Minimal Metagenome Sequence Analysis Standard
Names
More detailed information about this field from each metasource.
Minimal Metagenome Sequence Analysis Standard
metasource: Fairsharing.org
version: FAIRsharing.org: MINIMESS; Minimal Metagenome Sequence Analysis Standard; DOI: https://doi.org/10.25504/FAIRsharing.ckg5a2; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
MINIMESS
metasource: Fairsharing.org
version: FAIRsharing.org: MINIMESS; Minimal Metagenome Sequence Analysis Standard; DOI: https://doi.org/10.25504/FAIRsharing.ckg5a2; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Names
More detailed information about this field from each metasource.
Minimal Metagenome Sequence Analysis Standard
metasource: Fairsharing.orgversion: FAIRsharing.org: MINIMESS; Minimal Metagenome Sequence Analysis Standard; DOI: https://doi.org/10.25504/FAIRsharing.ckg5a2; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
MINIMESS
metasource: Fairsharing.orgversion: FAIRsharing.org: MINIMESS; Minimal Metagenome Sequence Analysis Standard; DOI: https://doi.org/10.25504/FAIRsharing.ckg5a2; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Names
More detailed information about this field from each metasource.
Minimal Metagenome Sequence Analysis Standard
metasource: Fairsharing.orgversion: FAIRsharing.org: MINIMESS; Minimal Metagenome Sequence Analysis Standard; DOI: https://doi.org/10.25504/FAIRsharing.ckg5a2; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
MINIMESS
metasource: Fairsharing.orgversion: FAIRsharing.org: MINIMESS; Minimal Metagenome Sequence Analysis Standard; DOI: https://doi.org/10.25504/FAIRsharing.ckg5a2; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
A proposed set of minimal standard analyses necessary for proper interpretation of meta-omic data and to allow comparative metagenomics and metatranscriptomics. Please note: We cannot find an up-to-date website for this resource. As such, we have marked it as Uncertain. Please contact us if you have any information on the current status of this resource.
Description
More detailed information about this field from each metasource.
A proposed set of minimal standard analyses necessary for proper interpretation of meta-omic data and to allow comparative metagenomics and metatranscriptomics. Please note: We cannot find an up-to-date website for this resource. As such, we have marked it as Uncertain. Please contact us if you have any information on the current status of this resource.
metasource: Fairsharing.orgversion: FAIRsharing.org: MINIMESS; Minimal Metagenome Sequence Analysis Standard; DOI: https://doi.org/10.25504/FAIRsharing.ckg5a2; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Webpage:
http://mibbi.sf.net/projects/MINIMESS.shtmlWebpage
More detailed information about this field from each metasource.
http://mibbi.sf.net/projects/MINIMESS.shtml
metasource: Fairsharing.orgversion: FAIRsharing.org: MINIMESS; Minimal Metagenome Sequence Analysis Standard; DOI: https://doi.org/10.25504/FAIRsharing.ckg5a2; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
Get the most out of your metagenome: computational analysis of environmental sequence data
PMID: 17936679
metasource: Fairsharing.org
version: FAIRsharing.org: MINIMESS; Minimal Metagenome Sequence Analysis Standard; DOI: https://doi.org/10.25504/FAIRsharing.ckg5a2; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Publications
More detailed information about this field from each metasource.
Get the most out of your metagenome: computational analysis of environmental sequence data
PMID: 17936679
metasource: Fairsharing.org
version: FAIRsharing.org: MINIMESS; Minimal Metagenome Sequence Analysis Standard; DOI: https://doi.org/10.25504/FAIRsharing.ckg5a2; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
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Get the most out of your metagenome: computational analysis of environmental sequence data
PubMed citations: 59.
59 articles citing: Get the most out of your metagenome: computational analysis of environmental sequence data
Reporting guidelines for human microbiome research: the STORMS checklist. PMID:34789871
From bag-of-genes to bag-of-genomes: metabolic modelling of communities in the era of metagenome-assembled genomes. PMID:32670511
MetagenoNets: comprehensive inference and meta-insights for microbial correlation networks. PMID:32338757
Pre- and post-sequencing recommendations for functional annotation of human fecal metagenomes. PMID:32093654
The Planktonic Core Microbiome and Core Functions in the Cattle Rumen by Next Generation Sequencing. PMID:30319585
A multi-source domain annotation pipeline for quantitative metagenomic and metatranscriptomic functional profiling. PMID:30153857
Discovering viral genomes in human metagenomic data by predicting unknown protein families. PMID:29311716
Assessing Species Diversity Using Metavirome Data: Methods and Challenges. PMID:29085573
Practical considerations for large-scale gut microbiome studies. PMID:28830090
Relating genomic characteristics to environmental preferences and ubiquity in different microbial taxa. PMID:28662636
Comparative Metagenomic Analysis Reveals Mechanisms for Stress Response in Hypoliths from Extreme Hyperarid Deserts. PMID:27503299
Deciphering ocean carbon in a changing world. PMID:26951682
Long-Term Oil Contamination Alters the Molecular Ecological Networks of Soil Microbial Functional Genes. PMID:26870020
Effect of the Organic Loading Rate Increase and the Presence of Zeolite on Microbial Community Composition and Process Stability During Anaerobic Digestion of Chicken Wastes. PMID:26045158
Screening currency notes for microbial pathogens and antibiotic resistance genes using a shotgun metagenomic approach. PMID:26035208
Insights from 20 years of bacterial genome sequencing. PMID:25722247
Insights into novel antimicrobial compounds and antibiotic resistance genes from soil metagenomes. PMID:25278933
