
version: FAIRsharing.org: PSIbase; PSIbase; DOI: https://doi.org/10.25504/FAIRsharing.29jzvb; Last edited: June 25, 2021, 2:44 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
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PSIbase: a database of Protein Structural Interactome map (PSIMAP)
PubMed citations: 35.
35 articles citing: PSIbase: a database of Protein Structural Interactome map (PSIMAP)
Advances in integrative structural biology: Towards understanding protein complexes in their cellular context. PMID:33425253
Building Bridges Between Structural and Network-Based Systems Biology. PMID:30656572
Binding Direction-Based Two-Dimensional Flattened Contact Area Computing Algorithm for Protein-Protein Interactions. PMID:29027921
Study of intra-inter species protein-protein interactions for potential drug targets identification and subsequent drug design for Escherichia coli O104:H4 C277-11. PMID:28401513
In silico identification of essential proteins in Corynebacterium pseudotuberculosis based on protein-protein interaction networks. PMID:27814699
DOMMINO 2.0: integrating structurally resolved protein-, RNA-, and DNA-mediated macromolecular interactions. PMID:26827237
iPfam: a database of protein family and domain interactions found in the Protein Data Bank. PMID:24297255
3did: a catalog of domain-based interactions of known three-dimensional structure. PMID:24081580
Interactome3D: adding structural details to protein networks. PMID:23399932
Computational prediction of protein-protein interactions in Leishmania predicted proteomes. PMID:23251492
Computational analysis of interactomes: current and future perspectives for bioinformatics approaches to model the host-pathogen interaction space. PMID:22750305
DOMMINO: a database of macromolecular interactions. PMID:22135305
InterEvol database: exploring the structure and evolution of protein complex interfaces. PMID:22053089
The development of an affinity evaluation and prediction system by using protein-protein docking simulations and parameter tuning. PMID:21918611
DIMA 3.0: Domain Interaction Map. PMID:21097782
The protein common interface database (ProtCID)--a comprehensive database of interactions of homologous proteins in multiple crystal forms. PMID:21036862
Struct2Net: a web service to predict protein-protein interactions using a structure-based approach. PMID:20513650
MitoInteractome: mitochondrial protein interactome database, and its application in 'aging network' analysis. PMID:19958484
PutidaNET: interactome database service and network analysis of Pseudomonas putida KT2440. PMID:19958481
PepX: a structural database of non-redundant protein-peptide complexes. PMID:19880386
Deciphering peculiar protein-protein interacting modules in Deinococcus radiodurans. PMID:19356244
A survey of available tools and web servers for analysis of protein-protein interactions and interfaces. PMID:19240123
Network integration and graph analysis in mammalian molecular systems biology. PMID:19045817
Statistical analysis of interface similarity in crystals of homologous proteins. PMID:18599072
MassNet: a functional annotation service for protein mass spectrometry data. PMID:18448467
SynechoNET: integrated protein-protein interaction database of a model cyanobacterium Synechocystis sp. PCC 6803. PMID:18315852
Predicting the interactome of Xanthomonas oryzae pathovar oryzae for target selection and DB service. PMID:18215330
Protein interactions from complexes: a structural perspective. PMID:17538689
Specificity in protein interactions and its relationship with sequence diversity and coevolution. PMID:17468399
SNAPPI-DB: a database and API of Structures, iNterfaces and Alignments for Protein-Protein Interactions. PMID:17202171
3D complex: a structural classification of protein complexes. PMID:17112313
Dynamic protein domains: identification, interdependence, and stability. PMID:16632509
SCOWLP: a web-based database for detailed characterization and visualization of protein interfaces. PMID:16512892
SCOPPI: a structural classification of protein-protein interfaces. PMID:16381874
A protein domain interaction interface database: InterPare. PMID:16122378
Tags:
Tags
More detailed information about this field from each metasource.
molecular structure
metasource: Fairsharing.org
version: FAIRsharing.org: PSIbase; PSIbase; DOI: https://doi.org/10.25504/FAIRsharing.29jzvb; Last edited: June 25, 2021, 2:44 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
protein
metasource: Fairsharing.org
version: FAIRsharing.org: PSIbase; PSIbase; DOI: https://doi.org/10.25504/FAIRsharing.29jzvb; Last edited: June 25, 2021, 2:44 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
structure
metasource: Fairsharing.org
version: FAIRsharing.org: PSIbase; PSIbase; DOI: https://doi.org/10.25504/FAIRsharing.29jzvb; Last edited: June 25, 2021, 2:44 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
Tags
More detailed information about this field from each metasource.
molecular structure
metasource: Fairsharing.orgversion: FAIRsharing.org: PSIbase; PSIbase; DOI: https://doi.org/10.25504/FAIRsharing.29jzvb; Last edited: June 25, 2021, 2:44 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
protein
metasource: Fairsharing.orgversion: FAIRsharing.org: PSIbase; PSIbase; DOI: https://doi.org/10.25504/FAIRsharing.29jzvb; Last edited: June 25, 2021, 2:44 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
structure
metasource: Fairsharing.orgversion: FAIRsharing.org: PSIbase; PSIbase; DOI: https://doi.org/10.25504/FAIRsharing.29jzvb; Last edited: June 25, 2021, 2:44 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
molecular structure protein structure
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