Cucurbit Genomics Database
Names
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Cucurbit Genomics Database
metasource: Fairsharing.org
version: FAIRsharing.org: CuGenDB; Cucurbit Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.PkY7Hl; Last edited: Jan. 9, 2019, 3:06 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
CuGenDB
metasource: Fairsharing.org
version: FAIRsharing.org: CuGenDB; Cucurbit Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.PkY7Hl; Last edited: Jan. 9, 2019, 3:06 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
Names
More detailed information about this field from each metasource.
Cucurbit Genomics Database
metasource: Fairsharing.orgversion: FAIRsharing.org: CuGenDB; Cucurbit Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.PkY7Hl; Last edited: Jan. 9, 2019, 3:06 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
CuGenDB
metasource: Fairsharing.orgversion: FAIRsharing.org: CuGenDB; Cucurbit Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.PkY7Hl; Last edited: Jan. 9, 2019, 3:06 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
Names
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Cucurbit Genomics Database
metasource: Fairsharing.orgversion: FAIRsharing.org: CuGenDB; Cucurbit Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.PkY7Hl; Last edited: Jan. 9, 2019, 3:06 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
CuGenDB
metasource: Fairsharing.orgversion: FAIRsharing.org: CuGenDB; Cucurbit Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.PkY7Hl; Last edited: Jan. 9, 2019, 3:06 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
The recent genome sequence assemblies of major cucurbit crop species, including cucumber, melon, watermelon and pumpkin have made it feasible to use advanced genomic approaches in cucurbit breeding. Under the CucCAP project (http://cuccap.org), the Cucurbit Genomics Database (CuGenDB) aims to accelerate the breeding progress of cucurbit crops. Tripal was used to help manage, store, distribute and analyze the large amount of recently generated genotype and phenotype data. CuGenDB integrates genetic, genomics, transcriptomics and other biological data.
Description
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The recent genome sequence assemblies of major cucurbit crop species, including cucumber, melon, watermelon and pumpkin have made it feasible to use advanced genomic approaches in cucurbit breeding. Under the CucCAP project (http://cuccap.org), the Cucurbit Genomics Database (CuGenDB) aims to accelerate the breeding progress of cucurbit crops. Tripal was used to help manage, store, distribute and analyze the large amount of recently generated genotype and phenotype data. CuGenDB integrates genetic, genomics, transcriptomics and other biological data.
metasource: Fairsharing.orgversion: FAIRsharing.org: CuGenDB; Cucurbit Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.PkY7Hl; Last edited: Jan. 9, 2019, 3:06 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
Webpage:
http://cucurbitgenomics.orgWebpage
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http://cucurbitgenomics.org
metasource: Fairsharing.orgversion: FAIRsharing.org: CuGenDB; Cucurbit Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.PkY7Hl; Last edited: Jan. 9, 2019, 3:06 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
Publications:
Publications
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Cucurbit Genomics Database (CuGenDB): a central portal for comparative and functional genomics of cucurbit crops
PMID: 30321383
metasource: Fairsharing.org
version: FAIRsharing.org: CuGenDB; Cucurbit Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.PkY7Hl; Last edited: Jan. 9, 2019, 3:06 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
Publications
More detailed information about this field from each metasource.
Cucurbit Genomics Database (CuGenDB): a central portal for comparative and functional genomics of cucurbit crops
PMID: 30321383
metasource: Fairsharing.org
version: FAIRsharing.org: CuGenDB; Cucurbit Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.PkY7Hl; Last edited: Jan. 9, 2019, 3:06 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
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Cucurbit Genomics Database (CuGenDB): a central portal for comparative and functional genomics of cucurbit crops
PubMed citations: 54.
54 articles citing: Cucurbit Genomics Database (CuGenDB): a central portal for comparative and functional genomics of cucurbit crops
LSAP: A Machine Learning Method for Leaf-Senescence-Associated Genes Prediction. PMID:35888183
Serial-Omics and Molecular Function Study Provide Novel Insight into Cucumber Variety Improvement. PMID:35736760
The Origin and Evolution of RNase T2 Family and Gametophytic Self-incompatibility System in Plants. PMID:35714207
Multiple Stressors in Vegetable Production: Insights for Trait-Based Crop Improvement in Cucurbits. PMID:35592574
Population-specific, recent positive selection signatures in cultivated Cucumis sativus L. (cucumber). PMID:35554526
Beta-Amylase and Phosphatidic Acid Involved in Recalcitrant Seed Germination of Chinese Chestnut. PMID:35401618
A Systematic Phylogenomic Classification of the Multidrug and Toxic Compound Extrusion Transporter Gene Family in Plants. PMID:35371145
Genome-Wide Evolution and Comparative Analysis of Superoxide Dismutase Gene Family in Cucurbitaceae and Expression Analysis of Lagenaria siceraria Under Multiple Abiotic Stresses. PMID:35211150
PlantGF: an analysis and annotation platform for plant gene families. PMID:35134149
An efficient root transformation system for CRISPR/Cas9-based analyses of shoot-root communication in cucurbit crops. PMID:35048110
QTL mapping and genomic analyses of earliness and fruit ripening traits in a melon Recombinant Inbred Lines population supported by de novo assembly of their parental genomes. PMID:35043206
Genome-Wide Identification and Characterization of Melon bHLH Transcription Factors in Regulation of Fruit Development. PMID:34961193
