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NIHR BioResource: SNP chip data

In order to do recall by genotype, participants have their DNA tested using one the SNP chip arrays from eg. Illumina and Affymetrix (now Thermosfisher). The current iteration is the UK Biobank v2.1 from Thermofisher, which measures ~820k markers.

Description

More detailed information about this field from each metasource.

In order to do recall by genotype, participants have their DNA tested using one the SNP chip arrays from eg. Illumina and Affymetrix (now Thermosfisher). The current iteration is the UK Biobank v2.1 from Thermofisher, which measures ~820k markers.

metasource: HDR UK
version: extracted_at: 2022-09-05T08:28:24.125862

Webpage:

https://www.healthdatagateway.org/dataset/4d560a49-6ab2-460c-980f-94d76d1527f2

Webpage

More detailed information about this field from each metasource.

https://www.healthdatagateway.org/dataset/4d560a49-6ab2-460c-980f-94d76d1527f2

metasource: HDR UK
version: extracted_at: 2022-09-05T08:28:24.125862

Licence:

Name: HDR UK Innovation Gateway Access

Licence name

More detailed information about this field from each metasource.

HDR UK Innovation Gateway Access

metasource: HDR UK
version: extracted_at: 2022-09-05T08:28:24.125862

URL: https://www.hdruk.ac.uk/infrastructure/gateway/terms-and-conditions/

Licence URL

More detailed information about this field from each metasource.

https://www.hdruk.ac.uk/infrastructure/gateway/terms-and-conditions/

metasource: HDR UK
version: extracted_at: 2022-09-05T08:28:24.125862

Tags:

Tags
More detailed information about this field from each metasource.

recall
metasource: HDR UK
version: extracted_at: 2022-09-05T08:28:24.125862

SNP chip
metasource: HDR UK
version: extracted_at: 2022-09-05T08:28:24.125862

microarray
metasource: HDR UK
version: extracted_at: 2022-09-05T08:28:24.125862

biobank
metasource: HDR UK
version: extracted_at: 2022-09-05T08:28:24.125862

Affymetrix
metasource: HDR UK
version: extracted_at: 2022-09-05T08:28:24.125862

Thermofisher
metasource: HDR UK
version: extracted_at: 2022-09-05T08:28:24.125862

feasibility
metasource: HDR UK
version: extracted_at: 2022-09-05T08:28:24.125862

cohort discovery
metasource: HDR UK
version: extracted_at: 2022-09-05T08:28:24.125862

recall snp chip microarray biobank affymetrix thermofisher feasibility cohort discovery

More to explore:

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NIHR IBD BioResource: SNP chip data

NIHR BioResource: SNP imputation data

SNP chip data can be used to impute many of the (non-rare) SNPs not included on the chips. The NIHR BioResource is using a modified version of the UK Biobank protocol to improve the options for recal ...

NIHR IBD BioResource: SNP imputation data

SNP chip data can be used to impute many of the (non-rare) SNPs not included on the chips. The NIHR IBD BioResource is using a modified version of the UK Biobank protocol to improve the options for r ...

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[email protected]

Data is amalgamated and only retrieved periodically.
Some of the resources used by the system:

® FAIRsharing.org
® Bioontology/Bioportal Terms
® Nucleic Acid Research - Database
® re3data.org
® bio.tools
® PubMed - Courtesy of the U.S. National Library of Medicine