Microbial communities evolve faster in extreme environments. PMID:25158668
Isolation an Aldehyde Dehydrogenase Gene from Metagenomics Based on Semi-nest Touch-Down PCR. PMID:24426170
Bioinformatics for the Human Microbiome Project. PMID:23209389
Bioinformatic approaches for functional annotation and pathway inference in metagenomics data. PMID:23175748
Virtual metagenome reconstruction from 16S rRNA gene sequences. PMID:23149747
Computational tools for viral metagenomics and their application in clinical research. PMID:23062738
Genomic approaches to studying the human microbiota. PMID:22972298
Microbial interactions: from networks to models. PMID:22796884
Functional assignment of metagenomic data: challenges and applications. PMID:22772835
Characterization of a biogas-producing microbial community by short-read next generation DNA sequencing. PMID:22673110
Metagenomics and future perspectives in virus discovery. PMID:22440968
Microbial metabolomics. PMID:22379393
Characterization of the viral microbiome in patients with severe lower respiratory tract infections, using metagenomic sequencing. PMID:22355331
The human small intestinal microbiota is driven by rapid uptake and conversion of simple carbohydrates. PMID:22258098
Toward molecular trait-based ecology through integration of biogeochemical, geographical and metagenomic data. PMID:21407210
Meeting Report from the Second "Minimum Information for Biological and Biomedical Investigations" (MIBBI) workshop. PMID:21304730
Interplay of metagenomics and in vitro compartmentalization. PMID:21261880
Genomics of biological wastewater treatment. PMID:21261852
MTR: taxonomic annotation of short metagenomic reads using clustering at multiple taxonomic ranks. PMID:21127032
Dynamics in the mixed microbial concourse. PMID:21123647
MLTreeMap--accurate Maximum Likelihood placement of environmental DNA sequences into taxonomic and functional reference phylogenies. PMID:20687950
Comparative metagenomics of bathypelagic plankton and bottom sediment from the Sea of Marmara. PMID:20668488
Metagenomics: Facts and Artifacts, and Computational Challenges*. PMID:20648230
Composition, variability, and temporal stability of the intestinal microbiota of the elderly. PMID:20571116
Signal processing for metagenomics: extracting information from the soup. PMID:20436876
Integration of molecular functions at the ecosystemic level: breakthroughs and future goals of environmental genomics and post-genomics. PMID:20426792
The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes. PMID:20011103
Estimating DNA coverage and abundance in metagenomes using a gamma approximation. PMID:20008478
Computational resources in infectious disease: limitations and challenges. PMID:19855825
Windshield splatter analysis with the Galaxy metagenomic pipeline. PMID:19819906
Community-wide analysis of microbial genome sequence signatures. PMID:19698104
Identification of candidate structured RNAs in the marine organism 'Candidatus Pelagibacter ubique'. PMID:19531245
Comparative metagenomics of Daphnia symbionts. PMID:19383155
Identification of ribosomal RNA genes in metagenomic fragments. PMID:19346323
Laboratory procedures to generate viral metagenomes. PMID:19300441
TACOA: taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach. PMID:19210774
Prokaryotic genomes and diversity in surface ocean waters: interrogating the global ocean sampling metagenome. PMID:19201952
A computational screen for type I polyketide synthases in metagenomics shotgun data. PMID:18953415
MetaGeneAnnotator: detecting species-specific patterns of ribosomal binding site for precise gene prediction in anonymous prokaryotic and phage genomes. PMID:18940874
A molecular study of microbe transfer between distant environments. PMID:18612393
The minimum information about a genome sequence (MIGS) specification. PMID:18464787
Picoeukaryotic sequences in the Sargasso sea metagenome. PMID:18179699
Tags:
Tags
More detailed information about this field from each metasource.
dna sequence data
metasource: Fairsharing.org
version: FAIRsharing.org: MINIMESS; Minimal Metagenome Sequence Analysis Standard; DOI: https://doi.org/10.25504/FAIRsharing.ckg5a2; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
data transformation
metasource: Fairsharing.org
version: FAIRsharing.org: MINIMESS; Minimal Metagenome Sequence Analysis Standard; DOI: https://doi.org/10.25504/FAIRsharing.ckg5a2; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
deoxyribonucleic acid
metasource: Fairsharing.org
version: FAIRsharing.org: MINIMESS; Minimal Metagenome Sequence Analysis Standard; DOI: https://doi.org/10.25504/FAIRsharing.ckg5a2; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
metagenome
metasource: Fairsharing.org
version: FAIRsharing.org: MINIMESS; Minimal Metagenome Sequence Analysis Standard; DOI: https://doi.org/10.25504/FAIRsharing.ckg5a2; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Tags
More detailed information about this field from each metasource.
dna sequence data
metasource: Fairsharing.orgversion: FAIRsharing.org: MINIMESS; Minimal Metagenome Sequence Analysis Standard; DOI: https://doi.org/10.25504/FAIRsharing.ckg5a2; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
data transformation
metasource: Fairsharing.orgversion: FAIRsharing.org: MINIMESS; Minimal Metagenome Sequence Analysis Standard; DOI: https://doi.org/10.25504/FAIRsharing.ckg5a2; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
deoxyribonucleic acid
metasource: Fairsharing.orgversion: FAIRsharing.org: MINIMESS; Minimal Metagenome Sequence Analysis Standard; DOI: https://doi.org/10.25504/FAIRsharing.ckg5a2; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
metagenome
metasource: Fairsharing.orgversion: FAIRsharing.org: MINIMESS; Minimal Metagenome Sequence Analysis Standard; DOI: https://doi.org/10.25504/FAIRsharing.ckg5a2; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
dna sequences data transformation dna metagenome
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