Starch branching enzymes as putative determinants of postharvest quality in horticultural crops. PMID:34674662
Genetic Loci Associated with Resistance to Zucchini Yellow Mosaic Virus in Squash. PMID:34579467
New early phenotypic markers for cucumber green mottle mosaic virus disease in cucumbers exposed to fluctuating extreme temperatures. PMID:34561518
Large-scale gene gains and losses molded the NLR defense arsenal during the Cucurbita evolution. PMID:34559316
Genetic Resources and Vulnerabilities of Major Cucurbit Crops. PMID:34440396
The Breeding Information Management System (BIMS): an online resource for crop breeding. PMID:34415997
A PostgreSQL Tripal solution for large-scale genotypic and phenotypic data. PMID:34389844
Tripal, a community update after 10 years of supporting open source, standards-based genetic, genomic and breeding databases. PMID:34251419
High Throughput Sequencing-Aided Survey Reveals Widespread Mixed Infections of Whitefly-Transmitted Viruses in Cucurbits in Georgia, USA. PMID:34073397
The domestication of Cucurbita argyrosperma as revealed by the genome of its wild relative. PMID:33931618
Grafting Delays Watermel on Fruit Ripening by Altering Gene Expression of ABA Centric Phytohormone Signaling. PMID:33719297
Evolutionary gain of oligosaccharide hydrolysis and sugar transport enhanced carbohydrate partitioning in sweet watermelon fruits. PMID:33570606
A combined BSA-Seq and linkage mapping approach identifies genomic regions associated with Phytophthora root and crown rot resistance in squash. PMID:33388885
Plant-ImputeDB: an integrated multiple plant reference panel database for genotype imputation. PMID:33137192
QTL associated with gummy stem blight resistance in watermelon. PMID:33135096
Mapping a Partial Andromonoecy Locus in Citrullus lanatus Using BSA-Seq and GWAS Approaches. PMID:32973825
Genome-wide identification and analysis of GRAS transcription factors in the bottle gourd genome. PMID:32868844
Kiwifruit Genome Database (KGD): a comprehensive resource for kiwifruit genomics. PMID:32821400
QTL Mapping and Marker Development for Tolerance to Sulfur Phytotoxicity in Melon (Cucumis melo). PMID:32793259
Comparative genomics of muskmelon reveals a potential role for retrotransposons in the modification of gene expression. PMID:32792560
Tripal and Galaxy: supporting reproducible scientific workflows for community biological databases. PMID:32621602
Genome-wide identification, characterization, and expression analysis of the expansin gene family in watermelon (Citrullus lanatus). PMID:32550119
Decreased Protein Abundance of Lycopene β-Cyclase Contributes to Red Flesh in Domesticated Watermelon. PMID:32321841
Identification of Fruit-Associated QTLs in Winter Squash (Cucurbita maxima Duchesne) Using Recombinant Inbred Lines. PMID:32295204
QTL-seq for identification of loci associated with resistance to Phytophthora crown rot in squash. PMID:32210312
Comparative Transcriptome Analysis of Two Cucumber Cultivars with Different Sensitivity to Cucumber Mosaic Virus Infection. PMID:32098056
A cucumber green mottle mosaic virus vector for virus-induced gene silencing in cucurbit plants. PMID:32025236
Comparative Analysis between Wild and Cultivated Cucumbers Reveals Transcriptional Changes during Domestication Process. PMID:31947725
Insights into Drought Stress Signaling in Plants and the Molecular Genetic Basis of Cotton Drought Tolerance. PMID:31906215
Omics Potential in Herbicide-Resistant Weed Management. PMID:31847327
QTL and Transcriptomic Analyses Implicate Cuticle Transcription Factor SHINE as a Source of Natural Variation for Epidermal Traits in Cucumber Fruit. PMID:31827480
QTL mapping of resistance to Fusarium oxysporum f. sp. niveum race 2 and Papaya ringspot virus in Citrullus amarus. PMID:31822938
Selection footprints reflect genomic changes associated with breeding efforts in 56 cucumber inbred lines. PMID:31754434
Dodder-transmitted mobile signals prime host plants for enhanced salt tolerance. PMID:31665509
Fine Mapping of Lycopene Content and Flesh Color Related Gene and Development of Molecular Marker-Assisted Selection for Flesh Color in Watermelon (Citrullus lanatus). PMID:31649702
Genome sequences of horticultural plants: past, present, and future. PMID:31645966
Ancient duplications and grass-specific transposition influenced the evolution of LEAFY transcription factor genes. PMID:31263781
SpinachBase: a central portal for spinach genomics. PMID:31211398
Comparative Analysis of Calcium-Dependent Protein Kinase in Cucurbitaceae and Expression Studies in Watermelon. PMID:31126008
African Orphan Crops Consortium (AOCC): status of developing genomic resources for African orphan crops. PMID:31073657
Genome of 'Charleston Gray', the principal American watermelon cultivar, and genetic characterization of 1,365 accessions in the U.S. National Plant Germplasm System watermelon collection. PMID:31022325
The 26th annual Nucleic Acids Research database issue and Molecular Biology Database Collection. PMID:30626175
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Tags
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genotype
metasource: Fairsharing.org
version: FAIRsharing.org: CuGenDB; Cucurbit Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.PkY7Hl; Last edited: Jan. 9, 2019, 3:06 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
phenotype
metasource: Fairsharing.org
version: FAIRsharing.org: CuGenDB; Cucurbit Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.PkY7Hl; Last edited: Jan. 9, 2019, 3:06 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
Tags
More detailed information about this field from each metasource.
genotype
metasource: Fairsharing.orgversion: FAIRsharing.org: CuGenDB; Cucurbit Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.PkY7Hl; Last edited: Jan. 9, 2019, 3:06 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
phenotype
metasource: Fairsharing.orgversion: FAIRsharing.org: CuGenDB; Cucurbit Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.PkY7Hl; Last edited: Jan. 9, 2019, 3:06 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
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