DPRP

YeTFaSCo

Yeast Transcription Factor binding Site sequence Collection

SNP2TFBS

Regulatory SNPs affecting predicted transcription factor binding sites

TrSDB

Transcription factor database

PRODORIC2

TFBSbank

Transcription factor binding profiles deduced from ChIP-seq or ChIP-chip data

HTPSELEX

Transcription factor binding site sequences obtained using high-throughput SELEX method

BloodChIP

Transcription factor binding profiles in human haematopoietic stem/progenitor cells

OnTheFly

DNA-binding specificities of transcription factors in Drosophila

MachiBase

Drosophila melanogaster 5' mRNA transcription start site database

TTSMI

Triplex Target DNA Sites in the human genome

CollecTF

CollecTF is a database of transcription factor binding sites (TFBS) in the Bacteria domain. It aims at becoming a reference, highly-accessed database by relying on its ability to customize navigation ...

Gene Transcription Regulation Database

Gene Transcription Regulation Database (GTRD) is a database of transcription factor binding sites (TFBSs) identified by ChIP-seq experiments for human and mouse.

CTCF Binding Site Database

Experimentally identified and predicted CTCF binding sties

CMGSDB

Computational models for gene silencing in C. elegans

Regulatory Element Database for Drosophila

REDfly is a curated collection of known Drosophila transcriptional cis-regulatory modules (CRMs) and transcription factor binding sites (TFBSs). REDfly seeks to include all experimentally verified fly ...

Saccharomyces cerevisiae Transcription Factor Database

ScerTF is a database of position weight matrices (PWMs) for transcription factors in Saccharomyces species. It identifies a single matrix for each TF that best predicts in vivo data, providing metrics ...

TRED - Transcriptional Regulatory Element Database

Transcriptional regulatory element database

Greglist

G-quadruplex motifs and potentially G-quadruplex regulated genes

PlantProm

Plant promoter sequences